Pregenerated sensors for ACOT9 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000025287Ensembl transcript IDs: ENSMUST00000026324.10, ENSMUST00000131332.8
Found 51 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | ATTAGGCACTATGTCACAGTGCCGGGAGTGCTAGTTTGCAACAAGTaGGATTTTCCTAGGGCTCCACAGGGTAGTCCTTTTTCAAGGTCA | + |
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Preference number: 1 (lower is better) Translates to: IRHYVTVPGVLVCNK*DFPRAPQGSPFSRS Trigger: TGACCTTGAAAAAGGACTACCCTGTGGAGCCCTAGGAAAATCTCACTTGTTGCAAACTAGCACTCCCGGCACTGTGACATAGTGCCTAAT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000131332.8 |
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| 3UTR TCA 90 bp | AAGAAAGAAAGAGCAATGAACCAACTTCAACAGGCTTCTGAAACATaGTATCATCCACTGTTACCACATATGGCCGGGAACCGCCAAAGC | + |
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Preference number: 1 (lower is better) Translates to: KKERAMNQLQQASET*YHPLLPHMAGNRQS Trigger: GCTTTGGCGGTTCCCGGCCATATGTGGTAACAGTGGATGATATCATGTTTCAGAAGCCTGTTGAAGTTGGTTCATTGCTCTTTCTTTCTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000131332.8 |
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| 3UTR TCA 90 bp | ACCTGTGAAGAAAGAAAGAGCAATGAACCAACTTCAACAGGCTTCTaGAACATGATATCATCCACTGTTACCACATATGGCCGGGAACCG | + |
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Preference number: 1 (lower is better) Translates to: TCEERKSNEPTSTGF*NMISSTVTTYGREP Trigger: CGGTTCCCGGCCATATGTGGTAACAGTGGATGATATCATGTTTCAGAAGCCTGTTGAAGTTGGTTCATTGCTCTTTCTTTCTTCACAGGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000131332.8 |
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| 3UTR GCA 90 bp | CCGGGAACCGCCAAAGCTACAAGCAGTAGCCCATGCAAGTTCATATaGTTTTCTCATAAGAAAACCACCAAAGATCCGATTGAATACGTT | + |
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Preference number: 1 (lower is better) Translates to: PGTAKATSSSPCKFI*FSHKKTTKDPIEYV Trigger: AACGTATTCAATCGGATCTTTGGTGGTTTTCTTATGAGAAAAGCATATGAACTTGCATGGGCTACTGCTTGTAGCTTTGGCGGTTCCCGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000131332.8 |
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| 3UTR TCA 90 bp | CTCCATCCAGTCACTCATTCTGCTCTTCCGATCATTCTAAAAACTTaGAATATAGCCCCCTCTATGGAGGATAAACAAAGCAAAGTGAAC | + |
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Preference number: 1 (lower is better) Translates to: LHPVTHSALPIILKT*NIAPSMEDKQSKVN Trigger: GTTCACTTTGCTTTGTTTATCCTCCATAGAGGGGGCTATATTTCAAGTTTTTAGAATGATCGGAAGAGCAGAATGAGTGACTGGATGGAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000026324.10 ENSMUST00000131332.8 |
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| 3UTR TCA 90 bp | TTTGTATCCTCCATCCACACTGCTTTAGGAGGCAAAATTCGACTCTaGAAACTTATAGTCTTTGGATCCAGTGTGGTAAGGAACAGTTCA | + |
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Preference number: 1 (lower is better) Translates to: FVSSIHTALGGKIRL*KLIVFGSSVVRNSS Trigger: TGAACTGTTCCTTACCACACTGGATCCAAAGACTATAAGTTTTCAGAGTCGAATTTTGCCTCCTAAAGCAGTGTGGATGGAGGATACAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000131332.8 |
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| 3UTR CCA 90 bp | ATTTTCATCTTCACTTCCATGGATGTATTTCCAACCCAGCTAACATaGCCAGTGAACTTAATGTCCTGTTCAGGGCTTAAGCTGTGTTTA | + |
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Preference number: 1 (lower is better) Translates to: IFIFTSMDVFPTQLT*PVNLMSCSGLKLCL Trigger: TAAACACAGCTTAAGCCCTGAACAGGACATTAAGTTCACTGGCCATGTTAGCTGGGTTGGAAATACATCCATGGAAGTGAAGATGAAAAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000131332.8 |
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| 3UTR-3UTR GCA 90 bp | CACTGTTACCACATATGGCCGGGAACCGCCAAAGCTACAAGCAGTAGCCCATGCGGTCCTCAAGAATCCTaGCAAATCTTACTGTATTTT | + |
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Preference number: 2 (lower is better) Translates to: HCYHIWPGTAKATSSSPCGPQES*QILLYF Trigger: AAAATACAGTAAGATTTGGCAGGATTCTTGAGGACC...GCATGGGCTACTGCTTGTAGCTTTGGCGGTTCCCGGCCATATGTGGTAACAGTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000131332.8 |
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| 3UTR-3UTR CCA 90 bp | CATTCTTTCACCCCCTCGGCTCCATCCAGTCACTCATTCTGCTCTTCCGATCATTCCATTGCTTTTACATaGTCTCTCCAGACTGTGGAT | + |
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Preference number: 2 (lower is better) Translates to: HSFTPSAPSSHSFCSSDHSIAFT*SLQTVD Trigger: ATCCACAGTCTGGAGAGACCATGTAAAAGCAATGGA...ATGATCGGAAGAGCAGAATGAGTGACTGGATGGAGCCGAGGGGGTGAAAGAATG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000131332.8 |
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| 3UTR-3UTR GCA 90 bp | CACTGTTACCACATATGGCCGGGAACCGCCAAAGCTACAAGCAGTAGCCCATGCTATTTCTCATCATTGTaGAGCTGGAACATTTTCATC | + |
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Preference number: 2 (lower is better) Translates to: HCYHIWPGTAKATSSSPCYFSSL*SWNIFI Trigger: GATGAAAATGTTCCAGCTGCACAATGATGAGAAATA...GCATGGGCTACTGCTTGTAGCTTTGGCGGTTCCCGGCCATATGTGGTAACAGTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000131332.8 |
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| 3UTR-3UTR CCA 90 bp | TTTTCTCATAAGAAAACCACCAAAGATCCGATTGAATACGTTTCGTTCCTGAGGATTTTCCGGAATGAGTaGATTTACAAATGCCGGCCC | + |
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Preference number: 2 (lower is better) Translates to: FSHKKTTKDPIEYVSFLRIFRNE*IYKCRP Trigger: GGGCCGGCATTTGTAAATCCACTCATTCCGGAAAAT...CCTCAGGAACGAAACGTATTCAATCGGATCTTTGGTGGTTTTCTTATGAGAAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000131332.8 |
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| 3UTR-3UTR CCA 90 bp | TTTTCTCATAAGAAAACCACCAAAGATCCGATTGAATACGTTTCGTTCCTGAGGTCATCTTCACTTCCATaGATGTATTTCCAACCCAGC | + |
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Preference number: 2 (lower is better) Translates to: FSHKKTTKDPIEYVSFLRSSSLP*MYFQPS Trigger: GCTGGGTTGGAAATACATCCATGGAAGTGAAGATGA...CCTCAGGAACGAAACGTATTCAATCGGATCTTTGGTGGTTTTCTTATGAGAAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000131332.8 |
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| 3UTR-3UTR TCA 90 bp | AGTCACTCATTCTGCTCTTCCGATCATTCTAAAAACTTGAAATATAGCCCCCTCATAAACAAAGCAAAGTaGACATCAGTACTTCTCAGC | + |
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Preference number: 2 (lower is better) Translates to: SHSFCSSDHSKNLKYSPLINKAK*TSVLLS Trigger: GCTGAGAAGTACTGATGTTCACTTTGCTTTGTTTAT...GAGGGGGCTATATTTCAAGTTTTTAGAATGATCGGAAGAGCAGAATGAGTGACT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000026324.10 ENSMUST00000131332.8 |
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| 3UTR-3UTR GCA 90 bp | TTTTCTCATAAGAAAACCACCAAAGATCCGATTGAATACGTTTCGTTCCTGAGGTCCAGTCACTCATTCTaGTCTTCCGATCATTCTAAA | + |
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Preference number: 2 (lower is better) Translates to: FSHKKTTKDPIEYVSFLRSSHSF*SSDHSK Trigger: TTTAGAATGATCGGAAGAGCAGAATGAGTGACTGGA...CCTCAGGAACGAAACGTATTCAATCGGATCTTTGGTGGTTTTCTTATGAGAAAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000131332.8 |
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| 3UTR-3UTR TCA 90 bp | TTTTCTCATAAGAAAACCACCAAAGATCCGATTGAATACGTTTCGTTCCTGAGGATAAACAAAGCAAAGTaGACATCAGTACTTCTCAGC | + |
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Preference number: 2 (lower is better) Translates to: FSHKKTTKDPIEYVSFLRINKAK*TSVLLS Trigger: GCTGAGAAGTACTGATGTTCACTTTGCTTTGTTTAT...CCTCAGGAACGAAACGTATTCAATCGGATCTTTGGTGGTTTTCTTATGAGAAAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000131332.8 |
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| 3UTR CCA 72 bp | CTAGGGCTCCACAGGGTAGTCCTTTTTCAAGGTCACTaGGGTACTCATAGACTTGAAATGTCGCTGTCCATC | + |
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Preference number: 3 (lower is better) Translates to: LGLHRVVLFQGH*GTHRLEMSLSI Trigger: GATGGACAGCGACATTTCAAGTCTATGAGTACCCCAGTGACCTTGAAAAAGGACTACCCTGTGGAGCCCTAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000131332.8 |
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| 3UTR TCA 72 bp | TATGTCACAGTGCCGGGAGTGCTAGTTTGCAACAAGTaGGATTTTCCTAGGGCTCCACAGGGTAGTCCTTTT | + |
|
Preference number: 3 (lower is better) Translates to: YVTVPGVLVCNK*DFPRAPQGSPF Trigger: AAAAGGACTACCCTGTGGAGCCCTAGGAAAATCTCACTTGTTGCAAACTAGCACTCCCGGCACTGTGACATA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000131332.8 |
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| 3UTR CCA 72 bp | CTTCTGAAACATGATATCATCCACTGTTACCACATATaGCCGGGAACCGCCAAAGCTACAAGCAGTAGCCCA | + |
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Preference number: 3 (lower is better) Translates to: LLKHDIIHCYHI*PGTAKATSSSP Trigger: TGGGCTACTGCTTGTAGCTTTGGCGGTTCCCGGCCATATGTGGTAACAGTGGATGATATCATGTTTCAGAAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000131332.8 |
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| 3UTR TCA 72 bp | AGAGCAATGAACCAACTTCAACAGGCTTCTGAAACATaGTATCATCCACTGTTACCACATATGGCCGGGAAC | + |
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Preference number: 3 (lower is better) Translates to: RAMNQLQQASET*YHPLLPHMAGN Trigger: GTTCCCGGCCATATGTGGTAACAGTGGATGATATCATGTTTCAGAAGCCTGTTGAAGTTGGTTCATTGCTCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000131332.8 |
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| 3UTR GCA 72 bp | TCTTTCACCCCCTCGGCTCCATCCAGTCACTCATTCTaGTCTTCCGATCATTCTAAAAACTTGAAATATAGC | + |
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Preference number: 3 (lower is better) Translates to: SFTPSAPSSHSF*SSDHSKNLKYS Trigger: GCTATATTTCAAGTTTTTAGAATGATCGGAAGAGCAGAATGAGTGACTGGATGGAGCCGAGGGGGTGAAAGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000026324.10 ENSMUST00000131332.8 |
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| 3UTR CCA 72 bp | TTCACTTCCATGGATGTATTTCCAACCCAGCTAACATaGCCAGTGAACTTAATGTCCTGTTCAGGGCTTAAG | + |
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Preference number: 3 (lower is better) Translates to: FTSMDVFPTQLT*PVNLMSCSGLK Trigger: CTTAAGCCCTGAACAGGACATTAAGTTCACTGGCCATGTTAGCTGGGTTGGAAATACATCCATGGAAGTGAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000131332.8 |
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| 3UTR TCA 72 bp | TCCATCCACACTGCTTTAGGAGGCAAAATTCGACTCTaGAAACTTATAGTCTTTGGATCCAGTGTGGTAAGG | + |
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Preference number: 3 (lower is better) Translates to: SIHTALGGKIRL*KLIVFGSSVVR Trigger: CCTTACCACACTGGATCCAAAGACTATAAGTTTTCAGAGTCGAATTTTGCCTCCTAAAGCAGTGTGGATGGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000131332.8 |
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| 3UTR-3UTR CAA 90 bp | GAAAGACATTGGTGGTCATATGCTCACGACTGTCAAGAGAAGACACTTCACTATGCAATCCTTCGGCTCTaGTTCAATTCTCCTTGTTTA | + |
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Preference number: 3 (lower is better) Translates to: ERHWWSYAHDCQEKTLHYAILRL*FNSPCL Trigger: TAAACAAGGAGAATTGAACAAGAGCCGAAGGATTGC...ATAGTGAAGTGTCTTCTCTTGACAGTCGTGAGCATATGACCACCAATGTCTTTC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000131332.8 |
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| 3UTR TCA 72 bp | GTCACTCATTCTGCTCTTCCGATCATTCTAAAAACTTaGAATATAGCCCCCTCTATGGAGGATAAACAAAGC | + |
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Preference number: 3 (lower is better) Translates to: VTHSALPIILKT*NIAPSMEDKQS Trigger: GCTTTGTTTATCCTCCATAGAGGGGGCTATATTTCAAGTTTTTAGAATGATCGGAAGAGCAGAATGAGTGAC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000026324.10 ENSMUST00000131332.8 |
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| 3UTR TCA 72 bp | GAAAGAAAGAGCAATGAACCAACTTCAACAGGCTTCTaGAACATGATATCATCCACTGTTACCACATATGGC | + |
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Preference number: 3 (lower is better) Translates to: ERKSNEPTSTGF*NMISSTVTTYG Trigger: GCCATATGTGGTAACAGTGGATGATATCATGTTTCAGAAGCCTGTTGAAGTTGGTTCATTGCTCTTTCTTTC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000131332.8 |
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| 3UTR TCA 72 bp | ATCAAGGGTACTTCTTTTTCCGACATGAATGTAAAATaGAAGACATTGGTGGTCATATGCTCACGACTGTCA | + |
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Preference number: 3 (lower is better) Translates to: IKGTSFSDMNVK*KTLVVICSRLS Trigger: TGACAGTCGTGAGCATATGACCACCAATGTCTTTCATTTTACATTCATGTCGGAAAAAGAAGTACCCTTGAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000131332.8 |
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| 3UTR GCA 72 bp | CTTATTTTCAGAATCTCGAGCCACCATTACAAAGGTTaGATCCAAAACAGGCCAATATTTCTCATCATTGTG | + |
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Preference number: 3 (lower is better) Translates to: LIFRISSHHYKG*IQNRPIFLIIV Trigger: CACAATGATGAGAAATATTGGCCTGTTTTGGATGCAACCTTTGTAATGGTGGCTCGAGATTCTGAAAATAAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000131332.8 |
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| CDS-3UTR TCA 90 bp | CTTTCACCCCCTCGGCTCCATCCAGTCACTCATTCTGCTCTTCCGATCATTCTAGACAGTCCTCTGCCATaGGTAAGAAGCCCCTTGTTC | + |
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Preference number: 4 (lower is better) Translates to: LSPPRLHPVTHSALPIILDSPLP*VRSPLF Trigger: GAACAAGGGGCTTCTTACTCATGGCAGAGGACTGTC...TAGAATGATCGGAAGAGCAGAATGAGTGACTGGATGGAGCCGAGGGGGTGAAAG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000026324.10 ENSMUST00000131332.8 |
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| CDS-3UTR TCA 90 bp | CATTCTTTCACCCCCTCGGCTCCATCCAGTCACTCATTCTGCTCTTCCGATCATCAGGCTTCTGAAACATaGTATCATCCACTGTTACCA | + |
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Preference number: 4 (lower is better) Translates to: HSFTPSAPSSHSFCSSDHQASET*YHPLLP Trigger: TGGTAACAGTGGATGATATCATGTTTCAGAAGCCTG...ATGATCGGAAGAGCAGAATGAGTGACTGGATGGAGCCGAGGGGGTGAAAGAATG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000026324.10 |
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| CDS-3UTR CCA 90 bp | ATTCTTTCACCCCCTCGGCTCCATCCAGTCACTCATTCTGCTCTTCCGATCATTATTTTCCGGAATGAGTaGATTTACAAATGCCGGCCC | + |
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Preference number: 4 (lower is better) Translates to: ILSPPRLHPVTHSALPIIIFRNE*IYKCRP Trigger: GGGCCGGCATTTGTAAATCCACTCATTCCGGAAAAT...AATGATCGGAAGAGCAGAATGAGTGACTGGATGGAGCCGAGGGGGTGAAAGAAT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000026324.10 |
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| CDS-3UTR TCA 90 bp | AGGTTTTATTGTTTAATCATTCTTTCACCCCCTCGGCTCCATCCAGTCACTCATGACAGTCCTCTGCCATaGGTAAGAAGCCCCTTGTTC | + |
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Preference number: 4 (lower is better) Translates to: RFYCLIILSPPRLHPVTHDSPLP*VRSPLF Trigger: GAACAAGGGGCTTCTTACTCATGGCAGAGGACTGTC...ATGAGTGACTGGATGGAGCCGAGGGGGTGAAAGAATGATTAAACAATAAAACCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000026324.10 ENSMUST00000131332.8 |
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| CDS-3UTR CCA 90 bp | AGGTTTTATTGTTTAATCATTCTTTCACCCCCTCGGCTCCATCCAGTCACTCATTCCTCTCCTCAGAACTaGGAGCCACTTTCAGTAATG | + |
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Preference number: 4 (lower is better) Translates to: RFYCLIILSPPRLHPVTHSSPQN*EPLSVM Trigger: CATTACTGAAAGTGGCTCCCAGTTCTGAGGAGAGGA...ATGAGTGACTGGATGGAGCCGAGGGGGTGAAAGAATGATTAAACAATAAAACCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000026324.10 |
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| CDS-3UTR GCA 90 bp | ATTCTTTCACCCCCTCGGCTCCATCCAGTCACTCATTCTGCTCTTCCGATCATTCCATGCAAGTTCATATaGTTTTCTCATAAGAAAACC | + |
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Preference number: 4 (lower is better) Translates to: ILSPPRLHPVTHSALPIIPCKFI*FSHKKT Trigger: GGTTTTCTTATGAGAAAAGCATATGAACTTGCATGG...AATGATCGGAAGAGCAGAATGAGTGACTGGATGGAGCCGAGGGGGTGAAAGAAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000026324.10 |
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| CDS-3UTR CCA 90 bp | TATTGTTTAATCATTCTTTCACCCCCTCGGCTCCATCCAGTCACTCATTCTGCTTCATCTTCACTTCCATaGATGTATTTCCAACCCAGC | + |
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Preference number: 4 (lower is better) Translates to: YCLIILSPPRLHPVTHSASSSLP*MYFQPS Trigger: GCTGGGTTGGAAATACATCCATGGAAGTGAAGATGA...AGCAGAATGAGTGACTGGATGGAGCCGAGGGGGTGAAAGAATGATTAAACAATA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000026324.10 |
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| CDS-3UTR TCA 90 bp | GTTTTATTGTTTAATCATTCTTTCACCCCCTCGGCTCCATCCAGTCACTCATTCCTTCACTATGGACTCTaGCTTGGATGTAATTGTCCT | + |
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Preference number: 4 (lower is better) Translates to: VLLFNHSFTPSAPSSHSFLHYGL*LGCNCP Trigger: AGGACAATTACATCCAAGTCAGAGTCCATAGTGAAG...GAATGAGTGACTGGATGGAGCCGAGGGGGTGAAAGAATGATTAAACAATAAAAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000026324.10 |
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| CDS-3UTR CCA 90 bp | GCTCCATCCAGTCACTCATTCTGCTCTTCCGATCATTCTAAAAACTTGAAATATCCAACCCAGCTAACATaGCCAGTGAACTTAATGTCC | + |
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Preference number: 4 (lower is better) Translates to: APSSHSFCSSDHSKNLKYPTQLT*PVNLMS Trigger: GGACATTAAGTTCACTGGCCATGTTAGCTGGGTTGG...ATATTTCAAGTTTTTAGAATGATCGGAAGAGCAGAATGAGTGACTGGATGGAGC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000026324.10 |
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| 3UTR CAA 72 bp | AGTAATGAACTGGTGCTAAAGGCAATCCTTCGGCTCTaGTTCAATTCTCCTTGTTTAAAGAGCTCTTCTTCC | + |
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Preference number: 4 (lower is better) Translates to: SNELVLKAILRL*FNSPCLKSSSS Trigger: GGAAGAAGAGCTCTTTAAACAAGGAGAATTGAACAAGAGCCGAAGGATTGCCTTTAGCACCAGTTCATTACT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000131332.8 |
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| CDS-3UTR GCA 90 bp | TATTGTTTAATCATTCTTTCACCCCCTCGGCTCCATCCAGTCACTCATTCTGCTGGTCCTCAAGAATCCTaGCAAATCTTACTGTATTTT | + |
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Preference number: 4 (lower is better) Translates to: YCLIILSPPRLHPVTHSAGPQES*QILLYF Trigger: AAAATACAGTAAGATTTGGCAGGATTCTTGAGGACC...AGCAGAATGAGTGACTGGATGGAGCCGAGGGGGTGAAAGAATGATTAAACAATA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000026324.10 |
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| CDS-3UTR CCA 90 bp | TCCAGTCACTCATTCTGCTCTTCCGATCATTCTAAAAACTTGAAATATAGCCCCTCCATTGCTTTTACATaGTCTCTCCAGACTGTGGAT | + |
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Preference number: 4 (lower is better) Translates to: SSHSFCSSDHSKNLKYSPSIAFT*SLQTVD Trigger: ATCCACAGTCTGGAGAGACCATGTAAAAGCAATGGA...GGGGCTATATTTCAAGTTTTTAGAATGATCGGAAGAGCAGAATGAGTGACTGGA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000026324.10 |
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| CDS-3UTR GCA 90 bp | TATTGTTTAATCATTCTTTCACCCCCTCGGCTCCATCCAGTCACTCATTCTGCTTATTTCTCATCATTGTaGAGCTGGAACATTTTCATC | + |
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Preference number: 4 (lower is better) Translates to: YCLIILSPPRLHPVTHSAYFSSL*SWNIFI Trigger: GATGAAAATGTTCCAGCTGCACAATGATGAGAAATA...AGCAGAATGAGTGACTGGATGGAGCCGAGGGGGTGAAAGAATGATTAAACAATA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000026324.10 |
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| CDS-3UTR CCA 90 bp | TCCAGTCACTCATTCTGCTCTTCCGATCATTCTAAAAACTTGAAATATAGCCCCAATGAAAGACATTGGTaGTCATATGCTCACGACTGT | + |
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Preference number: 4 (lower is better) Translates to: SSHSFCSSDHSKNLKYSPNERHW*SYAHDC Trigger: ACAGTCGTGAGCATATGACCACCAATGTCTTTCATT...GGGGCTATATTTCAAGTTTTTAGAATGATCGGAAGAGCAGAATGAGTGACTGGA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000026324.10 |
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| 3UTR CAA 72 bp | TGTTCAGGGCTTAAGCTGTGTTTACACATATCAATCTaGTCCACCAGGACTGTAACTATTGATAAAGGAGAC | + |
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Preference number: 4 (lower is better) Translates to: CSGLKLCLHISI*STRTVTIDKGD Trigger: GTCTCCTTTATCAATAGTTACAGTCCTGGTGGACAAGATTGATATGTGTAAACACAGCTTAAGCCCTGAACA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000131332.8 |
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| CDS-3UTR TCA 90 bp | GAGGATAAACAAAGCAAAGTGAACATCAGTACTTCTCAGCACACCTTTATTAGGACTTCAACAGGCTTCTaGAACATGATATCATCCACT | + |
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Preference number: 4 (lower is better) Translates to: EDKQSKVNISTSQHTFIRTSTGF*NMISST Trigger: AGTGGATGATATCATGTTTCAGAAGCCTGTTGAAGT...CCTAATAAAGGTGTGCTGAGAAGTACTGATGTTCACTTTGCTTTGTTTATCCTC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026324.10 |
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| CDS-3UTR CCA 90 bp | AGTCACTCATTCTGCTCTTCCGATCATTCTAAAAACTTGAAATATAGCCCCCTCTCATCATTGTGCAGCTaGAACATTTTCATCTTCACT | + |
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Preference number: 4 (lower is better) Translates to: SHSFCSSDHSKNLKYSPLSSLCS*NIFIFT Trigger: AGTGAAGATGAAAATGTTCCAGCTGCACAATGATGA...GAGGGGGCTATATTTCAAGTTTTTAGAATGATCGGAAGAGCAGAATGAGTGACT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000026324.10 |
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| 3UTR CAA 72 bp | CCTTATTTTCAGAATCTCGAGCCACCATTACAAAGGTaGCATCCAAAACAGGCCAATATTTCTCATCATTGT | + |
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Preference number: 4 (lower is better) Translates to: PYFQNLEPPLQR*HPKQANISHHC Trigger: ACAATGATGAGAAATATTGGCCTGTTTTGGATGCAACCTTTGTAATGGTGGCTCGAGATTCTGAAAATAAGG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000131332.8 |
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| CDS-3UTR CCA 90 bp | AAACAAAGCAAAGTGAACATCAGTACTTCTCAGCACACCTTTATTAGGCACTATCTTTTTCAAGGTCACTaGGGTACTCATAGACTTGAA | + |
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Preference number: 4 (lower is better) Translates to: KQSKVNISTSQHTFIRHYLFQGH*GTHRLE Trigger: TTCAAGTCTATGAGTACCCCAGTGACCTTGAAAAAG...ATAGTGCCTAATAAAGGTGTGCTGAGAAGTACTGATGTTCACTTTGCTTTGTTT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000026324.10 |
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| CDS-3UTR CAA 90 bp | GCAGTAGCCCATGCAAGTTCATATGCTTTTCTCATAAGAAAACCACCAAAGATCGCAAGTGCCATTCTCTaGGAACCAGGCAAGCGTATC | + |
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Preference number: 5 (lower is better) Translates to: AVAHASSYAFLIRKPPKIASAIL*EPGKRI Trigger: GATACGCTTGCCTGGTTCCAAGAGAATGGCACTTGC...GATCTTTGGTGGTTTTCTTATGAGAAAAGCATATGAACTTGCATGGGCTACTGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000131332.8 |
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| CDS-3UTR CAA 90 bp | GCTCCATCCAGTCACTCATTCTGCTCTTCCGATCATTCTAAAAACTTGAAATATGCAATCCTTCGGCTCTaGTTCAATTCTCCTTGTTTA | + |
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Preference number: 5 (lower is better) Translates to: APSSHSFCSSDHSKNLKYAILRL*FNSPCL Trigger: TAAACAAGGAGAATTGAACAAGAGCCGAAGGATTGC...ATATTTCAAGTTTTTAGAATGATCGGAAGAGCAGAATGAGTGACTGGATGGAGC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000026324.10 |
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| CDS-3UTR CAA 90 bp | AAAGTGAACATCAGTACTTCTCAGCACACCTTTATTAGGCACTATGTCACAGTGCTTGTTCAATTCTCCTaGTTTAAAGAGCTCTTCTTC | + |
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Preference number: 5 (lower is better) Translates to: KVNISTSQHTFIRHYVTVLVQFS*FKELFF Trigger: GAAGAAGAGCTCTTTAAACAAGGAGAATTGAACAAG...CACTGTGACATAGTGCCTAATAAAGGTGTGCTGAGAAGTACTGATGTTCACTTT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026324.10 |
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| CDS-3UTR CAA 90 bp | AAACAAAGCAAAGTGAACATCAGTACTTCTCAGCACACCTTTATTAGGCACTATCAATATTTCTCATCATaGTGCAGCTGGAACATTTTC | + |
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Preference number: 5 (lower is better) Translates to: KQSKVNISTSQHTFIRHYQYFSS*CSWNIF Trigger: GAAAATGTTCCAGCTGCACAATGATGAGAAATATTG...ATAGTGCCTAATAAAGGTGTGCTGAGAAGTACTGATGTTCACTTTGCTTTGTTT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026324.10 |
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| CDS TCA 72 bp | GATACGCCTACTATCTCCCGCAGCTTGTCTCGAACTTaGTGGATGTGTAAGGGTTCACTTATTTTGTATTGG | + |
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Preference number: 6 (lower is better) Translates to: DTPTISRSLSRT*WMCKGSLILYW Trigger: CCAATACAAAATAAGTGAACCCTTACACATCCATCAAGTTCGAGACAAGCTGCGGGAGATAGTAGGCGTATC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026324.10 |
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