Pregenerated sensors for ACOT1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000072949Ensembl transcript IDs: ENSMUST00000168120.3, ENSMUST00000220901.2
Found 46 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CCCTGCCTCGAAGACAGGTCTGAAGGTTGGCACACATGGGATTCCTaGCTTCTGTTTCCTTCCCCAGCTGCTCTGCTGCCTCCTGGACTA | + |
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Preference number: 1 (lower is better) Translates to: PCLEDRSEGWHTWDS*LLFPSPAALLPPGL Trigger: TAGTCCAGGAGGCAGCAGAGCAGCTGGGGAAGGAAACAGAAGCCAGGAATCCCATGTGTGCCAACCTTCAGACCTGTCTTCGAGGCAGGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000168120.3 |
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| 3UTR CCA 90 bp | GCTCACACACATCCTCTCCCCTGCCTCGAAGACAGGTCTGAAGGTTaGCACACATGGGATTCCTGGCTTCTGTTTCCTTCCCCAGCTGCT | + |
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Preference number: 1 (lower is better) Translates to: AHTHPLPCLEDRSEG*HTWDSWLLFPSPAA Trigger: AGCAGCTGGGGAAGGAAACAGAAGCCAGGAATCCCATGTGTGCCAACCTTCAGACCTGTCTTCGAGGCAGGGGAGAGGATGTGTGTGAGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000168120.3 |
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| 3UTR TCA 90 bp | AGCGTTTGCTCACACACATCCTCTCCCCTGCCTCGAAGACAGGTCTaGAGGTTGGCACACATGGGATTCCTGGCTTCTGTTTCCTTCCCC | + |
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Preference number: 1 (lower is better) Translates to: SVCSHTSSPLPRRQV*RLAHMGFLASVSFP Trigger: GGGGAAGGAAACAGAAGCCAGGAATCCCATGTGTGCCAACCTTCAGACCTGTCTTCGAGGCAGGGGAGAGGATGTGTGTGAGCAAACGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000168120.3 |
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| 3UTR CCA 90 bp | AATCCCTCCTCCTGTGCTGACCACTCTCTGACTGGCAGGTGGCTGTaGCCTAAATGTGCGGGAATGAGAGCGTTTGCTCACACACATCCT | + |
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Preference number: 1 (lower is better) Translates to: NPSSCADHSLTGRWL*PKCAGMRAFAHTHP Trigger: AGGATGTGTGTGAGCAAACGCTCTCATTCCCGCACATTTAGGCCACAGCCACCTGCCAGTCAGAGAGTGGTCAGCACAGGAGGAGGGATT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000168120.3 |
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| 3UTR GCA 90 bp | AGGTTGGCACACATGGGATTCCTGGCTTCTGTTTCCTTCCCCAGCTaGTCTGCTGCCTCCTGGACTAAATGTTCTTCCTCCCCTTGTGTC | + |
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Preference number: 1 (lower is better) Translates to: RLAHMGFLASVSFPS*SAASWTKCSSSPCV Trigger: GACACAAGGGGAGGAAGAACATTTAGTCCAGGAGGCAGCAGAGCAGCTGGGGAAGGAAACAGAAGCCAGGAATCCCATGTGTGCCAACCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000168120.3 |
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| 3UTR-3UTR GCA 90 bp | TCCCCAGCTGCTCTGCTGCCTCCTGGACTAAATGTTCTTCCTCCCCTTGTGTCGACCCAGGATCCTGCATaGGCCAGTCAAGGACTTGAC | + |
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Preference number: 2 (lower is better) Translates to: SPAALLPPGLNVLPPLVSTQDPA*ASQGLD Trigger: GTCAAGTCCTTGACTGGCGCATGCAGGATCCTGGGT...CGACACAAGGGGAGGAAGAACATTTAGTCCAGGAGGCAGCAGAGCAGCTGGGGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000168120.3 |
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| 3UTR-3UTR CCA 90 bp | GACCACTCTCTGACTGGCAGGTGGCTGTGGCCTAAATGTGCGGGAATGAGAGCGCACACATGGGATTCCTaGCTTCTGTTTCCTTCCCCA | + |
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Preference number: 2 (lower is better) Translates to: DHSLTGRWLWPKCAGMRAHTWDS*LLFPSP Trigger: TGGGGAAGGAAACAGAAGCCAGGAATCCCATGTGTG...CGCTCTCATTCCCGCACATTTAGGCCACAGCCACCTGCCAGTCAGAGAGTGGTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000168120.3 |
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| 3UTR-3UTR CCA 90 bp | GCATCAAGCATGAGCCTAGCAATGGGTAAAGAAATCCCTCCTCCTGTGCTGACCTCTCTGACTGGCAGGTaGCTGTGGCCTAAATGTGCG | + |
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Preference number: 2 (lower is better) Translates to: ASSMSLAMGKEIPPPVLTSLTGR*LWPKCA Trigger: CGCACATTTAGGCCACAGCCACCTGCCAGTCAGAGA...GGTCAGCACAGGAGGAGGGATTTCTTTACCCATTGCTAGGCTCATGCTTGATGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000168120.3 |
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| 3UTR-3UTR CCA 90 bp | GCATCAAGCATGAGCCTAGCAATGGGTAAAGAAATCCCTCCTCCTGTGCTGACCTGCTCTGCTGCCTCCTaGACTAAATGTTCTTCCTCC | + |
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Preference number: 2 (lower is better) Translates to: ASSMSLAMGKEIPPPVLTCSAAS*TKCSSS Trigger: GGAGGAAGAACATTTAGTCCAGGAGGCAGCAGAGCA...GGTCAGCACAGGAGGAGGGATTTCTTTACCCATTGCTAGGCTCATGCTTGATGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000168120.3 |
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| 3UTR CAA 90 bp | CGCAGCTGGATTGAACCCAGGATCCTGCATGCGCCAGTCAAGGACTaGACAATGAAACTCCATTCCCAGCCCTTGAATCAGCACTATTTT | + |
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Preference number: 2 (lower is better) Translates to: RSWIEPRILHAPVKD*TMKLHSQPLNQHYF Trigger: AAAATAGTGCTGATTCAAGGGCTGGGAATGGAGTTTCATTGTCAAGTCCTTGACTGGCGCATGCAGGATCCTGGGTTCAATCCAGCTGCG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000168120.3 ENSMUST00000220901.2 |
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| 3UTR CAA 90 bp | ATGACAGAGCTCATCACACCAAGAGGTTCTCTCCCCACCGTTGGTTaGCTTTGGAAAGTTGATGTGCACACAGGAAGAAGGAAAGAAAGA | + |
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Preference number: 2 (lower is better) Translates to: MTELITPRGSLPTVG*LWKVDVHTGRRKER Trigger: TCTTTCTTTCCTTCTTCCTGTGTGCACATCAACTTTCCAAAGCAAACCAACGGTGGGGAGAGAACCTCTTGGTGTGATGAGCTCTGTCAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000168120.3 |
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| 3UTR CAA 90 bp | ACAACTGTGTTTAATCATGGTTCCTTTTTATTCCTGGCACTTTTCTaGGATAGCTCCAGTTTCCATAGAACGTGCTTTATTTCTCGCAGC | + |
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Preference number: 2 (lower is better) Translates to: TTVFNHGSFLFLALF*DSSSFHRTCFISRS Trigger: GCTGCGAGAAATAAAGCACGTTCTATGGAAACTGGAGCTATCCAAGAAAAGTGCCAGGAATAAAAAGGAACCATGATTAAACACAGTTGT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000168120.3 |
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| 3UTR CCA 72 bp | CCCTCCTCCTGTGCTGACCACTCTCTGACTGGCAGGTaGCTGTGGCCTAAATGTGCGGGAATGAGAGCGTTT | + |
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Preference number: 3 (lower is better) Translates to: PSSCADHSLTGR*LWPKCAGMRAF Trigger: AAACGCTCTCATTCCCGCACATTTAGGCCACAGCCACCTGCCAGTCAGAGAGTGGTCAGCACAGGAGGAGGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000168120.3 |
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| 3UTR TCA 72 bp | CCCCAAGTCAACCCAAAGCCACTTCGGGAGGGAAGATaGGAGCAGGAACACTGGCCCAAGATTGAAGGACAC | + |
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Preference number: 3 (lower is better) Translates to: PQVNPKPLREGR*EQEHWPKIEGH Trigger: GTGTCCTTCAATCTTGGGCCAGTGTTCCTGCTCTCATCTTCCCTCCCGAAGTGGCTTTGGGTTGACTTGGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000168120.3 |
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| 3UTR TCA 72 bp | GGTAAAGAAATCCCTCCTCCTGTGCTGACCACTCTCTaGCTGGCAGGTGGCTGTGGCCTAAATGTGCGGGAA | + |
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Preference number: 3 (lower is better) Translates to: GKEIPPPVLTTL*LAGGCGLNVRE Trigger: TTCCCGCACATTTAGGCCACAGCCACCTGCCAGTCAGAGAGTGGTCAGCACAGGAGGAGGGATTTCTTTACC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000168120.3 |
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| 3UTR GCA 72 bp | GGAATGAGAGCGTTTGCTCACACACATCCTCTCCCCTaGCTCGAAGACAGGTCTGAAGGTTGGCACACATGG | + |
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Preference number: 3 (lower is better) Translates to: GMRAFAHTHPLP*LEDRSEGWHTW Trigger: CCATGTGTGCCAACCTTCAGACCTGTCTTCGAGGCAGGGGAGAGGATGTGTGTGAGCAAACGCTCTCATTCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000168120.3 |
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| 3UTR CCA 72 bp | GAAGACAGGTCTGAAGGTTGGCACACATGGGATTCCTaGCTTCTGTTTCCTTCCCCAGCTGCTCTGCTGCCT | + |
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Preference number: 3 (lower is better) Translates to: EDRSEGWHTWDS*LLFPSPAALLP Trigger: AGGCAGCAGAGCAGCTGGGGAAGGAAACAGAAGCCAGGAATCCCATGTGTGCCAACCTTCAGACCTGTCTTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000168120.3 |
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| 3UTR CCA 72 bp | CATCCTCTCCCCTGCCTCGAAGACAGGTCTGAAGGTTaGCACACATGGGATTCCTGGCTTCTGTTTCCTTCC | + |
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Preference number: 3 (lower is better) Translates to: HPLPCLEDRSEG*HTWDSWLLFPS Trigger: GGAAGGAAACAGAAGCCAGGAATCCCATGTGTGCCAACCTTCAGACCTGTCTTCGAGGCAGGGGAGAGGATG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000168120.3 |
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| 3UTR TCA 72 bp | TCACACACATCCTCTCCCCTGCCTCGAAGACAGGTCTaGAGGTTGGCACACATGGGATTCCTGGCTTCTGTT | + |
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Preference number: 3 (lower is better) Translates to: SHTSSPLPRRQV*RLAHMGFLASV Trigger: AACAGAAGCCAGGAATCCCATGTGTGCCAACCTTCAGACCTGTCTTCGAGGCAGGGGAGAGGATGTGTGTGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000168120.3 |
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| 3UTR-3UTR CAA 90 bp | GCATCAAGCATGAGCCTAGCAATGGGTAAAGAAATCCCTCCTCCTGTGCTGACCCTCCATTCCCAGCCCTaGAATCAGCACTATTTTGAT | + |
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Preference number: 3 (lower is better) Translates to: ASSMSLAMGKEIPPPVLTLHSQP*NQHYFD Trigger: ATCAAAATAGTGCTGATTCAAGGGCTGGGAATGGAG...GGTCAGCACAGGAGGAGGGATTTCTTTACCCATTGCTAGGCTCATGCTTGATGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000168120.3 |
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| 3UTR GCA 72 bp | TCATCACACCAAGAGGTTCTCTCCCCACCGTTGGTTTaGTTTGGAAAGTTGATGTGCACACAGGAAGAAGGA | + |
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Preference number: 3 (lower is better) Translates to: SSHQEVLSPPLV*FGKLMCTQEEG Trigger: TCCTTCTTCCTGTGTGCACATCAACTTTCCAAAGCAAACCAACGGTGGGGAGAGAACCTCTTGGTGTGATGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000168120.3 |
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| 3UTR CCA 72 bp | ACACCAAGAGGTTCTCTCCCCACCGTTGGTTTGCTTTaGAAAGTTGATGTGCACACAGGAAGAAGGAAAGAA | + |
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Preference number: 3 (lower is better) Translates to: TPRGSLPTVGLL*KVDVHTGRRKE Trigger: TTCTTTCCTTCTTCCTGTGTGCACATCAACTTTCCAAAGCAAACCAACGGTGGGGAGAGAACCTCTTGGTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000168120.3 |
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| 3UTR-3UTR CAA 90 bp | GGAAGGAAGGAAGGAAGGAAGGAAGGAAAGAATTTTAGTTTTGCTGCAGCCTATAACACTGGCCCAAGATaGAAGGACACAATTTTCGGT | + |
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Preference number: 3 (lower is better) Translates to: GRKEGRKEGKNFSFAAAYNTGPR*KDTIFG Trigger: ACCGAAAATTGTGTCCTTCAATCTTGGGCCAGTGTT...ATAGGCTGCAGCAAAACTAAAATTCTTTCCTTCCTTCCTTCCTTCCTTCCTTCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000168120.3 |
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| 3UTR CCA 72 bp | TTAATCATGGTTCCTTTTTATTCCTGGCACTTTTCTTaGATAGCTCCAGTTTCCATAGAACGTGCTTTATTT | + |
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Preference number: 3 (lower is better) Translates to: LIMVPFYSWHFS*IAPVSIERALF Trigger: AAATAAAGCACGTTCTATGGAAACTGGAGCTATCCAAGAAAAGTGCCAGGAATAAAAAGGAACCATGATTAA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000168120.3 |
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| CDS-3UTR CCA 90 bp | AGGATCCTGCATGCGCCAGTCAAGGACTTGACAATGAAACTCCATTCCCAGCCCCATCCAACTGGGCCATaGCATGAGGCTTGGGCTCCC | + |
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Preference number: 4 (lower is better) Translates to: RILHAPVKDLTMKLHSQPHPTGP*HEAWAP Trigger: GGGAGCCCAAGCCTCATGCCATGGCCCAGTTGGATG...GGGCTGGGAATGGAGTTTCATTGTCAAGTCCTTGACTGGCGCATGCAGGATCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000168120.3 ENSMUST00000220901.2 |
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| CDS-3UTR GCA 90 bp | TCCCCAGCTGCTCTGCTGCCTCCTGGACTAAATGTTCTTCCTCCCCTTGTGTCGTCTACCAGAGGGCTTTaGAAAGCATCTACAACATCC | + |
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Preference number: 4 (lower is better) Translates to: SPAALLPPGLNVLPPLVSSTRGL*KASTTS Trigger: GGATGTTGTAGATGCTTTGCAAAGCCCTCTGGTAGA...CGACACAAGGGGAGGAAGAACATTTAGTCCAGGAGGCAGCAGAGCAGCTGGGGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000168120.3 |
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| CDS-3UTR CCA 90 bp | CTGGCACTTTTCTTGGATAGCTCCAGTTTCCATAGAACGTGCTTTATTTCTCGCCATCCAACTGGGCCATaGCATGAGGCTTGGGCTCCC | + |
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Preference number: 4 (lower is better) Translates to: LALFLDSSSFHRTCFISRHPTGP*HEAWAP Trigger: GGGAGCCCAAGCCTCATGCCATGGCCCAGTTGGATG...GCGAGAAATAAAGCACGTTCTATGGAAACTGGAGCTATCCAAGAAAAGTGCCAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000168120.3 ENSMUST00000220901.2 |
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| CDS-3UTR TCA 90 bp | TGGCACTTTTCTTGGATAGCTCCAGTTTCCATAGAACGTGCTTTATTTCTCGCAGCTCCCCTCCAAAGGTaGTGTTGGCACCCACCAGGA | + |
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Preference number: 4 (lower is better) Translates to: WHFSWIAPVSIERALFLAAPLQR*CWHPPG Trigger: TCCTGGTGGGTGCCAACATCACCTTTGGAGGGGAGC...TGCGAGAAATAAAGCACGTTCTATGGAAACTGGAGCTATCCAAGAAAAGTGCCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000168120.3 ENSMUST00000220901.2 |
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| CDS-3UTR TCA 90 bp | TTGGATAGCTCCAGTTTCCATAGAACGTGCTTTATTTCTCGCAGCTGGATTGAAGCTCCCCTCCAAAGGTaGTGTTGGCACCCACCAGGA | + |
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Preference number: 4 (lower is better) Translates to: LDSSSFHRTCFISRSWIEAPLQR*CWHPPG Trigger: TCCTGGTGGGTGCCAACATCACCTTTGGAGGGGAGC...TTCAATCCAGCTGCGAGAAATAAAGCACGTTCTATGGAAACTGGAGCTATCCAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000168120.3 ENSMUST00000220901.2 |
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| CDS-3UTR GCA 90 bp | GCACTTTTCTTGGATAGCTCCAGTTTCCATAGAACGTGCTTTATTTCTCGCAGCACCACGAAGGGCGTCTaGACGTCGCGCTTGACCAAT | + |
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Preference number: 4 (lower is better) Translates to: ALFLDSSSFHRTCFISRSTTKGV*TSRLTN Trigger: ATTGGTCAAGCGCGACGTGCAGACGCCCTTCGTGGT...GCTGCGAGAAATAAAGCACGTTCTATGGAAACTGGAGCTATCCAAGAAAAGTGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000168120.3 |
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| 3UTR CAA 72 bp | ATTGAACCCAGGATCCTGCATGCGCCAGTCAAGGACTaGACAATGAAACTCCATTCCCAGCCCTTGAATCAG | + |
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Preference number: 4 (lower is better) Translates to: IEPRILHAPVKD*TMKLHSQPLNQ Trigger: CTGATTCAAGGGCTGGGAATGGAGTTTCATTGTCAAGTCCTTGACTGGCGCATGCAGGATCCTGGGTTCAAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000168120.3 ENSMUST00000220901.2 |
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| 3UTR CAA 72 bp | GTTTCCATAGAACGTGCTTTATTTCTCGCAGCTGGATaGAACCCAGGATCCTGCATGCGCCAGTCAAGGACT | + |
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Preference number: 4 (lower is better) Translates to: VSIERALFLAAG*NPGSCMRQSRT Trigger: AGTCCTTGACTGGCGCATGCAGGATCCTGGGTTCAATCCAGCTGCGAGAAATAAAGCACGTTCTATGGAAAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000168120.3 ENSMUST00000220901.2 |
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| 3UTR CAA 72 bp | CTCATCACACCAAGAGGTTCTCTCCCCACCGTTGGTTaGCTTTGGAAAGTTGATGTGCACACAGGAAGAAGG | + |
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Preference number: 4 (lower is better) Translates to: LITPRGSLPTVG*LWKVDVHTGRR Trigger: CCTTCTTCCTGTGTGCACATCAACTTTCCAAAGCAAACCAACGGTGGGGAGAGAACCTCTTGGTGTGATGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000168120.3 |
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| 3UTR CAA 72 bp | CAGAGCTCATCACACCAAGAGGTTCTCTCCCCACCGTaGGTTTGCTTTGGAAAGTTGATGTGCACACAGGAA | + |
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Preference number: 4 (lower is better) Translates to: QSSSHQEVLSPP*VCFGKLMCTQE Trigger: TTCCTGTGTGCACATCAACTTTCCAAAGCAAACCAACGGTGGGGAGAGAACCTCTTGGTGTGATGAGCTCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000168120.3 |
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| CDS-3UTR GCA 90 bp | ATCCTGCATGCGCCAGTCAAGGACTTGACAATGAAACTCCATTCCCAGCCCTTGATTTTAGGAGACACATaGAAACACTCACTACCCAAC | + |
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Preference number: 4 (lower is better) Translates to: ILHAPVKDLTMKLHSQPLILGDT*KHSLPN Trigger: GTTGGGTAGTGAGTGTTTGCATGTGTCTCCTAAAAT...CAAGGGCTGGGAATGGAGTTTCATTGTCAAGTCCTTGACTGGCGCATGCAGGAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000168120.3 ENSMUST00000220901.2 |
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| CDS-3UTR CCA 90 bp | AGCTCCAGTTTCCATAGAACGTGCTTTATTTCTCGCAGCTGGATTGAACCCAGGAGTACTCCATGTGCATaGTTTCCATGTTCTTGGGGA | + |
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Preference number: 4 (lower is better) Translates to: SSSFHRTCFISRSWIEPRSTPCA*FPCSWG Trigger: TCCCCAAGAACATGGAAACCATGCACATGGAGTACT...CCTGGGTTCAATCCAGCTGCGAGAAATAAAGCACGTTCTATGGAAACTGGAGCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000168120.3 |
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| CDS-3UTR GCA 90 bp | TGGACTAAATGTTCTTCCTCCCCTTGTGTCGCCATGACAGAGCTCATCACACCATCAAAGTACTCCATGTaGATGGTTTCCATGTTCTTG | + |
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Preference number: 4 (lower is better) Translates to: WTKCSSSPCVAMTELITPSKYSM*MVSMFL Trigger: CAAGAACATGGAAACCATGCACATGGAGTACTTTGA...TGGTGTGATGAGCTCTGTCATGGCGACACAAGGGGAGGAAGAACATTTAGTCCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000168120.3 |
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| CDS-3UTR GCA 90 bp | CCAGTCAAGGACTTGACAATGAAACTCCATTCCCAGCCCTTGAATCAGCACTATATTTTAGGAGACACATaGAAACACTCACTACCCAAC | + |
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Preference number: 4 (lower is better) Translates to: PVKDLTMKLHSQPLNQHYILGDT*KHSLPN Trigger: GTTGGGTAGTGAGTGTTTGCATGTGTCTCCTAAAAT...ATAGTGCTGATTCAAGGGCTGGGAATGGAGTTTCATTGTCAAGTCCTTGACTGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000168120.3 ENSMUST00000220901.2 |
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| CDS-3UTR TCA 90 bp | TTCTTGGATAGCTCCAGTTTCCATAGAACGTGCTTTATTTCTCGCAGCTGGATTTTGGTCATTTTGACCTaGTTTCTCAGGATAGTCACA | + |
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Preference number: 4 (lower is better) Translates to: FLDSSSFHRTCFISRSWILVILT*FLRIVT Trigger: TGTGACTATCCTGAGAAATCAGGTCAAAATGACCAA...AATCCAGCTGCGAGAAATAAAGCACGTTCTATGGAAACTGGAGCTATCCAAGAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000168120.3 |
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| 3UTR CAA 72 bp | TTTAATCATGGTTCCTTTTTATTCCTGGCACTTTTCTaGGATAGCTCCAGTTTCCATAGAACGTGCTTTATT | + |
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Preference number: 4 (lower is better) Translates to: FNHGSFLFLALF*DSSSFHRTCFI Trigger: AATAAAGCACGTTCTATGGAAACTGGAGCTATCCAAGAAAAGTGCCAGGAATAAAAAGGAACCATGATTAAA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000168120.3 |
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| 3UTR CAA 72 bp | GTCAAGGACTTGACAATGAAACTCCATTCCCAGCCCTaGAATCAGCACTATTTTGATAATTATATCAATTTT | + |
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Preference number: 4 (lower is better) Translates to: VKDLTMKLHSQP*NQHYFDNYINF Trigger: AAAATTGATATAATTATCAAAATAGTGCTGATTCAAGGGCTGGGAATGGAGTTTCATTGTCAAGTCCTTGAC 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000168120.3 |
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| CDS TCA 90 bp | GGAAGTAAGGGGGCTCGATGTAATGCCCTGCTGCTGGGTAGCAGATaGTCTGGGGCTTCTCCTTCCCGTGCGCCTGCAGGCGTTTGGAGA | + |
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Preference number: 5 (lower is better) Translates to: GSKGARCNALLLGSR*SGASPSRAPAGVWR Trigger: TCTCCAAACGCCTGCAGGCGCACGGGAAGGAGAAGCCCCAGATCATCTGCTACCCAGCAGCAGGGCATTACATCGAGCCCCCTTACTTCC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000168120.3 ENSMUST00000220901.2 |
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| CDS-3UTR CAA 90 bp | ACTGTGTTTAATCATGGTTCCTTTTTATTCCTGGCACTTTTCTTGGATAGCTCCGTCTACCAGAGGGCTTaGCAAAGCATCTACAACATC | + |
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Preference number: 5 (lower is better) Translates to: TVFNHGSFLFLALFLDSSVYQRA*QSIYNI Trigger: GATGTTGTAGATGCTTTGCAAAGCCCTCTGGTAGAC...GGAGCTATCCAAGAAAAGTGCCAGGAATAAAAAGGAACCATGATTAAACACAGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000168120.3 |
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| CDS GCA 72 bp | ACGGGAATGAAGCTCTTCTTGTCTACCAGAGGGCTTTaGAAAGCATCTACAACATCCTTGAGGCCATCCTTG | + |
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Preference number: 6 (lower is better) Translates to: TGMKLFLSTRGL*KASTTSLRPSL Trigger: CAAGGATGGCCTCAAGGATGTTGTAGATGCTTTGCAAAGCCCTCTGGTAGACAAGAAGAGCTTCATTCCCGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000168120.3 |
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| CDS CAA 72 bp | CACGGGAATGAAGCTCTTCTTGTCTACCAGAGGGCTTaGCAAAGCATCTACAACATCCTTGAGGCCATCCTT | + |
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Preference number: 6 (lower is better) Translates to: HGNEALLVYQRA*QSIYNILEAIL Trigger: AAGGATGGCCTCAAGGATGTTGTAGATGCTTTGCAAAGCCCTCTGGTAGACAAGAAGAGCTTCATTCCCGTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000168120.3 |
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| CDS GCA 72 bp | AACCATCATATAATAGGTTATATTTTAGGAGACACATaGAAACACTCACTACCCAACTGTTTGTGGAAGAAA | + |
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Preference number: 6 (lower is better) Translates to: NHHIIGYILGDT*KHSLPNCLWKK Trigger: TTTCTTCCACAAACAGTTGGGTAGTGAGTGTTTGCATGTGTCTCCTAAAATATAACCTATTATATGATGGTT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000220901.2 |
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