RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ACO1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000028405

Ensembl transcript IDs: ENSMUST00000102973.4

Found 179 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CCACTTGCTCATCCTGCCAGCACCCTCATCAGAAGTAGATGTGGCTaGTCTGCCAGGCCTCCACCAGTGGGGGCCTGGTTCCTCATTGGG +
Preference number: 1 (lower is better)
Translates to: PLAHPASTLIRSRCG*SARPPPVGAWFLIG
Trigger: CCCAATGAGGAACCAGGCCCCCACTGGTGGAGGCCTGGCAGAGCAGCCACATCTACTTCTGATGAGGGTGCTGGCAGGATGAGCAAGTGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
3UTR CCA 90 bp AGAAGTAGATGTGGCTGCTCTGCCAGGCCTCCACCAGTGGGGGCCTaGTTCCTCATTGGGTCTAGCACCAAGTGCGGGTCTCCTGAGAGG +
Preference number: 1 (lower is better)
Translates to: RSRCGCSARPPPVGA*FLIGSSTKCGSPER
Trigger: CCTCTCAGGAGACCCGCACTTGGTGCTAGACCCAATGAGGAACCAGGCCCCCACTGGTGGAGGCCTGGCAGAGCAGCCACATCTACTTCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
3UTR CCA 90 bp CCCTCATCAGAAGTAGATGTGGCTGCTCTGCCAGGCCTCCACCAGTaGGGGCCTGGTTCCTCATTGGGTCTAGCACCAAGTGCGGGTCTC +
Preference number: 1 (lower is better)
Translates to: PSSEVDVAALPGLHQ*GPGSSLGLAPSAGL
Trigger: GAGACCCGCACTTGGTGCTAGACCCAATGAGGAACCAGGCCCCCACTGGTGGAGGCCTGGCAGAGCAGCCACATCTACTTCTGATGAGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
3UTR TCA 90 bp GAGCAGAGACAAACACAGAACAACAGAAAGGGTAGGAGCCACTTCTaGGAATACTGGCTAGTGCTGAGCTCAAGATTAGTCAGAGGGAAA +
Preference number: 1 (lower is better)
Translates to: EQRQTQNNRKGRSHF*EYWLVLSSRLVRGK
Trigger: TTTCCCTCTGACTAATCTTGAGCTCAGCACTAGCCAGTATTCTCAGAAGTGGCTCCTACCCTTTCTGTTGTTCTGTGTTTGTCTCTGCTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
3UTR-3UTR GCA 90 bp CTCTGTGCCTCCAGGAATGGCAGTGCCCACTTGCTCATCCTGCCAGCACCCTCAAGAAGTAGATGTGGCTaGTCTGCCAGGCCTCCACCA +
Preference number: 2 (lower is better)
Translates to: LCASRNGSAHLLILPAPSRSRCG*SARPPP
Trigger: TGGTGGAGGCCTGGCAGAGCAGCCACATCTACTTCT...TGAGGGTGCTGGCAGGATGAGCAAGTGGGCACTGCCATTCCTGGAGGCACAGAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
3UTR-3UTR GCA 90 bp CTCCAGGAATGGCAGTGCCCACTTGCTCATCCTGCCAGCACCCTCATCAGAAGTGGGTCTAGCACCAAGTaGGGGTCTCCTGAGAGGTCA +
Preference number: 2 (lower is better)
Translates to: LQEWQCPLAHPASTLIRSGSSTK*GSPERS
Trigger: TGACCTCTCAGGAGACCCGCACTTGGTGCTAGACCC...ACTTCTGATGAGGGTGCTGGCAGGATGAGCAAGTGGGCACTGCCATTCCTGGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
3UTR-3UTR GCA 90 bp AAGCGAGTTCTCTTTGGTACTACGGACCTTCCCGTGATTCTAGAATCCAGATTACTCCAGGAATGGCAGTaGCCACTTGCTCATCCTGCC +
Preference number: 2 (lower is better)
Translates to: KRVLFGTTDLPVILESRLLQEWQ*PLAHPA
Trigger: GGCAGGATGAGCAAGTGGGCACTGCCATTCCTGGAG...TAATCTGGATTCTAGAATCACGGGAAGGTCCGTAGTACCAAAGAGAACTCGCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
3UTR-3UTR CCA 90 bp AAGCGAGTTCTCTTTGGTACTACGGACCTTCCCGTGATTCTAGAATCCAGATTAAAAACTAGAGACTCCTaGCTCTGTGCCTCCAGGAAT +
Preference number: 2 (lower is better)
Translates to: KRVLFGTTDLPVILESRLKTRDS*LCASRN
Trigger: ATTCCTGGAGGCACAGAGCCAGGAGTCTCTAGTTTT...TAATCTGGATTCTAGAATCACGGGAAGGTCCGTAGTACCAAAGAGAACTCGCTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
3UTR CCA 72 bp TGTGGCTGCTCTGCCAGGCCTCCACCAGTGGGGGCCTaGTTCCTCATTGGGTCTAGCACCAAGTGCGGGTCT +
Preference number: 3 (lower is better)
Translates to: CGCSARPPPVGA*FLIGSSTKCGS
Trigger: AGACCCGCACTTGGTGCTAGACCCAATGAGGAACCAGGCCCCCACTGGTGGAGGCCTGGCAGAGCAGCCACA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
3UTR GCA 72 bp CATCCTGCCAGCACCCTCATCAGAAGTAGATGTGGCTaGTCTGCCAGGCCTCCACCAGTGGGGGCCTGGTTC +
Preference number: 3 (lower is better)
Translates to: HPASTLIRSRCG*SARPPPVGAWF
Trigger: GAACCAGGCCCCCACTGGTGGAGGCCTGGCAGAGCAGCCACATCTACTTCTGATGAGGGTGCTGGCAGGATG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
3UTR CCA 72 bp GAAGTAGATGTGGCTGCTCTGCCAGGCCTCCACCAGTaGGGGCCTGGTTCCTCATTGGGTCTAGCACCAAGT +
Preference number: 3 (lower is better)
Translates to: EVDVAALPGLHQ*GPGSSLGLAPS
Trigger: ACTTGGTGCTAGACCCAATGAGGAACCAGGCCCCCACTGGTGGAGGCCTGGCAGAGCAGCCACATCTACTTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
3UTR TCA 72 bp AGGAAGGGATCCCATCGCTGCTATGAATCTGAAGTGTaGAGAAGGTCTATGCTATGTCAGTTAACACTGGTG +
Preference number: 3 (lower is better)
Translates to: RKGSHRCYESEV*RRSMLCQLTLV
Trigger: CACCAGTGTTAACTGACATAGCATAGACCTTCTTCACACTTCAGATTCATAGCAGCGATGGGATCCCTTCCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
3UTR TCA 72 bp ATCGTTGAAAATGGTAAGAGGCAATCTCATGTTGATTaGAAGGTAGATAATCAAACACTTTTGACGGGTGAC +
Preference number: 3 (lower is better)
Translates to: IVENGKRQSHVD*KVDNQTLLTGD
Trigger: GTCACCCGTCAAAAGTGTTTGATTATCTACCTTTCAATCAACATGAGATTGCCTCTTACCATTTTCAACGAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS-3UTR CCA 90 bp CCAGGCCTCCACCAGTGGGGGCCTGGTTCCTCATTGGGTCTAGCACCAAGTGCGGCAGGAAAGGGCCTTTaGCTGCCCAGTCTCGGGAGC +
Preference number: 4 (lower is better)
Translates to: PGLHQWGPGSSLGLAPSAAGKGL*LPSLGS
Trigger: GCTCCCGAGACTGGGCAGCCAAAGGCCCTTTCCTGC...CGCACTTGGTGCTAGACCCAATGAGGAACCAGGCCCCCACTGGTGGAGGCCTGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
3UTR CAA 72 bp CTGCCAGGCCTCCACCAGTGGGGGCCTGGTTCCTCATaGGGTCTAGCACCAAGTGCGGGTCTCCTGAGAGGT +
Preference number: 4 (lower is better)
Translates to: LPGLHQWGPGSS*GLAPSAGLLRG
Trigger: ACCTCTCAGGAGACCCGCACTTGGTGCTAGACCCAATGAGGAACCAGGCCCCCACTGGTGGAGGCCTGGCAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS-3UTR GCA 90 bp TGTGGCTGCTCTGCCAGGCCTCCACCAGTGGGGGCCTGGTTCCTCATTGGGTCTTGCCGATGCAGGTCATaGAGCCGTAGCCCACCACAT +
Preference number: 4 (lower is better)
Translates to: CGCSARPPPVGAWFLIGSCRCRS*SRSPPH
Trigger: ATGTGGTGGGCTACGGCTGCATGACCTGCATCGGCA...AGACCCAATGAGGAACCAGGCCCCCACTGGTGGAGGCCTGGCAGAGCAGCCACA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS-3UTR GCA 90 bp AGTAGATGTGGCTGCTCTGCCAGGCCTCCACCAGTGGGGGCCTGGTTCCTCATTAGGGGAAGTCCAGCCTaGTGGTACCGCTCAGCAGCG +
Preference number: 4 (lower is better)
Translates to: SRCGCSARPPPVGAWFLIRGSPA*WYRSAA
Trigger: CGCTGCTGAGCGGTACCAGCAGGCTGGACTTCCCCT...AATGAGGAACCAGGCCCCCACTGGTGGAGGCCTGGCAGAGCAGCCACATCTACT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS-3UTR CCA 90 bp TCCTGGCTCTGTGCCTCCAGGAATGGCAGTGCCCACTTGCTCATCCTGCCAGCAGGAAGTCCAGCCTGCTaGTACCGCTCAGCAGCGTCG +
Preference number: 4 (lower is better)
Translates to: SWLCASRNGSAHLLILPAGSPAC*YRSAAS
Trigger: CGACGCTGCTGAGCGGTACCAGCAGGCTGGACTTCC...TGCTGGCAGGATGAGCAAGTGGGCACTGCCATTCCTGGAGGCACAGAGCCAGGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS-3UTR TCA 90 bp CCAGGCCTCCACCAGTGGGGGCCTGGTTCCTCATTGGGTCTAGCACCAAGTGCGCTCGAAGGTAGTAGGTaGCCACTCCACTTCCAGGAG +
Preference number: 4 (lower is better)
Translates to: PGLHQWGPGSSLGLAPSALEGSR*PLHFQE
Trigger: CTCCTGGAAGTGGAGTGGTCACCTACTACCTTCGAG...CGCACTTGGTGCTAGACCCAATGAGGAACCAGGCCCCCACTGGTGGAGGCCTGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS-3UTR TCA 90 bp CCAGGCCTCCACCAGTGGGGGCCTGGTTCCTCATTGGGTCTAGCACCAAGTGCGGGGAGCCATAGGAGTTaGACTCTCGTGGTGTTAGGC +
Preference number: 4 (lower is better)
Translates to: PGLHQWGPGSSLGLAPSAGSHRS*TLVVLG
Trigger: GCCTAACACCACGAGAGTTCAACTCCTATGGCTCCC...CGCACTTGGTGCTAGACCCAATGAGGAACCAGGCCCCCACTGGTGGAGGCCTGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS-3UTR GCA 90 bp TGGCTCTGTGCCTCCAGGAATGGCAGTGCCCACTTGCTCATCCTGCCAGCACCCGTCCACTGTTGCCGATaGAGGTCATGCAGCCGTAGC +
Preference number: 4 (lower is better)
Translates to: WLCASRNGSAHLLILPAPVHCCR*RSCSRS
Trigger: GCTACGGCTGCATGACCTGCATCGGCAACAGTGGAC...GGGTGCTGGCAGGATGAGCAAGTGGGCACTGCCATTCCTGGAGGCACAGAGCCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS-3UTR GCA 90 bp CTCCTGGCTCTGTGCCTCCAGGAATGGCAGTGCCCACTTGCTCATCCTGCCAGCGTCTCCCTGGGTGATTaGCTCGACCACAGGTTCAGG +
Preference number: 4 (lower is better)
Translates to: LLALCLQEWQCPLAHPASVSLGD*LDHRFR
Trigger: CCTGAACCTGTGGTCGAGGCAATCACCCAGGGAGAC...GCTGGCAGGATGAGCAAGTGGGCACTGCCATTCCTGGAGGCACAGAGCCAGGAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS-3UTR GCA 90 bp AGTAGATGTGGCTGCTCTGCCAGGCCTCCACCAGTGGGGGCCTGGTTCCTCATTATCCCGGGGATGACATaGTGCCTTTCCACCGCCTGG +
Preference number: 4 (lower is better)
Translates to: SRCGCSARPPPVGAWFLIIPGMT*CLSTAW
Trigger: CCAGGCGGTGGAAAGGCAGCATGTCATCCCCGGGAT...AATGAGGAACCAGGCCCCCACTGGTGGAGGCCTGGCAGAGCAGCCACATCTACT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS-3UTR GCA 90 bp TGTGGCTGCTCTGCCAGGCCTCCACCAGTGGGGGCCTGGTTCCTCATTGGGTCTCCCAGTCTCGGGAGCTaGCTGAACCGTATTCTTTCC +
Preference number: 4 (lower is better)
Translates to: CGCSARPPPVGAWFLIGSPSLGS*LNRILS
Trigger: GGAAAGAATACGGTTCAGGCAGCTCCCGAGACTGGG...AGACCCAATGAGGAACCAGGCCCCCACTGGTGGAGGCCTGGCAGAGCAGCCACA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS-3UTR TCA 90 bp GCCAGCACCCTCATCAGAAGTAGATGTGGCTGCTCTGCCAGGCCTCCACCAGTGTCAGCAATGGACAGCTaGGCCACTCCTGGCCCGAAA +
Preference number: 4 (lower is better)
Translates to: ASTLIRSRCGCSARPPPVSAMDS*ATPGPK
Trigger: TTTCGGGCCAGGAGTGGCTCAGCTGTCCATTGCTGA...CACTGGTGGAGGCCTGGCAGAGCAGCCACATCTACTTCTGATGAGGGTGCTGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS-3UTR CCA 90 bp TGGCTCTGTGCCTCCAGGAATGGCAGTGCCCACTTGCTCATCCTGCCAGCACCCAACCTCTTTCCTGGTTaGGCAGCGTCCAAGGGCTCA +
Preference number: 4 (lower is better)
Translates to: WLCASRNGSAHLLILPAPNLFPG*AASKGS
Trigger: TGAGCCCTTGGACGCTGCCCAACCAGGAAAGAGGTT...GGGTGCTGGCAGGATGAGCAAGTGGGCACTGCCATTCCTGGAGGCACAGAGCCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS-3UTR CCA 90 bp CTCCTGGCTCTGTGCCTCCAGGAATGGCAGTGCCCACTTGCTCATCCTGCCAGCTCAGCAAGCGAATGTTaGCAAATGTCCCCCGGGCCA +
Preference number: 4 (lower is better)
Translates to: LLALCLQEWQCPLAHPASSASEC*QMSPGP
Trigger: TGGCCCGGGGGACATTTGCCAACATTCGCTTGCTGA...GCTGGCAGGATGAGCAAGTGGGCACTGCCATTCCTGGAGGCACAGAGCCAGGAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS-3UTR TCA 90 bp CATCCTGCCAGCACCCTCATCAGAAGTAGATGTGGCTGCTCTGCCAGGCCTCCAGATGTCACCAGAGGGTaGGGCTTCCCCATCAGCTTG +
Preference number: 4 (lower is better)
Translates to: HPASTLIRSRCGCSARPPDVTRG*GFPISL
Trigger: CAAGCTGATGGGGAAGCCTCACCCTCTGGTGACATC...TGGAGGCCTGGCAGAGCAGCCACATCTACTTCTGATGAGGGTGCTGGCAGGATG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS-3UTR GCA 90 bp CTCCTGGCTCTGTGCCTCCAGGAATGGCAGTGCCCACTTGCTCATCCTGCCAGCACAGTTCCGAACGGCTaGCTCCAGGAGAACTCTGAT +
Preference number: 4 (lower is better)
Translates to: LLALCLQEWQCPLAHPASTVPNG*LQENSD
Trigger: ATCAGAGTTCTCCTGGAGGCAGCCGTTCGGAACTGT...GCTGGCAGGATGAGCAAGTGGGCACTGCCATTCCTGGAGGCACAGAGCCAGGAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS-3UTR GCA 90 bp CTCCTGGCTCTGTGCCTCCAGGAATGGCAGTGCCCACTTGCTCATCCTGCCAGCGGATTATCCGCATGTTaGAAAAGGCCTGGGAACCCC +
Preference number: 4 (lower is better)
Translates to: LLALCLQEWQCPLAHPASGLSAC*KRPGNP
Trigger: GGGGTTCCCAGGCCTTTTGCAACATGCGGATAATCC...GCTGGCAGGATGAGCAAGTGGGCACTGCCATTCCTGGAGGCACAGAGCCAGGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS-3UTR GCA 90 bp GCCAGCACCCTCATCAGAAGTAGATGTGGCTGCTCTGCCAGGCCTCCACCAGTGTCGTGTGTGAATCTGTaGCCACGAGGCTGTCTGGGT +
Preference number: 4 (lower is better)
Translates to: ASTLIRSRCGCSARPPPVSCVNL*PRGCLG
Trigger: ACCCAGACAGCCTCGTGGGCACAGATTCACACACGA...CACTGGTGGAGGCCTGGCAGAGCAGCCACATCTACTTCTGATGAGGGTGCTGGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS-3UTR GCA 90 bp TGGCTCTGTGCCTCCAGGAATGGCAGTGCCCACTTGCTCATCCTGCCAGCACCCAGTTGCTGCGGTGAATaGGCTCATAGCTCTCTGCCA +
Preference number: 4 (lower is better)
Translates to: WLCASRNGSAHLLILPAPSCCGE*AHSSLP
Trigger: TGGCAGAGAGCTATGAGCGCATTCACCGCAGCAACT...GGGTGCTGGCAGGATGAGCAAGTGGGCACTGCCATTCCTGGAGGCACAGAGCCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS-3UTR GCA 90 bp ACCCTCATCAGAAGTAGATGTGGCTGCTCTGCCAGGCCTCCACCAGTGGGGGCCCCATGCCAACCAAGTTaGTGCGGTGAATGCGCTCAT +
Preference number: 4 (lower is better)
Translates to: TLIRSRCGCSARPPPVGAPCQPS*CGECAH
Trigger: ATGAGCGCATTCACCGCAGCAACTTGGTTGGCATGG...GGCCCCCACTGGTGGAGGCCTGGCAGAGCAGCCACATCTACTTCTGATGAGGGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS-3UTR CCA 90 bp TCCTGGCTCTGTGCCTCCAGGAATGGCAGTGCCCACTTGCTCATCCTGCCAGCAGAAGAACCTCTTTCCTaGTTGGGCAGCGTCCAAGGG +
Preference number: 4 (lower is better)
Translates to: SWLCASRNGSAHLLILPAEEPLS*LGSVQG
Trigger: CCCTTGGACGCTGCCCAACCAGGAAAGAGGTTCTTC...TGCTGGCAGGATGAGCAAGTGGGCACTGCCATTCCTGGAGGCACAGAGCCAGGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS-3UTR CCA 90 bp CATCCTGCCAGCACCCTCATCAGAAGTAGATGTGGCTGCTCTGCCAGGCCTCCAGCCCACGAGGCTGTCTaGGTAGTAGCATCCATCCTG +
Preference number: 4 (lower is better)
Translates to: HPASTLIRSRCGCSARPPAHEAV*VVASIL
Trigger: CAGGATGGATGCTACTACCCAGACAGCCTCGTGGGC...TGGAGGCCTGGCAGAGCAGCCACATCTACTTCTGATGAGGGTGCTGGCAGGATG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS-3UTR CCA 90 bp TGGCTCTGTGCCTCCAGGAATGGCAGTGCCCACTTGCTCATCCTGCCAGCACCCCCAGGCCGTCAATCATaGTCGTGTGTGAATCTGTGC +
Preference number: 4 (lower is better)
Translates to: WLCASRNGSAHLLILPAPPGRQS*SCVNLC
Trigger: GCACAGATTCACACACGACCATGATTGACGGCCTGG...GGGTGCTGGCAGGATGAGCAAGTGGGCACTGCCATTCCTGGAGGCACAGAGCCA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS-3UTR TCA 90 bp ACCCTCATCAGAAGTAGATGTGGCTGCTCTGCCAGGCCTCCACCAGTGGGGGCCACTTCTGAATGTGCTTaGCTTTGTCTTCCTCGCGGC +
Preference number: 4 (lower is better)
Translates to: TLIRSRCGCSARPPPVGATSECA*LCLPRG
Trigger: GCCGCGAGGAAGACAAAGTCAAGCACATTCAGAAGT...GGCCCCCACTGGTGGAGGCCTGGCAGAGCAGCCACATCTACTTCTGATGAGGGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS-3UTR TCA 90 bp CTCCAGGAATGGCAGTGCCCACTTGCTCATCCTGCCAGCACCCTCATCAGAAGTCTGCCAGGACAGCTTTaGTTCCCAGCAGGAAAGGGC +
Preference number: 4 (lower is better)
Translates to: LQEWQCPLAHPASTLIRSLPGQL*FPAGKG
Trigger: GCCCTTTCCTGCTGGGAATCAAAGCTGTCCTGGCAG...ACTTCTGATGAGGGTGCTGGCAGGATGAGCAAGTGGGCACTGCCATTCCTGGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS-3UTR GCA 90 bp ACTGGTGTAATACACGGAGGACTGGGCTCTCCAGGGAAGGGTGTCACCGAGCAGAACCGGGAAGAAGGCTaGTGTCGCACCATACTCTGG +
Preference number: 4 (lower is better)
Translates to: TGVIHGGLGSPGKGVTEQNREEG*CRTILW
Trigger: CCAGAGTATGGTGCGACAGCAGCCTTCTTCCCGGTT...CTGCTCGGTGACACCCTTCCCTGGAGAGCCCAGTCCTCCGTGTATTACACCAGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS-3UTR GCA 90 bp CTCCAGGAATGGCAGTGCCCACTTGCTCATCCTGCCAGCACCCTCATCAGAAGTGAAGGGGTCCACTGTTaGCGATGCAGGTCATGCAGC +
Preference number: 4 (lower is better)
Translates to: LQEWQCPLAHPASTLIRSEGVHC*RCRSCS
Trigger: GCTGCATGACCTGCATCGGCAACAGTGGACCCCTTC...ACTTCTGATGAGGGTGCTGGCAGGATGAGCAAGTGGGCACTGCCATTCCTGGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS-3UTR TCA 90 bp TGTGGCTGCTCTGCCAGGCCTCCACCAGTGGGGGCCTGGTTCCTCATTGGGTCTTGTCTGCCCTTCTGTTaGAATCAACCTGGATGGAAT +
Preference number: 4 (lower is better)
Translates to: CGCSARPPPVGAWFLIGSCLPFC*NQPGWN
Trigger: ATTCCATCCAGGTTGATTTCAACAGAAGGGCAGACA...AGACCCAATGAGGAACCAGGCCCCCACTGGTGGAGGCCTGGCAGAGCAGCCACA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS-3UTR TCA 90 bp CTCCTGGCTCTGTGCCTCCAGGAATGGCAGTGCCCACTTGCTCATCCTGCCAGCGAGACAGGCTGGTTTTaGTGTAAGGCTTCACACTCA +
Preference number: 4 (lower is better)
Translates to: LLALCLQEWQCPLAHPASETGWF*CKASHS
Trigger: TGAGTGTGAAGCCTTACATCAAAACCAGCCTGTCTC...GCTGGCAGGATGAGCAAGTGGGCACTGCCATTCCTGGAGGCACAGAGCCAGGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS-3UTR CCA 90 bp TGGCTCTGTGCCTCCAGGAATGGCAGTGCCCACTTGCTCATCCTGCCAGCACCCCAGTATGACTCGGGCTaGCTTAAACGGCACTTCTAT +
Preference number: 4 (lower is better)
Translates to: WLCASRNGSAHLLILPAPQYDSG*LKRHFY
Trigger: ATAGAAGTGCCGTTTAAGCCAGCCCGAGTCATACTG...GGGTGCTGGCAGGATGAGCAAGTGGGCACTGCCATTCCTGGAGGCACAGAGCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS-3UTR CCA 90 bp CCAGGCCTCCACCAGTGGGGGCCTGGTTCCTCATTGGGTCTAGCACCAAGTGCGGTCATTGTGACGGTCTaGAGCAACTTGGAAACCTTT +
Preference number: 4 (lower is better)
Translates to: PGLHQWGPGSSLGLAPSAVIVTV*SNLETF
Trigger: AAAGGTTTCCAAGTTGCTCCAGACCGTCACAATGAC...CGCACTTGGTGCTAGACCCAATGAGGAACCAGGCCCCCACTGGTGGAGGCCTGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS-3UTR TCA 90 bp AGTAGATGTGGCTGCTCTGCCAGGCCTCCACCAGTGGGGGCCTGGTTCCTCATTATTACCACAGAGCCATaGGCGAGAGTGAATTCACTG +
Preference number: 4 (lower is better)
Translates to: SRCGCSARPPPVGAWFLIITTEP*ARVNSL
Trigger: CAGTGAATTCACTCTCGCTCATGGCTCTGTGGTAAT...AATGAGGAACCAGGCCCCCACTGGTGGAGGCCTGGCAGAGCAGCCACATCTACT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS-3UTR TCA 90 bp CTGGGCTCTCCAGGGAAGGGTGTCACCGAGCAGAGACAAACACAGAACAACAGAGGGAGATGGACAGTCTaGGGTGCCTGCTTGTTCAGA +
Preference number: 4 (lower is better)
Translates to: LGSPGKGVTEQRQTQNNRGRWTV*GACLFR
Trigger: TCTGAACAAGCAGGCACCTCAGACTGTCCATCTCCC...TCTGTTGTTCTGTGTTTGTCTCTGCTCGGTGACACCCTTCCCTGGAGAGCCCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS-3UTR CCA 90 bp ACTGGTGTAATACACGGAGGACTGGGCTCTCCAGGGAAGGGTGTCACCGAGCAGCATAGGCATCCACTATaGACTTGGGTGGCTGGAGAT +
Preference number: 4 (lower is better)
Translates to: TGVIHGGLGSPGKGVTEQHRHPL*TWVAGD
Trigger: ATCTCCAGCCACCCAAGTCCATAGTGGATGCCTATG...CTGCTCGGTGACACCCTTCCCTGGAGAGCCCAGTCCTCCGTGTATTACACCAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS-3UTR TCA 90 bp GGGCTCTCCAGGGAAGGGTGTCACCGAGCAGAGACAAACACAGAACAACAGAAAGGTTCACTTGGTGAATaGTTCCCGAGCCAGGAGGGA +
Preference number: 4 (lower is better)
Translates to: GLSREGCHRAETNTEQQKGSLGE*FPSQEG
Trigger: TCCCTCCTGGCTCGGGAATCATTCACCAAGTGAACC...TTTCTGTTGTTCTGTGTTTGTCTCTGCTCGGTGACACCCTTCCCTGGAGAGCCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS-3UTR GCA 90 bp CTCCTGGCTCTGTGCCTCCAGGAATGGCAGTGCCCACTTGCTCATCCTGCCAGCAAAACTCCACAAATTTaGCCACAACTCCCACTTGTC +
Preference number: 4 (lower is better)
Translates to: LLALCLQEWQCPLAHPASKTPQI*PQLPLV
Trigger: GACAAGTGGGAGTTGTGGGCAAATTTGTGGAGTTTT...GCTGGCAGGATGAGCAAGTGGGCACTGCCATTCCTGGAGGCACAGAGCCAGGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS-3UTR GCA 90 bp ACTGGTGTAATACACGGAGGACTGGGCTCTCCAGGGAAGGGTGTCACCGAGCAGGTCTTTTGGGTCCACTaGAGCAAGGCACAACTGTTT +
Preference number: 4 (lower is better)
Translates to: TGVIHGGLGSPGKGVTEQVFWVH*SKAQLF
Trigger: AAACAGTTGTGCCTTGCTGCAGTGGACCCAAAAGAC...CTGCTCGGTGACACCCTTCCCTGGAGAGCCCAGTCCTCCGTGTATTACACCAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS-3UTR GCA 90 bp CTCTGTGCCTCCAGGAATGGCAGTGCCCACTTGCTCATCCTGCCAGCACCCTCAAATCCTGACGGTGCCTaGAATCGCATATGCTATTAC +
Preference number: 4 (lower is better)
Translates to: LCASRNGSAHLLILPAPSNPDGA*NRICYY
Trigger: GTAATAGCATATGCGATTGCAGGCACCGTCAGGATT...TGAGGGTGCTGGCAGGATGAGCAAGTGGGCACTGCCATTCCTGGAGGCACAGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS-3UTR GCA 90 bp AGTAGATGTGGCTGCTCTGCCAGGCCTCCACCAGTGGGGGCCTGGTTCCTCATTATGGACAGTCTGAGGTaGCTGCTTGTTCAGAAACTT +
Preference number: 4 (lower is better)
Translates to: SRCGCSARPPPVGAWFLIMDSLR*LLVQKL
Trigger: AAGTTTCTGAACAAGCAGGCACCTCAGACTGTCCAT...AATGAGGAACCAGGCCCCCACTGGTGGAGGCCTGGCAGAGCAGCCACATCTACT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS-3UTR CCA 90 bp GTTAACACTGGTGTAATACACGGAGGACTGGGCTCTCCAGGGAAGGGTGTCACCTGTCCTGAGGTCTTTTaGGTCCACTGCAGCAAGGCA +
Preference number: 4 (lower is better)
Translates to: VNTGVIHGGLGSPGKGVTCPEVF*VHCSKA
Trigger: TGCCTTGCTGCAGTGGACCCAAAAGACCTCAGGACA...GGTGACACCCTTCCCTGGAGAGCCCAGTCCTCCGTGTATTACACCAGTGTTAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS-3UTR TCA 90 bp CTCCTGGCTCTGTGCCTCCAGGAATGGCAGTGCCCACTTGCTCATCCTGCCAGCTCAAACTCCAGGTCTTaGTTCTTCTGTAAACTGTCT +
Preference number: 4 (lower is better)
Translates to: LLALCLQEWQCPLAHPASSNSRS*FFCKLS
Trigger: AGACAGTTTACAGAAGAATCAAGACCTGGAGTTTGA...GCTGGCAGGATGAGCAAGTGGGCACTGCCATTCCTGGAGGCACAGAGCCAGGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS-3UTR TCA 90 bp AGGAATGGCAGTGCCCACTTGCTCATCCTGCCAGCACCCTCATCAGAAGTAGATAATCATGGTCGTGTGTaGATCTGTGCCCACGAGGCT +
Preference number: 4 (lower is better)
Translates to: RNGSAHLLILPAPSSEVDNHGRV*ICAHEA
Trigger: AGCCTCGTGGGCACAGATTCACACACGACCATGATT...ATCTACTTCTGATGAGGGTGCTGGCAGGATGAGCAAGTGGGCACTGCCATTCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS-3UTR GCA 90 bp GCCAGCACCCTCATCAGAAGTAGATGTGGCTGCTCTGCCAGGCCTCCACCAGTGAAACCTTTAAATCCTTaGTTGGCTCCAAGGCAGCTT +
Preference number: 4 (lower is better)
Translates to: ASTLIRSRCGCSARPPPVKPLNP*LAPRQL
Trigger: AAGCTGCCTTGGAGCCAAGCAAGGATTTAAAGGTTT...CACTGGTGGAGGCCTGGCAGAGCAGCCACATCTACTTCTGATGAGGGTGCTGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS-3UTR TCA 90 bp GCCAGCACCCTCATCAGAAGTAGATGTGGCTGCTCTGCCAGGCCTCCACCAGTGCCAATTTATTCAAGTTaGAGAACCTCTTTCCTGGTT +
Preference number: 4 (lower is better)
Translates to: ASTLIRSRCGCSARPPPVPIYSS*RTSFLV
Trigger: AACCAGGAAAGAGGTTCTTCAACTTGAATAAATTGG...CACTGGTGGAGGCCTGGCAGAGCAGCCACATCTACTTCTGATGAGGGTGCTGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS-3UTR TCA 90 bp GTTAACACTGGTGTAATACACGGAGGACTGGGCTCTCCAGGGAAGGGTGTCACCTCAACCTGGATGGAATaGTCAATTACAAGGTCAGCG +
Preference number: 4 (lower is better)
Translates to: VNTGVIHGGLGSPGKGVTSTWME*SITRSA
Trigger: CGCTGACCTTGTAATTGATCATTCCATCCAGGTTGA...GGTGACACCCTTCCCTGGAGAGCCCAGTCCTCCGTGTATTACACCAGTGTTAAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS-3UTR GCA 90 bp ACTGGTGTAATACACGGAGGACTGGGCTCTCCAGGGAAGGGTGTCACCGAGCAGATCAAACACTACTCTTaGCAAATACTCCAGGTTCAC +
Preference number: 4 (lower is better)
Translates to: TGVIHGGLGSPGKGVTEQIKHYS*QILQVH
Trigger: GTGAACCTGGAGTATTTGGCAAGAGTAGTGTTTGAT...CTGCTCGGTGACACCCTTCCCTGGAGAGCCCAGTCCTCCGTGTATTACACCAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS-3UTR CCA 90 bp GGGCTCTCCAGGGAAGGGTGTCACCGAGCAGAGACAAACACAGAACAACAGAAACATCCACTATGGACTTaGGTGGCTGGAGATCTAAAG +
Preference number: 4 (lower is better)
Translates to: GLSREGCHRAETNTEQQKHPLWT*VAGDLK
Trigger: CTTTAGATCTCCAGCCACCCAAGTCCATAGTGGATG...TTTCTGTTGTTCTGTGTTTGTCTCTGCTCGGTGACACCCTTCCCTGGAGAGCCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS-3UTR CCA 90 bp GTCTATGCTATGTCAGTTAACACTGGTGTAATACACGGAGGACTGGGCTCTCCAAACCTCATCACGGCCTaGAAGGTCTTCCCAGTGTCC +
Preference number: 4 (lower is better)
Translates to: VYAMSVNTGVIHGGLGSPNLITA*KVFPVS
Trigger: GGACACTGGGAAGACCTTCCAGGCCGTGATGAGGTT...TGGAGAGCCCAGTCCTCCGTGTATTACACCAGTGTTAACTGACATAGCATAGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS-3UTR TCA 90 bp GTCTATGCTATGTCAGTTAACACTGGTGTAATACACGGAGGACTGGGCTCTCCAATCAAGGGTTTCTCCTaGGGGGAGATGGACAGTCTG +
Preference number: 4 (lower is better)
Translates to: VYAMSVNTGVIHGGLGSPIKGFS*GEMDSL
Trigger: CAGACTGTCCATCTCCCCTCAGGAGAAACCCTTGAT...TGGAGAGCCCAGTCCTCCGTGTATTACACCAGTGTTAACTGACATAGCATAGAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS-3UTR GCA 90 bp AGGAATGGCAGTGCCCACTTGCTCATCCTGCCAGCACCCTCATCAGAAGTAGATTGTTTCTTGCAATATTaGCGGCGGGAGAGATATGGT +
Preference number: 4 (lower is better)
Translates to: RNGSAHLLILPAPSSEVDCFLQY*RRERYG
Trigger: ACCATATCTCTCCCGCCGGCAATATTGCAAGAAACA...ATCTACTTCTGATGAGGGTGCTGGCAGGATGAGCAAGTGGGCACTGCCATTCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS-3UTR TCA 90 bp TGGTACTACGGACCTTCCCGTGATTCTAGAATCCAGATTACAGAAAGGGATAAAGTCTCGGGAGCTGCCTaGACCGTATTCTTTCCCAGC +
Preference number: 4 (lower is better)
Translates to: WYYGPSRDSRIQITERDKVSGAA*TVFFPS
Trigger: GCTGGGAAAGAATACGGTTCAGGCAGCTCCCGAGAC...TTTATCCCTTTCTGTAATCTGGATTCTAGAATCACGGGAAGGTCCGTAGTACCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS-3UTR TCA 90 bp TGGTACTACGGACCTTCCCGTGATTCTAGAATCCAGATTACAGAAAGGGATAAAACCGCGACTTTGTCCTaGGGTCTTTTGGGTCCACTG +
Preference number: 4 (lower is better)
Translates to: WYYGPSRDSRIQITERDKTATLS*GLLGPL
Trigger: CAGTGGACCCAAAAGACCTCAGGACAAAGTCGCGGT...TTTATCCCTTTCTGTAATCTGGATTCTAGAATCACGGGAAGGTCCGTAGTACCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS-3UTR GCA 90 bp AAGCGAGTTCTCTTTGGTACTACGGACCTTCCCGTGATTCTAGAATCCAGATTATCCTTCAGAAACACTTaGCGGCCCTGTGCGTTCACT +
Preference number: 4 (lower is better)
Translates to: KRVLFGTTDLPVILESRLSFRNT*RPCAFT
Trigger: AGTGAACGCACAGGGCCGGCAAGTGTTTCTGAAGGA...TAATCTGGATTCTAGAATCACGGGAAGGTCCGTAGTACCAAAGAGAACTCGCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS-3UTR GCA 90 bp CGTGACTTTAAAGAGAAGCGAGTTCTCTTTGGTACTACGGACCTTCCCGTGATTGAGTCCCAGAGAGTCTaGAGTTTCACCAGGGAGATA +
Preference number: 4 (lower is better)
Translates to: RDFKEKRVLFGTTDLPVIESQRV*SFTREI
Trigger: TATCTCCCTGGTGAAACTGCAGACTCTCTGGGACTC...AATCACGGGAAGGTCCGTAGTACCAAAGAGAACTCGCTTCTCTTTAAAGTCACG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS-3UTR CCA 90 bp GTTAACACTGGTGTAATACACGGAGGACTGGGCTCTCCAGGGAAGGGTGTCACCGCTTTCAAAGAATGGTaGCGACTTAATGTAAGTAGA +
Preference number: 4 (lower is better)
Translates to: VNTGVIHGGLGSPGKGVTAFKEW*RLNVSR
Trigger: TCTACTTACATTAAGTCGCCACCATTCTTTGAAAGC...GGTGACACCCTTCCCTGGAGAGCCCAGTCCTCCGTGTATTACACCAGTGTTAAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS-3UTR TCA 90 bp TGGTACTACGGACCTTCCCGTGATTCTAGAATCCAGATTACAGAAAGGGATAAAACTCCACAACCTGAGTaGAGTCTGGGTCTTGAGAGG +
Preference number: 4 (lower is better)
Translates to: WYYGPSRDSRIQITERDKTPQPE*SLGLER
Trigger: CCTCTCAAGACCCAGACTTCACTCAGGTTGTGGAGT...TTTATCCCTTTCTGTAATCTGGATTCTAGAATCACGGGAAGGTCCGTAGTACCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS-3UTR GCA 90 bp CTGGGCTCTCCAGGGAAGGGTGTCACCGAGCAGAGACAAACACAGAACAACAGATCTATGTTCTTATGTTaGATGACATTCCAATTCAGG +
Preference number: 4 (lower is better)
Translates to: LGSPGKGVTEQRQTQNNRSMFLC*MTFQFR
Trigger: CCTGAATTGGAATGTCATGCAACATAAGAACATAGA...TCTGTTGTTCTGTGTTTGTCTCTGCTCGGTGACACCCTTCCCTGGAGAGCCCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS-3UTR GCA 90 bp TTTGGTACTACGGACCTTCCCGTGATTCTAGAATCCAGATTACAGAAAGGGATAGCGCTCATAGCTCTCTaGCAGGACAGCTTTGATTCC +
Preference number: 4 (lower is better)
Translates to: FGTTDLPVILESRLQKGIALIAL*QDSFDS
Trigger: GGAATCAAAGCTGTCCTGGCAGAGAGCTATGAGCGC...TATCCCTTTCTGTAATCTGGATTCTAGAATCACGGGAAGGTCCGTAGTACCAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS-3UTR GCA 90 bp TGGTACTACGGACCTTCCCGTGATTCTAGAATCCAGATTACAGAAAGGGATAAATGCCAACCAAGTTGCTaGGGTGAATGCGCTCATAGC +
Preference number: 4 (lower is better)
Translates to: WYYGPSRDSRIQITERDKCQPSC*GECAHS
Trigger: GCTATGAGCGCATTCACCGCAGCAACTTGGTTGGCA...TTTATCCCTTTCTGTAATCTGGATTCTAGAATCACGGGAAGGTCCGTAGTACCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS-3UTR TCA 90 bp TGGTACTACGGACCTTCCCGTGATTCTAGAATCCAGATTACAGAAAGGGATAAACATTGTGGAAGTACGTaGGCTCCACATCAGTGTCGA +
Preference number: 4 (lower is better)
Translates to: WYYGPSRDSRIQITERDKHCGST*APHQCR
Trigger: TCGACACTGATGTGGAGCTCACGTACTTCCACAATG...TTTATCCCTTTCTGTAATCTGGATTCTAGAATCACGGGAAGGTCCGTAGTACCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS-3UTR CCA 90 bp TTTGGTACTACGGACCTTCCCGTGATTCTAGAATCCAGATTACAGAAAGGGATAAGGATGCCTCCATTGTaGAAGTACGTGAGCTCCACA +
Preference number: 4 (lower is better)
Translates to: FGTTDLPVILESRLQKGIRMPPL*KYVSST
Trigger: TGTGGAGCTCACGTACTTCCACAATGGAGGCATCCT...TATCCCTTTCTGTAATCTGGATTCTAGAATCACGGGAAGGTCCGTAGTACCAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS-3UTR TCA 90 bp TGGTACTACGGACCTTCCCGTGATTCTAGAATCCAGATTACAGAAAGGGATAAACTTGAGAGGTGTCGTTaGAATCTCGAAACATGCCTA +
Preference number: 4 (lower is better)
Translates to: WYYGPSRDSRIQITERDKLERCR*NLETCL
Trigger: TAGGCATGTTTCGAGATTTCAACGACACCTCTCAAG...TTTATCCCTTTCTGTAATCTGGATTCTAGAATCACGGGAAGGTCCGTAGTACCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS-3UTR CAA 90 bp ACCCTCATCAGAAGTAGATGTGGCTGCTCTGCCAGGCCTCCACCAGTGGGGGCCGGAAGGGGTCCACTGTaGCCGATGCAGGTCATGCAG +
Preference number: 5 (lower is better)
Translates to: TLIRSRCGCSARPPPVGAGRGPL*PMQVMQ
Trigger: CTGCATGACCTGCATCGGCAACAGTGGACCCCTTCC...GGCCCCCACTGGTGGAGGCCTGGCAGAGCAGCCACATCTACTTCTGATGAGGGT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS-3UTR CAA 90 bp TGTGGCTGCTCTGCCAGGCCTCCACCAGTGGGGGCCTGGTTCCTCATTGGGTCTTCTGCCAGGACAGCTTaGATTCCCAGCAGGAAAGGG +
Preference number: 5 (lower is better)
Translates to: CGCSARPPPVGAWFLIGSSARTA*IPSRKG
Trigger: CCCTTTCCTGCTGGGAATCAAAGCTGTCCTGGCAGA...AGACCCAATGAGGAACCAGGCCCCCACTGGTGGAGGCCTGGCAGAGCAGCCACA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS TCA 90 bp TCCCAGCAGGAAAGGGCCTTTGGCTGCCCAGTCTCGGGAGCTGCCTaGACCGTATTCTTTCCCAGCCAGAACAATCAGGGGAAGTCCAGC +
Preference number: 5 (lower is better)
Translates to: SQQERAFGCPVSGAA*TVFFPSQNNQGKSS
Trigger: GCTGGACTTCCCCTGATTGTTCTGGCTGGGAAAGAATACGGTTCAGGCAGCTCCCGAGACTGGGCAGCCAAAGGCCCTTTCCTGCTGGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS-3UTR CAA 90 bp ACTGGTGTAATACACGGAGGACTGGGCTCTCCAGGGAAGGGTGTCACCGAGCAGTTCAGCAAGCGAATGTaGGCAAATGTCCCCCGGGCC +
Preference number: 5 (lower is better)
Translates to: TGVIHGGLGSPGKGVTEQFSKRM*ANVPRA
Trigger: GGCCCGGGGGACATTTGCCAACATTCGCTTGCTGAA...CTGCTCGGTGACACCCTTCCCTGGAGAGCCCAGTCCTCCGTGTATTACACCAGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS GCA 90 bp CGACCACAGGTTCAGGAAGGGGTCCACTGTTGCCGATGCAGGTCATaGAGCCGTAGCCCACCACATCAAACCCTAACTGGGACAGGTAAG +
Preference number: 5 (lower is better)
Translates to: RPQVQEGVHCCRCRS*SRSPPHQTLTGTGK
Trigger: CTTACCTGTCCCAGTTAGGGTTTGATGTGGTGGGCTACGGCTGCATGACCTGCATCGGCAACAGTGGACCCCTTCCTGAACCTGTGGTCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS GCA 90 bp CCCCATGCCAACCAAGTTGCTGCGGTGAATGCGCTCATAGCTCTCTaGCAGGACAGCTTTGATTCCCAGCAGGAAAGGGCCTTTGGCTGC +
Preference number: 5 (lower is better)
Translates to: PHANQVAAVNALIAL*QDSFDSQQERAFGC
Trigger: GCAGCCAAAGGCCCTTTCCTGCTGGGAATCAAAGCTGTCCTGGCAGAGAGCTATGAGCGCATTCACCGCAGCAACTTGGTTGGCATGGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS TCA 90 bp CACACCCCAACCAAGAACTCCCAGGCCGTCAATCATGGTCGTGTGTaGATCTGTGCCCACGAGGCTGTCTGGGTAGTAGCATCCATCCTG +
Preference number: 5 (lower is better)
Translates to: HTPTKNSQAVNHGRV*ICAHEAVWVVASIL
Trigger: CAGGATGGATGCTACTACCCAGACAGCCTCGTGGGCACAGATTCACACACGACCATGATTGACGGCCTGGGAGTTCTTGGTTGGGGTGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS-3UTR CAA 90 bp CTCCAGGAATGGCAGTGCCCACTTGCTCATCCTGCCAGCACCCTCATCAGAAGTGGGATTATCCGCATGTaGCAAAAGGCCTGGGAACCC +
Preference number: 5 (lower is better)
Translates to: LQEWQCPLAHPASTLIRSGIIRM*QKAWEP
Trigger: GGGTTCCCAGGCCTTTTGCAACATGCGGATAATCCC...ACTTCTGATGAGGGTGCTGGCAGGATGAGCAAGTGGGCACTGCCATTCCTGGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS-3UTR CAA 90 bp CATCCTGCCAGCACCCTCATCAGAAGTAGATGTGGCTGCTCTGCCAGGCCTCCATTCAGGATGCCTCCATaGTGGAAGTACGTGAGCTCC +
Preference number: 5 (lower is better)
Translates to: HPASTLIRSRCGCSARPPFRMPP*WKYVSS
Trigger: GGAGCTCACGTACTTCCACAATGGAGGCATCCTGAA...TGGAGGCCTGGCAGAGCAGCCACATCTACTTCTGATGAGGGTGCTGGCAGGATG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS GCA 90 bp ATCTCGCGTGGGCCAGATGTCCTTCAGAAACACTTGCCGGCCCTGTaGGTTCACTCCCAAAGGCTCTTTCTCGAAGTCAATCCTGACGGT +
Preference number: 5 (lower is better)
Translates to: ISRGPDVLQKHLPAL*VHSQRLFLEVNPDG
Trigger: ACCGTCAGGATTGACTTCGAGAAAGAGCCTTTGGGAGTGAACGCACAGGGCCGGCAAGTGTTTCTGAAGGACATCTGGCCCACGCGAGAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS GCA 90 bp AGTCTGCAGTTTCACCAGGGAGATACTCAAGGGGGATCACCCCCATaGCAACCAAGTTGCTGCGGTGAATGCGCTCATAGCTCTCTGCCA +
Preference number: 5 (lower is better)
Translates to: SLQFHQGDTQGGSPP*QPSCCGECAHSSLP
Trigger: TGGCAGAGAGCTATGAGCGCATTCACCGCAGCAACTTGGTTGGCATGGGGGTGATCCCCCTTGAGTATCTCCCTGGTGAAACTGCAGACT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS CCA 90 bp ACCTCCTTAAACATCCCGGGGATGACATGCTGCCTTTCCACCGCCTaGATCTCATCTCGCGTGGGCCAGATGTCCTTCAGAAACACTTGC +
Preference number: 5 (lower is better)
Translates to: TSLNIPGMTCCLSTA*ISSRVGQMSFRNTC
Trigger: GCAAGTGTTTCTGAAGGACATCTGGCCCACGCGAGATGAGATCCAGGCGGTGGAAAGGCAGCATGTCATCCCCGGGATGTTTAAGGAGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS CCA 90 bp TGGAAGTACGTGAGCTCCACATCAGTGTCGAACCTCATCACGGCCTaGAAGGTCTTCCCAGTGTCCAGCTTGATCTGCACCGTCATGCGA +
Preference number: 5 (lower is better)
Translates to: WKYVSSTSVSNLITA*KVFPVSSLICTVMR
Trigger: TCGCATGACGGTGCAGATCAAGCTGGACACTGGGAAGACCTTCCAGGCCGTGATGAGGTTCGACACTGATGTGGAGCTCACGTACTTCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS GCA 90 bp CTGCAGCAGGTACGCGATGCTAACTTCATCAACCGGGAAGAAGGCTaGTGTCGCACCATACTCTGGGCACATATTGGCAATCGTAGCTCG +
Preference number: 5 (lower is better)
Translates to: LQQVRDANFINREEG*CRTILWAHIGNRSS
Trigger: CGAGCTACGATTGCCAATATGTGCCCAGAGTATGGTGCGACAGCAGCCTTCTTCCCGGTTGATGAAGTTAGCATCGCGTACCTGCTGCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS GCA 90 bp AACCTCATCACGGCCTGGAAGGTCTTCCCAGTGTCCAGCTTGATCTaGACCGTCATGCGAGGCTTGAGGTCTTCAGGGATGTTGATAGTG +
Preference number: 5 (lower is better)
Translates to: NLITAWKVFPVSSLI*TVMRGLRSSGMLIV
Trigger: CACTATCAACATCCCTGAAGACCTCAAGCCTCGCATGACGGTGCAGATCAAGCTGGACACTGGGAAGACCTTCCAGGCCGTGATGAGGTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS CCA 90 bp CCGTATTCTTTCCCAGCCAGAACAATCAGGGGAAGTCCAGCCTGCTaGTACCGCTCAGCAGCGTCGAATACATCAAGGGTTTCTCCTGAG +
Preference number: 5 (lower is better)
Translates to: PYSFPARTIRGSPAC*YRSAASNTSRVSPE
Trigger: CTCAGGAGAAACCCTTGATGTATTCGACGCTGCTGAGCGGTACCAGCAGGCTGGACTTCCCCTGATTGTTCTGGCTGGGAAAGAATACGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS-3UTR CAA 90 bp GTTAACACTGGTGTAATACACGGAGGACTGGGCTCTCCAGGGAAGGGTGTCACCTCACAGCATCGCGCATaGCTGCAAAATCCACCACAG +
Preference number: 5 (lower is better)
Translates to: VNTGVIHGGLGSPGKGVTSQHRA*LQNPPQ
Trigger: CTGTGGTGGATTTTGCAGCAATGCGCGATGCTGTGA...GGTGACACCCTTCCCTGGAGAGCCCAGTCCTCCGTGTATTACACCAGTGTTAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS-3UTR CAA 90 bp CTCCTGGCTCTGTGCCTCCAGGAATGGCAGTGCCCACTTGCTCATCCTGCCAGCGATCAAACACTACTCTaGCCAAATACTCCAGGTTCA +
Preference number: 5 (lower is better)
Translates to: LLALCLQEWQCPLAHPASDQTLL*PNTPGS
Trigger: TGAACCTGGAGTATTTGGCAAGAGTAGTGTTTGATC...GCTGGCAGGATGAGCAAGTGGGCACTGCCATTCCTGGAGGCACAGAGCCAGGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS-3UTR CAA 90 bp ACTGGTGTAATACACGGAGGACTGGGCTCTCCAGGGAAGGGTGTCACCGAGCAGAACATCACGGATGGATaGCTGGTGTTTGTGCAGCTA +
Preference number: 5 (lower is better)
Translates to: TGVIHGGLGSPGKGVTEQNITDG*LVFVQL
Trigger: TAGCTGCACAAACACCAGCAATCCATCCGTGATGTT...CTGCTCGGTGACACCCTTCCCTGGAGAGCCCAGTCCTCCGTGTATTACACCAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS-3UTR CAA 90 bp GTCTATGCTATGTCAGTTAACACTGGTGTAATACACGGAGGACTGGGCTCTCCAAGCAGGAAAGGGCCTTaGGCTGCCCAGTCTCGGGAG +
Preference number: 5 (lower is better)
Translates to: VYAMSVNTGVIHGGLGSPSRKGP*AAQSRE
Trigger: CTCCCGAGACTGGGCAGCCAAAGGCCCTTTCCTGCT...TGGAGAGCCCAGTCCTCCGTGTATTACACCAGTGTTAACTGACATAGCATAGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS GCA 90 bp GAACCGTATTCTTTCCCAGCCAGAACAATCAGGGGAAGTCCAGCCTaGTGGTACCGCTCAGCAGCGTCGAATACATCAAGGGTTTCTCCT +
Preference number: 5 (lower is better)
Translates to: EPYSFPARTIRGSPA*WYRSAASNTSRVSP
Trigger: AGGAGAAACCCTTGATGTATTCGACGCTGCTGAGCGGTACCAGCAGGCTGGACTTCCCCTGATTGTTCTGGCTGGGAAAGAATACGGTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS GCA 90 bp GATGTTGATAGTGTATCTTTCCCGACCTGTGAGTCCCAGAGAGTCTaGAGTTTCACCAGGGAGATACTCAAGGGGGATCACCCCCATGCC +
Preference number: 5 (lower is better)
Translates to: DVDSVSFPTCESQRV*SFTREILKGDHPHA
Trigger: GGCATGGGGGTGATCCCCCTTGAGTATCTCCCTGGTGAAACTGCAGACTCTCTGGGACTCACAGGTCGGGAAAGATACACTATCAACATC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS CCA 90 bp ATTGGCAATCGTAGCTCGGTCAGCAATGGACAGCTGAGCCACTCCTaGCCCGAAAAACTCCACAAATTTGCCCACAACTCCCACTTGTCG +
Preference number: 5 (lower is better)
Translates to: IGNRSSVSNGQLSHS*PEKLHKFAHNSHLS
Trigger: CGACAAGTGGGAGTTGTGGGCAAATTTGTGGAGTTTTTCGGGCCAGGAGTGGCTCAGCTGTCCATTGCTGACCGAGCTACGATTGCCAAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS CCA 90 bp GCTAACTTCATCAACCGGGAAGAAGGCTGCTGTCGCACCATACTCTaGGCACATATTGGCAATCGTAGCTCGGTCAGCAATGGACAGCTG +
Preference number: 5 (lower is better)
Translates to: ANFINREEGCCRTIL*AHIGNRSSVSNGQL
Trigger: CAGCTGTCCATTGCTGACCGAGCTACGATTGCCAATATGTGCCCAGAGTATGGTGCGACAGCAGCCTTCTTCCCGGTTGATGAAGTTAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS-3UTR CAA 90 bp CATCCTGCCAGCACCCTCATCAGAAGTAGATGTGGCTGCTCTGCCAGGCCTCCAACGGTCTGGAGCAACTaGGAAACCTTTAAATCCTTG +
Preference number: 5 (lower is better)
Translates to: HPASTLIRSRCGCSARPPTVWSN*ETFKSL
Trigger: CAAGGATTTAAAGGTTTCCAAGTTGCTCCAGACCGT...TGGAGGCCTGGCAGAGCAGCCACATCTACTTCTGATGAGGGTGCTGGCAGGATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS-3UTR CAA 90 bp CTGGGCTCTCCAGGGAAGGGTGTCACCGAGCAGAGACAAACACAGAACAACAGACTGTTTCTTGCAATATaGCCGGCGGGAGAGATATGG +
Preference number: 5 (lower is better)
Translates to: LGSPGKGVTEQRQTQNNRLFLAI*PAGEIW
Trigger: CCATATCTCTCCCGCCGGCAATATTGCAAGAAACAG...TCTGTTGTTCTGTGTTTGTCTCTGCTCGGTGACACCCTTCCCTGGAGAGCCCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS TCA 90 bp TCTGGGCACATATTGGCAATCGTAGCTCGGTCAGCAATGGACAGCTaGGCCACTCCTGGCCCGAAAAACTCCACAAATTTGCCCACAACT +
Preference number: 5 (lower is better)
Translates to: SGHILAIVARSAMDS*ATPGPKNSTNLPTT
Trigger: AGTTGTGGGCAAATTTGTGGAGTTTTTCGGGCCAGGAGTGGCTCAGCTGTCCATTGCTGACCGAGCTACGATTGCCAATATGTGCCCAGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS GCA 90 bp AACCAAGAACTCCCAGGCCGTCAATCATGGTCGTGTGTGAATCTGTaGCCACGAGGCTGTCTGGGTAGTAGCATCCATCCTGATCAAACA +
Preference number: 5 (lower is better)
Translates to: NQELPGRQSWSCVNL*PRGCLGSSIHPDQT
Trigger: TGTTTGATCAGGATGGATGCTACTACCCAGACAGCCTCGTGGGCACAGATTCACACACGACCATGATTGACGGCCTGGGAGTTCTTGGTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS-3UTR CAA 90 bp ACTGGTGTAATACACGGAGGACTGGGCTCTCCAGGGAAGGGTGTCACCGAGCAGGTAAGCGTCCGTATCTaGAGTCCTCCAATTTATTCA +
Preference number: 5 (lower is better)
Translates to: TGVIHGGLGSPGKGVTEQVSVRI*SPPIYS
Trigger: TGAATAAATTGGAGGACTCAAGATACGGACGCTTAC...CTGCTCGGTGACACCCTTCCCTGGAGAGCCCAGTCCTCCGTGTATTACACCAGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS-3UTR CAA 90 bp GTTAACACTGGTGTAATACACGGAGGACTGGGCTCTCCAGGGAAGGGTGTCACCAGTGAAGTCTGGGTCTaGAGAGGTGTCGTTGAAATC +
Preference number: 5 (lower is better)
Translates to: VNTGVIHGGLGSPGKGVTSEVWV*RGVVEI
Trigger: GATTTCAACGACACCTCTCAAGACCCAGACTTCACT...GGTGACACCCTTCCCTGGAGAGCCCAGTCCTCCGTGTATTACACCAGTGTTAAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS TCA 90 bp AATCTCGAAACATGCCTACAGCCTGAAGATACTTCTGAATGTGCTTaGCTTTGTCTTCCTCGCGGCCTGTCTGCAGCAGGTACGCGATGC +
Preference number: 5 (lower is better)
Translates to: NLETCLQPEDTSECA*LCLPRGLSAAGTRC
Trigger: GCATCGCGTACCTGCTGCAGACAGGCCGCGAGGAAGACAAAGTCAAGCACATTCAGAAGTATCTTCAGGCTGTAGGCATGTTTCGAGATT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS TCA 90 bp TCTTTCGGATCATGTAGTTCAGGATGCCTCCATTGTGGAAGTACGTaGGCTCCACATCAGTGTCGAACCTCATCACGGCCTGGAAGGTCT +
Preference number: 5 (lower is better)
Translates to: SFGSCSSGCLHCGST*APHQCRTSSRPGRS
Trigger: AGACCTTCCAGGCCGTGATGAGGTTCGACACTGATGTGGAGCTCACGTACTTCCACAATGGAGGCATCCTGAACTACATGATCCGAAAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS GCA 90 bp TTTCTCCGGATTCCCTCCCAACTTCTTCACAGCATCGCGCATTGCTaGAAAATCCACCACAGCAGGCACACCCGTAAAGTCTTGCAGTAT +
Preference number: 5 (lower is better)
Translates to: FLRIPSQLLHSIAHC*KIHHSRHTRKVLQY
Trigger: ATACTGCAAGACTTTACGGGTGTGCCTGCTGTGGTGGATTTTGCAGCAATGCGCGATGCTGTGAAGAAGTTGGGAGGGAATCCGGAGAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS GCA 90 bp AATTTTCTCCGGATTCCCTCCCAACTTCTTCACAGCATCGCGCATTaGTGCAAAATCCACCACAGCAGGCACACCCGTAAAGTCTTGCAG +
Preference number: 5 (lower is better)
Translates to: NFLRIPSQLLHSIAH*CKIHHSRHTRKVLQ
Trigger: CTGCAAGACTTTACGGGTGTGCCTGCTGTGGTGGATTTTGCAGCAATGCGCGATGCTGTGAAGAAGTTGGGAGGGAATCCGGAGAAAATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS TCA 90 bp GCGTCGAATACATCAAGGGTTTCTCCTGAGGGGAGATGGACAGTCTaGGGTGCCTGCTTGTTCAGAAACTTGTTCAGCAAGCGAATGTTG +
Preference number: 5 (lower is better)
Translates to: ASNTSRVSPEGRWTV*GACLFRNLFSKRML
Trigger: CAACATTCGCTTGCTGAACAAGTTTCTGAACAAGCAGGCACCTCAGACTGTCCATCTCCCCTCAGGAGAAACCCTTGATGTATTCGACGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS GCA 90 bp CGCATTGCTGCAAAATCCACCACAGCAGGCACACCCGTAAAGTCTTaGAGTATGACTCGGGCTGGCTTAAACGGCACTTCTATGTTCTTA +
Preference number: 5 (lower is better)
Translates to: RIAAKSTTAGTPVKS*SMTRAGLNGTSMFL
Trigger: TAAGAACATAGAAGTGCCGTTTAAGCCAGCCCGAGTCATACTGCAAGACTTTACGGGTGTGCCTGCTGTGGTGGATTTTGCAGCAATGCG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS GCA 90 bp CTCTGTTCGTCAAGTAGCGAGCCGCAGGGCTGTTTCTTGCAATATTaGCGGCGGGAGAGATATGGTCCGTTGTTACTGAATCTCCTAAAT +
Preference number: 5 (lower is better)
Translates to: LCSSSSEPQGCFLQY*RRERYGPLLLNLLN
Trigger: ATTTAGGAGATTCAGTAACAACGGACCATATCTCTCCCGCCGGCAATATTGCAAGAAACAGCCCTGCGGCTCGCTACTTGACGAACAGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS-3UTR CAA 90 bp AGAGAAGCGAGTTCTCTTTGGTACTACGGACCTTCCCGTGATTCTAGAATCCAGACTTGTCGGAGGTGCTaGGTAATGGTGAGCACGATG +
Preference number: 5 (lower is better)
Translates to: REASSLWYYGPSRDSRIQTCRRC*VMVSTM
Trigger: CATCGTGCTCACCATTACCAAGCACCTCCGACAAGT...CTGGATTCTAGAATCACGGGAAGGTCCGTAGTACCAAAGAGAACTCGCTTCTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS-3UTR CAA 90 bp AGAGAAGCGAGTTCTCTTTGGTACTACGGACCTTCCCGTGATTCTAGAATCCAGATACTCCAGGTTCACTaGGTGAATGATTCCCGAGCC +
Preference number: 5 (lower is better)
Translates to: REASSLWYYGPSRDSRIQILQVH*VNDSRA
Trigger: GGCTCGGGAATCATTCACCAAGTGAACCTGGAGTAT...CTGGATTCTAGAATCACGGGAAGGTCCGTAGTACCAAAGAGAACTCGCTTCTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS-3UTR CAA 90 bp CTGGGCTCTCCAGGGAAGGGTGTCACCGAGCAGAGACAAACACAGAACAACAGATCCAATTTATTCAAGTaGAAGAACCTCTTTCCTGGT +
Preference number: 5 (lower is better)
Translates to: LGSPGKGVTEQRQTQNNRSNLFK*KNLFPG
Trigger: ACCAGGAAAGAGGTTCTTCAACTTGAATAAATTGGA...TCTGTTGTTCTGTGTTTGTCTCTGCTCGGTGACACCCTTCCCTGGAGAGCCCAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS CCA 90 bp TTCACTGTTACTATAGAGGAACGTCTTGCGGTCATTGTGACGGTCTaGAGCAACTTGGAAACCTTTAAATCCTTGCTTGGCTCCAAGGCA +
Preference number: 5 (lower is better)
Translates to: FTVTIEERLAVIVTV*SNLETFKSLLGSKA
Trigger: TGCCTTGGAGCCAAGCAAGGATTTAAAGGTTTCCAAGTTGCTCCAGACCGTCACAATGACCGCAAGACGTTCCTCTATAGTAACAGTGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS-3UTR CAA 90 bp TTTGGTACTACGGACCTTCCCGTGATTCTAGAATCCAGATTACAGAAAGGGATATACTCTGGGCACATATaGGCAATCGTAGCTCGGTCA +
Preference number: 5 (lower is better)
Translates to: FGTTDLPVILESRLQKGIYSGHI*AIVARS
Trigger: TGACCGAGCTACGATTGCCAATATGTGCCCAGAGTA...TATCCCTTTCTGTAATCTGGATTCTAGAATCACGGGAAGGTCCGTAGTACCAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS TCA 90 bp TTCTGTAAACTGTCTGCCCTTCTGTTGAAATCAACCTGGATGGAATaGTCAATTACAAGGTCAGCGGGGCAGACAGGGTTAATTTTCTCC +
Preference number: 5 (lower is better)
Translates to: FCKLSALLLKSTWME*SITRSAGQTGLIFS
Trigger: GGAGAAAATTAACCCTGTCTGCCCCGCTGACCTTGTAATTGATCATTCCATCCAGGTTGATTTCAACAGAAGGGCAGACAGTTTACAGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS-3UTR CAA 90 bp TTTGGTACTACGGACCTTCCCGTGATTCTAGAATCCAGATTACAGAAAGGGATAGAAACCTTTAAATCCTaGCTTGGCTCCAAGGCAGCT +
Preference number: 5 (lower is better)
Translates to: FGTTDLPVILESRLQKGIETFKS*LGSKAA
Trigger: AGCTGCCTTGGAGCCAAGCAAGGATTTAAAGGTTTC...TATCCCTTTCTGTAATCTGGATTCTAGAATCACGGGAAGGTCCGTAGTACCAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS-3UTR CAA 90 bp CGTGACTTTAAAGAGAAGCGAGTTCTCTTTGGTACTACGGACCTTCCCGTGATTTGCTTGTTCAGAAACTaGTTCAGCAAGCGAATGTTG +
Preference number: 5 (lower is better)
Translates to: RDFKEKRVLFGTTDLPVICLFRN*FSKRML
Trigger: CAACATTCGCTTGCTGAACAAGTTTCTGAACAAGCA...AATCACGGGAAGGTCCGTAGTACCAAAGAGAACTCGCTTCTCTTTAAAGTCACG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS CCA 90 bp TTGTTACTGAATCTCCTAAATTCAGTAGCACATAGGCATCCACTATaGACTTGGGTGGCTGGAGATCTAAAGTCAAGCTTTCAAAGAATG +
Preference number: 5 (lower is better)
Translates to: LLLNLLNSVAHRHPL*TWVAGDLKSSFQRM
Trigger: CATTCTTTGAAAGCTTGACTTTAGATCTCCAGCCACCCAAGTCCATAGTGGATGCCTATGTGCTACTGAATTTAGGAGATTCAGTAACAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS GCA 90 bp AGTATGACTCGGGCTGGCTTAAACGGCACTTCTATGTTCTTATGTTaGATGACATTCCAATTCAGGATATTCTCGATGTCATTTTTCTTC +
Preference number: 5 (lower is better)
Translates to: SMTRAGLNGTSMFLC*MTFQFRIFSMSFFF
Trigger: GAAGAAAAATGACATCGAGAATATCCTGAATTGGAATGTCATGCAACATAAGAACATAGAAGTGCCGTTTAAGCCAGCCCGAGTCATACT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS TCA 90 bp TTTAGAAATTCAAATCGTTCTTTATTTCTTTCAAACTCCAGGTCTTaGTTCTTCTGTAAACTGTCTGCCCTTCTGTTGAAATCAACCTGG +
Preference number: 5 (lower is better)
Translates to: FRNSNRSLFLSNSRS*FFCKLSALLLKSTW
Trigger: CCAGGTTGATTTCAACAGAAGGGCAGACAGTTTACAGAAGAATCAAGACCTGGAGTTTGAAAGAAATAAAGAACGATTTGAATTTCTAAA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS TCA 72 bp CAGACAGAACGCCAACAGCTACGAGGTCTCCCTGGGTaGTTGCCTCGACCACAGGTTCAGGAAGGGGTCCAC +
Preference number: 6 (lower is better)
Translates to: QTERQQLRGLPG*LPRPQVQEGVH
Trigger: GTGGACCCCTTCCTGAACCTGTGGTCGAGGCAATCACCCAGGGAGACCTCGTAGCTGTTGGCGTTCTGTCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS GCA 72 bp CGACCACAGGTTCAGGAAGGGGTCCACTGTTGCCGATaGAGGTCATGCAGCCGTAGCCCACCACATCAAACC +
Preference number: 6 (lower is better)
Translates to: RPQVQEGVHCCR*RSCSRSPPHQT
Trigger: GGTTTGATGTGGTGGGCTACGGCTGCATGACCTGCATCGGCAACAGTGGACCCCTTCCTGAACCTGTGGTCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS GCA 72 bp TTGCCTCGACCACAGGTTCAGGAAGGGGTCCACTGTTaGCGATGCAGGTCATGCAGCCGTAGCCCACCACAT +
Preference number: 6 (lower is better)
Translates to: LPRPQVQEGVHC*RCRSCSRSPPH
Trigger: ATGTGGTGGGCTACGGCTGCATGACCTGCATCGGCAACAGTGGACCCCTTCCTGAACCTGTGGTCGAGGCAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS CCA 72 bp CATGCTGCCTTTCCACCGCCTGGATCTCATCTCGCGTaGGCCAGATGTCCTTCAGAAACACTTGCCGGCCCT +
Preference number: 6 (lower is better)
Translates to: HAAFPPPGSHLA*ARCPSETLAGP
Trigger: AGGGCCGGCAAGTGTTTCTGAAGGACATCTGGCCCACGCGAGATGAGATCCAGGCGGTGGAAAGGCAGCATG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS CAA 90 bp CGCCTGGATCTCATCTCGCGTGGGCCAGATGTCCTTCAGAAACACTaGCCGGCCCTGTGCGTTCACTCCCAAAGGCTCTTTCTCGAAGTC +
Preference number: 6 (lower is better)
Translates to: RLDLISRGPDVLQKH*PALCVHSQRLFLEV
Trigger: GACTTCGAGAAAGAGCCTTTGGGAGTGAACGCACAGGGCCGGCAAGTGTTTCTGAAGGACATCTGGCCCACGCGAGATGAGATCCAGGCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS TCA 72 bp GAAAGGGCCTTTGGCTGCCCAGTCTCGGGAGCTGCCTaGACCGTATTCTTTCCCAGCCAGAACAATCAGGGG +
Preference number: 6 (lower is better)
Translates to: ERAFGCPVSGAA*TVFFPSQNNQG
Trigger: CCCCTGATTGTTCTGGCTGGGAAAGAATACGGTTCAGGCAGCTCCCGAGACTGGGCAGCCAAAGGCCCTTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS GCA 72 bp GTTCAGGAAGGGGTCCACTGTTGCCGATGCAGGTCATaGAGCCGTAGCCCACCACATCAAACCCTAACTGGG +
Preference number: 6 (lower is better)
Translates to: VQEGVHCCRCRS*SRSPPHQTLTG
Trigger: CCCAGTTAGGGTTTGATGTGGTGGGCTACGGCTGCATGACCTGCATCGGCAACAGTGGACCCCTTCCTGAAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS GCA 72 bp ACTCAAGGGGGATCACCCCCATGCCAACCAAGTTGCTaGGGTGAATGCGCTCATAGCTCTCTGCCAGGACAG +
Preference number: 6 (lower is better)
Translates to: TQGGSPPCQPSC*GECAHSSLPGQ
Trigger: CTGTCCTGGCAGAGAGCTATGAGCGCATTCACCGCAGCAACTTGGTTGGCATGGGGGTGATCCCCCTTGAGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS GCA 72 bp ACGGCCTGGAAGGTCTTCCCAGTGTCCAGCTTGATCTaGACCGTCATGCGAGGCTTGAGGTCTTCAGGGATG +
Preference number: 6 (lower is better)
Translates to: TAWKVFPVSSLI*TVMRGLRSSGM
Trigger: CATCCCTGAAGACCTCAAGCCTCGCATGACGGTGCAGATCAAGCTGGACACTGGGAAGACCTTCCAGGCCGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS CCA 72 bp TTCCCAGACAGAACGCCAACAGCTACGAGGTCTCCCTaGGTGATTGCCTCGACCACAGGTTCAGGAAGGGGT +
Preference number: 6 (lower is better)
Translates to: FPDRTPTATRSP*VIASTTGSGRG
Trigger: ACCCCTTCCTGAACCTGTGGTCGAGGCAATCACCCAGGGAGACCTCGTAGCTGTTGGCGTTCTGTCTGGGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS CAA 90 bp GTGTCGAACCTCATCACGGCCTGGAAGGTCTTCCCAGTGTCCAGCTaGATCTGCACCGTCATGCGAGGCTTGAGGTCTTCAGGGATGTTG +
Preference number: 6 (lower is better)
Translates to: VSNLITAWKVFPVSS*ICTVMRGLRSSGML
Trigger: CAACATCCCTGAAGACCTCAAGCCTCGCATGACGGTGCAGATCAAGCTGGACACTGGGAAGACCTTCCAGGCCGTGATGAGGTTCGACAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS GCA 72 bp CTCCCAGGCCGTCAATCATGGTCGTGTGTGAATCTGTaGCCACGAGGCTGTCTGGGTAGTAGCATCCATCCT +
Preference number: 6 (lower is better)
Translates to: LPGRQSWSCVNL*PRGCLGSSIHP
Trigger: AGGATGGATGCTACTACCCAGACAGCCTCGTGGGCACAGATTCACACACGACCATGATTGACGGCCTGGGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS GCA 72 bp TCATCTCGCGTGGGCCAGATGTCCTTCAGAAACACTTaGCGGCCCTGTGCGTTCACTCCCAAAGGCTCTTTC +
Preference number: 6 (lower is better)
Translates to: SSRVGQMSFRNT*RPCAFTPKGSF
Trigger: GAAAGAGCCTTTGGGAGTGAACGCACAGGGCCGGCAAGTGTTTCTGAAGGACATCTGGCCCACGCGAGATGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS GCA 72 bp GCAGGAAAGGGCCTTTGGCTGCCCAGTCTCGGGAGCTaGCTGAACCGTATTCTTTCCCAGCCAGAACAATCA +
Preference number: 6 (lower is better)
Translates to: AGKGLWLPSLGS*LNRILSQPEQS
Trigger: TGATTGTTCTGGCTGGGAAAGAATACGGTTCAGGCAGCTCCCGAGACTGGGCAGCCAAAGGCCCTTTCCTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS GCA 72 bp GATACTCAAGGGGGATCACCCCCATGCCAACCAAGTTaGTGCGGTGAATGCGCTCATAGCTCTCTGCCAGGA +
Preference number: 6 (lower is better)
Translates to: DTQGGSPPCQPS*CGECAHSSLPG
Trigger: TCCTGGCAGAGAGCTATGAGCGCATTCACCGCAGCAACTTGGTTGGCATGGGGGTGATCCCCCTTGAGTATC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS CCA 72 bp GTGAGCTCCACATCAGTGTCGAACCTCATCACGGCCTaGAAGGTCTTCCCAGTGTCCAGCTTGATCTGCACC +
Preference number: 6 (lower is better)
Translates to: VSSTSVSNLITA*KVFPVSSLICT
Trigger: GGTGCAGATCAAGCTGGACACTGGGAAGACCTTCCAGGCCGTGATGAGGTTCGACACTGATGTGGAGCTCAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS CAA 72 bp CTCATCACGGCCTGGAAGGTCTTCCCAGTGTCCAGCTaGATCTGCACCGTCATGCGAGGCTTGAGGTCTTCA +
Preference number: 6 (lower is better)
Translates to: LITAWKVFPVSS*ICTVMRGLRSS
Trigger: TGAAGACCTCAAGCCTCGCATGACGGTGCAGATCAAGCTGGACACTGGGAAGACCTTCCAGGCCGTGATGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS TCA 72 bp ACCAAGAACTCCCAGGCCGTCAATCATGGTCGTGTGTaGATCTGTGCCCACGAGGCTGTCTGGGTAGTAGCA +
Preference number: 6 (lower is better)
Translates to: TKNSQAVNHGRV*ICAHEAVWVVA
Trigger: TGCTACTACCCAGACAGCCTCGTGGGCACAGATTCACACACGACCATGATTGACGGCCTGGGAGTTCTTGGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS TCA 72 bp CCGCTCAGCAGCGTCGAATACATCAAGGGTTTCTCCTaGGGGGAGATGGACAGTCTGAGGTGCCTGCTTGTT +
Preference number: 6 (lower is better)
Translates to: PLSSVEYIKGFS*GEMDSLRCLLV
Trigger: AACAAGCAGGCACCTCAGACTGTCCATCTCCCCTCAGGAGAAACCCTTGATGTATTCGACGCTGCTGAGCGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS GCA 72 bp TCTTTCCCAGCCAGAACAATCAGGGGAAGTCCAGCCTaGTGGTACCGCTCAGCAGCGTCGAATACATCAAGG +
Preference number: 6 (lower is better)
Translates to: SFPARTIRGSPA*WYRSAASNTSR
Trigger: CCTTGATGTATTCGACGCTGCTGAGCGGTACCAGCAGGCTGGACTTCCCCTGATTGTTCTGGCTGGGAAAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS GCA 72 bp AACCAAGTTGCTGCGGTGAATGCGCTCATAGCTCTCTaGCAGGACAGCTTTGATTCCCAGCAGGAAAGGGCC +
Preference number: 6 (lower is better)
Translates to: NQVAAVNALIAL*QDSFDSQQERA
Trigger: GGCCCTTTCCTGCTGGGAATCAAAGCTGTCCTGGCAGAGAGCTATGAGCGCATTCACCGCAGCAACTTGGTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS GCA 72 bp TTTCACCAGGGAGATACTCAAGGGGGATCACCCCCATaGCAACCAAGTTGCTGCGGTGAATGCGCTCATAGC +
Preference number: 6 (lower is better)
Translates to: FHQGDTQGGSPP*QPSCCGECAHS
Trigger: GCTATGAGCGCATTCACCGCAGCAACTTGGTTGGCATGGGGGTGATCCCCCTTGAGTATCTCCCTGGTGAAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS CCA 72 bp CGTAGCTCGGTCAGCAATGGACAGCTGAGCCACTCCTaGCCCGAAAAACTCCACAAATTTGCCCACAACTCC +
Preference number: 6 (lower is better)
Translates to: RSSVSNGQLSHS*PEKLHKFAHNS
Trigger: GGAGTTGTGGGCAAATTTGTGGAGTTTTTCGGGCCAGGAGTGGCTCAGCTGTCCATTGCTGACCGAGCTACG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS CCA 72 bp TTCCCAGCCAGAACAATCAGGGGAAGTCCAGCCTGCTaGTACCGCTCAGCAGCGTCGAATACATCAAGGGTT +
Preference number: 6 (lower is better)
Translates to: FPARTIRGSPAC*YRSAASNTSRV
Trigger: AACCCTTGATGTATTCGACGCTGCTGAGCGGTACCAGCAGGCTGGACTTCCCCTGATTGTTCTGGCTGGGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS CAA 72 bp CTCTGTTCGTCAAGTAGCGAGCCGCAGGGCTGTTTCTaGCAATATTGCCGGCGGGAGAGATATGGTCCGTTG +
Preference number: 6 (lower is better)
Translates to: LCSSSSEPQGCF*QYCRRERYGPL
Trigger: CAACGGACCATATCTCTCCCGCCGGCAATATTGCAAGAAACAGCCCTGCGGCTCGCTACTTGACGAACAGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS GCA 72 bp CGGATTCCCTCCCAACTTCTTCACAGCATCGCGCATTaGTGCAAAATCCACCACAGCAGGCACACCCGTAAA +
Preference number: 6 (lower is better)
Translates to: RIPSQLLHSIAH*CKIHHSRHTRK
Trigger: TTTACGGGTGTGCCTGCTGTGGTGGATTTTGCAGCAATGCGCGATGCTGTGAAGAAGTTGGGAGGGAATCCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS GCA 72 bp TCTGTTCGTCAAGTAGCGAGCCGCAGGGCTGTTTCTTaGAATATTGCCGGCGGGAGAGATATGGTCCGTTGT +
Preference number: 6 (lower is better)
Translates to: SVRQVASRRAVS*NIAGGRDMVRC
Trigger: ACAACGGACCATATCTCTCCCGCCGGCAATATTGCAAGAAACAGCCCTGCGGCTCGCTACTTGACGAACAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS GCA 72 bp ATTCCCTCCCAACTTCTTCACAGCATCGCGCATTGCTaGAAAATCCACCACAGCAGGCACACCCGTAAAGTC +
Preference number: 6 (lower is better)
Translates to: IPSQLLHSIAHC*KIHHSRHTRKV
Trigger: GACTTTACGGGTGTGCCTGCTGTGGTGGATTTTGCAGCAATGCGCGATGCTGTGAAGAAGTTGGGAGGGAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS CCA 72 bp ATCAACCGGGAAGAAGGCTGCTGTCGCACCATACTCTaGGCACATATTGGCAATCGTAGCTCGGTCAGCAAT +
Preference number: 6 (lower is better)
Translates to: INREEGCCRTIL*AHIGNRSSVSN
Trigger: ATTGCTGACCGAGCTACGATTGCCAATATGTGCCCAGAGTATGGTGCGACAGCAGCCTTCTTCCCGGTTGAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS CAA 90 bp GTGTTAGGCCTCTGTTCGTCAAGTAGCGAGCCGCAGGGCTGTTTCTaGCAATATTGCCGGCGGGAGAGATATGGTCCGTTGTTACTGAAT +
Preference number: 6 (lower is better)
Translates to: VLGLCSSSSEPQGCF*QYCRRERYGPLLLN
Trigger: ATTCAGTAACAACGGACCATATCTCTCCCGCCGGCAATATTGCAAGAAACAGCCCTGCGGCTCGCTACTTGACGAACAGAGGCCTAACAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS CAA 90 bp AAGGTCTTCCCAGTGTCCAGCTTGATCTGCACCGTCATGCGAGGCTaGAGGTCTTCAGGGATGTTGATAGTGTATCTTTCCCGACCTGTG +
Preference number: 6 (lower is better)
Translates to: KVFPVSSLICTVMRG*RSSGMLIVYLSRPV
Trigger: CACAGGTCGGGAAAGATACACTATCAACATCCCTGAAGACCTCAAGCCTCGCATGACGGTGCAGATCAAGCTGGACACTGGGAAGACCTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS CAA 90 bp GCGCATTGCTGCAAAATCCACCACAGCAGGCACACCCGTAAAGTCTaGCAGTATGACTCGGGCTGGCTTAAACGGCACTTCTATGTTCTT +
Preference number: 6 (lower is better)
Translates to: AHCCKIHHSRHTRKV*QYDSGWLKRHFYVL
Trigger: AAGAACATAGAAGTGCCGTTTAAGCCAGCCCGAGTCATACTGCAAGACTTTACGGGTGTGCCTGCTGTGGTGGATTTTGCAGCAATGCGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS TCA 72 bp ACATGCCTACAGCCTGAAGATACTTCTGAATGTGCTTaGCTTTGTCTTCCTCGCGGCCTGTCTGCAGCAGGT +
Preference number: 6 (lower is better)
Translates to: TCLQPEDTSECA*LCLPRGLSAAG
Trigger: ACCTGCTGCAGACAGGCCGCGAGGAAGACAAAGTCAAGCACATTCAGAAGTATCTTCAGGCTGTAGGCATGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS TCA 72 bp TCATGTAGTTCAGGATGCCTCCATTGTGGAAGTACGTaGGCTCCACATCAGTGTCGAACCTCATCACGGCCT +
Preference number: 6 (lower is better)
Translates to: SCSSGCLHCGST*APHQCRTSSRP
Trigger: AGGCCGTGATGAGGTTCGACACTGATGTGGAGCTCACGTACTTCCACAATGGAGGCATCCTGAACTACATGA
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS GCA 72 bp GTACGCGATGCTAACTTCATCAACCGGGAAGAAGGCTaGTGTCGCACCATACTCTGGGCACATATTGGCAAT +
Preference number: 6 (lower is better)
Translates to: VRDANFINREEG*CRTILWAHIGN
Trigger: ATTGCCAATATGTGCCCAGAGTATGGTGCGACAGCAGCCTTCTTCCCGGTTGATGAAGTTAGCATCGCGTAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS GCA 72 bp TCAAGTAGCGAGCCGCAGGGCTGTTTCTTGCAATATTaGCGGCGGGAGAGATATGGTCCGTTGTTACTGAAT +
Preference number: 6 (lower is better)
Translates to: SSSEPQGCFLQY*RRERYGPLLLN
Trigger: ATTCAGTAACAACGGACCATATCTCTCCCGCCGGCAATATTGCAAGAAACAGCCCTGCGGCTCGCTACTTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS CAA 72 bp CCCGAAAAACTCCACAAATTTGCCCACAACTCCCACTaGTCGGAGGTGCTTGGTAATGGTGAGCACGATGTC +
Preference number: 6 (lower is better)
Translates to: PEKLHKFAHNSH*SEVLGNGEHDV
Trigger: GACATCGTGCTCACCATTACCAAGCACCTCCGACAAGTGGGAGTTGTGGGCAAATTTGTGGAGTTTTTCGGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS CAA 72 bp AAGGCTTCACACTCAGCCCCGCCTCCACAGCTTTCTTaGCTAACAATCCTGCTCCTAACATCACGGATGGAT +
Preference number: 6 (lower is better)
Translates to: KASHSAPPPQLS*LTILLLTSRMD
Trigger: ATCCATCCGTGATGTTAGGAGCAGGATTGTTAGCAAAGAAAGCTGTGGAGGCGGGGCTGAGTGTGAAGCCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS CAA 72 bp CCAGTGTCCAGCTTGATCTGCACCGTCATGCGAGGCTaGAGGTCTTCAGGGATGTTGATAGTGTATCTTTCC +
Preference number: 6 (lower is better)
Translates to: PVSSLICTVMRG*RSSGMLIVYLS
Trigger: GGAAAGATACACTATCAACATCCCTGAAGACCTCAAGCCTCGCATGACGGTGCAGATCAAGCTGGACACTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS TCA 72 bp ATATTGGCAATCGTAGCTCGGTCAGCAATGGACAGCTaGGCCACTCCTGGCCCGAAAAACTCCACAAATTTG +
Preference number: 6 (lower is better)
Translates to: ILAIVARSAMDS*ATPGPKNSTNL
Trigger: CAAATTTGTGGAGTTTTTCGGGCCAGGAGTGGCTCAGCTGTCCATTGCTGACCGAGCTACGATTGCCAATAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS TCA 72 bp AAGTCCTTTTTCATCTCAGACACCGCGACTTTGTCCTaGGGTCTTTTGGGTCCACTGCAGCAAGGCACAACT +
Preference number: 6 (lower is better)
Translates to: KSFFISDTATLS*GLLGPLQQGTT
Trigger: AGTTGTGCCTTGCTGCAGTGGACCCAAAAGACCTCAGGACAAAGTCGCGGTGTCTGAGATGAAAAAGGACTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS TCA 72 bp CGTTCACTCCCAAAGGCTCTTTCTCGAAGTCAATCCTaGCGGTGCCTGCAATCGCATATGCTATTACCAGAG +
Preference number: 6 (lower is better)
Translates to: RSLPKALSRSQS*RCLQSHMLLPE
Trigger: CTCTGGTAATAGCATATGCGATTGCAGGCACCGTCAGGATTGACTTCGAGAAAGAGCCTTTGGGAGTGAACG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS CAA 72 bp GAACGTCTTGCGGTCATTGTGACGGTCTGGAGCAACTaGGAAACCTTTAAATCCTTGCTTGGCTCCAAGGCA +
Preference number: 6 (lower is better)
Translates to: ERLAVIVTVWSN*ETFKSLLGSKA
Trigger: TGCCTTGGAGCCAAGCAAGGATTTAAAGGTTTCCAAGTTGCTCCAGACCGTCACAATGACCGCAAGACGTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS TCA 72 bp AACACTACTCTTGCCAAATACTCCAGGTTCACTTGGTaGATGATTCCCGAGCCAGGAGGGATTATCCGCATG +
Preference number: 6 (lower is better)
Translates to: NTTLAKYSRFTW*MIPEPGGIIRM
Trigger: CATGCGGATAATCCCTCCTGGCTCGGGAATCATTCACCAAGTGAACCTGGAGTATTTGGCAAGAGTAGTGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS CAA 72 bp CTCCAATTTATTCAAGTTGAAGAACCTCTTTCCTGGTaGGGCAGCGTCCAAGGGCTCAGCAAGGTGTGCAAA +
Preference number: 6 (lower is better)
Translates to: LQFIQVEEPLSW*GSVQGLSKVCK
Trigger: TTTGCACACCTTGCTGAGCCCTTGGACGCTGCCCAACCAGGAAAGAGGTTCTTCAACTTGAATAAATTGGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS CAA 90 bp GAAAATGGTAAGCGTCCGTATCTTGAGTCCTCCAATTTATTCAAGTaGAAGAACCTCTTTCCTGGTTGGGCAGCGTCCAAGGGCTCAGCA +
Preference number: 6 (lower is better)
Translates to: ENGKRPYLESSNLFK*KNLFPGWAASKGSA
Trigger: TGCTGAGCCCTTGGACGCTGCCCAACCAGGAAAGAGGTTCTTCAACTTGAATAAATTGGAGGACTCAAGATACGGACGCTTACCATTTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS CAA 90 bp ACTATAGAGGAACGTCTTGCGGTCATTGTGACGGTCTGGAGCAACTaGGAAACCTTTAAATCCTTGCTTGGCTCCAAGGCAGCTTTCAAA +
Preference number: 6 (lower is better)
Translates to: TIEERLAVIVTVWSN*ETFKSLLGSKAAFK
Trigger: TTTGAAAGCTGCCTTGGAGCCAAGCAAGGATTTAAAGGTTTCCAAGTTGCTCCAGACCGTCACAATGACCGCAAGACGTTCCTCTATAGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS CAA 90 bp CAGGGCTGTTTCTTGCAATATTGCCGGCGGGAGAGATATGGTCCGTaGTTACTGAATCTCCTAAATTCAGTAGCACATAGGCATCCACTA +
Preference number: 6 (lower is better)
Translates to: QGCFLQYCRRERYGP*LLNLLNSVAHRHPL
Trigger: TAGTGGATGCCTATGTGCTACTGAATTTAGGAGATTCAGTAACAACGGACCATATCTCTCCCGCCGGCAATATTGCAAGAAACAGCCCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS CCA 72 bp AGGCACACCCGTAAAGTCTTGCAGTATGACTCGGGCTaGCTTAAACGGCACTTCTATGTTCTTATGTTGCAT +
Preference number: 6 (lower is better)
Translates to: RHTRKVLQYDSG*LKRHFYVLMLH
Trigger: ATGCAACATAAGAACATAGAAGTGCCGTTTAAGCCAGCCCGAGTCATACTGCAAGACTTTACGGGTGTGCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS CCA 72 bp ACTATAGAGGAACGTCTTGCGGTCATTGTGACGGTCTaGAGCAACTTGGAAACCTTTAAATCCTTGCTTGGC +
Preference number: 6 (lower is better)
Translates to: TIEERLAVIVTV*SNLETFKSLLG
Trigger: GCCAAGCAAGGATTTAAAGGTTTCCAAGTTGCTCCAGACCGTCACAATGACCGCAAGACGTTCCTCTATAGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS CAA 72 bp AAGCGTCCGTATCTTGAGTCCTCCAATTTATTCAAGTaGAAGAACCTCTTTCCTGGTTGGGCAGCGTCCAAG +
Preference number: 6 (lower is better)
Translates to: KRPYLESSNLFK*KNLFPGWAASK
Trigger: CTTGGACGCTGCCCAACCAGGAAAGAGGTTCTTCAACTTGAATAAATTGGAGGACTCAAGATACGGACGCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS CAA 72 bp TTTGCTAACAATCCTGCTCCTAACATCACGGATGGATaGCTGGTGTTTGTGCAGCTAGTGATGGCAGCGATT +
Preference number: 6 (lower is better)
Translates to: FANNPAPNITDG*LVFVQLVMAAI
Trigger: AATCGCTGCCATCACTAGCTGCACAAACACCAGCAATCCATCCGTGATGTTAGGAGCAGGATTGTTAGCAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS CCA 72 bp GAGCCAGGAGGGATTATCCGCATGTTGCAAAAGGCCTaGGAACCCCACTTTAGAAATTCAAATCGTTCTTTA +
Preference number: 6 (lower is better)
Translates to: EPGGIIRMLQKA*EPHFRNSNRSL
Trigger: TAAAGAACGATTTGAATTTCTAAAGTGGGGTTCCCAGGCCTTTTGCAACATGCGGATAATCCCTCCTGGCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS CAA 72 bp TTCTTGCAATATTGCCGGCGGGAGAGATATGGTCCGTaGTTACTGAATCTCCTAAATTCAGTAGCACATAGG +
Preference number: 6 (lower is better)
Translates to: FLQYCRRERYGP*LLNLLNSVAHR
Trigger: CCTATGTGCTACTGAATTTAGGAGATTCAGTAACAACGGACCATATCTCTCCCGCCGGCAATATTGCAAGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS CCA 72 bp AATCTCCTAAATTCAGTAGCACATAGGCATCCACTATaGACTTGGGTGGCTGGAGATCTAAAGTCAAGCTTT +
Preference number: 6 (lower is better)
Translates to: NLLNSVAHRHPL*TWVAGDLKSSF
Trigger: AAAGCTTGACTTTAGATCTCCAGCCACCCAAGTCCATAGTGGATGCCTATGTGCTACTGAATTTAGGAGATT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4
CDS TCA 72 bp TCAAATCGTTCTTTATTTCTTTCAAACTCCAGGTCTTaGTTCTTCTGTAAACTGTCTGCCCTTCTGTTGAAA +
Preference number: 6 (lower is better)
Translates to: SNRSLFLSNSRS*FFCKLSALLLK
Trigger: TTTCAACAGAAGGGCAGACAGTTTACAGAAGAATCAAGACCTGGAGTTTGAAAGAAATAAAGAACGATTTGA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102973.4