RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ACKR4 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000079355

Ensembl transcript IDs: ENSMUST00000076147.6, ENSMUST00000188000.2, ENSMUST00000219146.2

Found 62 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CCATCACACACACACACACACACAGACTTCCTCTTTGTGGCACAATaGGTTGTTTCTCCCTCCTGCCAAGCTGTTTTCCTGTCATTAGAT +
Preference number: 1 (lower is better)
Translates to: PSHTHTHTDFLFVAQ*VVSPSCQAVFLSLD
Trigger: ATCTAATGACAGGAAAACAGCTTGGCAGGAGGGAGAAACAACGCATTGTGCCACAAAGAGGAAGTCTGTGTGTGTGTGTGTGTGTGATGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000076147.6
ENSMUST00000188000.2
ENSMUST00000219146.2
3UTR GCA 90 bp CACTTTGCCCACTTGTTTACTCTCTGGCGTCTGTCTTCCTTACCCTaGCCCACCCCTTACTCCTTCTTTGTTATAAATTGCAACAACAGT +
Preference number: 1 (lower is better)
Translates to: HFAHLFTLWRLSSLP*PTPYSFFVINCNNS
Trigger: ACTGTTGTTGCAATTTATAACAAAGAAGGAGTAAGGGGTGGGGCAGGGTAAGGAAGACAGACGCCAGAGAGTAAACAAGTGGGCAAAGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000076147.6
ENSMUST00000188000.2
ENSMUST00000219146.2
3UTR TCA 90 bp ACCCCTTACTCCTTCTTTGTTATAAATTGCAACAACAGTATTTGTTaGTGGTTGGGTCTCGGTGTAACACAAATATTTTATTTGAGGAGG +
Preference number: 1 (lower is better)
Translates to: TPYSFFVINCNNSIC*WLGLGVTQIFYLRR
Trigger: CCTCCTCAAATAAAATATTTGTGTTACACCGAGACCCAACCATCAACAAATACTGTTGTTGCAATTTATAACAAAGAAGGAGTAAGGGGT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000076147.6
ENSMUST00000188000.2
ENSMUST00000219146.2
3UTR-3UTR CCA 90 bp GGTCGTGGGCACGCATTACCCAGGGTTTTATATTACAGAATTACAGTTGCTGTCCACTTGTTTACTCTCTaGCGTCTGTCTTCCTTACCC +
Preference number: 2 (lower is better)
Translates to: GRGHALPRVLYYRITVAVHLFTL*RLSSLP
Trigger: GGGTAAGGAAGACAGACGCCAGAGAGTAAACAAGTG...GACAGCAACTGTAATTCTGTAATATAAAACCCTGGGTAATGCGTGCCCACGACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000076147.6
ENSMUST00000219146.2
3UTR-3UTR GCA 90 bp TCCTCTTTGTGGCACAATGCGTTGTTTCTCCCTCCTGCCAAGCTGTTTTCCTGTTTAGTTTCCACACTTTaGCCACTTGTTTACTCTCTG +
Preference number: 2 (lower is better)
Translates to: SSLWHNALFLPPAKLFSCLVSTL*PLVYSL
Trigger: CAGAGAGTAAACAAGTGGGCAAAGTGTGGAAACTAA...ACAGGAAAACAGCTTGGCAGGAGGGAGAAACAACGCATTGTGCCACAAAGAGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000076147.6
ENSMUST00000188000.2
ENSMUST00000219146.2
3UTR-3UTR GCA 90 bp CACGCATTACCCAGGGTTTTATATTACAGAATTACAGTTGCTGTCAGATTTGAACTGTCTTCCTTACCCTaGCCCACCCCTTACTCCTTC +
Preference number: 2 (lower is better)
Translates to: HALPRVLYYRITVAVRFELSSLP*PTPYSF
Trigger: GAAGGAGTAAGGGGTGGGGCAGGGTAAGGAAGACAG...TTCAAATCTGACAGCAACTGTAATTCTGTAATATAAAACCCTGGGTAATGCGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000076147.6
ENSMUST00000188000.2
ENSMUST00000219146.2
3UTR-3UTR GCA 90 bp TGTTTTCCTGTCATTAGATTTAGTTTCCACACTTTGCCCACTTGTTTACTCTCTCTGTCTTCCTTACCCTaGCCCACCCCTTACTCCTTC +
Preference number: 2 (lower is better)
Translates to: CFPVIRFSFHTLPTCLLSLSSLP*PTPYSF
Trigger: GAAGGAGTAAGGGGTGGGGCAGGGTAAGGAAGACAG...AGAGAGTAAACAAGTGGGCAAAGTGTGGAAACTAAATCTAATGACAGGAAAACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000076147.6
ENSMUST00000188000.2
ENSMUST00000219146.2
3UTR-3UTR CCA 90 bp CACGCATTACCCAGGGTTTTATATTACAGAATTACAGTTGCTGTCAGATTTGAACACTTGTTTACTCTCTaGCGTCTGTCTTCCTTACCC +
Preference number: 2 (lower is better)
Translates to: HALPRVLYYRITVAVRFEHLFTL*RLSSLP
Trigger: GGGTAAGGAAGACAGACGCCAGAGAGTAAACAAGTG...TTCAAATCTGACAGCAACTGTAATTCTGTAATATAAAACCCTGGGTAATGCGTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000076147.6
ENSMUST00000188000.2
ENSMUST00000219146.2
3UTR-3UTR GCA 90 bp GGGCACGCATTACCCAGGGTTTTATATTACAGAATTACAGTTGCTGTCAGATTTTTAGTTTCCACACTTTaGCCACTTGTTTACTCTCTG +
Preference number: 2 (lower is better)
Translates to: GHALPRVLYYRITVAVRFLVSTL*PLVYSL
Trigger: CAGAGAGTAAACAAGTGGGCAAAGTGTGGAAACTAA...AAATCTGACAGCAACTGTAATTCTGTAATATAAAACCCTGGGTAATGCGTGCCC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000076147.6
ENSMUST00000188000.2
ENSMUST00000219146.2
3UTR CCA 72 bp CTCACAGGAAGTTACAGAGATAGTACAGGATGGTCGTaGGCACGCATTACCCAGGGTTTTATATTACAGAAT +
Preference number: 3 (lower is better)
Translates to: LTGSYRDSTGWS*ARITQGFILQN
Trigger: ATTCTGTAATATAAAACCCTGGGTAATGCGTGCCCACGACCATCCTGTACTATCTCTGTAACTTCCTGTGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000076147.6
ENSMUST00000219146.2
3UTR GCA 72 bp GCTGTTTTCCTGTCATTAGATTTAGTTTCCACACTTTaGCCACTTGTTTACTCTCTGGCGTCTGTCTTCCTT +
Preference number: 3 (lower is better)
Translates to: AVFLSLDLVSTL*PLVYSLASVFL
Trigger: AAGGAAGACAGACGCCAGAGAGTAAACAAGTGGGCAAAGTGTGGAAACTAAATCTAATGACAGGAAAACAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000076147.6
ENSMUST00000188000.2
ENSMUST00000219146.2
3UTR TCA 72 bp GGTTTTATATTACAGAATTACAGTTGCTGTCAGATTTaGATAACCACCACTGTGGTGAAGATGCAAAACACC +
Preference number: 3 (lower is better)
Translates to: GFILQNYSCCQI*ITTTVVKMQNT
Trigger: GGTGTTTTGCATCTTCACCACAGTGGTGGTTATTCAAATCTGACAGCAACTGTAATTCTGTAATATAAAACC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000076147.6
ENSMUST00000188000.2
ENSMUST00000219146.2
CDS-3UTR TCA 90 bp CCACACTTTGCCCACTTGTTTACTCTCTGGCGTCTGTCTTCCTTACCCTGCCCCGGGTCTCCCCGCTCCTaGTTGGCTGGGGGCTTTGGT +
Preference number: 4 (lower is better)
Translates to: PHFAHLFTLWRLSSLPCPGSPRS*LAGGFG
Trigger: ACCAAAGCCCCCAGCCAATCAGGAGCGGGGAGACCC...GGGGCAGGGTAAGGAAGACAGACGCCAGAGAGTAAACAAGTGGGCAAAGTGTGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000076147.6
ENSMUST00000188000.2
ENSMUST00000219146.2
CDS-3UTR TCA 90 bp CCACACTTTGCCCACTTGTTTACTCTCTGGCGTCTGTCTTCCTTACCCTGCCCCACACACAGCAACAGATaGTCCAACAGGGTCTCCCCG +
Preference number: 4 (lower is better)
Translates to: PHFAHLFTLWRLSSLPCPTHSNR*SNRVSP
Trigger: CGGGGAGACCCTGTTGGATCATCTGTTGCTGTGTGT...GGGGCAGGGTAAGGAAGACAGACGCCAGAGAGTAAACAAGTGGGCAAAGTGTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000076147.6
ENSMUST00000188000.2
ENSMUST00000219146.2
CDS-3UTR GCA 90 bp CCACACTTTGCCCACTTGTTTACTCTCTGGCGTCTGTCTTCCTTACCCTGCCCCAACTACGGAGTTCCCTaGGAGCCCAGTGACAAAGGC +
Preference number: 4 (lower is better)
Translates to: PHFAHLFTLWRLSSLPCPNYGVP*EPSDKG
Trigger: GCCTTTGTCACTGGGCTCGCAGGGAACTCCGTAGTT...GGGGCAGGGTAAGGAAGACAGACGCCAGAGAGTAAACAAGTGGGCAAAGTGTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000076147.6
ENSMUST00000188000.2
ENSMUST00000219146.2
CDS-3UTR GCA 90 bp GTGGCACAATGCGTTGTTTCTCCCTCCTGCCAAGCTGTTTTCCTGTCATTAGATAACTACGGAGTTCCCTaGGAGCCCAGTGACAAAGGC +
Preference number: 4 (lower is better)
Translates to: VAQCVVSPSCQAVFLSLDNYGVP*EPSDKG
Trigger: GCCTTTGTCACTGGGCTCGCAGGGAACTCCGTAGTT...ATCTAATGACAGGAAAACAGCTTGGCAGGAGGGAGAAACAACGCATTGTGCCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000076147.6
ENSMUST00000188000.2
ENSMUST00000219146.2
CDS-3UTR TCA 90 bp TGTGGCACAATGCGTTGTTTCTCCCTCCTGCCAAGCTGTTTTCCTGTCATTAGACCTAGAATCCATCCGTaGACTGCATTAACTGCCCAG +
Preference number: 4 (lower is better)
Translates to: CGTMRCFSLLPSCFPVIRPRIHP*TALTAQ
Trigger: CTGGGCAGTTAATGCAGTTCACGGATGGATTCTAGG...TCTAATGACAGGAAAACAGCTTGGCAGGAGGGAGAAACAACGCATTGTGCCACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000076147.6
ENSMUST00000188000.2
ENSMUST00000219146.2
CDS-3UTR TCA 90 bp TGTTTTCCTGTCATTAGATTTAGTTTCCACACTTTGCCCACTTGTTTACTCTCTGGGTCTCCCCGCTCCTaGTTGGCTGGGGGCTTTGGT +
Preference number: 4 (lower is better)
Translates to: CFPVIRFSFHTLPTCLLSGSPRS*LAGGFG
Trigger: ACCAAAGCCCCCAGCCAATCAGGAGCGGGGAGACCC...AGAGAGTAAACAAGTGGGCAAAGTGTGGAAACTAAATCTAATGACAGGAAAACA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000076147.6
ENSMUST00000188000.2
ENSMUST00000219146.2
CDS-3UTR GCA 90 bp GTGGCACAATGCGTTGTTTCTCCCTCCTGCCAAGCTGTTTTCCTGTCATTAGATGGACCACAAAGCCGATaGCGATTTCCAGCATCTGAA +
Preference number: 4 (lower is better)
Translates to: VAQCVVSPSCQAVFLSLDGPQSR*RFPASE
Trigger: TTCAGATGCTGGAAATCGGCATCGGCTTTGTGGTCC...ATCTAATGACAGGAAAACAGCTTGGCAGGAGGGAGAAACAACGCATTGTGCCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000076147.6
ENSMUST00000188000.2
ENSMUST00000219146.2
CDS-3UTR GCA 90 bp TGTGGCACAATGCGTTGTTTCTCCCTCCTGCCAAGCTGTTTTCCTGTCATTAGAGGACCACAAAGCCGATaGCGATTTCCAGCATCTGAA +
Preference number: 4 (lower is better)
Translates to: CGTMRCFSLLPSCFPVIRGPQSR*RFPASE
Trigger: TTCAGATGCTGGAAATCGGCATCGGCTTTGTGGTCC...TCTAATGACAGGAAAACAGCTTGGCAGGAGGGAGAAACAACGCATTGTGCCACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000076147.6
ENSMUST00000188000.2
ENSMUST00000219146.2
CDS-3UTR CCA 90 bp CAGGATGGTCGTGGGCACGCATTACCCAGGGTTTTATATTACAGAATTACAGTTCTCCCCGCTCCTGATTaGCTGGGGGCTTTGGTAATT +
Preference number: 4 (lower is better)
Translates to: QDGRGHALPRVLYYRITVLPAPD*LGALVI
Trigger: AATTACCAAAGCCCCCAGCCAATCAGGAGCGGGGAG...AACTGTAATTCTGTAATATAAAACCCTGGGTAATGCGTGCCCACGACCATCCTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000076147.6
ENSMUST00000219146.2
3UTR CAA 72 bp ACACACACACAGACTTCCTCTTTGTGGCACAATGCGTaGTTTCTCCCTCCTGCCAAGCTGTTTTCCTGTCAT +
Preference number: 4 (lower is better)
Translates to: THTQTSSLWHNA*FLPPAKLFSCH
Trigger: ATGACAGGAAAACAGCTTGGCAGGAGGGAGAAACAACGCATTGTGCCACAAAGAGGAAGTCTGTGTGTGTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000076147.6
ENSMUST00000188000.2
ENSMUST00000219146.2
CDS-3UTR TCA 90 bp TTACTCACAGGAAGTTACAGAGATAGTACAGGATGGTCGTGGGCACGCATTACCATAATAGTATTCCGCTaGCTGGTTCAGCTCCAGAGC +
Preference number: 4 (lower is better)
Translates to: LLTGSYRDSTGWSWARITIIVFR*LVQLQS
Trigger: GCTCTGGAGCTGAACCAGTCAGCGGAATACTATTAT...GGTAATGCGTGCCCACGACCATCCTGTACTATCTCTGTAACTTCCTGTGAGTAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000076147.6
ENSMUST00000219146.2
CDS-3UTR TCA 90 bp TGTGGCACAATGCGTTGTTTCTCCCTCCTGCCAAGCTGTTTTCCTGTCATTAGAATAATAGTATTCCGCTaGCTGGTTCAGCTCCAGAGC +
Preference number: 4 (lower is better)
Translates to: CGTMRCFSLLPSCFPVIRIIVFR*LVQLQS
Trigger: GCTCTGGAGCTGAACCAGTCAGCGGAATACTATTAT...TCTAATGACAGGAAAACAGCTTGGCAGGAGGGAGAAACAACGCATTGTGCCACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000076147.6
ENSMUST00000188000.2
ENSMUST00000219146.2
CDS-3UTR TCA 90 bp TCCTCTTTGTGGCACAATGCGTTGTTTCTCCCTCCTGCCAAGCTGTTTTCCTGTCTTTTGCGAACTGCCTaGCCTCTTCTTTTATGCAGA +
Preference number: 4 (lower is better)
Translates to: SSLWHNALFLPPAKLFSCLLRTA*PLLLCR
Trigger: TCTGCATAAAAGAAGAGGTCAGGCAGTTCGCAAAAG...ACAGGAAAACAGCTTGGCAGGAGGGAGAAACAACGCATTGTGCCACAAAGAGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000076147.6
ENSMUST00000188000.2
ENSMUST00000219146.2
CDS-3UTR TCA 90 bp GGGTTTTATATTACAGAATTACAGTTGCTGTCAGATTTGAATAACCACCACTGTGGGTCTCCCCGCTCCTaGTTGGCTGGGGGCTTTGGT +
Preference number: 4 (lower is better)
Translates to: GFYITELQLLSDLNNHHCGSPRS*LAGGFG
Trigger: ACCAAAGCCCCCAGCCAATCAGGAGCGGGGAGACCC...ACAGTGGTGGTTATTCAAATCTGACAGCAACTGTAATTCTGTAATATAAAACCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000076147.6
ENSMUST00000188000.2
ENSMUST00000219146.2
CDS-3UTR TCA 90 bp TGTGTGTGTGTGTGTGTGTCTAAGCAAAAAGCAGAGGCAGAGAGCAGTTTTATAACACACAGCAACAGATaGTCCAACAGGGTCTCCCCG +
Preference number: 4 (lower is better)
Translates to: CVCVCVSKQKAEAESSFITHSNR*SNRVSP
Trigger: CGGGGAGACCCTGTTGGATCATCTGTTGCTGTGTGT...TATAAAACTGCTCTCTGCCTCTGCTTTTTGCTTAGACACACACACACACACACA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000076147.6
ENSMUST00000188000.2
ENSMUST00000219146.2
CDS-3UTR TCA 90 bp GTGGCACAATGCGTTGTTTCTCCCTCCTGCCAAGCTGTTTTCCTGTCATTAGATCTTTTGCGAACTGCCTaGCCTCTTCTTTTATGCAGA +
Preference number: 4 (lower is better)
Translates to: VAQCVVSPSCQAVFLSLDLLRTA*PLLLCR
Trigger: TCTGCATAAAAGAAGAGGTCAGGCAGTTCGCAAAAG...ATCTAATGACAGGAAAACAGCTTGGCAGGAGGGAGAAACAACGCATTGTGCCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000076147.6
ENSMUST00000188000.2
ENSMUST00000219146.2
CDS-3UTR GCA 90 bp TGTGGCACAATGCGTTGTTTCTCCCTCCTGCCAAGCTGTTTTCCTGTCATTAGAAATCCATCCGTGAACTaGATTAACTGCCCAGAAAGG +
Preference number: 4 (lower is better)
Translates to: CGTMRCFSLLPSCFPVIRNPSVN*INCPER
Trigger: CCTTTCTGGGCAGTTAATGCAGTTCACGGATGGATT...TCTAATGACAGGAAAACAGCTTGGCAGGAGGGAGAAACAACGCATTGTGCCACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000076147.6
ENSMUST00000188000.2
ENSMUST00000219146.2
CDS-3UTR GCA 90 bp TTACTCACAGGAAGTTACAGAGATAGTACAGGATGGTCGTGGGCACGCATTACCGGGGGCTTTGGTAATTaGCCAATATCTGTCAATGCT +
Preference number: 4 (lower is better)
Translates to: LLTGSYRDSTGWSWARITGGFGN*PISVNA
Trigger: AGCATTGACAGATATTGGGCAATTACCAAAGCCCCC...GGTAATGCGTGCCCACGACCATCCTGTACTATCTCTGTAACTTCCTGTGAGTAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000076147.6
ENSMUST00000219146.2
CDS-3UTR CCA 90 bp GGGCACGCATTACCCAGGGTTTTATATTACAGAATTACAGTTGCTGTCAGATTTCTCCCCGCTCCTGATTaGCTGGGGGCTTTGGTAATT +
Preference number: 4 (lower is better)
Translates to: GHALPRVLYYRITVAVRFLPAPD*LGALVI
Trigger: AATTACCAAAGCCCCCAGCCAATCAGGAGCGGGGAG...AAATCTGACAGCAACTGTAATTCTGTAATATAAAACCCTGGGTAATGCGTGCCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000076147.6
ENSMUST00000188000.2
ENSMUST00000219146.2
CDS-3UTR GCA 90 bp TGTGGCACAATGCGTTGTTTCTCCCTCCTGCCAAGCTGTTTTCCTGTCATTAGAGGGCTGACGTTACTTTaGACATCATTTTGCCTAGAA +
Preference number: 4 (lower is better)
Translates to: CGTMRCFSLLPSCFPVIRGLTLL*TSFCLE
Trigger: TTCTAGGCAAAATGATGTGCAAAGTAACGTCAGCCC...TCTAATGACAGGAAAACAGCTTGGCAGGAGGGAGAAACAACGCATTGTGCCACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000076147.6
ENSMUST00000188000.2
ENSMUST00000219146.2
CDS-3UTR GCA 90 bp GTGGCACAATGCGTTGTTTCTCCCTCCTGCCAAGCTGTTTTCCTGTCATTAGATGGGCTGACGTTACTTTaGACATCATTTTGCCTAGAA +
Preference number: 4 (lower is better)
Translates to: VAQCVVSPSCQAVFLSLDGLTLL*TSFCLE
Trigger: TTCTAGGCAAAATGATGTGCAAAGTAACGTCAGCCC...ATCTAATGACAGGAAAACAGCTTGGCAGGAGGGAGAAACAACGCATTGTGCCAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000076147.6
ENSMUST00000188000.2
ENSMUST00000219146.2
CDS-3UTR GCA 90 bp TTACTCACAGGAAGTTACAGAGATAGTACAGGATGGTCGTGGGCACGCATTACCGGGCTGACGTTACTTTaGACATCATTTTGCCTAGAA +
Preference number: 4 (lower is better)
Translates to: LLTGSYRDSTGWSWARITGLTLL*TSFCLE
Trigger: TTCTAGGCAAAATGATGTGCAAAGTAACGTCAGCCC...GGTAATGCGTGCCCACGACCATCCTGTACTATCTCTGTAACTTCCTGTGAGTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000076147.6
ENSMUST00000219146.2
CDS-3UTR CCA 90 bp TGTGGCACAATGCGTTGTTTCTCCCTCCTGCCAAGCTGTTTTCCTGTCATTAGATTTCCAGCATCTGAATaGATGCTTTCAGGGATGTTC +
Preference number: 4 (lower is better)
Translates to: CGTMRCFSLLPSCFPVIRFPASE*MLSGMF
Trigger: GAACATCCCTGAAAGCATCCATTCAGATGCTGGAAA...TCTAATGACAGGAAAACAGCTTGGCAGGAGGGAGAAACAACGCATTGTGCCACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000076147.6
ENSMUST00000188000.2
ENSMUST00000219146.2
CDS-3UTR TCA 90 bp GGGCACGCATTACCCAGGGTTTTATATTACAGAATTACAGTTGCTGTCAGATTTCCTAGAATCCATCCGTaGACTGCATTAACTGCCCAG +
Preference number: 4 (lower is better)
Translates to: GHALPRVLYYRITVAVRFPRIHP*TALTAQ
Trigger: CTGGGCAGTTAATGCAGTTCACGGATGGATTCTAGG...AAATCTGACAGCAACTGTAATTCTGTAATATAAAACCCTGGGTAATGCGTGCCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000076147.6
ENSMUST00000188000.2
ENSMUST00000219146.2
CDS-3UTR TCA 90 bp TTAGATTTAGTTTCCACACTTTGCCCACTTGTTTACTCTCTGGCGTCTGTCTTCCCGATTTCCAGCATCTaGATGGATGCTTTCAGGGAT +
Preference number: 4 (lower is better)
Translates to: LDLVSTLCPLVYSLASVFPISSI*MDAFRD
Trigger: ATCCCTGAAAGCATCCATTCAGATGCTGGAAATCGG...GAAGACAGACGCCAGAGAGTAAACAAGTGGGCAAAGTGTGGAAACTAAATCTAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000076147.6
ENSMUST00000188000.2
ENSMUST00000219146.2
CDS-3UTR CCA 90 bp CACGCATTACCCAGGGTTTTATATTACAGAATTACAGTTGCTGTCAGATTTGAACTCCCCGCTCCTGATTaGCTGGGGGCTTTGGTAATT +
Preference number: 4 (lower is better)
Translates to: HALPRVLYYRITVAVRFELPAPD*LGALVI
Trigger: AATTACCAAAGCCCCCAGCCAATCAGGAGCGGGGAG...TTCAAATCTGACAGCAACTGTAATTCTGTAATATAAAACCCTGGGTAATGCGTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000076147.6
ENSMUST00000188000.2
ENSMUST00000219146.2
CDS-3UTR GCA 90 bp TATATTACAGAATTACAGTTGCTGTCAGATTTGAATAACCACCACTGTGGTGAAAACTACGGAGTTCCCTaGGAGCCCAGTGACAAAGGC +
Preference number: 4 (lower is better)
Translates to: YITELQLLSDLNNHHCGENYGVP*EPSDKG
Trigger: GCCTTTGTCACTGGGCTCGCAGGGAACTCCGTAGTT...TTCACCACAGTGGTGGTTATTCAAATCTGACAGCAACTGTAATTCTGTAATATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000076147.6
ENSMUST00000188000.2
ENSMUST00000219146.2
CDS-3UTR TCA 90 bp CAACAGTATTTGTTGATGGTTGGGTCTCGGTGTAACACAAATATTTTATTTGAGCCTAGAATCCATCCGTaGACTGCATTAACTGCCCAG +
Preference number: 4 (lower is better)
Translates to: QQYLLMVGSRCNTNILFEPRIHP*TALTAQ
Trigger: CTGGGCAGTTAATGCAGTTCACGGATGGATTCTAGG...CTCAAATAAAATATTTGTGTTACACCGAGACCCAACCATCAACAAATACTGTTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000076147.6
ENSMUST00000188000.2
ENSMUST00000219146.2
CDS-3UTR TCA 90 bp CTTTGTTATAAATTGCAACAACAGTATTTGTTGATGGTTGGGTCTCGGTGTAACCCGATTTCCAGCATCTaGATGGATGCTTTCAGGGAT +
Preference number: 4 (lower is better)
Translates to: LCYKLQQQYLLMVGSRCNPISSI*MDAFRD
Trigger: ATCCCTGAAAGCATCCATTCAGATGCTGGAAATCGG...GTTACACCGAGACCCAACCATCAACAAATACTGTTGTTGCAATTTATAACAAAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000076147.6
ENSMUST00000188000.2
ENSMUST00000219146.2
CDS-3UTR GCA 90 bp TTAGATTTAGTTTCCACACTTTGCCCACTTGTTTACTCTCTGGCGTCTGTCTTCCTTTGCACATCATTTTaGCTAGAATCCATCCGTGAA +
Preference number: 4 (lower is better)
Translates to: LDLVSTLCPLVYSLASVFLCTSF*LESIRE
Trigger: TTCACGGATGGATTCTAGGCAAAATGATGTGCAAAG...GAAGACAGACGCCAGAGAGTAAACAAGTGGGCAAAGTGTGGAAACTAAATCTAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000076147.6
ENSMUST00000188000.2
ENSMUST00000219146.2
CDS-3UTR GCA 90 bp TATATTACAGAATTACAGTTGCTGTCAGATTTGAATAACCACCACTGTGGTGAAGGACCACAAAGCCGATaGCGATTTCCAGCATCTGAA +
Preference number: 4 (lower is better)
Translates to: YITELQLLSDLNNHHCGEGPQSR*RFPASE
Trigger: TTCAGATGCTGGAAATCGGCATCGGCTTTGTGGTCC...TTCACCACAGTGGTGGTTATTCAAATCTGACAGCAACTGTAATTCTGTAATATA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000076147.6
ENSMUST00000188000.2
ENSMUST00000219146.2
CDS-3UTR TCA 90 bp CAACAGTATTTGTTGATGGTTGGGTCTCGGTGTAACACAAATATTTTATTTGAGATAATAGTATTCCGCTaGCTGGTTCAGCTCCAGAGC +
Preference number: 4 (lower is better)
Translates to: QQYLLMVGSRCNTNILFEIIVFR*LVQLQS
Trigger: GCTCTGGAGCTGAACCAGTCAGCGGAATACTATTAT...CTCAAATAAAATATTTGTGTTACACCGAGACCCAACCATCAACAAATACTGTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000076147.6
ENSMUST00000188000.2
ENSMUST00000219146.2
CDS-3UTR TCA 90 bp CAACAGTATTTGTTGATGGTTGGGTCTCGGTGTAACACAAATATTTTATTTGAGCCGATTTCCAGCATCTaGATGGATGCTTTCAGGGAT +
Preference number: 4 (lower is better)
Translates to: QQYLLMVGSRCNTNILFEPISSI*MDAFRD
Trigger: ATCCCTGAAAGCATCCATTCAGATGCTGGAAATCGG...CTCAAATAAAATATTTGTGTTACACCGAGACCCAACCATCAACAAATACTGTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000076147.6
ENSMUST00000188000.2
ENSMUST00000219146.2
CDS-3UTR GCA 90 bp CACGCATTACCCAGGGTTTTATATTACAGAATTACAGTTGCTGTCAGATTTGAAAATCCATCCGTGAACTaGATTAACTGCCCAGAAAGG +
Preference number: 4 (lower is better)
Translates to: HALPRVLYYRITVAVRFENPSVN*INCPER
Trigger: CCTTTCTGGGCAGTTAATGCAGTTCACGGATGGATT...TTCAAATCTGACAGCAACTGTAATTCTGTAATATAAAACCCTGGGTAATGCGTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000076147.6
ENSMUST00000188000.2
ENSMUST00000219146.2
CDS-3UTR GCA 90 bp GGGCACGCATTACCCAGGGTTTTATATTACAGAATTACAGTTGCTGTCAGATTTCTTTGCACATCATTTTaGCTAGAATCCATCCGTGAA +
Preference number: 4 (lower is better)
Translates to: GHALPRVLYYRITVAVRFLCTSF*LESIRE
Trigger: TTCACGGATGGATTCTAGGCAAAATGATGTGCAAAG...AAATCTGACAGCAACTGTAATTCTGTAATATAAAACCCTGGGTAATGCGTGCCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000076147.6
ENSMUST00000188000.2
ENSMUST00000219146.2
CDS-3UTR GCA 90 bp TATATTACAGAATTACAGTTGCTGTCAGATTTGAATAACCACCACTGTGGTGAAGGGGGCTTTGGTAATTaGCCAATATCTGTCAATGCT +
Preference number: 4 (lower is better)
Translates to: YITELQLLSDLNNHHCGEGGFGN*PISVNA
Trigger: AGCATTGACAGATATTGGGCAATTACCAAAGCCCCC...TTCACCACAGTGGTGGTTATTCAAATCTGACAGCAACTGTAATTCTGTAATATA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000076147.6
ENSMUST00000188000.2
ENSMUST00000219146.2
CDS-3UTR CCA 90 bp TATATTACAGAATTACAGTTGCTGTCAGATTTGAATAACCACCACTGTGGTGAATTTCCAGCATCTGAATaGATGCTTTCAGGGATGTTC +
Preference number: 4 (lower is better)
Translates to: YITELQLLSDLNNHHCGEFPASE*MLSGMF
Trigger: GAACATCCCTGAAAGCATCCATTCAGATGCTGGAAA...TTCACCACAGTGGTGGTTATTCAAATCTGACAGCAACTGTAATTCTGTAATATA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000076147.6
ENSMUST00000188000.2
ENSMUST00000219146.2
3UTR CAA 72 bp GGGTTTTATATTACAGAATTACAGTTGCTGTCAGATTaGAATAACCACCACTGTGGTGAAGATGCAAAACAC +
Preference number: 4 (lower is better)
Translates to: GFYITELQLLSD*NNHHCGEDAKH
Trigger: GTGTTTTGCATCTTCACCACAGTGGTGGTTATTCAAATCTGACAGCAACTGTAATTCTGTAATATAAAACCC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000076147.6
ENSMUST00000188000.2
ENSMUST00000219146.2
CDS-3UTR GCA 90 bp GGGTTTTATATTACAGAATTACAGTTGCTGTCAGATTTGAATAACCACCACTGTCTTTGCACATCATTTTaGCTAGAATCCATCCGTGAA +
Preference number: 4 (lower is better)
Translates to: GFYITELQLLSDLNNHHCLCTSF*LESIRE
Trigger: TTCACGGATGGATTCTAGGCAAAATGATGTGCAAAG...ACAGTGGTGGTTATTCAAATCTGACAGCAACTGTAATTCTGTAATATAAAACCC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000076147.6
ENSMUST00000188000.2
ENSMUST00000219146.2
CDS-3UTR CAA 90 bp CCACACTTTGCCCACTTGTTTACTCTCTGGCGTCTGTCTTCCTTACCCTGCCCCGATGGCATCTATGGCTaGGCAGAACTTAACAACGTT +
Preference number: 5 (lower is better)
Translates to: PHFAHLFTLWRLSSLPCPDGIYG*AELNNV
Trigger: AACGTTGTTAAGTTCTGCCAAGCCATAGATGCCATC...GGGGCAGGGTAAGGAAGACAGACGCCAGAGAGTAAACAAGTGGGCAAAGTGTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000076147.6
ENSMUST00000188000.2
ENSMUST00000219146.2
CDS GCA 90 bp CCCAGTGACAAAGGCCACTGTGAAGAAGGCAGGCAGGAAGACTTTTaGGAACTGCCTGACCTCTTCTTTTATGCAGATCACTTCGTACTG +
Preference number: 5 (lower is better)
Translates to: PSDKGHCEEGRQEDF*ELPDLFFYADHFVL
Trigger: CAGTACGAAGTGATCTGCATAAAAGAAGAGGTCAGGCAGTTCGCAAAAGTCTTCCTGCCTGCCTTCTTCACAGTGGCCTTTGTCACTGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000076147.6
ENSMUST00000188000.2
ENSMUST00000219146.2
CDS-3UTR CAA 90 bp GGTCGTGGGCACGCATTACCCAGGGTTTTATATTACAGAATTACAGTTGCTGTCGATGGCATCTATGGCTaGGCAGAACTTAACAACGTT +
Preference number: 5 (lower is better)
Translates to: GRGHALPRVLYYRITVAVDGIYG*AELNNV
Trigger: AACGTTGTTAAGTTCTGCCAAGCCATAGATGCCATC...GACAGCAACTGTAATTCTGTAATATAAAACCCTGGGTAATGCGTGCCCACGACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000076147.6
ENSMUST00000219146.2
CDS-3UTR CAA 90 bp TTAGATTTAGTTTCCACACTTTGCCCACTTGTTTACTCTCTGGCGTCTGTCTTCAGGGCTGACGTTACTTaGCACATCATTTTGCCTAGA +
Preference number: 5 (lower is better)
Translates to: LDLVSTLCPLVYSLASVFRADVT*HIILPR
Trigger: TCTAGGCAAAATGATGTGCAAAGTAACGTCAGCCCT...GAAGACAGACGCCAGAGAGTAAACAAGTGGGCAAAGTGTGGAAACTAAATCTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000076147.6
ENSMUST00000188000.2
ENSMUST00000219146.2
CDS-3UTR CAA 90 bp GGGCACGCATTACCCAGGGTTTTATATTACAGAATTACAGTTGCTGTCAGATTTAGGGCTGACGTTACTTaGCACATCATTTTGCCTAGA +
Preference number: 5 (lower is better)
Translates to: GHALPRVLYYRITVAVRFRADVT*HIILPR
Trigger: TCTAGGCAAAATGATGTGCAAAGTAACGTCAGCCCT...AAATCTGACAGCAACTGTAATTCTGTAATATAAAACCCTGGGTAATGCGTGCCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000076147.6
ENSMUST00000188000.2
ENSMUST00000219146.2
CDS-3UTR CAA 90 bp CACGCATTACCCAGGGTTTTATATTACAGAATTACAGTTGCTGTCAGATTTGAAGATTGGCTGGGGGCTTaGGTAATTGCCCAATATCTG +
Preference number: 5 (lower is better)
Translates to: HALPRVLYYRITVAVRFEDWLGA*VIAQYL
Trigger: CAGATATTGGGCAATTACCAAAGCCCCCAGCCAATC...TTCAAATCTGACAGCAACTGTAATTCTGTAATATAAAACCCTGGGTAATGCGTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000076147.6
ENSMUST00000188000.2
ENSMUST00000219146.2
CDS-3UTR CAA 90 bp CAACAGTATTTGTTGATGGTTGGGTCTCGGTGTAACACAAATATTTTATTTGAGGATTGGCTGGGGGCTTaGGTAATTGCCCAATATCTG +
Preference number: 5 (lower is better)
Translates to: QQYLLMVGSRCNTNILFEDWLGA*VIAQYL
Trigger: CAGATATTGGGCAATTACCAAAGCCCCCAGCCAATC...CTCAAATAAAATATTTGTGTTACACCGAGACCCAACCATCAACAAATACTGTTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000076147.6
ENSMUST00000188000.2
ENSMUST00000219146.2
CDS-3UTR CAA 90 bp CACGCATTACCCAGGGTTTTATATTACAGAATTACAGTTGCTGTCAGATTTGAAAGGGCTGACGTTACTTaGCACATCATTTTGCCTAGA +
Preference number: 5 (lower is better)
Translates to: HALPRVLYYRITVAVRFERADVT*HIILPR
Trigger: TCTAGGCAAAATGATGTGCAAAGTAACGTCAGCCCT...TTCAAATCTGACAGCAACTGTAATTCTGTAATATAAAACCCTGGGTAATGCGTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000076147.6
ENSMUST00000188000.2
ENSMUST00000219146.2
CDS-3UTR CAA 90 bp CAACAGTATTTGTTGATGGTTGGGTCTCGGTGTAACACAAATATTTTATTTGAGGATGGCATCTATGGCTaGGCAGAACTTAACAACGTT +
Preference number: 5 (lower is better)
Translates to: QQYLLMVGSRCNTNILFEDGIYG*AELNNV
Trigger: AACGTTGTTAAGTTCTGCCAAGCCATAGATGCCATC...CTCAAATAAAATATTTGTGTTACACCGAGACCCAACCATCAACAAATACTGTTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000076147.6
ENSMUST00000188000.2
ENSMUST00000219146.2
CDS GCA 72 bp GTAATAGGCGTAAATCGCCACAACTACGGAGTTCCCTaGGAGCCCAGTGACAAAGGCCACTGTGAAGAAGGC +
Preference number: 6 (lower is better)
Translates to: VIGVNRHNYGVP*EPSDKGHCEEG
Trigger: GCCTTCTTCACAGTGGCCTTTGTCACTGGGCTCGCAGGGAACTCCGTAGTTGTGGCGATTTACGCCTATTAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000076147.6
ENSMUST00000188000.2
ENSMUST00000219146.2
CDS GCA 72 bp ACTGTGAAGAAGGCAGGCAGGAAGACTTTTGCGAACTaGCTGACCTCTTCTTTTATGCAGATCACTTCGTAC +
Preference number: 6 (lower is better)
Translates to: TVKKAGRKTFAN*LTSSFMQITSY
Trigger: GTACGAAGTGATCTGCATAAAAGAAGAGGTCAGGCAGTTCGCAAAAGTCTTCCTGCCTGCCTTCTTCACAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000076147.6
ENSMUST00000188000.2
ENSMUST00000219146.2