RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ACER1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000045019

Ensembl transcript IDs: ENSMUST00000056113.5

Found 83 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GAGGGAGAGAAGGTGGGTGGATGGATGGATGGATGGATGGATGGATaGATGGATGGATGGACGGGTGAATGGATGGATGGACAGGTGGAT +
Preference number: 1 (lower is better)
Translates to: EGEKVGGWMDGWMDG*MDGWTGEWMDGQVD
Trigger: ATCCACCTGTCCATCCATCCATTCACCCGTCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCACCCACCTTCTCTCCCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056113.5
3UTR TCA 90 bp CCAGTTGAATCTATAACACTCATAAACAGTCCCAGATGTGCGAGCTaGCAGAGAGCAAGCATTATGCTTCAGGCAGGTGCTGTATCAGCC +
Preference number: 1 (lower is better)
Translates to: PVESITLINSPRCAS*QRASIMLQAGAVSA
Trigger: GGCTGATACAGCACCTGCCTGAAGCATAATGCTTGCTCTCTGTCAGCTCGCACATCTGGGACTGTTTATGAGTGTTATAGATTCAACTGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056113.5
3UTR GCA 90 bp ACAAACAAACTTTGGTCTATGCACCTGCCACACTGTGTGTGCTACTaGATGTGTGTGCAGGTCAGAAGACAATGTGTAGGAGTTGCCTTC +
Preference number: 1 (lower is better)
Translates to: TNKLWSMHLPHCVCY*MCVQVRRQCVGVAF
Trigger: GAAGGCAACTCCTACACATTGTCTTCTGACCTGCACACACATGCAGTAGCACACACAGTGTGGCAGGTGCATAGACCAAAGTTTGTTTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056113.5
3UTR CCA 90 bp CCCTGTCTCGAAAAACCAAAACCAACCAACCAAACAAACAAACTTTaGTCTATGCACCTGCCACACTGTGTGTGCTACTGCATGTGTGTG +
Preference number: 1 (lower is better)
Translates to: PCLEKPKPTNQTNKL*SMHLPHCVCYCMCV
Trigger: CACACACATGCAGTAGCACACACAGTGTGGCAGGTGCATAGACCAAAGTTTGTTTGTTTGGTTGGTTGGTTTTGGTTTTTCGAGACAGGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000056113.5
3UTR GCA 90 bp AACCAAACAAACAAACTTTGGTCTATGCACCTGCCACACTGTGTGTaGTACTGCATGTGTGTGCAGGTCAGAAGACAATGTGTAGGAGTT +
Preference number: 1 (lower is better)
Translates to: NQTNKLWSMHLPHCV*YCMCVQVRRQCVGV
Trigger: AACTCCTACACATTGTCTTCTGACCTGCACACACATGCAGTAGCACACACAGTGTGGCAGGTGCATAGACCAAAGTTTGTTTGTTTGGTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056113.5
3UTR CCA 90 bp CTATACGAATATCTATCTGTAGGTGGTGGGGCCTGGAATGTTCTTTaGATACTCCCCAGTTTCCCAGAATACAGTCATGATCCAGTTGAA +
Preference number: 1 (lower is better)
Translates to: LYEYLSVGGGAWNVL*ILPSFPEYSHDPVE
Trigger: TTCAACTGGATCATGACTGTATTCTGGGAAACTGGGGAGTATCCAAAGAACATTCCAGGCCCCACCACCTACAGATAGATATTCGTATAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000056113.5
3UTR GCA 90 bp TCTCATGCAAATTCTGGGGTTCAGATTCAGGTCATCATATTGAACTaGAAGCCATCAGAGCCATCTGAGCAACCCACACTTGCAATTTTA +
Preference number: 1 (lower is better)
Translates to: SHANSGVQIQVIILN*KPSEPSEQPTLAIL
Trigger: TAAAATTGCAAGTGTGGGTTGCTCAGATGGCTCTGATGGCTTGCAGTTCAATATGATGACCTGAATCTGAACCCCAGAATTTGCATGAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000056113.5
3UTR TCA 90 bp CCTCTATTATCCTCATTCATGGCTCTCATGTTCAACACTTTGCCCTaGGTGCATGTGGTGGTTCAAAGAGGTCTCTATACGAATATCTAT +
Preference number: 1 (lower is better)
Translates to: PLLSSFMALMFNTLP*VHVVVQRGLYTNIY
Trigger: ATAGATATTCGTATAGAGACCTCTTTGAACCACCACATGCACTCAGGGCAAAGTGTTGAACATGAGAGCCATGAATGAGGATAATAGAGG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056113.5
3UTR TCA 90 bp ACAGAAGTCCCAGGAGGGAATGACATTTTATTTACAAACAGCATTTaGAACATCACATCCCTCAGGGCTATGCAAGCTGAATACTGTGGA +
Preference number: 1 (lower is better)
Translates to: TEVPGGNDILFTNSI*NITSLRAMQAEYCG
Trigger: TCCACAGTATTCAGCTTGCATAGCCCTGAGGGATGTGATGTTTCAAATGCTGTTTGTAAATAAAATGTCATTCCCTCCTGGGACTTCTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056113.5
3UTR TCA 90 bp GTGGGTGGGTGGATATTTTCAAGGCTATTCCAAATACTTCACACGTaGCCTAATTTTAATCAACAGAAGTCCCAGGAGGGAATGACATTT +
Preference number: 1 (lower is better)
Translates to: VGGWIFSRLFQILHT*PNFNQQKSQEGMTF
Trigger: AAATGTCATTCCCTCCTGGGACTTCTGTTGATTAAAATTAGGTCACGTGTGAAGTATTTGGAATAGCCTTGAAAATATCCACCCACCCAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000056113.5
3UTR GCA 90 bp GGTCAGAAGACAATGTGTAGGAGTTGCCTTCTATTCTCTTTCTCATaGAAATTCTGGGGTTCAGATTCAGGTCATCATATTGAACTGCAA +
Preference number: 1 (lower is better)
Translates to: GQKTMCRSCLLFSFS*KFWGSDSGHHIELQ
Trigger: TTGCAGTTCAATATGATGACCTGAATCTGAACCCCAGAATTTGCATGAGAAAGAGAATAGAAGGCAACTCCTACACATTGTCTTCTGACC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056113.5
3UTR CCA 90 bp ACAATGTGTAGGAGTTGCCTTCTATTCTCTTTCTCATGCAAATTCTaGGGTTCAGATTCAGGTCATCATATTGAACTGCAAGCCATCAGA +
Preference number: 1 (lower is better)
Translates to: TMCRSCLLFSFSCKF*GSDSGHHIELQAIR
Trigger: TCTGATGGCTTGCAGTTCAATATGATGACCTGAATCTGAACCCCAGAATTTGCATGAGAAAGAGAATAGAAGGCAACTCCTACACATTGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056113.5
3UTR TCA 90 bp TTCACACGTGACCTAATTTTAATCAACAGAAGTCCCAGGAGGGAATaGCATTTTATTTACAAACAGCATTTGAAACATCACATCCCTCAG +
Preference number: 1 (lower is better)
Translates to: FTRDLILINRSPRRE*HFIYKQHLKHHIPQ
Trigger: CTGAGGGATGTGATGTTTCAAATGCTGTTTGTAAATAAAATGTCATTCCCTCCTGGGACTTCTGTTGATTAAAATTAGGTCACGTGTGAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000056113.5
3UTR CAA 90 bp GCATGGGCCGGGGGATGGGTGCTGCAAGTGTGCCCACTGAAAGCCTaGTCCTGCCCTGTATCCTCAGTACACAGGAGACTCGGTGGCTGG +
Preference number: 2 (lower is better)
Translates to: AWAGGWVLQVCPLKA*SCPVSSVHRRLGGW
Trigger: CCAGCCACCGAGTCTCCTGTGTACTGAGGATACAGGGCAGGACAAGGCTTTCAGTGGGCACACTTGCAGCACCCATCCCCCGGCCCATGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000056113.5
3UTR CAA 90 bp CTGAGAACCATGTCTGTGAGGACCCATAGATGCCAGGAGAGGAGGTaGGATCTCCTGGGACTGCCACATGAGTTCTGGGACTCAAACCTG +
Preference number: 2 (lower is better)
Translates to: LRTMSVRTHRCQERR*DLLGLPHEFWDSNL
Trigger: CAGGTTTGAGTCCCAGAACTCATGTGGCAGTCCCAGGAGATCCAACCTCCTCTCCTGGCATCTATGGGTCCTCACAGACATGGTTCTCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056113.5
3UTR-3UTR CCA 90 bp TCTATCTGTAGGTGGTGGGGCCTGGAATGTTCTTTGGATACTCCCCAGTTTCCCAGGAGACTCGGTGGCTaGCCAGAGAGCAGAGACTAC +
Preference number: 2 (lower is better)
Translates to: SICRWWGLECSLDTPQFPRRLGG*PESRDY
Trigger: GTAGTCTCTGCTCTCTGGCCAGCCACCGAGTCTCCT...GGGAAACTGGGGAGTATCCAAAGAACATTCCAGGCCCCACCACCTACAGATAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000056113.5
3UTR-3UTR GCA 90 bp TCTATCTGTAGGTGGTGGGGCCTGGAATGTTCTTTGGATACTCCCCAGTTTCCCAAACAGTCCCAGATGTaGGAGCTGACAGAGAGCAAG +
Preference number: 2 (lower is better)
Translates to: SICRWWGLECSLDTPQFPKQSQM*ELTESK
Trigger: CTTGCTCTCTGTCAGCTCGCACATCTGGGACTGTTT...GGGAAACTGGGGAGTATCCAAAGAACATTCCAGGCCCCACCACCTACAGATAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000056113.5
3UTR-3UTR CCA 90 bp ATTCAGGTCATCATATTGAACTGCAAGCCATCAGAGCCATCTGAGCAACCCACAACACAGGAGACTCGGTaGCTGGCCAGAGAGCAGAGA +
Preference number: 2 (lower is better)
Translates to: IQVIILNCKPSEPSEQPTTQETR*LAREQR
Trigger: TCTCTGCTCTCTGGCCAGCCACCGAGTCTCCTGTGT...TGTGGGTTGCTCAGATGGCTCTGATGGCTTGCAGTTCAATATGATGACCTGAAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056113.5
3UTR-3UTR GCA 90 bp AACCAAACAAACAAACTTTGGTCTATGCACCTGCCACACTGTGTGTGCTACTGCTGGGTGCTGCAAGTGTaGCCACTGAAAGCCTTGTCC +
Preference number: 2 (lower is better)
Translates to: NQTNKLWSMHLPHCVCYCWVLQV*PLKALS
Trigger: GGACAAGGCTTTCAGTGGGCACACTTGCAGCACCCA...GCAGTAGCACACACAGTGTGGCAGGTGCATAGACCAAAGTTTGTTTGTTTGGTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056113.5
3UTR-3UTR CCA 90 bp TGGATCTCCTGGGACTGCCACATGAGTTCTGGGACTCAAACCTGGGTCCTCTACTGGTTGATAAGTGGGTaGGTGGATATTTTCAAGGCT +
Preference number: 2 (lower is better)
Translates to: WISWDCHMSSGTQTWVLYWLISG*VDIFKA
Trigger: AGCCTTGAAAATATCCACCCACCCACTTATCAACCA...GTAGAGGACCCAGGTTTGAGTCCCAGAACTCATGTGGCAGTCCCAGGAGATCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056113.5
3UTR-3UTR CCA 90 bp TGGATCTCCTGGGACTGCCACATGAGTTCTGGGACTCAAACCTGGGTCCTCTACGGATTAAGGGGGAGGTaGAATGAATGGATGGATATA +
Preference number: 2 (lower is better)
Translates to: WISWDCHMSSGTQTWVLYGLRGR*NEWMDI
Trigger: TATATCCATCCATTCATTCCACCTCCCCCTTAATCC...GTAGAGGACCCAGGTTTGAGTCCCAGAACTCATGTGGCAGTCCCAGGAGATCCA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000056113.5
3UTR-3UTR CCA 90 bp CATAGATGCCAGGAGAGGAGGTTGGATCTCCTGGGACTGCCACATGAGTTCTGGCAAACAAACAAACTTTaGTCTATGCACCTGCCACAC +
Preference number: 2 (lower is better)
Translates to: HRCQERRLDLLGLPHEFWQTNKL*SMHLPH
Trigger: GTGTGGCAGGTGCATAGACCAAAGTTTGTTTGTTTG...CCAGAACTCATGTGGCAGTCCCAGGAGATCCAACCTCCTCTCCTGGCATCTATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056113.5
3UTR-3UTR CCA 90 bp CATAGATGCCAGGAGAGGAGGTTGGATCTCCTGGGACTGCCACATGAGTTCTGGTTCTCATGCAAATTCTaGGGTTCAGATTCAGGTCAT +
Preference number: 2 (lower is better)
Translates to: HRCQERRLDLLGLPHEFWFSCKF*GSDSGH
Trigger: ATGACCTGAATCTGAACCCCAGAATTTGCATGAGAA...CCAGAACTCATGTGGCAGTCCCAGGAGATCCAACCTCCTCTCCTGGCATCTATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056113.5
3UTR-3UTR TCA 90 bp AAACCCTGTCTCGAAAAACCAAAACCAACCAACCAAACAAACAAACTTTGGTCTTGCAAGTGTGCCCACTaGAAGCCTTGTCCTGCCCTG +
Preference number: 2 (lower is better)
Translates to: KPCLEKPKPTNQTNKLWSCKCAH*KPCPAL
Trigger: CAGGGCAGGACAAGGCTTTCAGTGGGCACACTTGCA...AGACCAAAGTTTGTTTGTTTGGTTGGTTGGTTTTGGTTTTTCGAGACAGGGTTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000056113.5
3UTR-3UTR CCA 90 bp AACCAAACAAACAAACTTTGGTCTATGCACCTGCCACACTGTGTGTGCTACTGCTCTATCTGTAGGTGGTaGGGCCTGGAATGTTCTTTG +
Preference number: 2 (lower is better)
Translates to: NQTNKLWSMHLPHCVCYCSICRW*GLECSL
Trigger: CAAAGAACATTCCAGGCCCCACCACCTACAGATAGA...GCAGTAGCACACACAGTGTGGCAGGTGCATAGACCAAAGTTTGTTTGTTTGGTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056113.5
3UTR CAA 90 bp ACCCTGTCTCGAAAAACCAAAACCAACCAACCAAACAAACAAACTTaGGTCTATGCACCTGCCACACTGTGTGTGCTACTGCATGTGTGT +
Preference number: 2 (lower is better)
Translates to: TLSRKTKTNQPNKQT*VYAPATLCVLLHVC
Trigger: ACACACATGCAGTAGCACACACAGTGTGGCAGGTGCATAGACCAAAGTTTGTTTGTTTGGTTGGTTGGTTTTGGTTTTTCGAGACAGGGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000056113.5
3UTR-3UTR TCA 90 bp TCAGAGCCATCTGAGCAACCCACACTTGCAATTTTAATTTGTGTAGGTGGATTACCACATCCGTGGCCATaGAGAAGCTGTGGTCTCATA +
Preference number: 2 (lower is better)
Translates to: SEPSEQPTLAILICVGGLPHPWP*RSCGLI
Trigger: TATGAGACCACAGCTTCTTCATGGCCACGGATGTGG...TAATCCACCTACACAAATTAAAATTGCAAGTGTGGGTTGCTCAGATGGCTCTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056113.5
3UTR-3UTR GCA 90 bp CATTCATGGCTCTCATGTTCAACACTTTGCCCTGAGTGCATGTGGTGGTTCAAAAGAGAGCAAGCATTATaGTTCAGGCAGGTGCTGTAT +
Preference number: 2 (lower is better)
Translates to: HSWLSCSTLCPECMWWFKREQAL*FRQVLY
Trigger: ATACAGCACCTGCCTGAAGCATAATGCTTGCTCTCT...TTTGAACCACCACATGCACTCAGGGCAAAGTGTTGAACATGAGAGCCATGAATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056113.5
3UTR-3UTR CCA 90 bp AACCAAACAAACAAACTTTGGTCTATGCACCTGCCACACTGTGTGTGCTACTGCATATCTATCTGTAGGTaGTGGGGCCTGGAATGTTCT +
Preference number: 2 (lower is better)
Translates to: NQTNKLWSMHLPHCVCYCISICR*WGLECS
Trigger: AGAACATTCCAGGCCCCACCACCTACAGATAGATAT...GCAGTAGCACACACAGTGTGGCAGGTGCATAGACCAAAGTTTGTTTGTTTGGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056113.5
3UTR-3UTR CCA 90 bp TGCAAATTCTGGGGTTCAGATTCAGGTCATCATATTGAACTGCAAGCCATCAGATGCCCTGAGTGCATGTaGTGGTTCAAAGAGGTCTCT +
Preference number: 2 (lower is better)
Translates to: CKFWGSDSGHHIELQAIRCPECM*WFKEVS
Trigger: AGAGACCTCTTTGAACCACCACATGCACTCAGGGCA...TCTGATGGCTTGCAGTTCAATATGATGACCTGAATCTGAACCCCAGAATTTGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056113.5
3UTR-3UTR TCA 90 bp TCTCTATACGAATATCTATCTGTAGGTGGTGGGGCCTGGAATGTTCTTTGGATAACCAAACTAGTACCCTaGGCCACAAGTAAATCTACC +
Preference number: 2 (lower is better)
Translates to: SLYEYLSVGGGAWNVLWITKLVP*ATSKST
Trigger: GGTAGATTTACTTGTGGCTCAGGGTACTAGTTTGGT...TATCCAAAGAACATTCCAGGCCCCACCACCTACAGATAGATATTCGTATAGAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056113.5
3UTR-3UTR CCA 90 bp TGCAAATTCTGGGGTTCAGATTCAGGTCATCATATTGAACTGCAAGCCATCAGATATTATCCTCATTCATaGCTCTCATGTTCAACACTT +
Preference number: 2 (lower is better)
Translates to: CKFWGSDSGHHIELQAIRYYPHS*LSCSTL
Trigger: AAGTGTTGAACATGAGAGCCATGAATGAGGATAATA...TCTGATGGCTTGCAGTTCAATATGATGACCTGAATCTGAACCCCAGAATTTGCA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056113.5
3UTR-3UTR CAA 90 bp CCTGTGCTGACGAGCAGGGCAAGGAGCATGGGCCGGGGGATGGGTGCTGCAAGTTGCCCACTGAAAGCCTaGTCCTGCCCTGTATCCTCA +
Preference number: 3 (lower is better)
Translates to: PVLTSRARSMGRGMGAASCPLKA*SCPVSS
Trigger: TGAGGATACAGGGCAGGACAAGGCTTTCAGTGGGCA...ACTTGCAGCACCCATCCCCCGGCCCATGCTCCTTGCCCTGCTCGTCAGCACAGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000056113.5
3UTR GCA 72 bp CAAGGAGCATGGGCCGGGGGATGGGTGCTGCAAGTGTaGCCACTGAAAGCCTTGTCCTGCCCTGTATCCTCA +
Preference number: 3 (lower is better)
Translates to: QGAWAGGWVLQV*PLKALSCPVSS
Trigger: TGAGGATACAGGGCAGGACAAGGCTTTCAGTGGGCACACTTGCAGCACCCATCCCCCGGCCCATGCTCCTTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000056113.5
3UTR TCA 72 bp CATGGGCCGGGGGATGGGTGCTGCAAGTGTGCCCACTaGAAGCCTTGTCCTGCCCTGTATCCTCAGTACACA +
Preference number: 3 (lower is better)
Translates to: HGPGDGCCKCAH*KPCPALYPQYT
Trigger: TGTGTACTGAGGATACAGGGCAGGACAAGGCTTTCAGTGGGCACACTTGCAGCACCCATCCCCCGGCCCATG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000056113.5
3UTR GCA 72 bp TGGGTGCTGCAAGTGTGCCCACTGAAAGCCTTGTCCTaGCCTGTATCCTCAGTACACAGGAGACTCGGTGGC +
Preference number: 3 (lower is better)
Translates to: WVLQVCPLKALS*PVSSVHRRLGG
Trigger: GCCACCGAGTCTCCTGTGTACTGAGGATACAGGGCAGGACAAGGCTTTCAGTGGGCACACTTGCAGCACCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056113.5
3UTR CCA 72 bp ACATCCGTGGCCATGAAGAAGCTGTGGTCTCATAGGTaGACACAGGCCAGTCATCCCACACACCAGGCAGCC +
Preference number: 3 (lower is better)
Translates to: TSVAMKKLWSHR*TQASHPTHQAA
Trigger: GGCTGCCTGGTGTGTGGGATGACTGGCCTGTGTCCACCTATGAGACCACAGCTTCTTCATGGCCACGGATGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056113.5
3UTR CCA 72 bp GGACCCATAGATGCCAGGAGAGGAGGTTGGATCTCCTaGGACTGCCACATGAGTTCTGGGACTCAAACCTGG +
Preference number: 3 (lower is better)
Translates to: GPIDARRGGWIS*DCHMSSGTQTW
Trigger: CCAGGTTTGAGTCCCAGAACTCATGTGGCAGTCCCAGGAGATCCAACCTCCTCTCCTGGCATCTATGGGTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056113.5
3UTR TCA 72 bp CCAGGAGAGGAGGTTGGATCTCCTGGGACTGCCACATaGGTTCTGGGACTCAAACCTGGGTCCTCTACAAGA +
Preference number: 3 (lower is better)
Translates to: PGEEVGSPGTAT*VLGLKPGSSTR
Trigger: TCTTGTAGAGGACCCAGGTTTGAGTCCCAGAACTCATGTGGCAGTCCCAGGAGATCCAACCTCCTCTCCTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056113.5
3UTR GCA 72 bp GTCCCAGATGTGCGAGCTGACAGAGAGCAAGCATTATaGTTCAGGCAGGTGCTGTATCAGCCACACACCCAT +
Preference number: 3 (lower is better)
Translates to: VPDVRADREQAL*FRQVLYQPHTH
Trigger: ATGGGTGTGTGGCTGATACAGCACCTGCCTGAAGCATAATGCTTGCTCTCTGTCAGCTCGCACATCTGGGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056113.5
3UTR GCA 72 bp GAGCTGACAGAGAGCAAGCATTATGCTTCAGGCAGGTaGTGTATCAGCCACACACCCATCTGTTCACCACAT +
Preference number: 3 (lower is better)
Translates to: ELTESKHYASGR*CISHTPICSPH
Trigger: ATGTGGTGAACAGATGGGTGTGTGGCTGATACAGCACCTGCCTGAAGCATAATGCTTGCTCTCTGTCAGCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056113.5
3UTR GCA 72 bp CACGGAGACCCTTTCCCCAATACCCTATCCTCTAAGTaGCCCATGATGTTGCCCAGGTTAGCCCTCTATTAT +
Preference number: 3 (lower is better)
Translates to: HGDPFPNTLSSK*PMMLPRLALYY
Trigger: ATAATAGAGGGCTAACCTGGGCAACATCATGGGGCACTTAGAGGATAGGGTATTGGGGAAAGGGTCTCCGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056113.5
3UTR-3UTR CAA 90 bp TGGATCTCCTGGGACTGCCACATGAGTTCTGGGACTCAAACCTGGGTCCTCTACACTTGCAATTTTAATTaGTGTAGGTGGATTAAGGGG +
Preference number: 3 (lower is better)
Translates to: WISWDCHMSSGTQTWVLYTCNFN*CRWIKG
Trigger: CCCCTTAATCCACCTACACAAATTAAAATTGCAAGT...GTAGAGGACCCAGGTTTGAGTCCCAGAACTCATGTGGCAGTCCCAGGAGATCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056113.5
3UTR TCA 72 bp TCCTCATTCATGGCTCTCATGTTCAACACTTTGCCCTaGGTGCATGTGGTGGTTCAAAGAGGTCTCTATACG +
Preference number: 3 (lower is better)
Translates to: SSFMALMFNTLP*VHVVVQRGLYT
Trigger: CGTATAGAGACCTCTTTGAACCACCACATGCACTCAGGGCAAAGTGTTGAACATGAGAGCCATGAATGAGGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056113.5
3UTR GCA 72 bp AATTCTGGGGTTCAGATTCAGGTCATCATATTGAACTaGAAGCCATCAGAGCCATCTGAGCAACCCACACTT +
Preference number: 3 (lower is better)
Translates to: NSGVQIQVIILN*KPSEPSEQPTL
Trigger: AAGTGTGGGTTGCTCAGATGGCTCTGATGGCTTGCAGTTCAATATGATGACCTGAATCTGAACCCCAGAATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056113.5
3UTR CCA 72 bp TTCAAAGAGGTCTCTATACGAATATCTATCTGTAGGTaGTGGGGCCTGGAATGTTCTTTGGATACTCCCCAG +
Preference number: 3 (lower is better)
Translates to: FKEVSIRISICR*WGLECSLDTPQ
Trigger: CTGGGGAGTATCCAAAGAACATTCCAGGCCCCACCACCTACAGATAGATATTCGTATAGAGACCTCTTTGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000056113.5
3UTR TCA 72 bp CATTTGAAACATCACATCCCTCAGGGCTATGCAAGCTaGATACTGTGGAGCAGAAAATCAAGCTTTGGCATG +
Preference number: 3 (lower is better)
Translates to: HLKHHIPQGYAS*ILWSRKSSFGM
Trigger: CATGCCAAAGCTTGATTTTCTGCTCCACAGTATTCAGCTTGCATAGCCCTGAGGGATGTGATGTTTCAAATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056113.5
3UTR CCA 72 bp AAAGAGGTCTCTATACGAATATCTATCTGTAGGTGGTaGGGCCTGGAATGTTCTTTGGATACTCCCCAGTTT +
Preference number: 3 (lower is better)
Translates to: KEVSIRISICRW*GLECSLDTPQF
Trigger: AAACTGGGGAGTATCCAAAGAACATTCCAGGCCCCACCACCTACAGATAGATATTCGTATAGAGACCTCTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056113.5
3UTR CCA 72 bp TGGCTCTCATGTTCAACACTTTGCCCTGAGTGCATGTaGTGGTTCAAAGAGGTCTCTATACGAATATCTATC +
Preference number: 3 (lower is better)
Translates to: WLSCSTLCPECM*WFKEVSIRISI
Trigger: GATAGATATTCGTATAGAGACCTCTTTGAACCACCACATGCACTCAGGGCAAAGTGTTGAACATGAGAGCCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056113.5
3UTR CCA 72 bp GAAAAACCAAAACCAACCAACCAAACAAACAAACTTTaGTCTATGCACCTGCCACACTGTGTGTGCTACTGC +
Preference number: 3 (lower is better)
Translates to: EKPKPTNQTNKL*SMHLPHCVCYC
Trigger: GCAGTAGCACACACAGTGTGGCAGGTGCATAGACCAAAGTTTGTTTGTTTGGTTGGTTGGTTTTGGTTTTTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000056113.5
3UTR TCA 72 bp GGTCATCATATTGAACTGCAAGCCATCAGAGCCATCTaGGCAACCCACACTTGCAATTTTAATTTGTGTAGG +
Preference number: 3 (lower is better)
Translates to: GHHIELQAIRAI*ATHTCNFNLCR
Trigger: CCTACACAAATTAAAATTGCAAGTGTGGGTTGCTCAGATGGCTCTGATGGCTTGCAGTTCAATATGATGACC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056113.5
3UTR CCA 72 bp AGGAGTTGCCTTCTATTCTCTTTCTCATGCAAATTCTaGGGTTCAGATTCAGGTCATCATATTGAACTGCAA +
Preference number: 3 (lower is better)
Translates to: RSCLLFSFSCKF*GSDSGHHIELQ
Trigger: TTGCAGTTCAATATGATGACCTGAATCTGAACCCCAGAATTTGCATGAGAAAGAGAATAGAAGGCAACTCCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056113.5
3UTR-3UTR CAA 90 bp AGACAATGTGTAGGAGTTGCCTTCTATTCTCTTTCTCATGCAAATTCTGGGGTTATTTACAAACAGCATTaGAAACATCACATCCCTCAG +
Preference number: 3 (lower is better)
Translates to: RQCVGVAFYSLSHANSGVIYKQH*KHHIPQ
Trigger: CTGAGGGATGTGATGTTTCAAATGCTGTTTGTAAAT...AACCCCAGAATTTGCATGAGAAAGAGAATAGAAGGCAACTCCTACACATTGTCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056113.5
3UTR GCA 72 bp ACAATGTGTAGGAGTTGCCTTCTATTCTCTTTCTCATaGAAATTCTGGGGTTCAGATTCAGGTCATCATATT +
Preference number: 3 (lower is better)
Translates to: TMCRSCLLFSFS*KFWGSDSGHHI
Trigger: AATATGATGACCTGAATCTGAACCCCAGAATTTGCATGAGAAAGAGAATAGAAGGCAACTCCTACACATTGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056113.5
CDS-3UTR TCA 90 bp GCCTTGTCCTGCCCTGTATCCTCAGTACACAGGAGACTCGGTGGCTGGCCAGAGCTCGGCCACCAACTCTaGGTGCTGGAAATTACTCTC +
Preference number: 4 (lower is better)
Translates to: ALSCPVSSVHRRLGGWPELGHQL*VLEITL
Trigger: GAGAGTAATTTCCAGCACTCAGAGTTGGTGGCCGAG...CTCTGGCCAGCCACCGAGTCTCCTGTGTACTGAGGATACAGGGCAGGACAAGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056113.5
3UTR CAA 72 bp GGGGGATGGGTGCTGCAAGTGTGCCCACTGAAAGCCTaGTCCTGCCCTGTATCCTCAGTACACAGGAGACTC +
Preference number: 4 (lower is better)
Translates to: GGWVLQVCPLKA*SCPVSSVHRRL
Trigger: GAGTCTCCTGTGTACTGAGGATACAGGGCAGGACAAGGCTTTCAGTGGGCACACTTGCAGCACCCATCCCCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000056113.5
CDS-3UTR TCA 90 bp AGCCTTGTCCTGCCCTGTATCCTCAGTACACAGGAGACTCGGTGGCTGGCCAGAGGAAGAACACATTGCTaGACGTATTGTAGAACTCGG +
Preference number: 4 (lower is better)
Translates to: SLVLPCILSTQETRWLARGRTHC*TYCRTR
Trigger: CCGAGTTCTACAATACGTTCAGCAATGTGTTCTTCC...TCTGGCCAGCCACCGAGTCTCCTGTGTACTGAGGATACAGGGCAGGACAAGGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056113.5
CDS-3UTR TCA 90 bp TGGATCTCCTGGGACTGCCACATGAGTTCTGGGACTCAAACCTGGGTCCTCTACGCTGTCCCAGAAAGCTaGGTGTCATGTGGAAATACA +
Preference number: 4 (lower is better)
Translates to: WISWDCHMSSGTQTWVLYAVPES*VSCGNT
Trigger: TGTATTTCCACATGACACTCAGCTTTCTGGGACAGC...GTAGAGGACCCAGGTTTGAGTCCCAGAACTCATGTGGCAGTCCCAGGAGATCCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056113.5
CDS-3UTR TCA 90 bp TCTATCTGTAGGTGGTGGGGCCTGGAATGTTCTTTGGATACTCCCCAGTTTCCCAAAGTACACGGTCACTaGTCCAGCTGGTCAGTGCAG +
Preference number: 4 (lower is better)
Translates to: SICRWWGLECSLDTPQFPKVHGH*SSWSVQ
Trigger: CTGCACTGACCAGCTGGATCAGTGACCGTGTACTTT...GGGAAACTGGGGAGTATCCAAAGAACATTCCAGGCCCCACCACCTACAGATAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000056113.5
CDS-3UTR CCA 90 bp GTGCTGTATCAGCCACACACCCATCTGTTCACCACATCCGTGGCCATGAAGAAGCATCCACCAGGGCCATaGTCACGATACCATAAGGAA +
Preference number: 4 (lower is better)
Translates to: VLYQPHTHLFTTSVAMKKHPPGP*SRYHKE
Trigger: TTCCTTATGGTATCGTGACCATGGCCCTGGTGGATG...CTTCTTCATGGCCACGGATGTGGTGAACAGATGGGTGTGTGGCTGATACAGCAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056113.5
CDS-3UTR CCA 90 bp TCCGTGGCCATGAAGAAGCTGTGGTCTCATAGGTGGACACAGGCCAGTCATCCCACCAACTCTGAGTGCTaGAAATTACTCTCACACCAA +
Preference number: 4 (lower is better)
Translates to: SVAMKKLWSHRWTQASHPTNSEC*KLLSHQ
Trigger: TTGGTGTGAGAGTAATTTCCAGCACTCAGAGTTGGT...GGGATGACTGGCCTGTGTCCACCTATGAGACCACAGCTTCTTCATGGCCACGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056113.5
CDS-3UTR TCA 90 bp CATTCATGGCTCTCATGTTCAACACTTTGCCCTGAGTGCATGTGGTGGTTCAAAAGAACCTGTTCCCCTTaGCGAACTTGGGAAAATAGC +
Preference number: 4 (lower is better)
Translates to: HSWLSCSTLCPECMWWFKRTCSP*RTWENS
Trigger: GCTATTTTCCCAAGTTCGTCAAGGGGAACAGGTTCT...TTTGAACCACCACATGCACTCAGGGCAAAGTGTTGAACATGAGAGCCATGAATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000056113.5
CDS-3UTR GCA 90 bp TGCAAATTCTGGGGTTCAGATTCAGGTCATCATATTGAACTGCAAGCCATCAGATGGCATCTCATACTTTaGATCCACCAGGGCCATGGT +
Preference number: 4 (lower is better)
Translates to: CKFWGSDSGHHIELQAIRWHLIL*IHQGHG
Trigger: ACCATGGCCCTGGTGGATGCAAAGTATGAGATGCCA...TCTGATGGCTTGCAGTTCAATATGATGACCTGAATCTGAACCCCAGAATTTGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056113.5
CDS-3UTR TCA 90 bp TCAGAGCCATCTGAGCAACCCACACTTGCAATTTTAATTTGTGTAGGTGGATTAGAGCATGAAGAGGACTaGCACTCCATAGAAACACCG +
Preference number: 4 (lower is better)
Translates to: SEPSEQPTLAILICVGGLEHEED*HSIETP
Trigger: CGGTGTTTCTATGGAGTGTCAGTCCTCTTCATGCTC...TAATCCACCTACACAAATTAAAATTGCAAGTGTGGGTTGCTCAGATGGCTCTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056113.5
CDS-3UTR GCA 90 bp AACCAAACAAACAAACTTTGGTCTATGCACCTGCCACACTGTGTGTGCTACTGCTCTTCTTGTACTCTGTaGGCACAATGTAGAGGATGT +
Preference number: 4 (lower is better)
Translates to: NQTNKLWSMHLPHCVCYCSSCTL*AQCRGC
Trigger: ACATCCTCTACATTGTGCGCACAGAGTACAAGAAGA...GCAGTAGCACACACAGTGTGGCAGGTGCATAGACCAAAGTTTGTTTGTTTGGTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056113.5
3UTR CAA 72 bp CGAAAAACCAAAACCAACCAACCAAACAAACAAACTTaGGTCTATGCACCTGCCACACTGTGTGTGCTACTG +
Preference number: 4 (lower is better)
Translates to: RKTKTNQPNKQT*VYAPATLCVLL
Trigger: CAGTAGCACACACAGTGTGGCAGGTGCATAGACCAAAGTTTGTTTGTTTGGTTGGTTGGTTTTGGTTTTTCG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000056113.5
CDS-3UTR CCA 90 bp AACCAAACAAACAAACTTTGGTCTATGCACCTGCCACACTGTGTGTGCTACTGCTTTGAGGGTTTTATCTaGCATCTCATACTTTGCATC +
Preference number: 4 (lower is better)
Translates to: NQTNKLWSMHLPHCVCYCFEGFI*HLILCI
Trigger: GATGCAAAGTATGAGATGCCAGATAAAACCCTCAAA...GCAGTAGCACACACAGTGTGGCAGGTGCATAGACCAAAGTTTGTTTGTTTGGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056113.5
CDS-3UTR CAA 90 bp AGCCTTGTCCTGCCCTGTATCCTCAGTACACAGGAGACTCGGTGGCTGGCCAGACTGGCATCTCATACTTaGCATCCACCAGGGCCATGG +
Preference number: 5 (lower is better)
Translates to: SLVLPCILSTQETRWLARLASHT*HPPGPW
Trigger: CCATGGCCCTGGTGGATGCAAAGTATGAGATGCCAG...TCTGGCCAGCCACCGAGTCTCCTGTGTACTGAGGATACAGGGCAGGACAAGGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056113.5
CDS CCA 90 bp GACCCAGCTGTCCCGGGGCCAGTAGTGGACTTTGAGGGTTTTATCTaGCATCTCATACTTTGCATCCACCAGGGCCATGGTCACGATACC +
Preference number: 5 (lower is better)
Translates to: DPAVPGPVVDFEGFI*HLILCIHQGHGHDT
Trigger: GGTATCGTGACCATGGCCCTGGTGGATGCAAAGTATGAGATGCCAGATAAAACCCTCAAAGTCCACTACTGGCCCCGGGACAGCTGGGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000056113.5
CDS TCA 90 bp AGTAGAAGTGAATCCGCTGCCAGAAGCTGCAAAGTACACGGTCACTaGTCCAGCTGGTCAGTGCAGCGGCCCATAAGACCACAGAAACCG +
Preference number: 5 (lower is better)
Translates to: SRSESAARSCKVHGH*SSWSVQRPIRPQKP
Trigger: CGGTTTCTGTGGTCTTATGGGCCGCTGCACTGACCAGCTGGATCAGTGACCGTGTACTTTGCAGCTTCTGGCAGCGGATTCACTTCTACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056113.5
CDS CCA 90 bp CGAACTTGGGAAAATAGCAACGGGGCAGCCACACACTGTATCCACTaGCCAACAACCACAGGATGGAGATCTCATCCAGCAGCTGTCCCA +
Preference number: 5 (lower is better)
Translates to: RTWENSNGAATHCIH*PTTTGWRSHPAAVP
Trigger: TGGGACAGCTGCTGGATGAGATCTCCATCCTGTGGTTGTTGGCCAGTGGATACAGTGTGTGGCTGCCCCGTTGCTATTTTCCCAAGTTCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000056113.5
CDS GCA 90 bp CTGGTCAGTGCAGCGGCCCATAAGACCACAGAAACCGCAATCAGATaGCGAAGATCATCATCCCTAATCTTCTTGTACTCTGTGCGCACA +
Preference number: 5 (lower is better)
Translates to: LVSAAAHKTTETAIR*RRSSSLIFLYSVRT
Trigger: TGTGCGCACAGAGTACAAGAAGATTAGGGATGATGATCTTCGGCATCTGATTGCGGTTTCTGTGGTCTTATGGGCCGCTGCACTGACCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056113.5
CDS-3UTR CAA 90 bp GTGCTGTATCAGCCACACACCCATCTGTTCACCACATCCGTGGCCATGAAGAAGTTGAGAGCATATGCATaGACTGTGGGCTTCACGAAC +
Preference number: 5 (lower is better)
Translates to: VLYQPHTHLFTTSVAMKKLRAYA*TVGFTN
Trigger: GTTCGTGAAGCCCACAGTCAATGCATATGCTCTCAA...CTTCTTCATGGCCACGGATGTGGTGAACAGATGGGTGTGTGGCTGATACAGCAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056113.5
CDS GCA 90 bp GCGCACAATGTAGAGGATGTGGATGGCGATGCTGTTGAGAGCATATaGATTGACTGTGGGCTTCACGAACGTCAAGAAGGTGCTGATAAT +
Preference number: 5 (lower is better)
Translates to: AHNVEDVDGDAVESI*IDCGLHERQEGADN
Trigger: ATTATCAGCACCTTCTTGACGTTCGTGAAGCCCACAGTCAATGCATATGCTCTCAACAGCATCGCCATCCACATCCTCTACATTGTGCGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056113.5
CDS-3UTR CAA 90 bp TTTTTACATGTTAAAAACCTTTGTCTGCCGAGCGTGGTGGCACACGCCTTTAATAGATGCTGGACATCTTaGCTCTGGTGCCCGGTACAT +
Preference number: 5 (lower is better)
Translates to: FLHVKNLCLPSVVAHAFNRCWTS*LWCPVH
Trigger: ATGTACCGGGCACCAGAGCAAAGATGTCCAGCATCT...ATTAAAGGCGTGTGCCACCACGCTCGGCAGACAAAGGTTTTTAACATGTAAAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000056113.5
CDS TCA 72 bp GAATCCGCTGCCAGAAGCTGCAAAGTACACGGTCACTaGTCCAGCTGGTCAGTGCAGCGGCCCATAAGACCA +
Preference number: 6 (lower is better)
Translates to: ESAARSCKVHGH*SSWSVQRPIRP
Trigger: TGGTCTTATGGGCCGCTGCACTGACCAGCTGGATCAGTGACCGTGTACTTTGCAGCTTCTGGCAGCGGATTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056113.5
CDS CCA 72 bp GTCCCGGGGCCAGTAGTGGACTTTGAGGGTTTTATCTaGCATCTCATACTTTGCATCCACCAGGGCCATGGT +
Preference number: 6 (lower is better)
Translates to: VPGPVVDFEGFI*HLILCIHQGHG
Trigger: ACCATGGCCCTGGTGGATGCAAAGTATGAGATGCCAGATAAAACCCTCAAAGTCCACTACTGGCCCCGGGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000056113.5
CDS CCA 72 bp GAAAATAGCAACGGGGCAGCCACACACTGTATCCACTaGCCAACAACCACAGGATGGAGATCTCATCCAGCA +
Preference number: 6 (lower is better)
Translates to: ENSNGAATHCIH*PTTTGWRSHPA
Trigger: TGCTGGATGAGATCTCCATCCTGTGGTTGTTGGCCAGTGGATACAGTGTGTGGCTGCCCCGTTGCTATTTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000056113.5
CDS GCA 72 bp CACACCAATCCACCTCAGAACTCTGATAGGCAAAGATaGTGGACATCTTTGCTCTGGTGCCCGGTACATGCA +
Preference number: 6 (lower is better)
Translates to: HTNPPQNSDRQR*WTSLLWCPVHA
Trigger: TGCATGTACCGGGCACCAGAGCAAAGATGTCCAGCATCTTTGCCTATCAGAGTTCTGAGGTGGATTGGTGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056113.5
CDS CAA 72 bp AGGATGTGGATGGCGATGCTGTTGAGAGCATATGCATaGACTGTGGGCTTCACGAACGTCAAGAAGGTGCTG +
Preference number: 6 (lower is better)
Translates to: RMWMAMLLRAYA*TVGFTNVKKVL
Trigger: CAGCACCTTCTTGACGTTCGTGAAGCCCACAGTCAATGCATATGCTCTCAACAGCATCGCCATCCACATCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056113.5
CDS TCA 72 bp ATACATGGAGAACAGACCTATGAGCATGAAGAGGACTaGCACTCCATAGAAACACCGGGTACGCTTCTGGGC +
Preference number: 6 (lower is better)
Translates to: IHGEQTYEHEED*HSIETPGTLLG
Trigger: GCCCAGAAGCGTACCCGGTGTTTCTATGGAGTGTCAGTCCTCTTCATGCTCATAGGTCTGTTCTCCATGTAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056113.5
CDS GCA 72 bp GTAGAGGATGTGGATGGCGATGCTGTTGAGAGCATATaGATTGACTGTGGGCTTCACGAACGTCAAGAAGGT +
Preference number: 6 (lower is better)
Translates to: VEDVDGDAVESI*IDCGLHERQEG
Trigger: ACCTTCTTGACGTTCGTGAAGCCCACAGTCAATGCATATGCTCTCAACAGCATCGCCATCCACATCCTCTAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056113.5
CDS GCA 72 bp GCAGCGGCCCATAAGACCACAGAAACCGCAATCAGATaGCGAAGATCATCATCCCTAATCTTCTTGTACTCT +
Preference number: 6 (lower is better)
Translates to: AAAHKTTETAIR*RRSSSLIFLYS
Trigger: AGAGTACAAGAAGATTAGGGATGATGATCTTCGGCATCTGATTGCGGTTTCTGTGGTCTTATGGGCCGCTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056113.5