Pregenerated sensors for ACCSL (Mus musculus)
Ensembl gene IDs: ENSMUSG00000075023Ensembl transcript IDs: ENSMUST00000099690.4, ENSMUST00000132722.2, ENSMUST00000133562.2, ENSMUST00000143033.8
Found 63 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | GACTCGATGAGTGAGGTCAGACAGCACGGTGACTCCAATTCCTCCTCCTGTCTCTCTGGAGCCACTGGGTaGGGGCAGCAGTCTATGTCC | + |
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Preference number: 2 (lower is better) Translates to: DSMSEVRQHGDSNSSSCLSGATG*GQQSMS Trigger: GGACATAGACTGCTGCCCCCACCCAGTGGCTCCAGA...GAGACAGGAGGAGGAATTGGAGTCACCGTGCTGTCTGACCTCACTCATCGAGTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000099690.4 ENSMUST00000132722.2 |
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| 3UTR-3UTR TCA 90 bp | CTTAGGCCTTCTCCCTCCTACTACAATAAAAACATCATTTTGAGCACAGTCTGGGGGCCCCTGAGCAAGTaGCAGCAGGCTCTCTGGAGC | + |
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Preference number: 2 (lower is better) Translates to: LRPSPSYYNKNIILSTVWGPLSK*QQALWS Trigger: GCTCCAGAGAGCCTGCTGTCACTTGCTCAGGGGCCC...CCAGACTGTGCTCAAAATGATGTTTTTATTGTAGTAGGAGGGAGAAGGCCTAAG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 2 transcripts: ENSMUST00000099690.4 ENSMUST00000132722.2 |
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| 3UTR-3UTR TCA 90 bp | AAAGAAACAAGGCTTCTAAAAATGTCAGACACTCAGCGTAGGGGACTCGATGAGACTTTCAGGGGCCCCTaGGCAAGTGACAGCAGGCTC | + |
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Preference number: 2 (lower is better) Translates to: KETRLLKMSDTQRRGLDETFRGP*ASDSRL Trigger: GAGCCTGCTGTCACTTGCTCAGGGGCCCCTGAAAGT...CTCATCGAGTCCCCTACGCTGAGTGTCTGACATTTTTAGAAGCCTTGTTTCTTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000099690.4 ENSMUST00000132722.2 |
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| 3UTR-3UTR CCA 90 bp | AGCACAGTCTGGCTAGCGAAGACTAAAAGAAACAAGGCTTCTAAAAATGTCAGATCTGGAGCCACTGGGTaGGGGCAGCAGTCTATGTCC | + |
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Preference number: 2 (lower is better) Translates to: STVWLAKTKRNKASKNVRSGATG*GQQSMS Trigger: GGACATAGACTGCTGCCCCCACCCAGTGGCTCCAGA...TCTGACATTTTTAGAAGCCTTGTTTCTTTTAGTCTTCGCTAGCCAGACTGTGCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000099690.4 ENSMUST00000132722.2 |
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| 3UTR TCA 72 bp | CTGTCTCCTGGCCACGAGGTTACTTTCAGGGGCCCCTaGGCAAGTGACAGCAGGCTCTCTGGAGCCACTGGG | + |
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Preference number: 3 (lower is better) Translates to: LSPGHEVTFRGP*ASDSRLSGATG Trigger: CCCAGTGGCTCCAGAGAGCCTGCTGTCACTTGCTCAGGGGCCCCTGAAAGTAACCTCGTGGCCAGGAGACAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000099690.4 ENSMUST00000132722.2 |
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| 3UTR CCA 72 bp | GACAGCACGGTGACTCCAATTCCTCCTCCTGTCTCCTaGCCACGAGGTTACTTTCAGGGGCCCCTGAGCAAG | + |
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Preference number: 3 (lower is better) Translates to: DSTVTPIPPPVS*PRGYFQGPLSK Trigger: CTTGCTCAGGGGCCCCTGAAAGTAACCTCGTGGCCAGGAGACAGGAGGAGGAATTGGAGTCACCGTGCTGTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000099690.4 ENSMUST00000132722.2 |
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| CDS-3UTR GCA 90 bp | CTGGAGCCACTGGGTGGGGGCAGCAGTCTATGTCCTGGCTGCCTGCTCCTGCTGGTGAAGGTGGGTTTCTaGAAAGACGAGTCGGAACCA | + |
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Preference number: 4 (lower is better) Translates to: LEPLGGGSSLCPGCLLLLVKVGF*KDESEP Trigger: TGGTTCCGACTCGTCTTTGCAGAAACCCACCTTCAC...CAGCAGGAGCAGGCAGCCAGGACATAGACTGCTGCCCCCACCCAGTGGCTCCAG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000099690.4 ENSMUST00000132722.2 |
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| CDS-3UTR CCA 90 bp | GGAATCCGGGGAACAGCCTTTACCTCTCCAGGGTTCCTTAGGCCTTCTCCCTCCAGACTAGGCCTGGATTaGCCAGTCTGCCAAGGTGAC | + |
|
Preference number: 4 (lower is better) Translates to: GIRGTAFTSPGFLRPSPSRLGLD*PVCQGD Trigger: GTCACCTTGGCAGACTGGCCAATCCAGGCCTAGTCT...GGAGGGAGAAGGCCTAAGGAACCCTGGAGAGGTAAAGGCTGTTCCCCGGATTCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099690.4 |
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| CDS-3UTR GCA 90 bp | GACTCGATGAGTGAGGTCAGACAGCACGGTGACTCCAATTCCTCCTCCTGTCTCGGTGACAGGGTCTGGTaGCCAACTTTGATGCCACAT | + |
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Preference number: 4 (lower is better) Translates to: DSMSEVRQHGDSNSSSCLGDRVW*PTLMPH Trigger: ATGTGGCATCAAAGTTGGGCACCAGACCCTGTCACC...GAGACAGGAGGAGGAATTGGAGTCACCGTGCTGTCTGACCTCACTCATCGAGTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099690.4 |
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| CDS-3UTR CCA 90 bp | GTCAGACAGCACGGTGACTCCAATTCCTCCTCCTGTCTCCTGGCCACGAGGTTAACGCACTGCATCTGCTaGCTTATCTGCTGCAAGAAC | + |
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Preference number: 4 (lower is better) Translates to: VRQHGDSNSSSCLLATRLTHCIC*LICCKN Trigger: GTTCTTGCAGCAGATAAGCCAGCAGATGCAGTGCGT...TAACCTCGTGGCCAGGAGACAGGAGGAGGAATTGGAGTCACCGTGCTGTCTGAC 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099690.4 |
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| CDS-3UTR CCA 90 bp | CTGGAGCCACTGGGTGGGGGCAGCAGTCTATGTCCTGGCTGCCTGCTCCTGCTGTTGGTCAAATGTGCATaGACTCAGATAAGCTTTCAA | + |
|
Preference number: 4 (lower is better) Translates to: LEPLGGGSSLCPGCLLLLLVKCA*TQISFQ Trigger: TTGAAAGCTTATCTGAGTCCATGCACATTTGACCAA...CAGCAGGAGCAGGCAGCCAGGACATAGACTGCTGCCCCCACCCAGTGGCTCCAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000099690.4 |
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| CDS-3UTR TCA 90 bp | GGAATCCGGGGAACAGCCTTTACCTCTCCAGGGTTCCTTAGGCCTTCTCCCTCCTCTCCTGCACAAATTTaGAGCCCTTCTTTTTGGAGG | + |
|
Preference number: 4 (lower is better) Translates to: GIRGTAFTSPGFLRPSPSSPAQI*SPSFWR Trigger: CCTCCAAAAAGAAGGGCTTCAAATTTGTGCAGGAGA...GGAGGGAGAAGGCCTAAGGAACCCTGGAGAGGTAAAGGCTGTTCCCCGGATTCC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000099690.4 |
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| CDS-3UTR TCA 90 bp | GACAGCACGGTGACTCCAATTCCTCCTCCTGTCTCCTGGCCACGAGGTTACTTTATGGCCACTTGTAGGTaGAGGTGGGTTTCTGCAAAG | + |
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Preference number: 4 (lower is better) Translates to: DSTVTPIPPPVSWPRGYFMATCR*RWVSAK Trigger: CTTTGCAGAAACCCACCTTCACCTACAAGTGGCCAT...AAAGTAACCTCGTGGCCAGGAGACAGGAGGAGGAATTGGAGTCACCGTGCTGTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000099690.4 ENSMUST00000132722.2 |
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| CDS-3UTR GCA 90 bp | GACAGCACGGTGACTCCAATTCCTCCTCCTGTCTCCTGGCCACGAGGTTACTTTGAACACCAAAGCGGATaGCAGACATGCCGAAATCCT | + |
|
Preference number: 4 (lower is better) Translates to: DSTVTPIPPPVSWPRGYFEHQSG*QTCRNP Trigger: AGGATTTCGGCATGTCTGGCATCCGCTTTGGTGTTC...AAAGTAACCTCGTGGCCAGGAGACAGGAGGAGGAATTGGAGTCACCGTGCTGTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099690.4 |
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| CDS-3UTR GCA 90 bp | TGTCTCCTGGCCACGAGGTTACTTTCAGGGGCCCCTGAGCAAGTGACAGCAGGCGCTCTTGGTCAAATGTaGATGGACTCAGATAAGCTT | + |
|
Preference number: 4 (lower is better) Translates to: CLLATRLLSGAPEQVTAGALGQM*MDSDKL Trigger: AAGCTTATCTGAGTCCATGCACATTTGACCAAGAGC...GCCTGCTGTCACTTGCTCAGGGGCCCCTGAAAGTAACCTCGTGGCCAGGAGACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000099690.4 |
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| CDS-3UTR GCA 90 bp | GACAGCACGGTGACTCCAATTCCTCCTCCTGTCTCCTGGCCACGAGGTTACTTTGTGAAGGTGGGTTTCTaGAAAGACGAGTCGGAACCA | + |
|
Preference number: 4 (lower is better) Translates to: DSTVTPIPPPVSWPRGYFVKVGF*KDESEP Trigger: TGGTTCCGACTCGTCTTTGCAGAAACCCACCTTCAC...AAAGTAACCTCGTGGCCAGGAGACAGGAGGAGGAATTGGAGTCACCGTGCTGTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000099690.4 ENSMUST00000132722.2 |
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| CDS-3UTR TCA 90 bp | AGACAGCACGGTGACTCCAATTCCTCCTCCTGTCTCCTGGCCACGAGGTTACTTGATAAGCTTTCAAGTTaGTCCAGACAAAGAGGCCAG | + |
|
Preference number: 4 (lower is better) Translates to: RQHGDSNSSSCLLATRLLDKLSS*SRQRGQ Trigger: CTGGCCTCTTTGTCTGGATCAACTTGAAAGCTTATC...AAGTAACCTCGTGGCCAGGAGACAGGAGGAGGAATTGGAGTCACCGTGCTGTCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099690.4 |
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| CDS-3UTR GCA 90 bp | GTCAGACAGCACGGTGACTCCAATTCCTCCTCCTGTCTCCTGGCCACGAGGTTATTCAACATCTTCTCCTaGACAAATTTGAAGCCCTTC | + |
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Preference number: 4 (lower is better) Translates to: VRQHGDSNSSSCLLATRLFNIFS*TNLKPF Trigger: GAAGGGCTTCAAATTTGTGCAGGAGAAGATGTTGAA...TAACCTCGTGGCCAGGAGACAGGAGGAGGAATTGGAGTCACCGTGCTGTCTGAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099690.4 |
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| CDS-3UTR CCA 90 bp | CCTTTACCTCTCCAGGGTTCCTTAGGCCTTCTCCCTCCTACTACAATAAAAACATTAGCCTTGGCAGCCTaGCTGGAGCCTTCATTTCTG | + |
|
Preference number: 4 (lower is better) Translates to: PLPLQGSLGLLPPTTIKTLALAA*LEPSFL Trigger: CAGAAATGAAGGCTCCAGCCAGGCTGCCAAGGCTAA...TGTTTTTATTGTAGTAGGAGGGAGAAGGCCTAAGGAACCCTGGAGAGGTAAAGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000099690.4 |
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| CDS-3UTR CCA 90 bp | AGACAGCACGGTGACTCCAATTCCTCCTCCTGTCTCCTGGCCACGAGGTTACTTGACTTTGAAGTGACTTaGAGTCTGGGTATCACTATT | + |
|
Preference number: 4 (lower is better) Translates to: RQHGDSNSSSCLLATRLLDFEVT*SLGITI Trigger: AATAGTGATACCCAGACTCCAAGTCACTTCAAAGTC...AAGTAACCTCGTGGCCAGGAGACAGGAGGAGGAATTGGAGTCACCGTGCTGTCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099690.4 |
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| CDS-3UTR GCA 90 bp | CTTAGGCCTTCTCCCTCCTACTACAATAAAAACATCATTTTGAGCACAGTCTGGGGGACGCACTGCATCTaGTGGCTTATCTGCTGCAAG | + |
|
Preference number: 4 (lower is better) Translates to: LRPSPSYYNKNIILSTVWGTHCI*WLICCK Trigger: CTTGCAGCAGATAAGCCAGCAGATGCAGTGCGTCCC...CCAGACTGTGCTCAAAATGATGTTTTTATTGTAGTAGGAGGGAGAAGGCCTAAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000099690.4 |
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| CDS-3UTR TCA 90 bp | CCTTTACCTCTCCAGGGTTCCTTAGGCCTTCTCCCTCCTACTACAATAAAAACAAATAGAGGTGGGAGCTaGAGACAAAGCCATTGTAGC | + |
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Preference number: 4 (lower is better) Translates to: PLPLQGSLGLLPPTTIKTNRGGS*RQSHCS Trigger: GCTACAATGGCTTTGTCTTCAGCTCCCACCTCTATT...TGTTTTTATTGTAGTAGGAGGGAGAAGGCCTAAGGAACCCTGGAGAGGTAAAGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000099690.4 |
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| CDS-3UTR CCA 90 bp | AAAGAAACAAGGCTTCTAAAAATGTCAGACACTCAGCGTAGGGGACTCGATGAGGGTCACACAGAACCATaGCCAGTGAAGCAAAGACTG | + |
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Preference number: 4 (lower is better) Translates to: KETRLLKMSDTQRRGLDEGHTEP*PVKQRL Trigger: CAGTCTTTGCTTCACTGGCCATGGTTCTGTGTGACC...CTCATCGAGTCCCCTACGCTGAGTGTCTGACATTTTTAGAAGCCTTGTTTCTTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000099690.4 |
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| CDS-3UTR TCA 90 bp | TCCTACTACAATAAAAACATCATTTTGAGCACAGTCTGGCTAGCGAAGACTAAAGACTTCTTCTTCAGCTaGTCCCTGAGTCTGGGGTGG | + |
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Preference number: 4 (lower is better) Translates to: SYYNKNIILSTVWLAKTKDFFFS*SLSLGW Trigger: CCACCCCAGACTCAGGGATCAGCTGAAGAAGAAGTC...TTTAGTCTTCGCTAGCCAGACTGTGCTCAAAATGATGTTTTTATTGTAGTAGGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000099690.4 |
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| CDS-3UTR TCA 90 bp | AGCACAGTCTGGCTAGCGAAGACTAAAAGAAACAAGGCTTCTAAAAATGTCAGAATGGCCACTTGTAGGTaGAGGTGGGTTTCTGCAAAG | + |
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Preference number: 4 (lower is better) Translates to: STVWLAKTKRNKASKNVRMATCR*RWVSAK Trigger: CTTTGCAGAAACCCACCTTCACCTACAAGTGGCCAT...TCTGACATTTTTAGAAGCCTTGTTTCTTTTAGTCTTCGCTAGCCAGACTGTGCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000099690.4 ENSMUST00000132722.2 |
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| CDS-3UTR TCA 90 bp | AGCACAGTCTGGCTAGCGAAGACTAAAAGAAACAAGGCTTCTAAAAATGTCAGAAGACGGCTCAAACACTaGCAGCATGTAAATCTCGTC | + |
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Preference number: 4 (lower is better) Translates to: STVWLAKTKRNKASKNVRRRLKH*QHVNLV Trigger: GACGAGATTTACATGCTGTCAGTGTTTGAGCCGTCT...TCTGACATTTTTAGAAGCCTTGTTTCTTTTAGTCTTCGCTAGCCAGACTGTGCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000099690.4 |
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| CDS-3UTR TCA 90 bp | TCTCCCTCCTACTACAATAAAAACATCATTTTGAGCACAGTCTGGCTAGCGAAGTTCCTGATGACATGCTaGAACTTCAACATCTTCTCC | + |
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Preference number: 4 (lower is better) Translates to: SPSYYNKNIILSTVWLAKFLMTC*NFNIFS Trigger: GGAGAAGATGTTGAAGTTTCAGCATGTCATCAGGAA...CTTCGCTAGCCAGACTGTGCTCAAAATGATGTTTTTATTGTAGTAGGAGGGAGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000099690.4 |
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| 3UTR CAA 72 bp | AGGCCTTCTCCCTCCTACTACAATAAAAACATCATTTaGAGCACAGTCTGGCTAGCGAAGACTAAAAGAAAC | + |
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Preference number: 4 (lower is better) Translates to: RPSPSYYNKNII*STVWLAKTKRN Trigger: GTTTCTTTTAGTCTTCGCTAGCCAGACTGTGCTCAAAATGATGTTTTTATTGTAGTAGGAGGGAGAAGGCCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000099690.4 ENSMUST00000132722.2 |
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| CDS-3UTR GCA 90 bp | TCCTACTACAATAAAAACATCATTTTGAGCACAGTCTGGCTAGCGAAGACTAAACAGGCAAGTCTTTTATaGTCAGAACGCTGTGAAATG | + |
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Preference number: 4 (lower is better) Translates to: SYYNKNIILSTVWLAKTKQASLL*SERCEM Trigger: CATTTCACAGCGTTCTGAGCATAAAAGACTTGCCTG...TTTAGTCTTCGCTAGCCAGACTGTGCTCAAAATGATGTTTTTATTGTAGTAGGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000099690.4 |
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| CDS-3UTR CCA 90 bp | AGCACAGTCTGGCTAGCGAAGACTAAAAGAAACAAGGCTTCTAAAAATGTCAGATTATCCACAGTGAGTTaGAAAGAATCCAAGTTGGAT | + |
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Preference number: 4 (lower is better) Translates to: STVWLAKTKRNKASKNVRLSTVS*KESKLD Trigger: ATCCAACTTGGATTCTTTCCAACTCACTGTGGATAA...TCTGACATTTTTAGAAGCCTTGTTTCTTTTAGTCTTCGCTAGCCAGACTGTGCT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000099690.4 |
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| CDS-3UTR CAA 90 bp | TCCTCCTGTCTCCTGGCCACGAGGTTACTTTCAGGGGCCCCTGAGCAAGTGACAGTATCACTATTAGCCTaGGCAGCCTGGCTGGAGCCT | + |
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Preference number: 5 (lower is better) Translates to: SSCLLATRLLSGAPEQVTVSLLA*AAWLEP Trigger: AGGCTCCAGCCAGGCTGCCAAGGCTAATAGTGATAC...TGTCACTTGCTCAGGGGCCCCTGAAAGTAACCTCGTGGCCAGGAGACAGGAGGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000099690.4 |
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| CDS-3UTR CAA 90 bp | CTGGAGCCACTGGGTGGGGGCAGCAGTCTATGTCCTGGCTGCCTGCTCCTGCTGTACTTTTCATGCTTTTaGTGTTCAGCAAGCACGTGG | + |
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Preference number: 5 (lower is better) Translates to: LEPLGGGSSLCPGCLLLLYFSCF*CSASTW Trigger: CCACGTGCTTGCTGAACACAAAAAGCATGAAAAGTA...CAGCAGGAGCAGGCAGCCAGGACATAGACTGCTGCCCCCACCCAGTGGCTCCAG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000099690.4 ENSMUST00000132722.2 |
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| CDS GCA 90 bp | GAGACAGTAGGTAGCCCATCTTTTTCCGCTTCCTGGAGGTTTGTGTaGATTGCTGATCTCCCGGCGGGACGCACTGCATCTGCTGGCTTA | + |
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Preference number: 5 (lower is better) Translates to: ETVGSPSFSASWRFV*IADLPAGRTASAGL Trigger: TAAGCCAGCAGATGCAGTGCGTCCCGCCGGGAGATCAGCAATGCACACAAACCTCCAGGAAGCGGAAAAAGATGGGCTACCTACTGTCTC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000099690.4 ENSMUST00000133562.2 ENSMUST00000143033.8 |
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| CDS CCA 90 bp | CTTCAGCTGATCCCTGAGTCTGGGGTGGGTGACTTTGAAGTGACTTaGAGTCTGGGTATCACTATTAGCCTTGGCAGCCTGGCTGGAGCC | + |
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Preference number: 5 (lower is better) Translates to: LQLIPESGVGDFEVT*SLGITISLGSLAGA Trigger: GGCTCCAGCCAGGCTGCCAAGGCTAATAGTGATACCCAGACTCCAAGTCACTTCAAAGTCACCCACCCCAGACTCAGGGATCAGCTGAAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000099690.4 ENSMUST00000133562.2 ENSMUST00000143033.8 |
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| CDS-3UTR CAA 90 bp | GGAATCCGGGGAACAGCCTTTACCTCTCCAGGGTTCCTTAGGCCTTCTCCCTCCTTGAAGCCCTTCTTTTaGGAGGACTTCTTCTTCAGC | + |
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Preference number: 5 (lower is better) Translates to: GIRGTAFTSPGFLRPSPSLKPFF*EDFFFS Trigger: GCTGAAGAAGAAGTCCTCCAAAAAGAAGGGCTTCAA...GGAGGGAGAAGGCCTAAGGAACCCTGGAGAGGTAAAGGCTGTTCCCCGGATTCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000099690.4 |
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| CDS-3UTR CAA 90 bp | CTGGCCACGAGGTTACTTTCAGGGGCCCCTGAGCAAGTGACAGCAGGCTCTCTGCTTATCCACAGTGAGTaGGAAAGAATCCAAGTTGGA | + |
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Preference number: 5 (lower is better) Translates to: LATRLLSGAPEQVTAGSLLIHSE*ERIQVG Trigger: TCCAACTTGGATTCTTTCCAACTCACTGTGGATAAG...CAGAGAGCCTGCTGTCACTTGCTCAGGGGCCCCTGAAAGTAACCTCGTGGCCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000099690.4 |
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| CDS-3UTR CAA 90 bp | GGAATCCGGGGAACAGCCTTTACCTCTCCAGGGTTCCTTAGGCCTTCTCCCTCCTACTTTTCATGCTTTTaGTGTTCAGCAAGCACGTGG | + |
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Preference number: 5 (lower is better) Translates to: GIRGTAFTSPGFLRPSPSYFSCF*CSASTW Trigger: CCACGTGCTTGCTGAACACAAAAAGCATGAAAAGTA...GGAGGGAGAAGGCCTAAGGAACCCTGGAGAGGTAAAGGCTGTTCCCCGGATTCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000099690.4 ENSMUST00000132722.2 |
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| CDS CCA 90 bp | CGGATGCCAGACATGCCGAAATCCTTACTAGTGCCCCAGATCATATaGGTCATGTTAGGGTCAGGCAAGTCTTTTATGCTCAGAACGCTG | + |
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Preference number: 5 (lower is better) Translates to: RMPDMPKSLLVPQII*VMLGSGKSFMLRTL Trigger: CAGCGTTCTGAGCATAAAAGACTTGCCTGACCCTAACATGACCCATATGATCTGGGGCACTAGTAAGGATTTCGGCATGTCTGGCATCCG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000099690.4 |
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| CDS-3UTR CAA 90 bp | GACTCGATGAGTGAGGTCAGACAGCACGGTGACTCCAATTCCTCCTCCTGTCTCTTCTCCTGCACAAATTaGAAGCCCTTCTTTTTGGAG | + |
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Preference number: 5 (lower is better) Translates to: DSMSEVRQHGDSNSSSCLFSCTN*KPFFLE Trigger: CTCCAAAAAGAAGGGCTTCAAATTTGTGCAGGAGAA...GAGACAGGAGGAGGAATTGGAGTCACCGTGCTGTCTGACCTCACTCATCGAGTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000099690.4 |
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| CDS-3UTR CAA 90 bp | GACTCGATGAGTGAGGTCAGACAGCACGGTGACTCCAATTCCTCCTCCTGTCTCCAAGGGAGAGGTACTTaGAACTTCAGTTTCTTTACA | + |
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Preference number: 5 (lower is better) Translates to: DSMSEVRQHGDSNSSSCLQGRGT*NFSFFT Trigger: TGTAAAGAAACTGAAGTTCAAAGTACCTCTCCCTTG...GAGACAGGAGGAGGAATTGGAGTCACCGTGCTGTCTGACCTCACTCATCGAGTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099690.4 |
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| CDS-3UTR CAA 90 bp | AAAGAAACAAGGCTTCTAAAAATGTCAGACACTCAGCGTAGGGGACTCGATGAGTTACTGATCCACTCTTaGTCCTGGAGCAGTCGGCAC | + |
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Preference number: 5 (lower is better) Translates to: KETRLLKMSDTQRRGLDELLIHS*SWSSRH Trigger: GTGCCGACTGCTCCAGGACAAAGAGTGGATCAGTAA...CTCATCGAGTCCCCTACGCTGAGTGTCTGACATTTTTAGAAGCCTTGTTTCTTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000099690.4 |
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| CDS-3UTR CAA 90 bp | AGCACAGTCTGGCTAGCGAAGACTAAAAGAAACAAGGCTTCTAAAAATGTCAGATTCCCGAAGGAAGGGTaGTCCTTTCCAGTCGGAGTA | + |
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Preference number: 5 (lower is better) Translates to: STVWLAKTKRNKASKNVRFPKEG*SFPVGV Trigger: TACTCCGACTGGAAAGGACAACCCTTCCTTCGGGAA...TCTGACATTTTTAGAAGCCTTGTTTCTTTTAGTCTTCGCTAGCCAGACTGTGCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000099690.4 |
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| CDS-3UTR CAA 90 bp | AGCACAGTCTGGCTAGCGAAGACTAAAAGAAACAAGGCTTCTAAAAATGTCAGAAGGATAGCTTTCAAGTaGATCCAGACAAAGAGGCCA | + |
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Preference number: 5 (lower is better) Translates to: STVWLAKTKRNKASKNVRRIAFK*IQTKRP Trigger: TGGCCTCTTTGTCTGGATCAACTTGAAAGCTATCCT...TCTGACATTTTTAGAAGCCTTGTTTCTTTTAGTCTTCGCTAGCCAGACTGTGCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000132722.2 |
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| CDS CAA 72 bp | GCCCATCTTTTTCCGCTTCCTGGAGGTTTGTGTGCATaGCTGATCTCCCGGCGGGACGCACTGCATCTGCTG | + |
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Preference number: 6 (lower is better) Translates to: AHLFPLPGGLCA*LISRRDALHLL Trigger: CAGCAGATGCAGTGCGTCCCGCCGGGAGATCAGCAATGCACACAAACCTCCAGGAAGCGGAAAAAGATGGGC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000099690.4 ENSMUST00000133562.2 ENSMUST00000143033.8 |
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| CDS CAA 72 bp | GGTCAAGAAGCTAGCCAGCTCTTCCCGAAGGAAGGGTaGTCCTTTCCAGTCGGAGTACTGCAGCTGGGCCTC | + |
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Preference number: 6 (lower is better) Translates to: GQEASQLFPKEG*SFPVGVLQLGL Trigger: GAGGCCCAGCTGCAGTACTCCGACTGGAAAGGACAACCCTTCCTTCGGGAAGAGCTGGCTAGCTTCTTGACC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099690.4 |
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| CDS TCA 72 bp | ACCCAGACTAGGCCTGGATTGGCCAGTCTGCCAAGGTaGCAGGGTCTGGTGCCCAACTTTGATGCCACATCT | + |
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Preference number: 6 (lower is better) Translates to: TQTRPGLASLPR*QGLVPNFDATS Trigger: AGATGTGGCATCAAAGTTGGGCACCAGACCCTGTCACCTTGGCAGACTGGCCAATCCAGGCCTAGTCTGGGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099690.4 |
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| CDS CAA 72 bp | CCAGTCTGCCAAGGTGACAGGGTCTGGTGCCCAACTTaGATGCCACATCTAGAGTCCAAGCAAGGGAGAGGT | + |
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Preference number: 6 (lower is better) Translates to: PVCQGDRVWCPT*MPHLESKQGRG Trigger: ACCTCTCCCTTGCTTGGACTCTAGATGTGGCATCAAAGTTGGGCACCAGACCCTGTCACCTTGGCAGACTGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099690.4 |
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| CDS CCA 72 bp | TCTGAGACAGTAGGTAGCCCATCTTTTTCCGCTTCCTaGAGGTTTGTGTGCATTGCTGATCTCCCGGCGGGA | + |
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Preference number: 6 (lower is better) Translates to: SETVGSPSFSAS*RFVCIADLPAG Trigger: TCCCGCCGGGAGATCAGCAATGCACACAAACCTCCAGGAAGCGGAAAAAGATGGGCTACCTACTGTCTCAGA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000099690.4 ENSMUST00000133562.2 ENSMUST00000143033.8 |
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| CDS CAA 90 bp | CTGGATTGGCCAGTCTGCCAAGGTGACAGGGTCTGGTGCCCAACTTaGATGCCACATCTAGAGTCCAAGCAAGGGAGAGGTACTTTGAAC | + |
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Preference number: 6 (lower is better) Translates to: LDWPVCQGDRVWCPT*MPHLESKQGRGTLN Trigger: GTTCAAAGTACCTCTCCCTTGCTTGGACTCTAGATGTGGCATCAAAGTTGGGCACCAGACCCTGTCACCTTGGCAGACTGGCCAATCCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099690.4 |
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| CDS CCA 72 bp | ATCCCTGAGTCTGGGGTGGGTGACTTTGAAGTGACTTaGAGTCTGGGTATCACTATTAGCCTTGGCAGCCTG | + |
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Preference number: 6 (lower is better) Translates to: IPESGVGDFEVT*SLGITISLGSL Trigger: CAGGCTGCCAAGGCTAATAGTGATACCCAGACTCCAAGTCACTTCAAAGTCACCCACCCCAGACTCAGGGAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000099690.4 ENSMUST00000133562.2 ENSMUST00000143033.8 |
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| CDS CCA 72 bp | CTTGGAGTCTGGGTATCACTATTAGCCTTGGCAGCCTaGCTGGAGCCTTCCAGATCCTCCAGGTTGGTTAAA | + |
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Preference number: 6 (lower is better) Translates to: LGVWVSLLALAA*LEPSRSSRLVK Trigger: TTTAACCAACCTGGAGGATCTGGAAGGCTCCAGCCAGGCTGCCAAGGCTAATAGTGATACCCAGACTCCAAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000133562.2 ENSMUST00000143033.8 |
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| CDS CAA 90 bp | AGGGCAAGCTTGAGCTTATCCACAGTGAGTTGGAAAGAATCCAAGTaGGATCTGGGGACCTGGCTCTCCAAGTGGACAGGAATAAGCTCG | + |
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Preference number: 6 (lower is better) Translates to: RASLSLSTVSWKESK*DLGTWLSKWTGISS Trigger: CGAGCTTATTCCTGTCCACTTGGAGAGCCAGGTCCCCAGATCCAACTTGGATTCTTTCCAACTCACTGTGGATAAGCTCAAGCTTGCCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099690.4 |
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| CDS CAA 72 bp | CTGAGTCAGGGCAAGCTTGAGCTTATCCACAGTGAGTaGGAAAGAATCCAAGTTGGATCTGGGGACCTGGCT | + |
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Preference number: 6 (lower is better) Translates to: LSQGKLELIHSE*ERIQVGSGDLA Trigger: AGCCAGGTCCCCAGATCCAACTTGGATTCTTTCCAACTCACTGTGGATAAGCTCAAGCTTGCCCTGACTCAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099690.4 |
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| CDS TCA 72 bp | TGCAGCTGGGCCTCATCAAGTAAGTTCATGTCACTCTaGGTCAACCTCGCTGTTATCAGGTCAAGGCAAAGC | + |
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Preference number: 6 (lower is better) Translates to: CSWASSSKFMSL*VNLAVIRSRQS Trigger: GCTTTGCCTTGACCTGATAACAGCGAGGTTGACTCAGAGTGACATGAACTTACTTGATGAGGCCCAGCTGCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099690.4 |
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| CDS CCA 72 bp | TGCCAGAGACCCCATGGTGGTAGCCAAAAGCTTTCATaGCAGAGGCTACCTCCTTGTTGTGTGTATAGAGAA | + |
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Preference number: 6 (lower is better) Translates to: CQRPHGGSQKLS*QRLPPCCVYRE Trigger: TTCTCTATACACACAACAAGGAGGTAGCCTCTGCCATGAAAGCTTTTGGCTACCACCATGGGGTCTCTGGCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000099690.4 |
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| CDS CCA 72 bp | TTTTGTGTTCAGCAAGCACGTGGCAGAACCGATCCATaGCCACTTGTAGGTGAAGGTGGGTTTCTGCAAAGA | + |
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Preference number: 6 (lower is better) Translates to: FCVQQARGRTDP*PLVGEGGFLQR Trigger: TCTTTGCAGAAACCCACCTTCACCTACAAGTGGCCATGGATCGGTTCTGCCACGTGCTTGCTGAACACAAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000099690.4 ENSMUST00000132722.2 |
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| CDS CAA 72 bp | TTGAGCTTATCCACAGTGAGTTGGAAAGAATCCAAGTaGGATCTGGGGACCTGGCTCTCCAAGTGGACAGGA | + |
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Preference number: 6 (lower is better) Translates to: LSLSTVSWKESK*DLGTWLSKWTG Trigger: TCCTGTCCACTTGGAGAGCCAGGTCCCCAGATCCAACTTGGATTCTTTCCAACTCACTGTGGATAAGCTCAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099690.4 |
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| CDS TCA 72 bp | CTAGATAATAACAGCTTCTTGTCCCGGAAGCGCTGGTaGAGGATCTGCTCTTGGTCAAATGTGCATGGACTC | + |
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Preference number: 6 (lower is better) Translates to: LDNNSFLSRKRW*RICSWSNVHGL Trigger: GAGTCCATGCACATTTGACCAAGAGCAGATCCTTCACCAGCGCTTCCGGGACAAGAAGCTGTTATTATCTAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099690.4 |
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| CDS TCA 72 bp | TTAGGGTCAGGCAAGTCTTTTATGCTCAGAACGCTGTaGAATGTGACAGACGGCTCAAACACTGACAGCATG | + |
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Preference number: 6 (lower is better) Translates to: LGSGKSFMLRTL*NVTDGSNTDSM Trigger: CATGCTGTCAGTGTTTGAGCCGTCTGTCACATTTCACAGCGTTCTGAGCATAAAAGACTTGCCTGACCCTAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099690.4 |
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| CDS CCA 72 bp | GACATGCCGAAATCCTTACTAGTGCCCCAGATCATATaGGTCATGTTAGGGTCAGGCAAGTCTTTTATGCTC | + |
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Preference number: 6 (lower is better) Translates to: DMPKSLLVPQII*VMLGSGKSFML Trigger: GAGCATAAAAGACTTGCCTGACCCTAACATGACCCATATGATCTGGGGCACTAGTAAGGATTTCGGCATGTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000099690.4 |
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| CDS TCA 72 bp | CTAGATAATAACAGCTTCTTGTCCCGGAAGCGCTGGTaGAGGATAGCTTTCAAGTTGATCCAGACAAAGAGG | + |
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Preference number: 6 (lower is better) Translates to: LDNNSFLSRKRW*RIAFKLIQTKR Trigger: CCTCTTTGTCTGGATCAACTTGAAAGCTATCCTTCACCAGCGCTTCCGGGACAAGAAGCTGTTATTATCTAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000132722.2 |
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| CDS CAA 90 bp | CCAACTTTGATGCCACATCTAGAGTCCAAGCAAGGGAGAGGTACTTaGAACTTCAGTTTCTTTACAGTGTTAGACCATAAGAAGTTGACC | + |
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Preference number: 6 (lower is better) Translates to: PTLMPHLESKQGRGT*NFSFFTVLDHKKLT Trigger: GGTCAACTTCTTATGGTCTAACACTGTAAAGAAACTGAAGTTCAAAGTACCTCTCCCTTGCTTGGACTCTAGATGTGGCATCAAAGTTGG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099690.4 |
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| CDS TCA 72 bp | CATGCTGAAACTTCAACATCTTCTCCTGCACAAATTTaGAGCCCTTCTTTTTGGAGGACTTCTTCTTCAGCT | + |
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Preference number: 6 (lower is better) Translates to: HAETSTSSPAQI*SPSFWRTSSSA Trigger: AGCTGAAGAAGAAGTCCTCCAAAAAGAAGGGCTTCAAATTTGTGCAGGAGAAGATGTTGAAGTTTCAGCATG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000099690.4 ENSMUST00000133562.2 ENSMUST00000143033.8 |
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