RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ACBD5 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000026781

Ensembl transcript IDs: ENSMUST00000028121.15, ENSMUST00000114523.10, ENSMUST00000114526.9, ENSMUST00000114529.10, ENSMUST00000144088.2, ENSMUST00000155602.4, ENSMUST00000226571.2, ENSMUST00000227663.2, ENSMUST00000227809.2, ENSMUST00000228050.2

Found 356 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GGCAGGAACCTGGAGGCAGGAGCAATAGAGACCATGAAGGGGTGCTaGTTACTGGCTTGCTTCTCCTGGCTTGCTCAGCCTGCTTTCTTA +
Preference number: 1 (lower is better)
Translates to: GRNLEAGAIETMKGC*LLACFSWLAQPAFL
Trigger: TAAGAAAGCAGGCTGAGCAAGCCAGGAGAAGCAAGCCAGTAAGCAGCACCCCTTCATGGTCTCTATTGCTCCTGCCTCCAGGTTCCTGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228050.2
3UTR GCA 90 bp AACCTGTGGAATCCTGTGCTTGGGATTTCGGACAGTTGTATCTCCTaGCTGCCATTTAAGATTACTGTATATGAACCACTGTTGCTTCTT +
Preference number: 1 (lower is better)
Translates to: NLWNPVLGISDSCIS*LPFKITVYEPLLLL
Trigger: AAGAAGCAACAGTGGTTCATATACAGTAATCTTAAATGGCAGGCAGGAGATACAACTGTCCGAAATCCCAAGCACAGGATTCCACAGGTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227663.2
ENSMUST00000228050.2
3UTR GCA 90 bp TGTCAACTTGAGATCAAAATAACCAACTTGAATAGGAAATTAGTTTaGTATCACATTTCCAGCTCATCACCTAATATTCTGCCACCAGAT +
Preference number: 1 (lower is better)
Translates to: CQLEIKITNLNRKLV*YHISSSSPNILPPD
Trigger: ATCTGGTGGCAGAATATTAGGTGATGAGCTGGAAATGTGATAGCAAACTAATTTCCTATTCAAGTTGGTTATTTTGATCTCAAGTTGACA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000227663.2
ENSMUST00000228050.2
3UTR-3UTR CCA 90 bp GAACCTGGAGGCAGGAGCAATAGAGACCATGAAGGGGTGCTGCTTACTGGCTTGGGTGGTACAGGCCTGTaGTCCCAGAAGCTGAAAAGA +
Preference number: 2 (lower is better)
Translates to: EPGGRSNRDHEGVLLTGLGGTGL*SQKLKR
Trigger: TCTTTTCAGCTTCTGGGACCACAGGCCTGTACCACC...CAAGCCAGTAAGCAGCACCCCTTCATGGTCTCTATTGCTCCTGCCTCCAGGTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000228050.2
3UTR-3UTR GCA 90 bp TCTTATAGAAGCCAGGACCACCAGCCCAGGGGAGGCACCACCCACAACAGCAGCACCACTGTTGCTTCTTaGTTTAGCTTTGTACACAGT +
Preference number: 2 (lower is better)
Translates to: SYRSQDHQPRGGTTHNSSTTVAS*FSFVHS
Trigger: ACTGTGTACAAAGCTAAAGCAAGAAGCAACAGTGGT...GCTGCTGTTGTGGGTGGTGCCTCCCCTGGGCTGGTGGTCCTGGCTTCTATAAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000227663.2
ENSMUST00000228050.2
3UTR-3UTR TCA 90 bp TCTTATAGAAGCCAGGACCACCAGCCCAGGGGAGGCACCACCCACAACAGCAGCTCTAGCCTGTCAACTTaGGATCAAAATAACCAACTT +
Preference number: 2 (lower is better)
Translates to: SYRSQDHQPRGGTTHNSSSSLST*DQNNQL
Trigger: AAGTTGGTTATTTTGATCTCAAGTTGACAGGCTAGA...GCTGCTGTTGTGGGTGGTGCCTCCCCTGGGCTGGTGGTCCTGGCTTCTATAAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000227663.2
ENSMUST00000228050.2
3UTR-3UTR TCA 90 bp CAGGTAGTCAAGGTCATCTTCAGCTACATAGAGAATTGGAGGCTGGTAGGAGCTAGGACGATGATTTTCTaGGTTCCCTTGAGCAAGCCG +
Preference number: 2 (lower is better)
Translates to: QVVKVIFSYIENWRLVGARTMIF*VPLSKP
Trigger: CGGCTTGCTCAAGGGAACTCAGAAAATCATCGTCCT...AGCTCCTACCAGCCTCCAATTCTCTATGTAGCTGAAGATGACCTTGACTACCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
3UTR-3UTR CCA 90 bp TTGCTTCTCCTGGCTTGCTCAGCCTGCTTTCTTATAGAAGCCAGGACCACCAGCCACATAAACATTGTTTaGGCTGAAGGCCATTTGAAA +
Preference number: 2 (lower is better)
Translates to: LLLLACSACFLIEARTTSHINIV*AEGHLK
Trigger: TTTCAAATGGCCTTCAGCCCAAACAATGTTTATGTG...GCTGGTGGTCCTGGCTTCTATAAGAAAGCAGGCTGAGCAAGCCAGGAGAAGCAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228050.2
3UTR-3UTR TCA 90 bp CCACCCCCAACACGCCTCTTTCACATAAACATTGTTTGGGCTGAAGGCCATTTGGGAGTTAGTTACACTTaGCTACTTGCAATCAATCAC +
Preference number: 2 (lower is better)
Translates to: PPPTRLFHINIVWAEGHLGVSYT*LLAINH
Trigger: GTGATTGATTGCAAGTAGTCAAGTGTAACTAACTCC...CAAATGGCCTTCAGCCCAAACAATGTTTATGTGAAAGAGGCGTGTTGGGGGTGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000227663.2
ENSMUST00000228050.2
3UTR-3UTR TCA 90 bp ATCTCCTGCCTGCCATTTAAGATTACTGTATATGAACCACTGTTGCTTCTTGCTAGGACGATGATTTTCTaGGTTCCCTTGAGCAAGCCG +
Preference number: 2 (lower is better)
Translates to: ISCLPFKITVYEPLLLLARTMIF*VPLSKP
Trigger: CGGCTTGCTCAAGGGAACTCAGAAAATCATCGTCCT...AGCAAGAAGCAACAGTGGTTCATATACAGTAATCTTAAATGGCAGGCAGGAGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000227663.2
ENSMUST00000228050.2
3UTR-3UTR TCA 90 bp AACTCAGGTAGTCAAGGTCATCTTCAGCTACATAGAGAATTGGAGGCTGGTAGGGCCGTGTCTAGAGTTTaGATACACTTTTACACCTAC +
Preference number: 2 (lower is better)
Translates to: NSGSQGHLQLHRELEAGRAVSRV*IHFYTY
Trigger: GTAGGTGTAAAAGTGTATTCAAACTCTAGACACGGC...CCTACCAGCCTCCAATTCTCTATGTAGCTGAAGATGACCTTGACTACCTGAGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
3UTR-3UTR TCA 90 bp CAGGTAGTCAAGGTCATCTTCAGCTACATAGAGAATTGGAGGCTGGTAGGAGCTACTTCTGATACCTTGTaGAGTATACCCCAAAGGAAA +
Preference number: 2 (lower is better)
Translates to: QVVKVIFSYIENWRLVGATSDTL*SIPQRK
Trigger: TTTCCTTTGGGGTATACTTCACAAGGTATCAGAAGT...AGCTCCTACCAGCCTCCAATTCTCTATGTAGCTGAAGATGACCTTGACTACCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
3UTR-3UTR TCA 90 bp CCAGCTCATCACCTAATATTCTGCCACCAGATAAAGCACTGTTGTGTAATGGTATGTGGTCCCAGAAGCTaGAAAGAAGTAGAGACAGGA +
Preference number: 2 (lower is better)
Translates to: PAHHLIFCHQIKHCCVMVCGPRS*KEVETG
Trigger: TCCTGTCTCTACTTCTTTTCAGCTTCTGGGACCACA...TACCATTACACAACAGTGCTTTATCTGGTGGCAGAATATTAGGTGATGAGCTGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227663.2
ENSMUST00000228050.2
3UTR-3UTR CCA 90 bp TCCAGCTCATCACCTAATATTCTGCCACCAGATAAAGCACTGTTGTGTAATGGTAGCTACATAGAGAATTaGAGGCTGGTAGGAGCTACC +
Preference number: 2 (lower is better)
Translates to: SSSSPNILPPDKALLCNGSYIEN*RLVGAT
Trigger: GGTAGCTCCTACCAGCCTCCAATTCTCTATGTAGCT...ACCATTACACAACAGTGCTTTATCTGGTGGCAGAATATTAGGTGATGAGCTGGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227663.2
ENSMUST00000228050.2
3UTR-3UTR TCA 90 bp AAGCAAAAGCCAGTAGATCATTTTAGGCATATCAACCAAGTTGTGATACACAAGTGTGGTCCCAGAAGCTaGAAAGAAGTAGAGACAGGA +
Preference number: 2 (lower is better)
Translates to: KQKPVDHFRHINQVVIHKCGPRS*KEVETG
Trigger: TCCTGTCTCTACTTCTTTTCAGCTTCTGGGACCACA...CTTGTGTATCACAACTTGGTTGATATGCCTAAAATGATCTACTGGCTTTTGCTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
3UTR-3UTR GCA 90 bp CCAGCTCATCACCTAATATTCTGCCACCAGATAAAGCACTGTTGTGTAATGGTAATGACCTTATCCTTTTaGATGTTACCCGGAATGGAA +
Preference number: 2 (lower is better)
Translates to: PAHHLIFCHQIKHCCVMVMTLSF*MLPGME
Trigger: TTCCATTCCGGGTAACATGCAAAAGGATAAGGTCAT...TACCATTACACAACAGTGCTTTATCTGGTGGCAGAATATTAGGTGATGAGCTGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000227663.2
ENSMUST00000228050.2
3UTR-3UTR GCA 90 bp TCCAGCTCATCACCTAATATTCTGCCACCAGATAAAGCACTGTTGTGTAATGGTGTTGTATCTCCTGCCTaGCATTTAAGATTACTGTAT +
Preference number: 2 (lower is better)
Translates to: SSSSPNILPPDKALLCNGVVSPA*HLRLLY
Trigger: ATACAGTAATCTTAAATGGCAGGCAGGAGATACAAC...ACCATTACACAACAGTGCTTTATCTGGTGGCAGAATATTAGGTGATGAGCTGGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227663.2
ENSMUST00000228050.2
3UTR-3UTR GCA 90 bp CCAGCTCATCACCTAATATTCTGCCACCAGATAAAGCACTGTTGTGTAATGGTATTACACTTGACTACTTaGAATCAATCACACTGGTTA +
Preference number: 2 (lower is better)
Translates to: PAHHLIFCHQIKHCCVMVLHLTT*NQSHWL
Trigger: TAACCAGTGTGATTGATTGCAAGTAGTCAAGTGTAA...TACCATTACACAACAGTGCTTTATCTGGTGGCAGAATATTAGGTGATGAGCTGG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227663.2
ENSMUST00000228050.2
3UTR CAA 90 bp TGTATCTCCTGCCTGCCATTTAAGATTACTGTATATGAACCACTGTaGCTTCTTGCTTTAGCTTTGTACACAGTCAATACAGTTAGCATT +
Preference number: 2 (lower is better)
Translates to: CISCLPFKITVYEPL*LLALALYTVNTVSI
Trigger: AATGCTAACTGTATTGACTGTGTACAAAGCTAAAGCAAGAAGCAACAGTGGTTCATATACAGTAATCTTAAATGGCAGGCAGGAGATACA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227663.2
ENSMUST00000228050.2
3UTR-3UTR TCA 90 bp AAGCAAAAGCCAGTAGATCATTTTAGGCATATCAACCAAGTTGTGATACACAAGACTTCTGATACCTTGTaGAGTATACCCCAAAGGAAA +
Preference number: 2 (lower is better)
Translates to: KQKPVDHFRHINQVVIHKTSDTL*SIPQRK
Trigger: TTTCCTTTGGGGTATACTTCACAAGGTATCAGAAGT...CTTGTGTATCACAACTTGGTTGATATGCCTAAAATGATCTACTGGCTTTTGCTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
3UTR CAA 90 bp TTTCAGGTAACTCTAGCCTGTCAACTTGAGATCAAAATAACCAACTaGAATAGGAAATTAGTTTGCTATCACATTTCCAGCTCATCACCT +
Preference number: 2 (lower is better)
Translates to: FQVTLACQLEIKITN*NRKLVCYHISSSSP
Trigger: AGGTGATGAGCTGGAAATGTGATAGCAAACTAATTTCCTATTCAAGTTGGTTATTTTGATCTCAAGTTGACAGGCTAGAGTTACCTGAAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000227663.2
ENSMUST00000228050.2
3UTR-3UTR CAA 90 bp TCTTATAGAAGCCAGGACCACCAGCCCAGGGGAGGCACCACCCACAACAGCAGCCAGCTACATAGAGAATaGGAGGCTGGTAGGAGCTAC +
Preference number: 3 (lower is better)
Translates to: SYRSQDHQPRGGTTHNSSQLHRE*EAGRSY
Trigger: GTAGCTCCTACCAGCCTCCAATTCTCTATGTAGCTG...GCTGCTGTTGTGGGTGGTGCCTCCCCTGGGCTGGTGGTCCTGGCTTCTATAAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000227663.2
ENSMUST00000228050.2
3UTR GCA 72 bp CCCAGTCTCCTGGAGAGGATTCTTCCGTCCGGTTCCTaGCACGTAGCTGACAGTTCAGTGACTGATGCAAAA +
Preference number: 3 (lower is better)
Translates to: PSLLERILPSGS*HVADSSVTDAK
Trigger: TTTTGCATCAGTCACTGAACTGTCAGCTACGTGGCAGGAACCGGACGGAAGAATCCTCTCCAGGAGACTGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
3UTR-3UTR CAA 90 bp TCTTATAGAAGCCAGGACCACCAGCCCAGGGGAGGCACCACCCACAACAGCAGCCCAGATAAAGCACTGTaGTGTAATGGTATTTACTGG +
Preference number: 3 (lower is better)
Translates to: SYRSQDHQPRGGTTHNSSPDKAL*CNGIYW
Trigger: CCAGTAAATACCATTACACAACAGTGCTTTATCTGG...GCTGCTGTTGTGGGTGGTGCCTCCCCTGGGCTGGTGGTCCTGGCTTCTATAAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000227663.2
ENSMUST00000228050.2
3UTR CCA 72 bp ATGTTACCCGGAATGGAACCTGTGGAATCCTGTGCTTaGGATTTCGGACAGTTGTATCTCCTGCCTGCCATT +
Preference number: 3 (lower is better)
Translates to: MLPGMEPVESCA*DFGQLYLLPAI
Trigger: AATGGCAGGCAGGAGATACAACTGTCCGAAATCCCAAGCACAGGATTCCACAGGTTCCATTCCGGGTAACAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227663.2
ENSMUST00000228050.2
3UTR-3UTR CAA 90 bp TTGCTTCTCCTGGCTTGCTCAGCCTGCTTTCTTATAGAAGCCAGGACCACCAGCATAAGATACAAATGGTaGCCCTTAGGAGTTAGTTAC +
Preference number: 3 (lower is better)
Translates to: LLLLACSACFLIEARTTSIRYKW*PLGVSY
Trigger: GTAACTAACTCCTAAGGGCAACCATTTGTATCTTAT...GCTGGTGGTCCTGGCTTCTATAAGAAAGCAGGCTGAGCAAGCCAGGAGAAGCAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228050.2
3UTR-3UTR CAA 90 bp AACTCAGGTAGTCAAGGTCATCTTCAGCTACATAGAGAATTGGAGGCTGGTAGGTTACTGAGCGCAGGTTaGAGAAAGTACACAGGAAGA +
Preference number: 3 (lower is better)
Translates to: NSGSQGHLQLHRELEAGRLLSAG*RKYTGR
Trigger: TCTTCCTGTGTACTTTCTCAAACCTGCGCTCAGTAA...CCTACCAGCCTCCAATTCTCTATGTAGCTGAAGATGACCTTGACTACCTGAGTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
3UTR-3UTR CAA 90 bp TCCAGCTCATCACCTAATATTCTGCCACCAGATAAAGCACTGTTGTGTAATGGTCAGCTACATAGAGAATaGGAGGCTGGTAGGAGCTAC +
Preference number: 3 (lower is better)
Translates to: SSSSPNILPPDKALLCNGQLHRE*EAGRSY
Trigger: GTAGCTCCTACCAGCCTCCAATTCTCTATGTAGCTG...ACCATTACACAACAGTGCTTTATCTGGTGGCAGAATATTAGGTGATGAGCTGGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227663.2
ENSMUST00000228050.2
3UTR-3UTR CAA 90 bp CCACCCCCAACACGCCTCTTTCACATAAACATTGTTTGGGCTGAAGGCCATTTGGTATATGAACCACTGTaGCTTCTTGCTTTAGCTTTG +
Preference number: 3 (lower is better)
Translates to: PPPTRLFHINIVWAEGHLVYEPL*LLALAL
Trigger: CAAAGCTAAAGCAAGAAGCAACAGTGGTTCATATAC...CAAATGGCCTTCAGCCCAAACAATGTTTATGTGAAAGAGGCGTGTTGGGGGTGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000227663.2
ENSMUST00000228050.2
3UTR CCA 72 bp CAGGTAGTCAAGGTCATCTTCAGCTACATAGAGAATTaGAGGCTGGTAGGAGCTACCAAAACTCTGTCTCAA +
Preference number: 3 (lower is better)
Translates to: QVVKVIFSYIEN*RLVGATKTLSQ
Trigger: TTGAGACAGAGTTTTGGTAGCTCCTACCAGCCTCCAATTCTCTATGTAGCTGAAGATGACCTTGACTACCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
3UTR TCA 72 bp CCCAACACGCCTCTTTCACATAAACATTGTTTGGGCTaGAGGCCATTTGAAATAGCACACACTAGGAAATCA +
Preference number: 3 (lower is better)
Translates to: PNTPLSHKHCLG*RPFEIAHTRKS
Trigger: TGATTTCCTAGTGTGTGCTATTTCAAATGGCCTTCAGCCCAAACAATGTTTATGTGAAAGAGGCGTGTTGGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227663.2
ENSMUST00000228050.2
3UTR GCA 72 bp AATCCTGTGCTTGGGATTTCGGACAGTTGTATCTCCTaGCTGCCATTTAAGATTACTGTATATGAACCACTG +
Preference number: 3 (lower is better)
Translates to: NPVLGISDSCIS*LPFKITVYEPL
Trigger: CAGTGGTTCATATACAGTAATCTTAAATGGCAGGCAGGAGATACAACTGTCCGAAATCCCAAGCACAGGATT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227663.2
ENSMUST00000228050.2
3UTR GCA 72 bp TTCTCTTTTGTCCTTCGTAGGCTGAGGCAAGAGGATTaGTTCAAGTCTAAAGCTAGTCTAAGCTACAGTAAA +
Preference number: 3 (lower is better)
Translates to: FSFVLRRLRQED*FKSKASLSYSK
Trigger: TTTACTGTAGCTTAGACTAGCTTTAGACTTGAAGCAATCCTCTTGCCTCAGCCTACGAAGGACAAAAGAGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000227663.2
ENSMUST00000228050.2
3UTR GCA 72 bp TATATGGGGAGGTATGAATTCTCCTTCACTGAAGACTaGTCTAGTATGAGCCAAGAGACAGCACTTTATTCT +
Preference number: 3 (lower is better)
Translates to: YMGRYEFSFTED*SSMSQETALYS
Trigger: AGAATAAAGTGCTGTCTCTTGGCTCATACTAGAGCAGTCTTCAGTGAAGGAGAATTCATACCTCCCCATATA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000227663.2
ENSMUST00000228050.2
3UTR-3UTR CAA 90 bp AAGCAAAAGCCAGTAGATCATTTTAGGCATATCAACCAAGTTGTGATACACAAGTTACTGAGCGCAGGTTaGAGAAAGTACACAGGAAGA +
Preference number: 3 (lower is better)
Translates to: KQKPVDHFRHINQVVIHKLLSAG*RKYTGR
Trigger: TCTTCCTGTGTACTTTCTCAAACCTGCGCTCAGTAA...CTTGTGTATCACAACTTGGTTGATATGCCTAAAATGATCTACTGGCTTTTGCTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
3UTR GCA 72 bp AATATGCCTTTATTTAGTCTCATGACCTTATCCTTTTaGATGTTACCCGGAATGGAACCTGTGGAATCCTGT +
Preference number: 3 (lower is better)
Translates to: NMPLFSLMTLSF*MLPGMEPVESC
Trigger: ACAGGATTCCACAGGTTCCATTCCGGGTAACATGCAAAAGGATAAGGTCATGAGACTAAATAAAGGCATATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000227663.2
ENSMUST00000228050.2
3UTR GCA 72 bp TTTGCTATCACATTTCCAGCTCATCACCTAATATTCTaGCACCAGATAAAGCACTGTTGTGTAATGGTATTT +
Preference number: 3 (lower is better)
Translates to: FAITFPAHHLIF*HQIKHCCVMVF
Trigger: AAATACCATTACACAACAGTGCTTTATCTGGTGGCAGAATATTAGGTGATGAGCTGGAAATGTGATAGCAAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR TCA 90 bp CCCAGTCTCCTGGAGAGGATTCTTCCGTCCGGTTCCTGCCACGTAGCTGACAGTTCTGGACCCCCGGTCTaGGCCCCAGCGTTCTCCATC +
Preference number: 4 (lower is better)
Translates to: PSLLERILPSGSCHVADSSGPPV*APAFSI
Trigger: GATGGAGAACGCTGGGGCTCAGACCGGGGGTCCAGA...ACTGTCAGCTACGTGGCAGGAACCGGACGGAAGAATCCTCTCCAGGAGACTGGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR TCA 90 bp CCCAGTCTCCTGGAGAGGATTCTTCCGTCCGGTTCCTGCCACGTAGCTGACAGTGAGCGATCTGCTCATTaGGGCTGCCTCTGGACCCCC +
Preference number: 4 (lower is better)
Translates to: PSLLERILPSGSCHVADSERSAH*GCLWTP
Trigger: GGGGGTCCAGAGGCAGCCTCAATGAGCAGATCGCTC...ACTGTCAGCTACGTGGCAGGAACCGGACGGAAGAATCCTCTCCAGGAGACTGGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR TCA 90 bp ACTAAAGCCCAGTCTCCTGGAGAGGATTCTTCCGTCCGGTTCCTGCCACGTAGCGAGCGATCTGCTCATTaGGGCTGCCTCTGGACCCCC +
Preference number: 4 (lower is better)
Translates to: TKAQSPGEDSSVRFLPRSERSAH*GCLWTP
Trigger: GGGGGTCCAGAGGCAGCCTCAATGAGCAGATCGCTC...GCTACGTGGCAGGAACCGGACGGAAGAATCCTCTCCAGGAGACTGGGCTTTAGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR TCA 90 bp CCCAGTCTCCTGGAGAGGATTCTTCCGTCCGGTTCCTGCCACGTAGCTGACAGTCTACTCTCCCTCTCCTaGCACTGGAGAAGTCCTCGC +
Preference number: 4 (lower is better)
Translates to: PSLLERILPSGSCHVADSLLSLS*HWRSPR
Trigger: GCGAGGACTTCTCCAGTGTCAGGAGAGGGAGAGTAG...ACTGTCAGCTACGTGGCAGGAACCGGACGGAAGAATCCTCTCCAGGAGACTGGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114529.10
ENSMUST00000228050.2
CDS-3UTR TCA 90 bp GGAACCTGTGGAATCCTGTGCTTGGGATTTCGGACAGTTGTATCTCCTGCCTGCTCTGGACCCCCGGTCTaGGCCCCAGCGTTCTCCATC +
Preference number: 4 (lower is better)
Translates to: GTCGILCLGFRTVVSPACSGPPV*APAFSI
Trigger: GATGGAGAACGCTGGGGCTCAGACCGGGGGTCCAGA...GCAGGCAGGAGATACAACTGTCCGAAATCCCAAGCACAGGATTCCACAGGTTCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR TCA 90 bp ACTAAAGCCCAGTCTCCTGGAGAGGATTCTTCCGTCCGGTTCCTGCCACGTAGCCTACTCTCCCTCTCCTaGCACTGGAGAAGTCCTCGC +
Preference number: 4 (lower is better)
Translates to: TKAQSPGEDSSVRFLPRSLLSLS*HWRSPR
Trigger: GCGAGGACTTCTCCAGTGTCAGGAGAGGGAGAGTAG...GCTACGTGGCAGGAACCGGACGGAAGAATCCTCTCCAGGAGACTGGGCTTTAGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114529.10
ENSMUST00000228050.2
CDS-3UTR GCA 90 bp CCCAGTCTCCTGGAGAGGATTCTTCCGTCCGGTTCCTGCCACGTAGCTGACAGTGGTGCGGTGCTCCACTaGTACTTCTGCCATCTTCTC +
Preference number: 4 (lower is better)
Translates to: PSLLERILPSGSCHVADSGAVLH*YFCHLL
Trigger: GAGAAGATGGCAGAAGTAGCAGTGGAGCACCGCACC...ACTGTCAGCTACGTGGCAGGAACCGGACGGAAGAATCCTCTCCAGGAGACTGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR GCA 90 bp ACTAAAGCCCAGTCTCCTGGAGAGGATTCTTCCGTCCGGTTCCTGCCACGTAGCCCTCCACTTCCTACTTaGCGACCCTTGGGTCCTTCG +
Preference number: 4 (lower is better)
Translates to: TKAQSPGEDSSVRFLPRSPPLPT*RPLGPS
Trigger: CGAAGGACCCAAGGGTCGGCAAGTAGGAAGTGGAGG...GCTACGTGGCAGGAACCGGACGGAAGAATCCTCTCCAGGAGACTGGGCTTTAGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR GCA 90 bp CAGGTAGTCAAGGTCATCTTCAGCTACATAGAGAATTGGAGGCTGGTAGGAGCTTCCGCCATCTCCAGCTaGCAGCGCCGGCCTCGGTCC +
Preference number: 4 (lower is better)
Translates to: QVVKVIFSYIENWRLVGASAISS*QRRPRS
Trigger: GGACCGAGGCCGGCGCTGGCAGCTGGAGATGGCGGA...AGCTCCTACCAGCCTCCAATTCTCTATGTAGCTGAAGATGACCTTGACTACCTG
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000228050.2
CDS-3UTR TCA 90 bp CCCAGTCTCCTGGAGAGGATTCTTCCGTCCGGTTCCTGCCACGTAGCTGACAGTCCAGAATCCAGGCCGTaGAAGTTTACAGGGTCCTTC +
Preference number: 4 (lower is better)
Translates to: PSLLERILPSGSCHVADSPESRP*KFTGSF
Trigger: GAAGGACCCTGTAAACTTTCACGGCCTGGATTCTGG...ACTGTCAGCTACGTGGCAGGAACCGGACGGAAGAATCCTCTCCAGGAGACTGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR TCA 90 bp TTTCCAGTCCGTCTCTTAGGTCGTCCAGGCCCAGCAGTCTTCTTGAGTAAAAAGTCTGGACCCCCGGTCTaGGCCCCAGCGTTCTCCATC +
Preference number: 4 (lower is better)
Translates to: FPVRLLGRPGPAVFLSKKSGPPV*APAFSI
Trigger: GATGGAGAACGCTGGGGCTCAGACCGGGGGTCCAGA...CTTTTTACTCAAGAAGACTGCTGGGCCTGGACGACCTAAGAGACGGACTGGAAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS-3UTR TCA 90 bp ACTTCATTTCCAGTCCGTCTCTTAGGTCGTCCAGGCCCAGCAGTCTTCTTGAGTGAGCGATCTGCTCATTaGGGCTGCCTCTGGACCCCC +
Preference number: 4 (lower is better)
Translates to: TSFPVRLLGRPGPAVFLSERSAH*GCLWTP
Trigger: GGGGGTCCAGAGGCAGCCTCAATGAGCAGATCGCTC...ACTCAAGAAGACTGCTGGGCCTGGACGACCTAAGAGACGGACTGGAAATGAAGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS-3UTR GCA 90 bp CCCAGTCTCCTGGAGAGGATTCTTCCGTCCGGTTCCTGCCACGTAGCTGACAGTAGCACAAGAGCGATCTaGTCATTGAGGCTGCCTCTG +
Preference number: 4 (lower is better)
Translates to: PSLLERILPSGSCHVADSSTRAI*SLRLPL
Trigger: CAGAGGCAGCCTCAATGAGCAGATCGCTCTTGTGCT...ACTGTCAGCTACGTGGCAGGAACCGGACGGAAGAATCCTCTCCAGGAGACTGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR CCA 90 bp CCCAGTCTCCTGGAGAGGATTCTTCCGTCCGGTTCCTGCCACGTAGCTGACAGTCTACTTGCCGACCCTTaGGTCCTTCGCTCAAATGTG +
Preference number: 4 (lower is better)
Translates to: PSLLERILPSGSCHVADSLLADP*VLRSNV
Trigger: CACATTTGAGCGAAGGACCCAAGGGTCGGCAAGTAG...ACTGTCAGCTACGTGGCAGGAACCGGACGGAAGAATCCTCTCCAGGAGACTGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR TCA 90 bp CAGGTAGTCAAGGTCATCTTCAGCTACATAGAGAATTGGAGGCTGGTAGGAGCTTCTGGACCCCCGGTCTaGGCCCCAGCGTTCTCCATC +
Preference number: 4 (lower is better)
Translates to: QVVKVIFSYIENWRLVGASGPPV*APAFSI
Trigger: GATGGAGAACGCTGGGGCTCAGACCGGGGGTCCAGA...AGCTCCTACCAGCCTCCAATTCTCTATGTAGCTGAAGATGACCTTGACTACCTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR TCA 90 bp TTTCCAGTCCGTCTCTTAGGTCGTCCAGGCCCAGCAGTCTTCTTGAGTAAAAAGGAGCGATCTGCTCATTaGGGCTGCCTCTGGACCCCC +
Preference number: 4 (lower is better)
Translates to: FPVRLLGRPGPAVFLSKKERSAH*GCLWTP
Trigger: GGGGGTCCAGAGGCAGCCTCAATGAGCAGATCGCTC...CTTTTTACTCAAGAAGACTGCTGGGCCTGGACGACCTAAGAGACGGACTGGAAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS-3UTR TCA 90 bp CCACCCCCAACACGCCTCTTTCACATAAACATTGTTTGGGCTGAAGGCCATTTGGAGCGATCTGCTCATTaGGGCTGCCTCTGGACCCCC +
Preference number: 4 (lower is better)
Translates to: PPPTRLFHINIVWAEGHLERSAH*GCLWTP
Trigger: GGGGGTCCAGAGGCAGCCTCAATGAGCAGATCGCTC...CAAATGGCCTTCAGCCCAAACAATGTTTATGTGAAAGAGGCGTGTTGGGGGTGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR TCA 90 bp ACTAAAGCCCAGTCTCCTGGAGAGGATTCTTCCGTCCGGTTCCTGCCACGTAGCCCAAGCTGGTCTCTGTaGGGAGGGCTGATTACTTGT +
Preference number: 4 (lower is better)
Translates to: TKAQSPGEDSSVRFLPRSPSWSL*GGLITC
Trigger: ACAAGTAATCAGCCCTCCTCACAGAGACCAGCTTGG...GCTACGTGGCAGGAACCGGACGGAAGAATCCTCTCCAGGAGACTGGGCTTTAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR GCA 90 bp ACTAAAGCCCAGTCTCCTGGAGAGGATTCTTCCGTCCGGTTCCTGCCACGTAGCAGCACAAGAGCGATCTaGTCATTGAGGCTGCCTCTG +
Preference number: 4 (lower is better)
Translates to: TKAQSPGEDSSVRFLPRSSTRAI*SLRLPL
Trigger: CAGAGGCAGCCTCAATGAGCAGATCGCTCTTGTGCT...GCTACGTGGCAGGAACCGGACGGAAGAATCCTCTCCAGGAGACTGGGCTTTAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR CCA 90 bp ACTAAAGCCCAGTCTCCTGGAGAGGATTCTTCCGTCCGGTTCCTGCCACGTAGCCGGCCGCCTCAAATCTaGTTTCATACACTGACGGTG +
Preference number: 4 (lower is better)
Translates to: TKAQSPGEDSSVRFLPRSRPPQI*FHTLTV
Trigger: CACCGTCAGTGTATGAAACCAGATTTGAGGCGGCCG...GCTACGTGGCAGGAACCGGACGGAAGAATCCTCTCCAGGAGACTGGGCTTTAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR CCA 90 bp ACTAAAGCCCAGTCTCCTGGAGAGGATTCTTCCGTCCGGTTCCTGCCACGTAGCTTTTTCGGCAAACTCTaGATCACCTTCACGGCCGCC +
Preference number: 4 (lower is better)
Translates to: TKAQSPGEDSSVRFLPRSFFGKL*ITFTAA
Trigger: GGCGGCCGTGAAGGTGATCCAGAGTTTGCCGAAAAA...GCTACGTGGCAGGAACCGGACGGAAGAATCCTCTCCAGGAGACTGGGCTTTAGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR CCA 90 bp CCCAGTCTCCTGGAGAGGATTCTTCCGTCCGGTTCCTGCCACGTAGCTGACAGTCATCTTCACTGCTTCTaGTGCTCCGGGAAGAATCAG +
Preference number: 4 (lower is better)
Translates to: PSLLERILPSGSCHVADSHLHCF*CSGKNQ
Trigger: CTGATTCTTCCCGGAGCACCAGAAGCAGTGAAGATG...ACTGTCAGCTACGTGGCAGGAACCGGACGGAAGAATCCTCTCCAGGAGACTGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR CCA 90 bp ACTAAAGCCCAGTCTCCTGGAGAGGATTCTTCCGTCCGGTTCCTGCCACGTAGCGGTGAGCACAGACAATaGTGTGTCCTGTCTGCTGAG +
Preference number: 4 (lower is better)
Translates to: TKAQSPGEDSSVRFLPRSGEHRQ*CVLSAE
Trigger: CTCAGCAGACAGGACACACCATTGTCTGTGCTCACC...GCTACGTGGCAGGAACCGGACGGAAGAATCCTCTCCAGGAGACTGGGCTTTAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR TCA 90 bp ACTTCATTTCCAGTCCGTCTCTTAGGTCGTCCAGGCCCAGCAGTCTTCTTGAGTCTACTCTCCCTCTCCTaGCACTGGAGAAGTCCTCGC +
Preference number: 4 (lower is better)
Translates to: TSFPVRLLGRPGPAVFLSLLSLS*HWRSPR
Trigger: GCGAGGACTTCTCCAGTGTCAGGAGAGGGAGAGTAG...ACTCAAGAAGACTGCTGGGCCTGGACGACCTAAGAGACGGACTGGAAATGAAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000228050.2
CDS-3UTR TCA 90 bp AACTCAGGTAGTCAAGGTCATCTTCAGCTACATAGAGAATTGGAGGCTGGTAGGTCTGGACCCCCGGTCTaGGCCCCAGCGTTCTCCATC +
Preference number: 4 (lower is better)
Translates to: NSGSQGHLQLHRELEAGRSGPPV*APAFSI
Trigger: GATGGAGAACGCTGGGGCTCAGACCGGGGGTCCAGA...CCTACCAGCCTCCAATTCTCTATGTAGCTGAAGATGACCTTGACTACCTGAGTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR TCA 90 bp CAGGTAGTCAAGGTCATCTTCAGCTACATAGAGAATTGGAGGCTGGTAGGAGCTGAGCGATCTGCTCATTaGGGCTGCCTCTGGACCCCC +
Preference number: 4 (lower is better)
Translates to: QVVKVIFSYIENWRLVGAERSAH*GCLWTP
Trigger: GGGGGTCCAGAGGCAGCCTCAATGAGCAGATCGCTC...AGCTCCTACCAGCCTCCAATTCTCTATGTAGCTGAAGATGACCTTGACTACCTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR TCA 90 bp GAACCTGGAGGCAGGAGCAATAGAGACCATGAAGGGGTGCTGCTTACTGGCTTGCCAAGCTGGTCTCTGTaGGGAGGGCTGATTACTTGT +
Preference number: 4 (lower is better)
Translates to: EPGGRSNRDHEGVLLTGLPSWSL*GGLITC
Trigger: ACAAGTAATCAGCCCTCCTCACAGAGACCAGCTTGG...CAAGCCAGTAAGCAGCACCCCTTCATGGTCTCTATTGCTCCTGCCTCCAGGTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228050.2
CDS-3UTR CCA 90 bp ACTAAAGCCCAGTCTCCTGGAGAGGATTCTTCCGTCCGGTTCCTGCCACGTAGCCATCTTCACTGCTTCTaGTGCTCCGGGAAGAATCAG +
Preference number: 4 (lower is better)
Translates to: TKAQSPGEDSSVRFLPRSHLHCF*CSGKNQ
Trigger: CTGATTCTTCCCGGAGCACCAGAAGCAGTGAAGATG...GCTACGTGGCAGGAACCGGACGGAAGAATCCTCTCCAGGAGACTGGGCTTTAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR TCA 90 bp CCCAGTCTCCTGGAGAGGATTCTTCCGTCCGGTTCCTGCCACGTAGCTGACAGTAGTCATATCACCCAGTaGACTCCAAGCATCCCATTT +
Preference number: 4 (lower is better)
Translates to: PSLLERILPSGSCHVADSSHITQ*TPSIPF
Trigger: AAATGGGATGCTTGGAGTTCACTGGGTGATATGACT...ACTGTCAGCTACGTGGCAGGAACCGGACGGAAGAATCCTCTCCAGGAGACTGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR TCA 90 bp CAGGTAGTCAAGGTCATCTTCAGCTACATAGAGAATTGGAGGCTGGTAGGAGCTTCCCTCTCCCTCTCCTaGCACTGGAGAAGTCCTCGC +
Preference number: 4 (lower is better)
Translates to: QVVKVIFSYIENWRLVGASLSLS*HWRSPR
Trigger: GCGAGGACTTCTCCAGTGTCAGGAGAGGGAGAGGGA...AGCTCCTACCAGCCTCCAATTCTCTATGTAGCTGAAGATGACCTTGACTACCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000114526.9
ENSMUST00000226571.2
ENSMUST00000227663.2
CDS-3UTR GCA 90 bp CCCAGTCTCCTGGAGAGGATTCTTCCGTCCGGTTCCTGCCACGTAGCTGACAGTGCCTTTTCCTTTGACTaGTACCATCCACATTTTCCC +
Preference number: 4 (lower is better)
Translates to: PSLLERILPSGSCHVADSAFSFD*YHPHFP
Trigger: GGGAAAATGTGGATGGTAGCAGTCAAAGGAAAAGGC...ACTGTCAGCTACGTGGCAGGAACCGGACGGAAGAATCCTCTCCAGGAGACTGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR GCA 90 bp ACTTCATTTCCAGTCCGTCTCTTAGGTCGTCCAGGCCCAGCAGTCTTCTTGAGTGGTGCGGTGCTCCACTaGTACTTCTGCCATCTTCTC +
Preference number: 4 (lower is better)
Translates to: TSFPVRLLGRPGPAVFLSGAVLH*YFCHLL
Trigger: GAGAAGATGGCAGAAGTAGCAGTGGAGCACCGCACC...ACTCAAGAAGACTGCTGGGCCTGGACGACCTAAGAGACGGACTGGAAATGAAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS-3UTR GCA 90 bp TTTCCAGTCCGTCTCTTAGGTCGTCCAGGCCCAGCAGTCTTCTTGAGTAAAAAGCCTCCACTTCCTACTTaGCGACCCTTGGGTCCTTCG +
Preference number: 4 (lower is better)
Translates to: FPVRLLGRPGPAVFLSKKPPLPT*RPLGPS
Trigger: CGAAGGACCCAAGGGTCGGCAAGTAGGAAGTGGAGG...CTTTTTACTCAAGAAGACTGCTGGGCCTGGACGACCTAAGAGACGGACTGGAAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS-3UTR GCA 90 bp TTTCGGACAGTTGTATCTCCTGCCTGCCATTTAAGATTACTGTATATGAACCACTCCGCCATCTCCAGCTaGCAGCGCCGGCCTCGGTCC +
Preference number: 4 (lower is better)
Translates to: FRTVVSPACHLRLLYMNHSAISS*QRRPRS
Trigger: GGACCGAGGCCGGCGCTGGCAGCTGGAGATGGCGGA...GTGGTTCATATACAGTAATCTTAAATGGCAGGCAGGAGATACAACTGTCCGAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228050.2
CDS-3UTR CCA 90 bp GGAACCTGTGGAATCCTGTGCTTGGGATTTCGGACAGTTGTATCTCCTGCCTGCCTACTTGCCGACCCTTaGGTCCTTCGCTCAAATGTG +
Preference number: 4 (lower is better)
Translates to: GTCGILCLGFRTVVSPACLLADP*VLRSNV
Trigger: CACATTTGAGCGAAGGACCCAAGGGTCGGCAAGTAG...GCAGGCAGGAGATACAACTGTCCGAAATCCCAAGCACAGGATTCCACAGGTTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR CCA 90 bp CCCAGTCTCCTGGAGAGGATTCTTCCGTCCGGTTCCTGCCACGTAGCTGACAGTTCCTTCGCTCAAATGTaGTATTCTATTCCCTCTCCC +
Preference number: 4 (lower is better)
Translates to: PSLLERILPSGSCHVADSSFAQM*YSIPSP
Trigger: GGGAGAGGGAATAGAATACCACATTTGAGCGAAGGA...ACTGTCAGCTACGTGGCAGGAACCGGACGGAAGAATCCTCTCCAGGAGACTGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000114526.9
ENSMUST00000226571.2
ENSMUST00000227663.2
CDS-3UTR TCA 90 bp ACTTCATTTCCAGTCCGTCTCTTAGGTCGTCCAGGCCCAGCAGTCTTCTTGAGTCCAGAATCCAGGCCGTaGAAGTTTACAGGGTCCTTC +
Preference number: 4 (lower is better)
Translates to: TSFPVRLLGRPGPAVFLSPESRP*KFTGSF
Trigger: GAAGGACCCTGTAAACTTTCACGGCCTGGATTCTGG...ACTCAAGAAGACTGCTGGGCCTGGACGACCTAAGAGACGGACTGGAAATGAAGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS-3UTR TCA 90 bp CCCAGTCTCCTGGAGAGGATTCTTCCGTCCGGTTCCTGCCACGTAGCTGACAGTAACAGCTTTGGCATTTaGAGAGGTCAGAACATTACC +
Preference number: 4 (lower is better)
Translates to: PSLLERILPSGSCHVADSNSFGI*RGQNIT
Trigger: GGTAATGTTCTGACCTCTTCAAATGCCAAAGCTGTT...ACTGTCAGCTACGTGGCAGGAACCGGACGGAAGAATCCTCTCCAGGAGACTGGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR TCA 90 bp CAGGTAGTCAAGGTCATCTTCAGCTACATAGAGAATTGGAGGCTGGTAGGAGCTCTACTCTCCCTCTCCTaGCACTGGAGAAGTCCTCGC +
Preference number: 4 (lower is better)
Translates to: QVVKVIFSYIENWRLVGALLSLS*HWRSPR
Trigger: GCGAGGACTTCTCCAGTGTCAGGAGAGGGAGAGTAG...AGCTCCTACCAGCCTCCAATTCTCTATGTAGCTGAAGATGACCTTGACTACCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114529.10
ENSMUST00000228050.2
CDS-3UTR TCA 90 bp ACTTCATTTCCAGTCCGTCTCTTAGGTCGTCCAGGCCCAGCAGTCTTCTTGAGTCCAAGCTGGTCTCTGTaGGGAGGGCTGATTACTTGT +
Preference number: 4 (lower is better)
Translates to: TSFPVRLLGRPGPAVFLSPSWSL*GGLITC
Trigger: ACAAGTAATCAGCCCTCCTCACAGAGACCAGCTTGG...ACTCAAGAAGACTGCTGGGCCTGGACGACCTAAGAGACGGACTGGAAATGAAGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS-3UTR GCA 90 bp CCCAGTCTCCTGGAGAGGATTCTTCCGTCCGGTTCCTGCCACGTAGCTGACAGTACATTTTCCCAATGCTaGCATTTCCAGGAGATTGCT +
Preference number: 4 (lower is better)
Translates to: PSLLERILPSGSCHVADSTFSQC*HFQEIA
Trigger: AGCAATCTCCTGGAAATGGCAGCATTGGGAAAATGT...ACTGTCAGCTACGTGGCAGGAACCGGACGGAAGAATCCTCTCCAGGAGACTGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR GCA 90 bp TTTCCAGTCCGTCTCTTAGGTCGTCCAGGCCCAGCAGTCTTCTTGAGTAAAAAGGGTGCGGTGCTCCACTaGTACTTCTGCCATCTTCTC +
Preference number: 4 (lower is better)
Translates to: FPVRLLGRPGPAVFLSKKGAVLH*YFCHLL
Trigger: GAGAAGATGGCAGAAGTAGCAGTGGAGCACCGCACC...CTTTTTACTCAAGAAGACTGCTGGGCCTGGACGACCTAAGAGACGGACTGGAAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS-3UTR GCA 90 bp CAGGTAGTCAAGGTCATCTTCAGCTACATAGAGAATTGGAGGCTGGTAGGAGCTCCTCCACTTCCTACTTaGCGACCCTTGGGTCCTTCG +
Preference number: 4 (lower is better)
Translates to: QVVKVIFSYIENWRLVGAPPLPT*RPLGPS
Trigger: CGAAGGACCCAAGGGTCGGCAAGTAGGAAGTGGAGG...AGCTCCTACCAGCCTCCAATTCTCTATGTAGCTGAAGATGACCTTGACTACCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR GCA 90 bp ACTTCATTTCCAGTCCGTCTCTTAGGTCGTCCAGGCCCAGCAGTCTTCTTGAGTAGCACAAGAGCGATCTaGTCATTGAGGCTGCCTCTG +
Preference number: 4 (lower is better)
Translates to: TSFPVRLLGRPGPAVFLSSTRAI*SLRLPL
Trigger: CAGAGGCAGCCTCAATGAGCAGATCGCTCTTGTGCT...ACTCAAGAAGACTGCTGGGCCTGGACGACCTAAGAGACGGACTGGAAATGAAGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS-3UTR GCA 90 bp CCCAGTCTCCTGGAGAGGATTCTTCCGTCCGGTTCCTGCCACGTAGCTGACAGTTTCTGCATGTCCTCCTaGAATCTAATGAGCACAAGA +
Preference number: 4 (lower is better)
Translates to: PSLLERILPSGSCHVADSFCMSS*NLMSTR
Trigger: TCTTGTGCTCATTAGATTGCAGGAGGACATGCAGAA...ACTGTCAGCTACGTGGCAGGAACCGGACGGAAGAATCCTCTCCAGGAGACTGGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR CCA 90 bp ACTTCATTTCCAGTCCGTCTCTTAGGTCGTCCAGGCCCAGCAGTCTTCTTGAGTCGGCCGCCTCAAATCTaGTTTCATACACTGACGGTG +
Preference number: 4 (lower is better)
Translates to: TSFPVRLLGRPGPAVFLSRPPQI*FHTLTV
Trigger: CACCGTCAGTGTATGAAACCAGATTTGAGGCGGCCG...ACTCAAGAAGACTGCTGGGCCTGGACGACCTAAGAGACGGACTGGAAATGAAGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS-3UTR CCA 90 bp ACTTCATTTCCAGTCCGTCTCTTAGGTCGTCCAGGCCCAGCAGTCTTCTTGAGTTTTTTCGGCAAACTCTaGATCACCTTCACGGCCGCC +
Preference number: 4 (lower is better)
Translates to: TSFPVRLLGRPGPAVFLSFFGKL*ITFTAA
Trigger: GGCGGCCGTGAAGGTGATCCAGAGTTTGCCGAAAAA...ACTCAAGAAGACTGCTGGGCCTGGACGACCTAAGAGACGGACTGGAAATGAAGT
52% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS-3UTR CCA 90 bp CCCAGTCTCCTGGAGAGGATTCTTCCGTCCGGTTCCTGCCACGTAGCTGACAGTCCTTTTAACTCTTCTTaGGCCTCTTCTTCTTCAGAC +
Preference number: 4 (lower is better)
Translates to: PSLLERILPSGSCHVADSPFNSS*ASSSSD
Trigger: GTCTGAAGAAGAAGAGGCCCAAGAAGAGTTAAAAGG...ACTGTCAGCTACGTGGCAGGAACCGGACGGAAGAATCCTCTCCAGGAGACTGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR CCA 90 bp ACTTCATTTCCAGTCCGTCTCTTAGGTCGTCCAGGCCCAGCAGTCTTCTTGAGTGGTGAGCACAGACAATaGTGTGTCCTGTCTGCTGAG +
Preference number: 4 (lower is better)
Translates to: TSFPVRLLGRPGPAVFLSGEHRQ*CVLSAE
Trigger: CTCAGCAGACAGGACACACCATTGTCTGTGCTCACC...ACTCAAGAAGACTGCTGGGCCTGGACGACCTAAGAGACGGACTGGAAATGAAGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS-3UTR CCA 90 bp ACTTCATTTCCAGTCCGTCTCTTAGGTCGTCCAGGCCCAGCAGTCTTCTTGAGTCTACTTGCCGACCCTTaGGTCCTTCGCTCAAATGTG +
Preference number: 4 (lower is better)
Translates to: TSFPVRLLGRPGPAVFLSLLADP*VLRSNV
Trigger: CACATTTGAGCGAAGGACCCAAGGGTCGGCAAGTAG...ACTCAAGAAGACTGCTGGGCCTGGACGACCTAAGAGACGGACTGGAAATGAAGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS-3UTR TCA 90 bp TTTCCAGTCCGTCTCTTAGGTCGTCCAGGCCCAGCAGTCTTCTTGAGTAAAAAGCCAGAATCCAGGCCGTaGAAGTTTACAGGGTCCTTC +
Preference number: 4 (lower is better)
Translates to: FPVRLLGRPGPAVFLSKKPESRP*KFTGSF
Trigger: GAAGGACCCTGTAAACTTTCACGGCCTGGATTCTGG...CTTTTTACTCAAGAAGACTGCTGGGCCTGGACGACCTAAGAGACGGACTGGAAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS-3UTR TCA 90 bp ACTAAAGCCCAGTCTCCTGGAGAGGATTCTTCCGTCCGGTTCCTGCCACGTAGCAACAGCTTTGGCATTTaGAGAGGTCAGAACATTACC +
Preference number: 4 (lower is better)
Translates to: TKAQSPGEDSSVRFLPRSNSFGI*RGQNIT
Trigger: GGTAATGTTCTGACCTCTTCAAATGCCAAAGCTGTT...GCTACGTGGCAGGAACCGGACGGAAGAATCCTCTCCAGGAGACTGGGCTTTAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR TCA 90 bp ACTAAAGCCCAGTCTCCTGGAGAGGATTCTTCCGTCCGGTTCCTGCCACGTAGCTCATTTCTATCTTGGTaGGCACAGACAATGGTGTGT +
Preference number: 4 (lower is better)
Translates to: TKAQSPGEDSSVRFLPRSSFLSW*AQTMVC
Trigger: ACACACCATTGTCTGTGCTCACCAAGATAGAAATGA...GCTACGTGGCAGGAACCGGACGGAAGAATCCTCTCCAGGAGACTGGGCTTTAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR TCA 90 bp AAACTGAGATTTTCTTCTGAATTCCACTTCATTTCCAGTCCGTCTCTTAGGTCGTCTGGACCCCCGGTCTaGGCCCCAGCGTTCTCCATC +
Preference number: 4 (lower is better)
Translates to: KLRFSSEFHFISSPSLRSSGPPV*APAFSI
Trigger: GATGGAGAACGCTGGGGCTCAGACCGGGGGTCCAGA...CGACCTAAGAGACGGACTGGAAATGAAGTGGAATTCAGAAGAAAATCTCAGTTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS-3UTR TCA 90 bp CCCAGTCTCCTGGAGAGGATTCTTCCGTCCGGTTCCTGCCACGTAGCTGACAGTAAATGTGCCAACCACTaGGCAATAAAAGGCCATATA +
Preference number: 4 (lower is better)
Translates to: PSLLERILPSGSCHVADSKCANH*AIKGHI
Trigger: TATATGGCCTTTTATTGCTCAGTGGTTGGCACATTT...ACTGTCAGCTACGTGGCAGGAACCGGACGGAAGAATCCTCTCCAGGAGACTGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR GCA 90 bp CCCAGTCTCCTGGAGAGGATTCTTCCGTCCGGTTCCTGCCACGTAGCTGACAGTAATGGACCTATAACATaGAGCAACTCTTCCACTTTC +
Preference number: 4 (lower is better)
Translates to: PSLLERILPSGSCHVADSNGPIT*SNSSTF
Trigger: GAAAGTGGAAGAGTTGCTGCATGTTATAGGTCCATT...ACTGTCAGCTACGTGGCAGGAACCGGACGGAAGAATCCTCTCCAGGAGACTGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR GCA 90 bp TCTTATAGAAGCCAGGACCACCAGCCCAGGGGAGGCACCACCCACAACAGCAGCAGTCAGAACTCTTGCTaGTCTTTTTGTCTTCTACAA +
Preference number: 4 (lower is better)
Translates to: SYRSQDHQPRGGTTHNSSSQNSC*SFCLLQ
Trigger: TTGTAGAAGACAAAAAGAGCAGCAAGAGTTCTGACT...GCTGCTGTTGTGGGTGGTGCCTCCCCTGGGCTGGTGGTCCTGGCTTCTATAAGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR GCA 90 bp TCTTATAGAAGCCAGGACCACCAGCCCAGGGGAGGCACCACCCACAACAGCAGCTCAAGTCAGAACTCTTaGTGCTCTTTTTGTCTTCTA +
Preference number: 4 (lower is better)
Translates to: SYRSQDHQPRGGTTHNSSSSQNS*CSFCLL
Trigger: TAGAAGACAAAAAGAGCAGCAAGAGTTCTGACTTGA...GCTGCTGTTGTGGGTGGTGCCTCCCCTGGGCTGGTGGTCCTGGCTTCTATAAGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR GCA 90 bp CCCAGTCTCCTGGAGAGGATTCTTCCGTCCGGTTCCTGCCACGTAGCTGACAGTTCTTCTTGTCCAAATTaGTCCATAGAGTCACAGTAC +
Preference number: 4 (lower is better)
Translates to: PSLLERILPSGSCHVADSSSCPN*SIESQY
Trigger: GTACTGTGACTCTATGGAGCAATTTGGACAAGAAGA...ACTGTCAGCTACGTGGCAGGAACCGGACGGAAGAATCCTCTCCAGGAGACTGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR GCA 90 bp CAGGTAGTCAAGGTCATCTTCAGCTACATAGAGAATTGGAGGCTGGTAGGAGCTGGTGCGGTGCTCCACTaGTACTTCTGCCATCTTCTC +
Preference number: 4 (lower is better)
Translates to: QVVKVIFSYIENWRLVGAGAVLH*YFCHLL
Trigger: GAGAAGATGGCAGAAGTAGCAGTGGAGCACCGCACC...AGCTCCTACCAGCCTCCAATTCTCTATGTAGCTGAAGATGACCTTGACTACCTG
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR GCA 90 bp TTTCCAGTCCGTCTCTTAGGTCGTCCAGGCCCAGCAGTCTTCTTGAGTAAAAAGAGCACAAGAGCGATCTaGTCATTGAGGCTGCCTCTG +
Preference number: 4 (lower is better)
Translates to: FPVRLLGRPGPAVFLSKKSTRAI*SLRLPL
Trigger: CAGAGGCAGCCTCAATGAGCAGATCGCTCTTGTGCT...CTTTTTACTCAAGAAGACTGCTGGGCCTGGACGACCTAAGAGACGGACTGGAAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS-3UTR GCA 90 bp CCCAGTCTCCTGGAGAGGATTCTTCCGTCCGGTTCCTGCCACGTAGCTGACAGTAAAGATAATTTCGCCTaGGAAGCAGTTAGTGTTTCC +
Preference number: 4 (lower is better)
Translates to: PSLLERILPSGSCHVADSKDNFA*EAVSVS
Trigger: GGAAACACTAACTGCTTCGCAGGCGAAATTATCTTT...ACTGTCAGCTACGTGGCAGGAACCGGACGGAAGAATCCTCTCCAGGAGACTGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR CCA 90 bp TTTCCAGTCCGTCTCTTAGGTCGTCCAGGCCCAGCAGTCTTCTTGAGTAAAAAGTTTTTCGGCAAACTCTaGATCACCTTCACGGCCGCC +
Preference number: 4 (lower is better)
Translates to: FPVRLLGRPGPAVFLSKKFFGKL*ITFTAA
Trigger: GGCGGCCGTGAAGGTGATCCAGAGTTTGCCGAAAAA...CTTTTTACTCAAGAAGACTGCTGGGCCTGGACGACCTAAGAGACGGACTGGAAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS-3UTR CCA 90 bp ACTAAAGCCCAGTCTCCTGGAGAGGATTCTTCCGTCCGGTTCCTGCCACGTAGCCCTTTTAACTCTTCTTaGGCCTCTTCTTCTTCAGAC +
Preference number: 4 (lower is better)
Translates to: TKAQSPGEDSSVRFLPRSPFNSS*ASSSSD
Trigger: GTCTGAAGAAGAAGAGGCCCAAGAAGAGTTAAAAGG...GCTACGTGGCAGGAACCGGACGGAAGAATCCTCTCCAGGAGACTGGGCTTTAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR CCA 90 bp ACTTCATTTCCAGTCCGTCTCTTAGGTCGTCCAGGCCCAGCAGTCTTCTTGAGTCATCTTCACTGCTTCTaGTGCTCCGGGAAGAATCAG +
Preference number: 4 (lower is better)
Translates to: TSFPVRLLGRPGPAVFLSHLHCF*CSGKNQ
Trigger: CTGATTCTTCCCGGAGCACCAGAAGCAGTGAAGATG...ACTCAAGAAGACTGCTGGGCCTGGACGACCTAAGAGACGGACTGGAAATGAAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS-3UTR CCA 90 bp TTTCCAGTCCGTCTCTTAGGTCGTCCAGGCCCAGCAGTCTTCTTGAGTAAAAAGGGTGAGCACAGACAATaGTGTGTCCTGTCTGCTGAG +
Preference number: 4 (lower is better)
Translates to: FPVRLLGRPGPAVFLSKKGEHRQ*CVLSAE
Trigger: CTCAGCAGACAGGACACACCATTGTCTGTGCTCACC...CTTTTTACTCAAGAAGACTGCTGGGCCTGGACGACCTAAGAGACGGACTGGAAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS-3UTR CCA 90 bp CCCAGTCTCCTGGAGAGGATTCTTCCGTCCGGTTCCTGCCACGTAGCTGACAGTTCCTTCGCTCAAATGTaGTATTCTATTCCCTACTCT +
Preference number: 4 (lower is better)
Translates to: PSLLERILPSGSCHVADSSFAQM*YSIPYS
Trigger: AGAGTAGGGAATAGAATACCACATTTGAGCGAAGGA...ACTGTCAGCTACGTGGCAGGAACCGGACGGAAGAATCCTCTCCAGGAGACTGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114529.10
ENSMUST00000228050.2
CDS-3UTR CCA 90 bp TTTCCAGTCCGTCTCTTAGGTCGTCCAGGCCCAGCAGTCTTCTTGAGTAAAAAGCTACTTGCCGACCCTTaGGTCCTTCGCTCAAATGTG +
Preference number: 4 (lower is better)
Translates to: FPVRLLGRPGPAVFLSKKLLADP*VLRSNV
Trigger: CACATTTGAGCGAAGGACCCAAGGGTCGGCAAGTAG...CTTTTTACTCAAGAAGACTGCTGGGCCTGGACGACCTAAGAGACGGACTGGAAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
3UTR CAA 72 bp CATGTTACCCGGAATGGAACCTGTGGAATCCTGTGCTaGGGATTTCGGACAGTTGTATCTCCTGCCTGCCAT +
Preference number: 4 (lower is better)
Translates to: HVTRNGTCGILC*GFRTVVSPACH
Trigger: ATGGCAGGCAGGAGATACAACTGTCCGAAATCCCAAGCACAGGATTCCACAGGTTCCATTCCGGGTAACATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR TCA 90 bp CAGGTAGTCAAGGTCATCTTCAGCTACATAGAGAATTGGAGGCTGGTAGGAGCTCCAGAATCCAGGCCGTaGAAGTTTACAGGGTCCTTC +
Preference number: 4 (lower is better)
Translates to: QVVKVIFSYIENWRLVGAPESRP*KFTGSF
Trigger: GAAGGACCCTGTAAACTTTCACGGCCTGGATTCTGG...AGCTCCTACCAGCCTCCAATTCTCTATGTAGCTGAAGATGACCTTGACTACCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR TCA 90 bp AAACTGAGATTTTCTTCTGAATTCCACTTCATTTCCAGTCCGTCTCTTAGGTCGGAGCGATCTGCTCATTaGGGCTGCCTCTGGACCCCC +
Preference number: 4 (lower is better)
Translates to: KLRFSSEFHFISSPSLRSERSAH*GCLWTP
Trigger: GGGGGTCCAGAGGCAGCCTCAATGAGCAGATCGCTC...CGACCTAAGAGACGGACTGGAAATGAAGTGGAATTCAGAAGAAAATCTCAGTTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS-3UTR TCA 90 bp CAGGTAGTCAAGGTCATCTTCAGCTACATAGAGAATTGGAGGCTGGTAGGAGCTCCAAGCTGGTCTCTGTaGGGAGGGCTGATTACTTGT +
Preference number: 4 (lower is better)
Translates to: QVVKVIFSYIENWRLVGAPSWSL*GGLITC
Trigger: ACAAGTAATCAGCCCTCCTCACAGAGACCAGCTTGG...AGCTCCTACCAGCCTCCAATTCTCTATGTAGCTGAAGATGACCTTGACTACCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR GCA 90 bp CCCAGTCTCCTGGAGAGGATTCTTCCGTCCGGTTCCTGCCACGTAGCTGACAGTACTATCACTGCTCTCTaGTTTACCATTAACAGCTTT +
Preference number: 4 (lower is better)
Translates to: PSLLERILPSGSCHVADSTITAL*FTINSF
Trigger: AAAGCTGTTAATGGTAAAGCAGAGAGCAGTGATAGT...ACTGTCAGCTACGTGGCAGGAACCGGACGGAAGAATCCTCTCCAGGAGACTGGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR GCA 90 bp ACTAAAGCCCAGTCTCCTGGAGAGGATTCTTCCGTCCGGTTCCTGCCACGTAGCTCTTCTTGTCCAAATTaGTCCATAGAGTCACAGTAC +
Preference number: 4 (lower is better)
Translates to: TKAQSPGEDSSVRFLPRSSSCPN*SIESQY
Trigger: GTACTGTGACTCTATGGAGCAATTTGGACAAGAAGA...GCTACGTGGCAGGAACCGGACGGAAGAATCCTCTCCAGGAGACTGGGCTTTAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR GCA 90 bp AACTCAGGTAGTCAAGGTCATCTTCAGCTACATAGAGAATTGGAGGCTGGTAGGGGTGCGGTGCTCCACTaGTACTTCTGCCATCTTCTC +
Preference number: 4 (lower is better)
Translates to: NSGSQGHLQLHRELEAGRGAVLH*YFCHLL
Trigger: GAGAAGATGGCAGAAGTAGCAGTGGAGCACCGCACC...CCTACCAGCCTCCAATTCTCTATGTAGCTGAAGATGACCTTGACTACCTGAGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR GCA 90 bp CAGGTAGTCAAGGTCATCTTCAGCTACATAGAGAATTGGAGGCTGGTAGGAGCTAGCACAAGAGCGATCTaGTCATTGAGGCTGCCTCTG +
Preference number: 4 (lower is better)
Translates to: QVVKVIFSYIENWRLVGASTRAI*SLRLPL
Trigger: CAGAGGCAGCCTCAATGAGCAGATCGCTCTTGTGCT...AGCTCCTACCAGCCTCCAATTCTCTATGTAGCTGAAGATGACCTTGACTACCTG
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR GCA 90 bp ACTAAAGCCCAGTCTCCTGGAGAGGATTCTTCCGTCCGGTTCCTGCCACGTAGCAAAGATAATTTCGCCTaGGAAGCAGTTAGTGTTTCC +
Preference number: 4 (lower is better)
Translates to: TKAQSPGEDSSVRFLPRSKDNFA*EAVSVS
Trigger: GGAAACACTAACTGCTTCGCAGGCGAAATTATCTTT...GCTACGTGGCAGGAACCGGACGGAAGAATCCTCTCCAGGAGACTGGGCTTTAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR GCA 90 bp AATACGTTTTCATTTTATTGCAAAGCACCCTATGAAGCAGACAGTAGATATCCTTCCGCCATCTCCAGCTaGCAGCGCCGGCCTCGGTCC +
Preference number: 4 (lower is better)
Translates to: NTFSFYCKAPYEADSRYPSAISS*QRRPRS
Trigger: GGACCGAGGCCGGCGCTGGCAGCTGGAGATGGCGGA...AGGATATCTACTGTCTGCTTCATAGGGTGCTTTGCAATAAAATGAAAACGTATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000228050.2
CDS-3UTR CCA 90 bp TTTCCAGTCCGTCTCTTAGGTCGTCCAGGCCCAGCAGTCTTCTTGAGTAAAAAGCATCTTCACTGCTTCTaGTGCTCCGGGAAGAATCAG +
Preference number: 4 (lower is better)
Translates to: FPVRLLGRPGPAVFLSKKHLHCF*CSGKNQ
Trigger: CTGATTCTTCCCGGAGCACCAGAAGCAGTGAAGATG...CTTTTTACTCAAGAAGACTGCTGGGCCTGGACGACCTAAGAGACGGACTGGAAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS-3UTR CCA 90 bp CCACCCCCAACACGCCTCTTTCACATAAACATTGTTTGGGCTGAAGGCCATTTGCATCTTCACTGCTTCTaGTGCTCCGGGAAGAATCAG +
Preference number: 4 (lower is better)
Translates to: PPPTRLFHINIVWAEGHLHLHCF*CSGKNQ
Trigger: CTGATTCTTCCCGGAGCACCAGAAGCAGTGAAGATG...CAAATGGCCTTCAGCCCAAACAATGTTTATGTGAAAGAGGCGTGTTGGGGGTGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR CCA 90 bp CAGGTAGTCAAGGTCATCTTCAGCTACATAGAGAATTGGAGGCTGGTAGGAGCTGGTGAGCACAGACAATaGTGTGTCCTGTCTGCTGAG +
Preference number: 4 (lower is better)
Translates to: QVVKVIFSYIENWRLVGAGEHRQ*CVLSAE
Trigger: CTCAGCAGACAGGACACACCATTGTCTGTGCTCACC...AGCTCCTACCAGCCTCCAATTCTCTATGTAGCTGAAGATGACCTTGACTACCTG
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR CCA 90 bp CAGGTAGTCAAGGTCATCTTCAGCTACATAGAGAATTGGAGGCTGGTAGGAGCTCTACTTGCCGACCCTTaGGTCCTTCGCTCAAATGTG +
Preference number: 4 (lower is better)
Translates to: QVVKVIFSYIENWRLVGALLADP*VLRSNV
Trigger: CACATTTGAGCGAAGGACCCAAGGGTCGGCAAGTAG...AGCTCCTACCAGCCTCCAATTCTCTATGTAGCTGAAGATGACCTTGACTACCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
3UTR CAA 72 bp AGCAATAGAGACCATGAAGGGGTGCTGCTTACTGGCTaGCTTCTCCTGGCTTGCTCAGCCTGCTTTCTTATA +
Preference number: 4 (lower is better)
Translates to: SNRDHEGVLLTG*LLLACSACFLI
Trigger: TATAAGAAAGCAGGCTGAGCAAGCCAGGAGAAGCAAGCCAGTAAGCAGCACCCCTTCATGGTCTCTATTGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228050.2
CDS-3UTR TCA 90 bp AACTCAGGTAGTCAAGGTCATCTTCAGCTACATAGAGAATTGGAGGCTGGTAGGCCAAGCTGGTCTCTGTaGGGAGGGCTGATTACTTGT +
Preference number: 4 (lower is better)
Translates to: NSGSQGHLQLHRELEAGRPSWSL*GGLITC
Trigger: ACAAGTAATCAGCCCTCCTCACAGAGACCAGCTTGG...CCTACCAGCCTCCAATTCTCTATGTAGCTGAAGATGACCTTGACTACCTGAGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR TCA 90 bp AAACTGAGATTTTCTTCTGAATTCCACTTCATTTCCAGTCCGTCTCTTAGGTCGTCCCTCTCCCTCTCCTaGCACTGGAGAAGTCCTCGC +
Preference number: 4 (lower is better)
Translates to: KLRFSSEFHFISSPSLRSSLSLS*HWRSPR
Trigger: GCGAGGACTTCTCCAGTGTCAGGAGAGGGAGAGGGA...CGACCTAAGAGACGGACTGGAAATGAAGTGGAATTCAGAAGAAAATCTCAGTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000114526.9
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
CDS-3UTR GCA 90 bp ACTAAAGCCCAGTCTCCTGGAGAGGATTCTTCCGTCCGGTTCCTGCCACGTAGCTCAAGTCAGAACTCTTaGTGCTCTTTTTGTCTTCTA +
Preference number: 4 (lower is better)
Translates to: TKAQSPGEDSSVRFLPRSSSQNS*CSFCLL
Trigger: TAGAAGACAAAAAGAGCAGCAAGAGTTCTGACTTGA...GCTACGTGGCAGGAACCGGACGGAAGAATCCTCTCCAGGAGACTGGGCTTTAGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR GCA 90 bp ACTAAAGCCCAGTCTCCTGGAGAGGATTCTTCCGTCCGGTTCCTGCCACGTAGCACTATCACTGCTCTCTaGTTTACCATTAACAGCTTT +
Preference number: 4 (lower is better)
Translates to: TKAQSPGEDSSVRFLPRSTITAL*FTINSF
Trigger: AAAGCTGTTAATGGTAAAGCAGAGAGCAGTGATAGT...GCTACGTGGCAGGAACCGGACGGAAGAATCCTCTCCAGGAGACTGGGCTTTAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR GCA 90 bp ACTTCATTTCCAGTCCGTCTCTTAGGTCGTCCAGGCCCAGCAGTCTTCTTGAGTGCCTTTTCCTTTGACTaGTACCATCCACATTTTCCC +
Preference number: 4 (lower is better)
Translates to: TSFPVRLLGRPGPAVFLSAFSFD*YHPHFP
Trigger: GGGAAAATGTGGATGGTAGCAGTCAAAGGAAAAGGC...ACTCAAGAAGACTGCTGGGCCTGGACGACCTAAGAGACGGACTGGAAATGAAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS-3UTR CCA 90 bp CCCAGTCTCCTGGAGAGGATTCTTCCGTCCGGTTCCTGCCACGTAGCTGACAGTATTTCATTTGTTGGTTaGAATGATCCATTTTTCGGC +
Preference number: 4 (lower is better)
Translates to: PSLLERILPSGSCHVADSISFVG*NDPFFG
Trigger: GCCGAAAAATGGATCATTCCAACCAACAAATGAAAT...ACTGTCAGCTACGTGGCAGGAACCGGACGGAAGAATCCTCTCCAGGAGACTGGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR CCA 90 bp TTGCTTCTCCTGGCTTGCTCAGCCTGCTTTCTTATAGAAGCCAGGACCACCAGCCCTTTTAACTCTTCTTaGGCCTCTTCTTCTTCAGAC +
Preference number: 4 (lower is better)
Translates to: LLLLACSACFLIEARTTSPFNSS*ASSSSD
Trigger: GTCTGAAGAAGAAGAGGCCCAAGAAGAGTTAAAAGG...GCTGGTGGTCCTGGCTTCTATAAGAAAGCAGGCTGAGCAAGCCAGGAGAAGCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228050.2
CDS-3UTR CCA 90 bp CAGGTAGTCAAGGTCATCTTCAGCTACATAGAGAATTGGAGGCTGGTAGGAGCTCATCTTCACTGCTTCTaGTGCTCCGGGAAGAATCAG +
Preference number: 4 (lower is better)
Translates to: QVVKVIFSYIENWRLVGAHLHCF*CSGKNQ
Trigger: CTGATTCTTCCCGGAGCACCAGAAGCAGTGAAGATG...AGCTCCTACCAGCCTCCAATTCTCTATGTAGCTGAAGATGACCTTGACTACCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR CCA 90 bp CCCAGTCTCCTGGAGAGGATTCTTCCGTCCGGTTCCTGCCACGTAGCTGACAGTGAATCACTTGTTAAATaGTGTATTCCTGAAGCATCT +
Preference number: 4 (lower is better)
Translates to: PSLLERILPSGSCHVADSESLVK*CIPEAS
Trigger: AGATGCTTCAGGAATACACCATTTAACAAGTGATTC...ACTGTCAGCTACGTGGCAGGAACCGGACGGAAGAATCCTCTCCAGGAGACTGGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR TCA 90 bp TTTCCAGTCCGTCTCTTAGGTCGTCCAGGCCCAGCAGTCTTCTTGAGTAAAAAGAGTCATATCACCCAGTaGACTCCAAGCATCCCATTT +
Preference number: 4 (lower is better)
Translates to: FPVRLLGRPGPAVFLSKKSHITQ*TPSIPF
Trigger: AAATGGGATGCTTGGAGTTCACTGGGTGATATGACT...CTTTTTACTCAAGAAGACTGCTGGGCCTGGACGACCTAAGAGACGGACTGGAAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS-3UTR TCA 90 bp ACTTCATTTCCAGTCCGTCTCTTAGGTCGTCCAGGCCCAGCAGTCTTCTTGAGTAACAGCTTTGGCATTTaGAGAGGTCAGAACATTACC +
Preference number: 4 (lower is better)
Translates to: TSFPVRLLGRPGPAVFLSNSFGI*RGQNIT
Trigger: GGTAATGTTCTGACCTCTTCAAATGCCAAAGCTGTT...ACTCAAGAAGACTGCTGGGCCTGGACGACCTAAGAGACGGACTGGAAATGAAGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS-3UTR TCA 90 bp AATACGTTTTCATTTTATTGCAAAGCACCCTATGAAGCAGACAGTAGATATCCTTCTGGACCCCCGGTCTaGGCCCCAGCGTTCTCCATC +
Preference number: 4 (lower is better)
Translates to: NTFSFYCKAPYEADSRYPSGPPV*APAFSI
Trigger: GATGGAGAACGCTGGGGCTCAGACCGGGGGTCCAGA...AGGATATCTACTGTCTGCTTCATAGGGTGCTTTGCAATAAAATGAAAACGTATT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR TCA 90 bp AAGCAAAAGCCAGTAGATCATTTTAGGCATATCAACCAAGTTGTGATACACAAGGAGCGATCTGCTCATTaGGGCTGCCTCTGGACCCCC +
Preference number: 4 (lower is better)
Translates to: KQKPVDHFRHINQVVIHKERSAH*GCLWTP
Trigger: GGGGGTCCAGAGGCAGCCTCAATGAGCAGATCGCTC...CTTGTGTATCACAACTTGGTTGATATGCCTAAAATGATCTACTGGCTTTTGCTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR GCA 90 bp ACTTCATTTCCAGTCCGTCTCTTAGGTCGTCCAGGCCCAGCAGTCTTCTTGAGTACAGGGTCCTTCAGTTaGCTGTTTGTAGAAGCTATA +
Preference number: 4 (lower is better)
Translates to: TSFPVRLLGRPGPAVFLSTGSFS*LFVEAI
Trigger: TATAGCTTCTACAAACAGGCAACTGAAGGACCCTGT...ACTCAAGAAGACTGCTGGGCCTGGACGACCTAAGAGACGGACTGGAAATGAAGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS-3UTR GCA 90 bp ACTTCATTTCCAGTCCGTCTCTTAGGTCGTCCAGGCCCAGCAGTCTTCTTGAGTTTTTCTTATCATCACTaGCGCTCTGTTCTGCTCCTT +
Preference number: 4 (lower is better)
Translates to: TSFPVRLLGRPGPAVFLSFSYHH*RSVLLL
Trigger: AAGGAGCAGAACAGAGCGGCAGTGATGATAAGAAAA...ACTCAAGAAGACTGCTGGGCCTGGACGACCTAAGAGACGGACTGGAAATGAAGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS-3UTR GCA 90 bp ACTTCATTTCCAGTCCGTCTCTTAGGTCGTCCAGGCCCAGCAGTCTTCTTGAGTACATTTTCCCAATGCTaGCATTTCCAGGAGATTGCT +
Preference number: 4 (lower is better)
Translates to: TSFPVRLLGRPGPAVFLSTFSQC*HFQEIA
Trigger: AGCAATCTCCTGGAAATGGCAGCATTGGGAAAATGT...ACTCAAGAAGACTGCTGGGCCTGGACGACCTAAGAGACGGACTGGAAATGAAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS-3UTR GCA 90 bp ACTTCATTTCCAGTCCGTCTCTTAGGTCGTCCAGGCCCAGCAGTCTTCTTGAGTTCCACATTTTCCCAATaGTGCCATTTCCAGGAGATT +
Preference number: 4 (lower is better)
Translates to: TSFPVRLLGRPGPAVFLSSTFSQ*CHFQEI
Trigger: AATCTCCTGGAAATGGCAGCATTGGGAAAATGTGGA...ACTCAAGAAGACTGCTGGGCCTGGACGACCTAAGAGACGGACTGGAAATGAAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS-3UTR GCA 90 bp TTTCCAGTCCGTCTCTTAGGTCGTCCAGGCCCAGCAGTCTTCTTGAGTAAAAAGGCCTTTTCCTTTGACTaGTACCATCCACATTTTCCC +
Preference number: 4 (lower is better)
Translates to: FPVRLLGRPGPAVFLSKKAFSFD*YHPHFP
Trigger: GGGAAAATGTGGATGGTAGCAGTCAAAGGAAAAGGC...CTTTTTACTCAAGAAGACTGCTGGGCCTGGACGACCTAAGAGACGGACTGGAAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS-3UTR GCA 90 bp AAACTGAGATTTTCTTCTGAATTCCACTTCATTTCCAGTCCGTCTCTTAGGTCGCCTCCACTTCCTACTTaGCGACCCTTGGGTCCTTCG +
Preference number: 4 (lower is better)
Translates to: KLRFSSEFHFISSPSLRSPPLPT*RPLGPS
Trigger: CGAAGGACCCAAGGGTCGGCAAGTAGGAAGTGGAGG...CGACCTAAGAGACGGACTGGAAATGAAGTGGAATTCAGAAGAAAATCTCAGTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS-3UTR GCA 90 bp ACTTCATTTCCAGTCCGTCTCTTAGGTCGTCCAGGCCCAGCAGTCTTCTTGAGTTTCTGCATGTCCTCCTaGAATCTAATGAGCACAAGA +
Preference number: 4 (lower is better)
Translates to: TSFPVRLLGRPGPAVFLSFCMSS*NLMSTR
Trigger: TCTTGTGCTCATTAGATTGCAGGAGGACATGCAGAA...ACTCAAGAAGACTGCTGGGCCTGGACGACCTAAGAGACGGACTGGAAATGAAGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS-3UTR GCA 90 bp TTGCTTCTCCTGGCTTGCTCAGCCTGCTTTCTTATAGAAGCCAGGACCACCAGCAAAGATAATTTCGCCTaGGAAGCAGTTAGTGTTTCC +
Preference number: 4 (lower is better)
Translates to: LLLLACSACFLIEARTTSKDNFA*EAVSVS
Trigger: GGAAACACTAACTGCTTCGCAGGCGAAATTATCTTT...GCTGGTGGTCCTGGCTTCTATAAGAAAGCAGGCTGAGCAAGCCAGGAGAAGCAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228050.2
CDS-3UTR CCA 90 bp ACTAAAGCCCAGTCTCCTGGAGAGGATTCTTCCGTCCGGTTCCTGCCACGTAGCATTTCATTTGTTGGTTaGAATGATCCATTTTTCGGC +
Preference number: 4 (lower is better)
Translates to: TKAQSPGEDSSVRFLPRSISFVG*NDPFFG
Trigger: GCCGAAAAATGGATCATTCCAACCAACAAATGAAAT...GCTACGTGGCAGGAACCGGACGGAAGAATCCTCTCCAGGAGACTGGGCTTTAGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR CCA 90 bp ACTTCATTTCCAGTCCGTCTCTTAGGTCGTCCAGGCCCAGCAGTCTTCTTGAGTCCTTTTAACTCTTCTTaGGCCTCTTCTTCTTCAGAC +
Preference number: 4 (lower is better)
Translates to: TSFPVRLLGRPGPAVFLSPFNSS*ASSSSD
Trigger: GTCTGAAGAAGAAGAGGCCCAAGAAGAGTTAAAAGG...ACTCAAGAAGACTGCTGGGCCTGGACGACCTAAGAGACGGACTGGAAATGAAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS-3UTR CCA 90 bp ACTAAAGCCCAGTCTCCTGGAGAGGATTCTTCCGTCCGGTTCCTGCCACGTAGCGAATCACTTGTTAAATaGTGTATTCCTGAAGCATCT +
Preference number: 4 (lower is better)
Translates to: TKAQSPGEDSSVRFLPRSESLVK*CIPEAS
Trigger: AGATGCTTCAGGAATACACCATTTAACAAGTGATTC...GCTACGTGGCAGGAACCGGACGGAAGAATCCTCTCCAGGAGACTGGGCTTTAGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR TCA 90 bp CAGGTAGTCAAGGTCATCTTCAGCTACATAGAGAATTGGAGGCTGGTAGGAGCTAGTCATATCACCCAGTaGACTCCAAGCATCCCATTT +
Preference number: 4 (lower is better)
Translates to: QVVKVIFSYIENWRLVGASHITQ*TPSIPF
Trigger: AAATGGGATGCTTGGAGTTCACTGGGTGATATGACT...AGCTCCTACCAGCCTCCAATTCTCTATGTAGCTGAAGATGACCTTGACTACCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR TCA 90 bp TTTCCAGTCCGTCTCTTAGGTCGTCCAGGCCCAGCAGTCTTCTTGAGTAAAAAGAACAGCTTTGGCATTTaGAGAGGTCAGAACATTACC +
Preference number: 4 (lower is better)
Translates to: FPVRLLGRPGPAVFLSKKNSFGI*RGQNIT
Trigger: GGTAATGTTCTGACCTCTTCAAATGCCAAAGCTGTT...CTTTTTACTCAAGAAGACTGCTGGGCCTGGACGACCTAAGAGACGGACTGGAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS-3UTR TCA 90 bp TTTCCAGTCCGTCTCTTAGGTCGTCCAGGCCCAGCAGTCTTCTTGAGTAAAAAGTCATTTCTATCTTGGTaGGCACAGACAATGGTGTGT +
Preference number: 4 (lower is better)
Translates to: FPVRLLGRPGPAVFLSKKSFLSW*AQTMVC
Trigger: ACACACCATTGTCTGTGCTCACCAAGATAGAAATGA...CTTTTTACTCAAGAAGACTGCTGGGCCTGGACGACCTAAGAGACGGACTGGAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS-3UTR TCA 90 bp ACTTCATTTCCAGTCCGTCTCTTAGGTCGTCCAGGCCCAGCAGTCTTCTTGAGTAAATGTGCCAACCACTaGGCAATAAAAGGCCATATA +
Preference number: 4 (lower is better)
Translates to: TSFPVRLLGRPGPAVFLSKCANH*AIKGHI
Trigger: TATATGGCCTTTTATTGCTCAGTGGTTGGCACATTT...ACTCAAGAAGACTGCTGGGCCTGGACGACCTAAGAGACGGACTGGAAATGAAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS-3UTR GCA 90 bp TTTCCAGTCCGTCTCTTAGGTCGTCCAGGCCCAGCAGTCTTCTTGAGTAAAAAGACAGGGTCCTTCAGTTaGCTGTTTGTAGAAGCTATA +
Preference number: 4 (lower is better)
Translates to: FPVRLLGRPGPAVFLSKKTGSFS*LFVEAI
Trigger: TATAGCTTCTACAAACAGGCAACTGAAGGACCCTGT...CTTTTTACTCAAGAAGACTGCTGGGCCTGGACGACCTAAGAGACGGACTGGAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS-3UTR GCA 90 bp ACTTCATTTCCAGTCCGTCTCTTAGGTCGTCCAGGCCCAGCAGTCTTCTTGAGTAATGGACCTATAACATaGAGCAACTCTTCCACTTTC +
Preference number: 4 (lower is better)
Translates to: TSFPVRLLGRPGPAVFLSNGPIT*SNSSTF
Trigger: GAAAGTGGAAGAGTTGCTGCATGTTATAGGTCCATT...ACTCAAGAAGACTGCTGGGCCTGGACGACCTAAGAGACGGACTGGAAATGAAGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS-3UTR GCA 90 bp TTTCCAGTCCGTCTCTTAGGTCGTCCAGGCCCAGCAGTCTTCTTGAGTAAAAAGTTTTCTTATCATCACTaGCGCTCTGTTCTGCTCCTT +
Preference number: 4 (lower is better)
Translates to: FPVRLLGRPGPAVFLSKKFSYHH*RSVLLL
Trigger: AAGGAGCAGAACAGAGCGGCAGTGATGATAAGAAAA...CTTTTTACTCAAGAAGACTGCTGGGCCTGGACGACCTAAGAGACGGACTGGAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS-3UTR GCA 90 bp TTTCCAGTCCGTCTCTTAGGTCGTCCAGGCCCAGCAGTCTTCTTGAGTAAAAAGACATTTTCCCAATGCTaGCATTTCCAGGAGATTGCT +
Preference number: 4 (lower is better)
Translates to: FPVRLLGRPGPAVFLSKKTFSQC*HFQEIA
Trigger: AGCAATCTCCTGGAAATGGCAGCATTGGGAAAATGT...CTTTTTACTCAAGAAGACTGCTGGGCCTGGACGACCTAAGAGACGGACTGGAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS-3UTR GCA 90 bp TTTCCAGTCCGTCTCTTAGGTCGTCCAGGCCCAGCAGTCTTCTTGAGTAAAAAGTCCACATTTTCCCAATaGTGCCATTTCCAGGAGATT +
Preference number: 4 (lower is better)
Translates to: FPVRLLGRPGPAVFLSKKSTFSQ*CHFQEI
Trigger: AATCTCCTGGAAATGGCAGCATTGGGAAAATGTGGA...CTTTTTACTCAAGAAGACTGCTGGGCCTGGACGACCTAAGAGACGGACTGGAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS-3UTR GCA 90 bp TTTCCAGTCCGTCTCTTAGGTCGTCCAGGCCCAGCAGTCTTCTTGAGTAAAAAGTTCTGCATGTCCTCCTaGAATCTAATGAGCACAAGA +
Preference number: 4 (lower is better)
Translates to: FPVRLLGRPGPAVFLSKKFCMSS*NLMSTR
Trigger: TCTTGTGCTCATTAGATTGCAGGAGGACATGCAGAA...CTTTTTACTCAAGAAGACTGCTGGGCCTGGACGACCTAAGAGACGGACTGGAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS-3UTR GCA 90 bp ACTTCATTTCCAGTCCGTCTCTTAGGTCGTCCAGGCCCAGCAGTCTTCTTGAGTAAAGATAATTTCGCCTaGGAAGCAGTTAGTGTTTCC +
Preference number: 4 (lower is better)
Translates to: TSFPVRLLGRPGPAVFLSKDNFA*EAVSVS
Trigger: GGAAACACTAACTGCTTCGCAGGCGAAATTATCTTT...ACTCAAGAAGACTGCTGGGCCTGGACGACCTAAGAGACGGACTGGAAATGAAGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS-3UTR CCA 90 bp TCCAGCTCATCACCTAATATTCTGCCACCAGATAAAGCACTGTTGTGTAATGGTCGGCCGCCTCAAATCTaGTTTCATACACTGACGGTG +
Preference number: 4 (lower is better)
Translates to: SSSSPNILPPDKALLCNGRPPQI*FHTLTV
Trigger: CACCGTCAGTGTATGAAACCAGATTTGAGGCGGCCG...ACCATTACACAACAGTGCTTTATCTGGTGGCAGAATATTAGGTGATGAGCTGGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR CCA 90 bp TTTCCAGTCCGTCTCTTAGGTCGTCCAGGCCCAGCAGTCTTCTTGAGTAAAAAGCCTTTTAACTCTTCTTaGGCCTCTTCTTCTTCAGAC +
Preference number: 4 (lower is better)
Translates to: FPVRLLGRPGPAVFLSKKPFNSS*ASSSSD
Trigger: GTCTGAAGAAGAAGAGGCCCAAGAAGAGTTAAAAGG...CTTTTTACTCAAGAAGACTGCTGGGCCTGGACGACCTAAGAGACGGACTGGAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS-3UTR CCA 90 bp GAACCTGGAGGCAGGAGCAATAGAGACCATGAAGGGGTGCTGCTTACTGGCTTGGAATCACTTGTTAAATaGTGTATTCCTGAAGCATCT +
Preference number: 4 (lower is better)
Translates to: EPGGRSNRDHEGVLLTGLESLVK*CIPEAS
Trigger: AGATGCTTCAGGAATACACCATTTAACAAGTGATTC...CAAGCCAGTAAGCAGCACCCCTTCATGGTCTCTATTGCTCCTGCCTCCAGGTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228050.2
CDS-3UTR CCA 90 bp CAGGTAGTCAAGGTCATCTTCAGCTACATAGAGAATTGGAGGCTGGTAGGAGCTTCCTTCGCTCAAATGTaGTATTCTATTCCCTCTCCC +
Preference number: 4 (lower is better)
Translates to: QVVKVIFSYIENWRLVGASFAQM*YSIPSP
Trigger: GGGAGAGGGAATAGAATACCACATTTGAGCGAAGGA...AGCTCCTACCAGCCTCCAATTCTCTATGTAGCTGAAGATGACCTTGACTACCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000114526.9
ENSMUST00000226571.2
ENSMUST00000227663.2
CDS-3UTR TCA 90 bp CAGGTAGTCAAGGTCATCTTCAGCTACATAGAGAATTGGAGGCTGGTAGGAGCTTCATTTCTATCTTGGTaGGCACAGACAATGGTGTGT +
Preference number: 4 (lower is better)
Translates to: QVVKVIFSYIENWRLVGASFLSW*AQTMVC
Trigger: ACACACCATTGTCTGTGCTCACCAAGATAGAAATGA...AGCTCCTACCAGCCTCCAATTCTCTATGTAGCTGAAGATGACCTTGACTACCTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR TCA 90 bp AAGCAAAAGCCAGTAGATCATTTTAGGCATATCAACCAAGTTGTGATACACAAGCTACTCTCCCTCTCCTaGCACTGGAGAAGTCCTCGC +
Preference number: 4 (lower is better)
Translates to: KQKPVDHFRHINQVVIHKLLSLS*HWRSPR
Trigger: GCGAGGACTTCTCCAGTGTCAGGAGAGGGAGAGTAG...CTTGTGTATCACAACTTGGTTGATATGCCTAAAATGATCTACTGGCTTTTGCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114529.10
ENSMUST00000228050.2
CDS-3UTR TCA 90 bp TTTCCAGTCCGTCTCTTAGGTCGTCCAGGCCCAGCAGTCTTCTTGAGTAAAAAGAAATGTGCCAACCACTaGGCAATAAAAGGCCATATA +
Preference number: 4 (lower is better)
Translates to: FPVRLLGRPGPAVFLSKKKCANH*AIKGHI
Trigger: TATATGGCCTTTTATTGCTCAGTGGTTGGCACATTT...CTTTTTACTCAAGAAGACTGCTGGGCCTGGACGACCTAAGAGACGGACTGGAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS-3UTR TCA 90 bp AATACGTTTTCATTTTATTGCAAAGCACCCTATGAAGCAGACAGTAGATATCCTTCCCTCTCCCTCTCCTaGCACTGGAGAAGTCCTCGC +
Preference number: 4 (lower is better)
Translates to: NTFSFYCKAPYEADSRYPSLSLS*HWRSPR
Trigger: GCGAGGACTTCTCCAGTGTCAGGAGAGGGAGAGGGA...AGGATATCTACTGTCTGCTTCATAGGGTGCTTTGCAATAAAATGAAAACGTATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114526.9
ENSMUST00000226571.2
ENSMUST00000227663.2
CDS-3UTR GCA 90 bp TTTCCAGTCCGTCTCTTAGGTCGTCCAGGCCCAGCAGTCTTCTTGAGTAAAAAGAATGGACCTATAACATaGAGCAACTCTTCCACTTTC +
Preference number: 4 (lower is better)
Translates to: FPVRLLGRPGPAVFLSKKNGPIT*SNSSTF
Trigger: GAAAGTGGAAGAGTTGCTGCATGTTATAGGTCCATT...CTTTTTACTCAAGAAGACTGCTGGGCCTGGACGACCTAAGAGACGGACTGGAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS-3UTR GCA 90 bp ACTTCATTTCCAGTCCGTCTCTTAGGTCGTCCAGGCCCAGCAGTCTTCTTGAGTAGTCAGAACTCTTGCTaGTCTTTTTGTCTTCTACAA +
Preference number: 4 (lower is better)
Translates to: TSFPVRLLGRPGPAVFLSSQNSC*SFCLLQ
Trigger: TTGTAGAAGACAAAAAGAGCAGCAAGAGTTCTGACT...ACTCAAGAAGACTGCTGGGCCTGGACGACCTAAGAGACGGACTGGAAATGAAGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS-3UTR GCA 90 bp ACTTCATTTCCAGTCCGTCTCTTAGGTCGTCCAGGCCCAGCAGTCTTCTTGAGTTCAAGTCAGAACTCTTaGTGCTCTTTTTGTCTTCTA +
Preference number: 4 (lower is better)
Translates to: TSFPVRLLGRPGPAVFLSSSQNS*CSFCLL
Trigger: TAGAAGACAAAAAGAGCAGCAAGAGTTCTGACTTGA...ACTCAAGAAGACTGCTGGGCCTGGACGACCTAAGAGACGGACTGGAAATGAAGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS-3UTR GCA 90 bp ACTTCATTTCCAGTCCGTCTCTTAGGTCGTCCAGGCCCAGCAGTCTTCTTGAGTACTATCACTGCTCTCTaGTTTACCATTAACAGCTTT +
Preference number: 4 (lower is better)
Translates to: TSFPVRLLGRPGPAVFLSTITAL*FTINSF
Trigger: AAAGCTGTTAATGGTAAAGCAGAGAGCAGTGATAGT...ACTCAAGAAGACTGCTGGGCCTGGACGACCTAAGAGACGGACTGGAAATGAAGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS-3UTR GCA 90 bp TTTCCAGTCCGTCTCTTAGGTCGTCCAGGCCCAGCAGTCTTCTTGAGTAAAAAGTCTTCTTGTCCAAATTaGTCCATAGAGTCACAGTAC +
Preference number: 4 (lower is better)
Translates to: FPVRLLGRPGPAVFLSKKSSCPN*SIESQY
Trigger: GTACTGTGACTCTATGGAGCAATTTGGACAAGAAGA...CTTTTTACTCAAGAAGACTGCTGGGCCTGGACGACCTAAGAGACGGACTGGAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS-3UTR GCA 90 bp CAGGTAGTCAAGGTCATCTTCAGCTACATAGAGAATTGGAGGCTGGTAGGAGCTACATTTTCCCAATGCTaGCATTTCCAGGAGATTGCT +
Preference number: 4 (lower is better)
Translates to: QVVKVIFSYIENWRLVGATFSQC*HFQEIA
Trigger: AGCAATCTCCTGGAAATGGCAGCATTGGGAAAATGT...AGCTCCTACCAGCCTCCAATTCTCTATGTAGCTGAAGATGACCTTGACTACCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR GCA 90 bp AACTCAGGTAGTCAAGGTCATCTTCAGCTACATAGAGAATTGGAGGCTGGTAGGGCCTTTTCCTTTGACTaGTACCATCCACATTTTCCC +
Preference number: 4 (lower is better)
Translates to: NSGSQGHLQLHRELEAGRAFSFD*YHPHFP
Trigger: GGGAAAATGTGGATGGTAGCAGTCAAAGGAAAAGGC...CCTACCAGCCTCCAATTCTCTATGTAGCTGAAGATGACCTTGACTACCTGAGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR GCA 90 bp AAACTGAGATTTTCTTCTGAATTCCACTTCATTTCCAGTCCGTCTCTTAGGTCGAGCACAAGAGCGATCTaGTCATTGAGGCTGCCTCTG +
Preference number: 4 (lower is better)
Translates to: KLRFSSEFHFISSPSLRSSTRAI*SLRLPL
Trigger: CAGAGGCAGCCTCAATGAGCAGATCGCTCTTGTGCT...CGACCTAAGAGACGGACTGGAAATGAAGTGGAATTCAGAAGAAAATCTCAGTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS-3UTR GCA 90 bp CAGGTAGTCAAGGTCATCTTCAGCTACATAGAGAATTGGAGGCTGGTAGGAGCTTTCTGCATGTCCTCCTaGAATCTAATGAGCACAAGA +
Preference number: 4 (lower is better)
Translates to: QVVKVIFSYIENWRLVGAFCMSS*NLMSTR
Trigger: TCTTGTGCTCATTAGATTGCAGGAGGACATGCAGAA...AGCTCCTACCAGCCTCCAATTCTCTATGTAGCTGAAGATGACCTTGACTACCTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR GCA 90 bp TTTCCAGTCCGTCTCTTAGGTCGTCCAGGCCCAGCAGTCTTCTTGAGTAAAAAGAAAGATAATTTCGCCTaGGAAGCAGTTAGTGTTTCC +
Preference number: 4 (lower is better)
Translates to: FPVRLLGRPGPAVFLSKKKDNFA*EAVSVS
Trigger: GGAAACACTAACTGCTTCGCAGGCGAAATTATCTTT...CTTTTTACTCAAGAAGACTGCTGGGCCTGGACGACCTAAGAGACGGACTGGAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS-3UTR CCA 90 bp AAACTGAGATTTTCTTCTGAATTCCACTTCATTTCCAGTCCGTCTCTTAGGTCGCGGCCGCCTCAAATCTaGTTTCATACACTGACGGTG +
Preference number: 4 (lower is better)
Translates to: KLRFSSEFHFISSPSLRSRPPQI*FHTLTV
Trigger: CACCGTCAGTGTATGAAACCAGATTTGAGGCGGCCG...CGACCTAAGAGACGGACTGGAAATGAAGTGGAATTCAGAAGAAAATCTCAGTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS-3UTR CCA 90 bp ATCTCCTGCCTGCCATTTAAGATTACTGTATATGAACCACTGTTGCTTCTTGCTTTTTTCGGCAAACTCTaGATCACCTTCACGGCCGCC +
Preference number: 4 (lower is better)
Translates to: ISCLPFKITVYEPLLLLAFFGKL*ITFTAA
Trigger: GGCGGCCGTGAAGGTGATCCAGAGTTTGCCGAAAAA...AGCAAGAAGCAACAGTGGTTCATATACAGTAATCTTAAATGGCAGGCAGGAGAT
46% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 2 transcripts:
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR CCA 90 bp AAACTGAGATTTTCTTCTGAATTCCACTTCATTTCCAGTCCGTCTCTTAGGTCGTTTTTCGGCAAACTCTaGATCACCTTCACGGCCGCC +
Preference number: 4 (lower is better)
Translates to: KLRFSSEFHFISSPSLRSFFGKL*ITFTAA
Trigger: GGCGGCCGTGAAGGTGATCCAGAGTTTGCCGAAAAA...CGACCTAAGAGACGGACTGGAAATGAAGTGGAATTCAGAAGAAAATCTCAGTTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS-3UTR CCA 90 bp CAGGTAGTCAAGGTCATCTTCAGCTACATAGAGAATTGGAGGCTGGTAGGAGCTCCTTTTAACTCTTCTTaGGCCTCTTCTTCTTCAGAC +
Preference number: 4 (lower is better)
Translates to: QVVKVIFSYIENWRLVGAPFNSS*ASSSSD
Trigger: GTCTGAAGAAGAAGAGGCCCAAGAAGAGTTAAAAGG...AGCTCCTACCAGCCTCCAATTCTCTATGTAGCTGAAGATGACCTTGACTACCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR CCA 90 bp ATCTCCTGCCTGCCATTTAAGATTACTGTATATGAACCACTGTTGCTTCTTGCTGGTGAGCACAGACAATaGTGTGTCCTGTCTGCTGAG +
Preference number: 4 (lower is better)
Translates to: ISCLPFKITVYEPLLLLAGEHRQ*CVLSAE
Trigger: CTCAGCAGACAGGACACACCATTGTCTGTGCTCACC...AGCAAGAAGCAACAGTGGTTCATATACAGTAATCTTAAATGGCAGGCAGGAGAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR CCA 90 bp AAACTGAGATTTTCTTCTGAATTCCACTTCATTTCCAGTCCGTCTCTTAGGTCGGGTGAGCACAGACAATaGTGTGTCCTGTCTGCTGAG +
Preference number: 4 (lower is better)
Translates to: KLRFSSEFHFISSPSLRSGEHRQ*CVLSAE
Trigger: CTCAGCAGACAGGACACACCATTGTCTGTGCTCACC...CGACCTAAGAGACGGACTGGAAATGAAGTGGAATTCAGAAGAAAATCTCAGTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS-3UTR CCA 90 bp AAACTGAGATTTTCTTCTGAATTCCACTTCATTTCCAGTCCGTCTCTTAGGTCGCTACTTGCCGACCCTTaGGTCCTTCGCTCAAATGTG +
Preference number: 4 (lower is better)
Translates to: KLRFSSEFHFISSPSLRSLLADP*VLRSNV
Trigger: CACATTTGAGCGAAGGACCCAAGGGTCGGCAAGTAG...CGACCTAAGAGACGGACTGGAAATGAAGTGGAATTCAGAAGAAAATCTCAGTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
3UTR CAA 72 bp TCAGGTAGTCAAGGTCATCTTCAGCTACATAGAGAATaGGAGGCTGGTAGGAGCTACCAAAACTCTGTCTCA +
Preference number: 4 (lower is better)
Translates to: SGSQGHLQLHRE*EAGRSYQNSVS
Trigger: TGAGACAGAGTTTTGGTAGCTCCTACCAGCCTCCAATTCTCTATGTAGCTGAAGATGACCTTGACTACCTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR TCA 90 bp AACTCAGGTAGTCAAGGTCATCTTCAGCTACATAGAGAATTGGAGGCTGGTAGGTCATTTCTATCTTGGTaGGCACAGACAATGGTGTGT +
Preference number: 4 (lower is better)
Translates to: NSGSQGHLQLHRELEAGRSFLSW*AQTMVC
Trigger: ACACACCATTGTCTGTGCTCACCAAGATAGAAATGA...CCTACCAGCCTCCAATTCTCTATGTAGCTGAAGATGACCTTGACTACCTGAGTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR TCA 90 bp CAGGTAGTCAAGGTCATCTTCAGCTACATAGAGAATTGGAGGCTGGTAGGAGCTAAATGTGCCAACCACTaGGCAATAAAAGGCCATATA +
Preference number: 4 (lower is better)
Translates to: QVVKVIFSYIENWRLVGAKCANH*AIKGHI
Trigger: TATATGGCCTTTTATTGCTCAGTGGTTGGCACATTT...AGCTCCTACCAGCCTCCAATTCTCTATGTAGCTGAAGATGACCTTGACTACCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR GCA 90 bp CAGGTAGTCAAGGTCATCTTCAGCTACATAGAGAATTGGAGGCTGGTAGGAGCTAATGGACCTATAACATaGAGCAACTCTTCCACTTTC +
Preference number: 4 (lower is better)
Translates to: QVVKVIFSYIENWRLVGANGPIT*SNSSTF
Trigger: GAAAGTGGAAGAGTTGCTGCATGTTATAGGTCCATT...AGCTCCTACCAGCCTCCAATTCTCTATGTAGCTGAAGATGACCTTGACTACCTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR GCA 90 bp TTTCCAGTCCGTCTCTTAGGTCGTCCAGGCCCAGCAGTCTTCTTGAGTAAAAAGAGTCAGAACTCTTGCTaGTCTTTTTGTCTTCTACAA +
Preference number: 4 (lower is better)
Translates to: FPVRLLGRPGPAVFLSKKSQNSC*SFCLLQ
Trigger: TTGTAGAAGACAAAAAGAGCAGCAAGAGTTCTGACT...CTTTTTACTCAAGAAGACTGCTGGGCCTGGACGACCTAAGAGACGGACTGGAAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS-3UTR GCA 90 bp TTTCCAGTCCGTCTCTTAGGTCGTCCAGGCCCAGCAGTCTTCTTGAGTAAAAAGTCAAGTCAGAACTCTTaGTGCTCTTTTTGTCTTCTA +
Preference number: 4 (lower is better)
Translates to: FPVRLLGRPGPAVFLSKKSSQNS*CSFCLL
Trigger: TAGAAGACAAAAAGAGCAGCAAGAGTTCTGACTTGA...CTTTTTACTCAAGAAGACTGCTGGGCCTGGACGACCTAAGAGACGGACTGGAAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS-3UTR GCA 90 bp TTTCCAGTCCGTCTCTTAGGTCGTCCAGGCCCAGCAGTCTTCTTGAGTAAAAAGACTATCACTGCTCTCTaGTTTACCATTAACAGCTTT +
Preference number: 4 (lower is better)
Translates to: FPVRLLGRPGPAVFLSKKTITAL*FTINSF
Trigger: AAAGCTGTTAATGGTAAAGCAGAGAGCAGTGATAGT...CTTTTTACTCAAGAAGACTGCTGGGCCTGGACGACCTAAGAGACGGACTGGAAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS-3UTR GCA 90 bp AACTCAGGTAGTCAAGGTCATCTTCAGCTACATAGAGAATTGGAGGCTGGTAGGTTTTCTTATCATCACTaGCGCTCTGTTCTGCTCCTT +
Preference number: 4 (lower is better)
Translates to: NSGSQGHLQLHRELEAGRFSYHH*RSVLLL
Trigger: AAGGAGCAGAACAGAGCGGCAGTGATGATAAGAAAA...CCTACCAGCCTCCAATTCTCTATGTAGCTGAAGATGACCTTGACTACCTGAGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR GCA 90 bp CAGGTAGTCAAGGTCATCTTCAGCTACATAGAGAATTGGAGGCTGGTAGGAGCTTCTTCTTGTCCAAATTaGTCCATAGAGTCACAGTAC +
Preference number: 4 (lower is better)
Translates to: QVVKVIFSYIENWRLVGASSCPN*SIESQY
Trigger: GTACTGTGACTCTATGGAGCAATTTGGACAAGAAGA...AGCTCCTACCAGCCTCCAATTCTCTATGTAGCTGAAGATGACCTTGACTACCTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR GCA 90 bp AACTCAGGTAGTCAAGGTCATCTTCAGCTACATAGAGAATTGGAGGCTGGTAGGTCCACATTTTCCCAATaGTGCCATTTCCAGGAGATT +
Preference number: 4 (lower is better)
Translates to: NSGSQGHLQLHRELEAGRSTFSQ*CHFQEI
Trigger: AATCTCCTGGAAATGGCAGCATTGGGAAAATGTGGA...CCTACCAGCCTCCAATTCTCTATGTAGCTGAAGATGACCTTGACTACCTGAGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR GCA 90 bp AAGCAAAAGCCAGTAGATCATTTTAGGCATATCAACCAAGTTGTGATACACAAGGGTGCGGTGCTCCACTaGTACTTCTGCCATCTTCTC +
Preference number: 4 (lower is better)
Translates to: KQKPVDHFRHINQVVIHKGAVLH*YFCHLL
Trigger: GAGAAGATGGCAGAAGTAGCAGTGGAGCACCGCACC...CTTGTGTATCACAACTTGGTTGATATGCCTAAAATGATCTACTGGCTTTTGCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR GCA 90 bp AATACGTTTTCATTTTATTGCAAAGCACCCTATGAAGCAGACAGTAGATATCCTCCTCCACTTCCTACTTaGCGACCCTTGGGTCCTTCG +
Preference number: 4 (lower is better)
Translates to: NTFSFYCKAPYEADSRYPPPLPT*RPLGPS
Trigger: CGAAGGACCCAAGGGTCGGCAAGTAGGAAGTGGAGG...AGGATATCTACTGTCTGCTTCATAGGGTGCTTTGCAATAAAATGAAAACGTATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR CCA 90 bp AAACTGAGATTTTCTTCTGAATTCCACTTCATTTCCAGTCCGTCTCTTAGGTCGCATCTTCACTGCTTCTaGTGCTCCGGGAAGAATCAG +
Preference number: 4 (lower is better)
Translates to: KLRFSSEFHFISSPSLRSHLHCF*CSGKNQ
Trigger: CTGATTCTTCCCGGAGCACCAGAAGCAGTGAAGATG...CGACCTAAGAGACGGACTGGAAATGAAGTGGAATTCAGAAGAAAATCTCAGTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS-3UTR CCA 90 bp ACTTCATTTCCAGTCCGTCTCTTAGGTCGTCCAGGCCCAGCAGTCTTCTTGAGTGAATCACTTGTTAAATaGTGTATTCCTGAAGCATCT +
Preference number: 4 (lower is better)
Translates to: TSFPVRLLGRPGPAVFLSESLVK*CIPEAS
Trigger: AGATGCTTCAGGAATACACCATTTAACAAGTGATTC...ACTCAAGAAGACTGCTGGGCCTGGACGACCTAAGAGACGGACTGGAAATGAAGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS-3UTR TCA 90 bp AACTCAGGTAGTCAAGGTCATCTTCAGCTACATAGAGAATTGGAGGCTGGTAGGAAATGTGCCAACCACTaGGCAATAAAAGGCCATATA +
Preference number: 4 (lower is better)
Translates to: NSGSQGHLQLHRELEAGRKCANH*AIKGHI
Trigger: TATATGGCCTTTTATTGCTCAGTGGTTGGCACATTT...CCTACCAGCCTCCAATTCTCTATGTAGCTGAAGATGACCTTGACTACCTGAGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR GCA 90 bp AACTCAGGTAGTCAAGGTCATCTTCAGCTACATAGAGAATTGGAGGCTGGTAGGAATGGACCTATAACATaGAGCAACTCTTCCACTTTC +
Preference number: 4 (lower is better)
Translates to: NSGSQGHLQLHRELEAGRNGPIT*SNSSTF
Trigger: GAAAGTGGAAGAGTTGCTGCATGTTATAGGTCCATT...CCTACCAGCCTCCAATTCTCTATGTAGCTGAAGATGACCTTGACTACCTGAGTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR GCA 90 bp AACTCAGGTAGTCAAGGTCATCTTCAGCTACATAGAGAATTGGAGGCTGGTAGGTCTTCTTGTCCAAATTaGTCCATAGAGTCACAGTAC +
Preference number: 4 (lower is better)
Translates to: NSGSQGHLQLHRELEAGRSSCPN*SIESQY
Trigger: GTACTGTGACTCTATGGAGCAATTTGGACAAGAAGA...CCTACCAGCCTCCAATTCTCTATGTAGCTGAAGATGACCTTGACTACCTGAGTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR GCA 90 bp AATACGTTTTCATTTTATTGCAAAGCACCCTATGAAGCAGACAGTAGATATCCTGGTGCGGTGCTCCACTaGTACTTCTGCCATCTTCTC +
Preference number: 4 (lower is better)
Translates to: NTFSFYCKAPYEADSRYPGAVLH*YFCHLL
Trigger: GAGAAGATGGCAGAAGTAGCAGTGGAGCACCGCACC...AGGATATCTACTGTCTGCTTCATAGGGTGCTTTGCAATAAAATGAAAACGTATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR CCA 90 bp AAGCAAAAGCCAGTAGATCATTTTAGGCATATCAACCAAGTTGTGATACACAAGCGGCCGCCTCAAATCTaGTTTCATACACTGACGGTG +
Preference number: 4 (lower is better)
Translates to: KQKPVDHFRHINQVVIHKRPPQI*FHTLTV
Trigger: CACCGTCAGTGTATGAAACCAGATTTGAGGCGGCCG...CTTGTGTATCACAACTTGGTTGATATGCCTAAAATGATCTACTGGCTTTTGCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR CCA 90 bp AAGCAAAAGCCAGTAGATCATTTTAGGCATATCAACCAAGTTGTGATACACAAGTTTTTCGGCAAACTCTaGATCACCTTCACGGCCGCC +
Preference number: 4 (lower is better)
Translates to: KQKPVDHFRHINQVVIHKFFGKL*ITFTAA
Trigger: GGCGGCCGTGAAGGTGATCCAGAGTTTGCCGAAAAA...CTTGTGTATCACAACTTGGTTGATATGCCTAAAATGATCTACTGGCTTTTGCTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR CCA 90 bp TTTCCAGTCCGTCTCTTAGGTCGTCCAGGCCCAGCAGTCTTCTTGAGTAAAAAGATTTCATTTGTTGGTTaGAATGATCCATTTTTCGGC +
Preference number: 4 (lower is better)
Translates to: FPVRLLGRPGPAVFLSKKISFVG*NDPFFG
Trigger: GCCGAAAAATGGATCATTCCAACCAACAAATGAAAT...CTTTTTACTCAAGAAGACTGCTGGGCCTGGACGACCTAAGAGACGGACTGGAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS-3UTR CCA 90 bp CCACCCCCAACACGCCTCTTTCACATAAACATTGTTTGGGCTGAAGGCCATTTGATTTCATTTGTTGGTTaGAATGATCCATTTTTCGGC +
Preference number: 4 (lower is better)
Translates to: PPPTRLFHINIVWAEGHLISFVG*NDPFFG
Trigger: GCCGAAAAATGGATCATTCCAACCAACAAATGAAAT...CAAATGGCCTTCAGCCCAAACAATGTTTATGTGAAAGAGGCGTGTTGGGGGTGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR CCA 90 bp AAGCAAAAGCCAGTAGATCATTTTAGGCATATCAACCAAGTTGTGATACACAAGGGTGAGCACAGACAATaGTGTGTCCTGTCTGCTGAG +
Preference number: 4 (lower is better)
Translates to: KQKPVDHFRHINQVVIHKGEHRQ*CVLSAE
Trigger: CTCAGCAGACAGGACACACCATTGTCTGTGCTCACC...CTTGTGTATCACAACTTGGTTGATATGCCTAAAATGATCTACTGGCTTTTGCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR CCA 90 bp TTTCCAGTCCGTCTCTTAGGTCGTCCAGGCCCAGCAGTCTTCTTGAGTAAAAAGGAATCACTTGTTAAATaGTGTATTCCTGAAGCATCT +
Preference number: 4 (lower is better)
Translates to: FPVRLLGRPGPAVFLSKKESLVK*CIPEAS
Trigger: AGATGCTTCAGGAATACACCATTTAACAAGTGATTC...CTTTTTACTCAAGAAGACTGCTGGGCCTGGACGACCTAAGAGACGGACTGGAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS-3UTR CCA 90 bp AACTCAGGTAGTCAAGGTCATCTTCAGCTACATAGAGAATTGGAGGCTGGTAGGTCCTTCGCTCAAATGTaGTATTCTATTCCCTACTCT +
Preference number: 4 (lower is better)
Translates to: NSGSQGHLQLHRELEAGRSFAQM*YSIPYS
Trigger: AGAGTAGGGAATAGAATACCACATTTGAGCGAAGGA...CCTACCAGCCTCCAATTCTCTATGTAGCTGAAGATGACCTTGACTACCTGAGTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114529.10
ENSMUST00000228050.2
CDS-3UTR CCA 90 bp AAGCAAAAGCCAGTAGATCATTTTAGGCATATCAACCAAGTTGTGATACACAAGCTACTTGCCGACCCTTaGGTCCTTCGCTCAAATGTG +
Preference number: 4 (lower is better)
Translates to: KQKPVDHFRHINQVVIHKLLADP*VLRSNV
Trigger: CACATTTGAGCGAAGGACCCAAGGGTCGGCAAGTAG...CTTGTGTATCACAACTTGGTTGATATGCCTAAAATGATCTACTGGCTTTTGCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR TCA 90 bp AATACGTTTTCATTTTATTGCAAAGCACCCTATGAAGCAGACAGTAGATATCCTCCAGAATCCAGGCCGTaGAAGTTTACAGGGTCCTTC +
Preference number: 4 (lower is better)
Translates to: NTFSFYCKAPYEADSRYPPESRP*KFTGSF
Trigger: GAAGGACCCTGTAAACTTTCACGGCCTGGATTCTGG...AGGATATCTACTGTCTGCTTCATAGGGTGCTTTGCAATAAAATGAAAACGTATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR TCA 90 bp AAACTGAGATTTTCTTCTGAATTCCACTTCATTTCCAGTCCGTCTCTTAGGTCGAGTCATATCACCCAGTaGACTCCAAGCATCCCATTT +
Preference number: 4 (lower is better)
Translates to: KLRFSSEFHFISSPSLRSSHITQ*TPSIPF
Trigger: AAATGGGATGCTTGGAGTTCACTGGGTGATATGACT...CGACCTAAGAGACGGACTGGAAATGAAGTGGAATTCAGAAGAAAATCTCAGTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS-3UTR TCA 90 bp TTTCGGACAGTTGTATCTCCTGCCTGCCATTTAAGATTACTGTATATGAACCACAGTCATATCACCCAGTaGACTCCAAGCATCCCATTT +
Preference number: 4 (lower is better)
Translates to: FRTVVSPACHLRLLYMNHSHITQ*TPSIPF
Trigger: AAATGGGATGCTTGGAGTTCACTGGGTGATATGACT...GTGGTTCATATACAGTAATCTTAAATGGCAGGCAGGAGATACAACTGTCCGAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR TCA 90 bp TCCAGCTCATCACCTAATATTCTGCCACCAGATAAAGCACTGTTGTGTAATGGTAACAGCTTTGGCATTTaGAGAGGTCAGAACATTACC +
Preference number: 4 (lower is better)
Translates to: SSSSPNILPPDKALLCNGNSFGI*RGQNIT
Trigger: GGTAATGTTCTGACCTCTTCAAATGCCAAAGCTGTT...ACCATTACACAACAGTGCTTTATCTGGTGGCAGAATATTAGGTGATGAGCTGGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR GCA 90 bp AACTCAGGTAGTCAAGGTCATCTTCAGCTACATAGAGAATTGGAGGCTGGTAGGAGTCAGAACTCTTGCTaGTCTTTTTGTCTTCTACAA +
Preference number: 4 (lower is better)
Translates to: NSGSQGHLQLHRELEAGRSQNSC*SFCLLQ
Trigger: TTGTAGAAGACAAAAAGAGCAGCAAGAGTTCTGACT...CCTACCAGCCTCCAATTCTCTATGTAGCTGAAGATGACCTTGACTACCTGAGTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR GCA 90 bp AACTCAGGTAGTCAAGGTCATCTTCAGCTACATAGAGAATTGGAGGCTGGTAGGACTATCACTGCTCTCTaGTTTACCATTAACAGCTTT +
Preference number: 4 (lower is better)
Translates to: NSGSQGHLQLHRELEAGRTITAL*FTINSF
Trigger: AAAGCTGTTAATGGTAAAGCAGAGAGCAGTGATAGT...CCTACCAGCCTCCAATTCTCTATGTAGCTGAAGATGACCTTGACTACCTGAGTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR GCA 90 bp TCCAGCTCATCACCTAATATTCTGCCACCAGATAAAGCACTGTTGTGTAATGGTACATTTTCCCAATGCTaGCATTTCCAGGAGATTGCT +
Preference number: 4 (lower is better)
Translates to: SSSSPNILPPDKALLCNGTFSQC*HFQEIA
Trigger: AGCAATCTCCTGGAAATGGCAGCATTGGGAAAATGT...ACCATTACACAACAGTGCTTTATCTGGTGGCAGAATATTAGGTGATGAGCTGGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR GCA 90 bp TCCAGCTCATCACCTAATATTCTGCCACCAGATAAAGCACTGTTGTGTAATGGTTCCACATTTTCCCAATaGTGCCATTTCCAGGAGATT +
Preference number: 4 (lower is better)
Translates to: SSSSPNILPPDKALLCNGSTFSQ*CHFQEI
Trigger: AATCTCCTGGAAATGGCAGCATTGGGAAAATGTGGA...ACCATTACACAACAGTGCTTTATCTGGTGGCAGAATATTAGGTGATGAGCTGGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR GCA 90 bp AAACTGAGATTTTCTTCTGAATTCCACTTCATTTCCAGTCCGTCTCTTAGGTCGGCCTTTTCCTTTGACTaGTACCATCCACATTTTCCC +
Preference number: 4 (lower is better)
Translates to: KLRFSSEFHFISSPSLRSAFSFD*YHPHFP
Trigger: GGGAAAATGTGGATGGTAGCAGTCAAAGGAAAAGGC...CGACCTAAGAGACGGACTGGAAATGAAGTGGAATTCAGAAGAAAATCTCAGTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS-3UTR GCA 90 bp AATACGTTTTCATTTTATTGCAAAGCACCCTATGAAGCAGACAGTAGATATCCTAGCACAAGAGCGATCTaGTCATTGAGGCTGCCTCTG +
Preference number: 4 (lower is better)
Translates to: NTFSFYCKAPYEADSRYPSTRAI*SLRLPL
Trigger: CAGAGGCAGCCTCAATGAGCAGATCGCTCTTGTGCT...AGGATATCTACTGTCTGCTTCATAGGGTGCTTTGCAATAAAATGAAAACGTATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR CCA 90 bp AATACGTTTTCATTTTATTGCAAAGCACCCTATGAAGCAGACAGTAGATATCCTTTTTTCGGCAAACTCTaGATCACCTTCACGGCCGCC +
Preference number: 4 (lower is better)
Translates to: NTFSFYCKAPYEADSRYPFFGKL*ITFTAA
Trigger: GGCGGCCGTGAAGGTGATCCAGAGTTTGCCGAAAAA...AGGATATCTACTGTCTGCTTCATAGGGTGCTTTGCAATAAAATGAAAACGTATT
42% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR CCA 90 bp CAGGTAGTCAAGGTCATCTTCAGCTACATAGAGAATTGGAGGCTGGTAGGAGCTATTTCATTTGTTGGTTaGAATGATCCATTTTTCGGC +
Preference number: 4 (lower is better)
Translates to: QVVKVIFSYIENWRLVGAISFVG*NDPFFG
Trigger: GCCGAAAAATGGATCATTCCAACCAACAAATGAAAT...AGCTCCTACCAGCCTCCAATTCTCTATGTAGCTGAAGATGACCTTGACTACCTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR CCA 90 bp AAACTGAGATTTTCTTCTGAATTCCACTTCATTTCCAGTCCGTCTCTTAGGTCGTCCTTCGCTCAAATGTaGTATTCTATTCCCTCTCCC +
Preference number: 4 (lower is better)
Translates to: KLRFSSEFHFISSPSLRSSFAQM*YSIPSP
Trigger: GGGAGAGGGAATAGAATACCACATTTGAGCGAAGGA...CGACCTAAGAGACGGACTGGAAATGAAGTGGAATTCAGAAGAAAATCTCAGTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000114526.9
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
CDS-3UTR TCA 90 bp AAACTGAGATTTTCTTCTGAATTCCACTTCATTTCCAGTCCGTCTCTTAGGTCGTCATTTCTATCTTGGTaGGCACAGACAATGGTGTGT +
Preference number: 4 (lower is better)
Translates to: KLRFSSEFHFISSPSLRSSFLSW*AQTMVC
Trigger: ACACACCATTGTCTGTGCTCACCAAGATAGAAATGA...CGACCTAAGAGACGGACTGGAAATGAAGTGGAATTCAGAAGAAAATCTCAGTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS-3UTR GCA 90 bp AAACTGAGATTTTCTTCTGAATTCCACTTCATTTCCAGTCCGTCTCTTAGGTCGACAGGGTCCTTCAGTTaGCTGTTTGTAGAAGCTATA +
Preference number: 4 (lower is better)
Translates to: KLRFSSEFHFISSPSLRSTGSFS*LFVEAI
Trigger: TATAGCTTCTACAAACAGGCAACTGAAGGACCCTGT...CGACCTAAGAGACGGACTGGAAATGAAGTGGAATTCAGAAGAAAATCTCAGTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS-3UTR GCA 90 bp AAACTGAGATTTTCTTCTGAATTCCACTTCATTTCCAGTCCGTCTCTTAGGTCGTTTTCTTATCATCACTaGCGCTCTGTTCTGCTCCTT +
Preference number: 4 (lower is better)
Translates to: KLRFSSEFHFISSPSLRSFSYHH*RSVLLL
Trigger: AAGGAGCAGAACAGAGCGGCAGTGATGATAAGAAAA...CGACCTAAGAGACGGACTGGAAATGAAGTGGAATTCAGAAGAAAATCTCAGTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS-3UTR GCA 90 bp TTTCGGACAGTTGTATCTCCTGCCTGCCATTTAAGATTACTGTATATGAACCACTTTTCTTATCATCACTaGCGCTCTGTTCTGCTCCTT +
Preference number: 4 (lower is better)
Translates to: FRTVVSPACHLRLLYMNHFSYHH*RSVLLL
Trigger: AAGGAGCAGAACAGAGCGGCAGTGATGATAAGAAAA...GTGGTTCATATACAGTAATCTTAAATGGCAGGCAGGAGATACAACTGTCCGAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR GCA 90 bp TCCAGCTCATCACCTAATATTCTGCCACCAGATAAAGCACTGTTGTGTAATGGTTCTTCTTGTCCAAATTaGTCCATAGAGTCACAGTAC +
Preference number: 4 (lower is better)
Translates to: SSSSPNILPPDKALLCNGSSCPN*SIESQY
Trigger: GTACTGTGACTCTATGGAGCAATTTGGACAAGAAGA...ACCATTACACAACAGTGCTTTATCTGGTGGCAGAATATTAGGTGATGAGCTGGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR GCA 90 bp AAACTGAGATTTTCTTCTGAATTCCACTTCATTTCCAGTCCGTCTCTTAGGTCGTCCACATTTTCCCAATaGTGCCATTTCCAGGAGATT +
Preference number: 4 (lower is better)
Translates to: KLRFSSEFHFISSPSLRSSTFSQ*CHFQEI
Trigger: AATCTCCTGGAAATGGCAGCATTGGGAAAATGTGGA...CGACCTAAGAGACGGACTGGAAATGAAGTGGAATTCAGAAGAAAATCTCAGTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS-3UTR CCA 90 bp AACTCAGGTAGTCAAGGTCATCTTCAGCTACATAGAGAATTGGAGGCTGGTAGGATTTCATTTGTTGGTTaGAATGATCCATTTTTCGGC +
Preference number: 4 (lower is better)
Translates to: NSGSQGHLQLHRELEAGRISFVG*NDPFFG
Trigger: GCCGAAAAATGGATCATTCCAACCAACAAATGAAAT...CCTACCAGCCTCCAATTCTCTATGTAGCTGAAGATGACCTTGACTACCTGAGTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR CCA 90 bp AAACTGAGATTTTCTTCTGAATTCCACTTCATTTCCAGTCCGTCTCTTAGGTCGCCTTTTAACTCTTCTTaGGCCTCTTCTTCTTCAGAC +
Preference number: 4 (lower is better)
Translates to: KLRFSSEFHFISSPSLRSPFNSS*ASSSSD
Trigger: GTCTGAAGAAGAAGAGGCCCAAGAAGAGTTAAAAGG...CGACCTAAGAGACGGACTGGAAATGAAGTGGAATTCAGAAGAAAATCTCAGTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS-3UTR TCA 90 bp AAGCAAAAGCCAGTAGATCATTTTAGGCATATCAACCAAGTTGTGATACACAAGAGTCATATCACCCAGTaGACTCCAAGCATCCCATTT +
Preference number: 4 (lower is better)
Translates to: KQKPVDHFRHINQVVIHKSHITQ*TPSIPF
Trigger: AAATGGGATGCTTGGAGTTCACTGGGTGATATGACT...CTTGTGTATCACAACTTGGTTGATATGCCTAAAATGATCTACTGGCTTTTGCTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR GCA 90 bp AAACTGAGATTTTCTTCTGAATTCCACTTCATTTCCAGTCCGTCTCTTAGGTCGAATGGACCTATAACATaGAGCAACTCTTCCACTTTC +
Preference number: 4 (lower is better)
Translates to: KLRFSSEFHFISSPSLRSNGPIT*SNSSTF
Trigger: GAAAGTGGAAGAGTTGCTGCATGTTATAGGTCCATT...CGACCTAAGAGACGGACTGGAAATGAAGTGGAATTCAGAAGAAAATCTCAGTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS-3UTR GCA 90 bp TCCAGCTCATCACCTAATATTCTGCCACCAGATAAAGCACTGTTGTGTAATGGTTCAAGTCAGAACTCTTaGTGCTCTTTTTGTCTTCTA +
Preference number: 4 (lower is better)
Translates to: SSSSPNILPPDKALLCNGSSQNS*CSFCLL
Trigger: TAGAAGACAAAAAGAGCAGCAAGAGTTCTGACTTGA...ACCATTACACAACAGTGCTTTATCTGGTGGCAGAATATTAGGTGATGAGCTGGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR GCA 90 bp AAACTGAGATTTTCTTCTGAATTCCACTTCATTTCCAGTCCGTCTCTTAGGTCGTCTTCTTGTCCAAATTaGTCCATAGAGTCACAGTAC +
Preference number: 4 (lower is better)
Translates to: KLRFSSEFHFISSPSLRSSSCPN*SIESQY
Trigger: GTACTGTGACTCTATGGAGCAATTTGGACAAGAAGA...CGACCTAAGAGACGGACTGGAAATGAAGTGGAATTCAGAAGAAAATCTCAGTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS-3UTR GCA 90 bp AAACTGAGATTTTCTTCTGAATTCCACTTCATTTCCAGTCCGTCTCTTAGGTCGAAAGATAATTTCGCCTaGGAAGCAGTTAGTGTTTCC +
Preference number: 4 (lower is better)
Translates to: KLRFSSEFHFISSPSLRSKDNFA*EAVSVS
Trigger: GGAAACACTAACTGCTTCGCAGGCGAAATTATCTTT...CGACCTAAGAGACGGACTGGAAATGAAGTGGAATTCAGAAGAAAATCTCAGTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS-3UTR GCA 90 bp ATCTCCTGCCTGCCATTTAAGATTACTGTATATGAACCACTGTTGCTTCTTGCTAAAGATAATTTCGCCTaGGAAGCAGTTAGTGTTTCC +
Preference number: 4 (lower is better)
Translates to: ISCLPFKITVYEPLLLLAKDNFA*EAVSVS
Trigger: GGAAACACTAACTGCTTCGCAGGCGAAATTATCTTT...AGCAAGAAGCAACAGTGGTTCATATACAGTAATCTTAAATGGCAGGCAGGAGAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR CCA 90 bp AAACTGAGATTTTCTTCTGAATTCCACTTCATTTCCAGTCCGTCTCTTAGGTCGTCCTTCGCTCAAATGTaGTATTCTATTCCCTACTCT +
Preference number: 4 (lower is better)
Translates to: KLRFSSEFHFISSPSLRSSFAQM*YSIPYS
Trigger: AGAGTAGGGAATAGAATACCACATTTGAGCGAAGGA...CGACCTAAGAGACGGACTGGAAATGAAGTGGAATTCAGAAGAAAATCTCAGTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000228050.2
CDS-3UTR CCA 90 bp TTTCGGACAGTTGTATCTCCTGCCTGCCATTTAAGATTACTGTATATGAACCACTCCTTCGCTCAAATGTaGTATTCTATTCCCTACTCT +
Preference number: 4 (lower is better)
Translates to: FRTVVSPACHLRLLYMNHSFAQM*YSIPYS
Trigger: AGAGTAGGGAATAGAATACCACATTTGAGCGAAGGA...GTGGTTCATATACAGTAATCTTAAATGGCAGGCAGGAGATACAACTGTCCGAAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228050.2
CDS-3UTR TCA 90 bp AATACGTTTTCATTTTATTGCAAAGCACCCTATGAAGCAGACAGTAGATATCCTAGTCATATCACCCAGTaGACTCCAAGCATCCCATTT +
Preference number: 4 (lower is better)
Translates to: NTFSFYCKAPYEADSRYPSHITQ*TPSIPF
Trigger: AAATGGGATGCTTGGAGTTCACTGGGTGATATGACT...AGGATATCTACTGTCTGCTTCATAGGGTGCTTTGCAATAAAATGAAAACGTATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR TCA 90 bp AAGCAAAAGCCAGTAGATCATTTTAGGCATATCAACCAAGTTGTGATACACAAGAACAGCTTTGGCATTTaGAGAGGTCAGAACATTACC +
Preference number: 4 (lower is better)
Translates to: KQKPVDHFRHINQVVIHKNSFGI*RGQNIT
Trigger: GGTAATGTTCTGACCTCTTCAAATGCCAAAGCTGTT...CTTGTGTATCACAACTTGGTTGATATGCCTAAAATGATCTACTGGCTTTTGCTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR TCA 90 bp AAGCAAAAGCCAGTAGATCATTTTAGGCATATCAACCAAGTTGTGATACACAAGTCATTTCTATCTTGGTaGGCACAGACAATGGTGTGT +
Preference number: 4 (lower is better)
Translates to: KQKPVDHFRHINQVVIHKSFLSW*AQTMVC
Trigger: ACACACCATTGTCTGTGCTCACCAAGATAGAAATGA...CTTGTGTATCACAACTTGGTTGATATGCCTAAAATGATCTACTGGCTTTTGCTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR GCA 90 bp AAGCAAAAGCCAGTAGATCATTTTAGGCATATCAACCAAGTTGTGATACACAAGACAGGGTCCTTCAGTTaGCTGTTTGTAGAAGCTATA +
Preference number: 4 (lower is better)
Translates to: KQKPVDHFRHINQVVIHKTGSFS*LFVEAI
Trigger: TATAGCTTCTACAAACAGGCAACTGAAGGACCCTGT...CTTGTGTATCACAACTTGGTTGATATGCCTAAAATGATCTACTGGCTTTTGCTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR GCA 90 bp AAGCAAAAGCCAGTAGATCATTTTAGGCATATCAACCAAGTTGTGATACACAAGTTTTCTTATCATCACTaGCGCTCTGTTCTGCTCCTT +
Preference number: 4 (lower is better)
Translates to: KQKPVDHFRHINQVVIHKFSYHH*RSVLLL
Trigger: AAGGAGCAGAACAGAGCGGCAGTGATGATAAGAAAA...CTTGTGTATCACAACTTGGTTGATATGCCTAAAATGATCTACTGGCTTTTGCTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR GCA 90 bp AAGCAAAAGCCAGTAGATCATTTTAGGCATATCAACCAAGTTGTGATACACAAGTCCACATTTTCCCAATaGTGCCATTTCCAGGAGATT +
Preference number: 4 (lower is better)
Translates to: KQKPVDHFRHINQVVIHKSTFSQ*CHFQEI
Trigger: AATCTCCTGGAAATGGCAGCATTGGGAAAATGTGGA...CTTGTGTATCACAACTTGGTTGATATGCCTAAAATGATCTACTGGCTTTTGCTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR GCA 90 bp AAGCAAAAGCCAGTAGATCATTTTAGGCATATCAACCAAGTTGTGATACACAAGTTCTGCATGTCCTCCTaGAATCTAATGAGCACAAGA +
Preference number: 4 (lower is better)
Translates to: KQKPVDHFRHINQVVIHKFCMSS*NLMSTR
Trigger: TCTTGTGCTCATTAGATTGCAGGAGGACATGCAGAA...CTTGTGTATCACAACTTGGTTGATATGCCTAAAATGATCTACTGGCTTTTGCTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR TCA 90 bp AATACGTTTTCATTTTATTGCAAAGCACCCTATGAAGCAGACAGTAGATATCCTTCATTTCTATCTTGGTaGGCACAGACAATGGTGTGT +
Preference number: 4 (lower is better)
Translates to: NTFSFYCKAPYEADSRYPSFLSW*AQTMVC
Trigger: ACACACCATTGTCTGTGCTCACCAAGATAGAAATGA...AGGATATCTACTGTCTGCTTCATAGGGTGCTTTGCAATAAAATGAAAACGTATT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR GCA 90 bp AATACGTTTTCATTTTATTGCAAAGCACCCTATGAAGCAGACAGTAGATATCCTACAGGGTCCTTCAGTTaGCTGTTTGTAGAAGCTATA +
Preference number: 4 (lower is better)
Translates to: NTFSFYCKAPYEADSRYPTGSFS*LFVEAI
Trigger: TATAGCTTCTACAAACAGGCAACTGAAGGACCCTGT...AGGATATCTACTGTCTGCTTCATAGGGTGCTTTGCAATAAAATGAAAACGTATT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR GCA 90 bp AATACGTTTTCATTTTATTGCAAAGCACCCTATGAAGCAGACAGTAGATATCCTACATTTTCCCAATGCTaGCATTTCCAGGAGATTGCT +
Preference number: 4 (lower is better)
Translates to: NTFSFYCKAPYEADSRYPTFSQC*HFQEIA
Trigger: AGCAATCTCCTGGAAATGGCAGCATTGGGAAAATGT...AGGATATCTACTGTCTGCTTCATAGGGTGCTTTGCAATAAAATGAAAACGTATT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR GCA 90 bp AATACGTTTTCATTTTATTGCAAAGCACCCTATGAAGCAGACAGTAGATATCCTTCCACATTTTCCCAATaGTGCCATTTCCAGGAGATT +
Preference number: 4 (lower is better)
Translates to: NTFSFYCKAPYEADSRYPSTFSQ*CHFQEI
Trigger: AATCTCCTGGAAATGGCAGCATTGGGAAAATGTGGA...AGGATATCTACTGTCTGCTTCATAGGGTGCTTTGCAATAAAATGAAAACGTATT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR CCA 90 bp AAACTGAGATTTTCTTCTGAATTCCACTTCATTTCCAGTCCGTCTCTTAGGTCGATTTCATTTGTTGGTTaGAATGATCCATTTTTCGGC +
Preference number: 4 (lower is better)
Translates to: KLRFSSEFHFISSPSLRSISFVG*NDPFFG
Trigger: GCCGAAAAATGGATCATTCCAACCAACAAATGAAAT...CGACCTAAGAGACGGACTGGAAATGAAGTGGAATTCAGAAGAAAATCTCAGTTT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS-3UTR CCA 90 bp AATACGTTTTCATTTTATTGCAAAGCACCCTATGAAGCAGACAGTAGATATCCTCCTTTTAACTCTTCTTaGGCCTCTTCTTCTTCAGAC +
Preference number: 4 (lower is better)
Translates to: NTFSFYCKAPYEADSRYPPFNSS*ASSSSD
Trigger: GTCTGAAGAAGAAGAGGCCCAAGAAGAGTTAAAAGG...AGGATATCTACTGTCTGCTTCATAGGGTGCTTTGCAATAAAATGAAAACGTATT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR CCA 90 bp AAACTGAGATTTTCTTCTGAATTCCACTTCATTTCCAGTCCGTCTCTTAGGTCGGAATCACTTGTTAAATaGTGTATTCCTGAAGCATCT +
Preference number: 4 (lower is better)
Translates to: KLRFSSEFHFISSPSLRSESLVK*CIPEAS
Trigger: AGATGCTTCAGGAATACACCATTTAACAAGTGATTC...CGACCTAAGAGACGGACTGGAAATGAAGTGGAATTCAGAAGAAAATCTCAGTTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS-3UTR CCA 90 bp TTTCGGACAGTTGTATCTCCTGCCTGCCATTTAAGATTACTGTATATGAACCACGAATCACTTGTTAAATaGTGTATTCCTGAAGCATCT +
Preference number: 4 (lower is better)
Translates to: FRTVVSPACHLRLLYMNHESLVK*CIPEAS
Trigger: AGATGCTTCAGGAATACACCATTTAACAAGTGATTC...GTGGTTCATATACAGTAATCTTAAATGGCAGGCAGGAGATACAACTGTCCGAAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR CCA 90 bp AAGCAAAAGCCAGTAGATCATTTTAGGCATATCAACCAAGTTGTGATACACAAGTCCTTCGCTCAAATGTaGTATTCTATTCCCTACTCT +
Preference number: 4 (lower is better)
Translates to: KQKPVDHFRHINQVVIHKSFAQM*YSIPYS
Trigger: AGAGTAGGGAATAGAATACCACATTTGAGCGAAGGA...CTTGTGTATCACAACTTGGTTGATATGCCTAAAATGATCTACTGGCTTTTGCTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114529.10
ENSMUST00000228050.2
3UTR CAA 72 bp TGCCTGCCATTTAAGATTACTGTATATGAACCACTGTaGCTTCTTGCTTTAGCTTTGTACACAGTCAATACA +
Preference number: 4 (lower is better)
Translates to: CLPFKITVYEPL*LLALALYTVNT
Trigger: TGTATTGACTGTGTACAAAGCTAAAGCAAGAAGCAACAGTGGTTCATATACAGTAATCTTAAATGGCAGGCA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR TCA 90 bp AATACGTTTTCATTTTATTGCAAAGCACCCTATGAAGCAGACAGTAGATATCCTAAATGTGCCAACCACTaGGCAATAAAAGGCCATATA +
Preference number: 4 (lower is better)
Translates to: NTFSFYCKAPYEADSRYPKCANH*AIKGHI
Trigger: TATATGGCCTTTTATTGCTCAGTGGTTGGCACATTT...AGGATATCTACTGTCTGCTTCATAGGGTGCTTTGCAATAAAATGAAAACGTATT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR GCA 90 bp AAGCAAAAGCCAGTAGATCATTTTAGGCATATCAACCAAGTTGTGATACACAAGAGTCAGAACTCTTGCTaGTCTTTTTGTCTTCTACAA +
Preference number: 4 (lower is better)
Translates to: KQKPVDHFRHINQVVIHKSQNSC*SFCLLQ
Trigger: TTGTAGAAGACAAAAAGAGCAGCAAGAGTTCTGACT...CTTGTGTATCACAACTTGGTTGATATGCCTAAAATGATCTACTGGCTTTTGCTT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR GCA 90 bp AATACGTTTTCATTTTATTGCAAAGCACCCTATGAAGCAGACAGTAGATATCCTAGTCAGAACTCTTGCTaGTCTTTTTGTCTTCTACAA +
Preference number: 4 (lower is better)
Translates to: NTFSFYCKAPYEADSRYPSQNSC*SFCLLQ
Trigger: TTGTAGAAGACAAAAAGAGCAGCAAGAGTTCTGACT...AGGATATCTACTGTCTGCTTCATAGGGTGCTTTGCAATAAAATGAAAACGTATT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR GCA 90 bp AATACGTTTTCATTTTATTGCAAAGCACCCTATGAAGCAGACAGTAGATATCCTTCAAGTCAGAACTCTTaGTGCTCTTTTTGTCTTCTA +
Preference number: 4 (lower is better)
Translates to: NTFSFYCKAPYEADSRYPSSQNS*CSFCLL
Trigger: TAGAAGACAAAAAGAGCAGCAAGAGTTCTGACTTGA...AGGATATCTACTGTCTGCTTCATAGGGTGCTTTGCAATAAAATGAAAACGTATT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS TCA 90 bp ACTCTGGATCACCTTCACGGCCGCCTCAAATCTGGTTTCATACACTaGCGGTGTGTCCGCCATCTCCAGCTGCCAGCGCCGGCCTCGGTC +
Preference number: 5 (lower is better)
Translates to: TLDHLHGRLKSGFIH*RCVRHLQLPAPASV
Trigger: GACCGAGGCCGGCGCTGGCAGCTGGAGATGGCGGACACACCGTCAGTGTATGAAACCAGATTTGAGGCGGCCGTGAAGGTGATCCAGAGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000228050.2
CDS-3UTR CAA 90 bp TCTTATAGAAGCCAGGACCACCAGCCCAGGGGAGGCACCACCCACAACAGCAGCACCTCCACTTCCTACTaGCCGACCCTTGGGTCCTTC +
Preference number: 5 (lower is better)
Translates to: SYRSQDHQPRGGTTHNSSTSTSY*PTLGSF
Trigger: GAAGGACCCAAGGGTCGGCAAGTAGGAAGTGGAGGT...GCTGCTGTTGTGGGTGGTGCCTCCCCTGGGCTGGTGGTCCTGGCTTCTATAAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS GCA 90 bp TCAAATCTGGTTTCATACACTGACGGTGTGTCCGCCATCTCCAGCTaGCAGCGCCGGCCTCGGTCCCAAGGTCTGTCCGCGGTAATCACA +
Preference number: 5 (lower is better)
Translates to: SNLVSYTDGVSAISS*QRRPRSQGLSAVIT
Trigger: TGTGATTACCGCGGACAGACCTTGGGACCGAGGCCGGCGCTGGCAGCTGGAGATGGCGGACACACCGTCAGTGTATGAAACCAGATTTGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000228050.2
CDS GCA 90 bp CTGACACTGGAGAAGTCCTCGCTCTCTCCACCTCTCGTCTCACGGTaGGGTGCTCCACTGCTACTTCTGCCATCTTCTCCTCCGTGTTTC +
Preference number: 5 (lower is better)
Translates to: LTLEKSSLSPPLVSR*GAPLLLLPSSPPCF
Trigger: GAAACACGGAGGAGAAGATGGCAGAAGTAGCAGTGGAGCACCGCACCGTGAGACGAGAGGTGGAGAGAGCGAGGACTTCTCCAGTGTCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS-3UTR CAA 90 bp ACTAAAGCCCAGTCTCCTGGAGAGGATTCTTCCGTCCGGTTCCTGCCACGTAGCACCTCCACTTCCTACTaGCCGACCCTTGGGTCCTTC +
Preference number: 5 (lower is better)
Translates to: TKAQSPGEDSSVRFLPRSTSTSY*PTLGSF
Trigger: GAAGGACCCAAGGGTCGGCAAGTAGGAAGTGGAGGT...GCTACGTGGCAGGAACCGGACGGAAGAATCCTCTCCAGGAGACTGGGCTTTAGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS GCA 90 bp AGTCCTCGCTCTCTCCACCTCTCGTCTCACGGTGCGGTGCTCCACTaGTACTTCTGCCATCTTCTCCTCCGTGTTTCACTTCGCCTTTTC +
Preference number: 5 (lower is better)
Translates to: SPRSLHLSSHGAVLH*YFCHLLLRVSLRLF
Trigger: GAAAAGGCGAAGTGAAACACGGAGGAGAAGATGGCAGAAGTAGCAGTGGAGCACCGCACCGTGAGACGAGAGGTGGAGAGAGCGAGGACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS GCA 90 bp ACTGGAGAAGTCCTCGCTCTCTCCACCTCTCGTCTCACGGTGCGGTaGTCCACTGCTACTTCTGCCATCTTCTCCTCCGTGTTTCACTTC +
Preference number: 5 (lower is better)
Translates to: TGEVLALSTSRLTVR*STATSAIFSSVFHF
Trigger: GAAGTGAAACACGGAGGAGAAGATGGCAGAAGTAGCAGTGGAGCACCGCACCGTGAGACGAGAGGTGGAGAGAGCGAGGACTTCTCCAGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS-3UTR CAA 90 bp ACTAAAGCCCAGTCTCCTGGAGAGGATTCTTCCGTCCGGTTCCTGCCACGTAGCCCTACTTGCCGACCCTaGGGTCCTTCGCTCAAATGT +
Preference number: 5 (lower is better)
Translates to: TKAQSPGEDSSVRFLPRSPTCRP*GPSLKC
Trigger: ACATTTGAGCGAAGGACCCAAGGGTCGGCAAGTAGG...GCTACGTGGCAGGAACCGGACGGAAGAATCCTCTCCAGGAGACTGGGCTTTAGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS TCA 90 bp TGGGTCCTTCGCTCAAATGTGGTATTCTATTCCCTCTCCCTCTCCTaGCACTGGAGAAGTCCTCGCTCTCTCCACCTCTCGTCTCACGGT +
Preference number: 5 (lower is better)
Translates to: WVLRSNVVFYSLSLS*HWRSPRSLHLSSHG
Trigger: ACCGTGAGACGAGAGGTGGAGAGAGCGAGGACTTCTCCAGTGTCAGGAGAGGGAGAGGGAATAGAATACCACATTTGAGCGAAGGACCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000114526.9
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
CDS CCA 90 bp CATTTTTCGGCAAACTCTGGATCACCTTCACGGCCGCCTCAAATCTaGTTTCATACACTGACGGTGTGTCCGCCATCTCCAGCTGCCAGC +
Preference number: 5 (lower is better)
Translates to: HFSANSGSPSRPPQI*FHTLTVCPPSPAAS
Trigger: GCTGGCAGCTGGAGATGGCGGACACACCGTCAGTGTATGAAACCAGATTTGAGGCGGCCGTGAAGGTGATCCAGAGTTTGCCGAAAAATG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000228050.2
CDS-3UTR CAA 90 bp TCTTATAGAAGCCAGGACCACCAGCCCAGGGGAGGCACCACCCACAACAGCAGCGCCATTTCCAGGAGATaGCTGAGCATCTTCACAAAA +
Preference number: 5 (lower is better)
Translates to: SYRSQDHQPRGGTTHNSSAISRR*LSIFTK
Trigger: TTTTGTGAAGATGCTCAGCAATCTCCTGGAAATGGC...GCTGCTGTTGTGGGTGGTGCCTCCCCTGGGCTGGTGGTCCTGGCTTCTATAAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR CAA 90 bp TCTTATAGAAGCCAGGACCACCAGCCCAGGGGAGGCACCACCCACAACAGCAGCACTTCGCCTTTTCCTTaGACTGCTACCATCCACATT +
Preference number: 5 (lower is better)
Translates to: SYRSQDHQPRGGTTHNSSTSPFP*TATIHI
Trigger: AATGTGGATGGTAGCAGTCAAAGGAAAAGGCGAAGT...GCTGCTGTTGTGGGTGGTGCCTCCCCTGGGCTGGTGGTCCTGGCTTCTATAAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR CAA 90 bp ACTTCATTTCCAGTCCGTCTCTTAGGTCGTCCAGGCCCAGCAGTCTTCTTGAGTACCTCCACTTCCTACTaGCCGACCCTTGGGTCCTTC +
Preference number: 5 (lower is better)
Translates to: TSFPVRLLGRPGPAVFLSTSTSY*PTLGSF
Trigger: GAAGGACCCAAGGGTCGGCAAGTAGGAAGTGGAGGT...ACTCAAGAAGACTGCTGGGCCTGGACGACCTAAGAGACGGACTGGAAATGAAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS TCA 90 bp GTCCTTCGCTCAAATGTGGTATTCTATTCCCTACTCTCCCTCTCCTaGCACTGGAGAAGTCCTCGCTCTCTCCACCTCTCGTCTCACGGT +
Preference number: 5 (lower is better)
Translates to: VLRSNVVFYSLLSLS*HWRSPRSLHLSSHG
Trigger: ACCGTGAGACGAGAGGTGGAGAGAGCGAGGACTTCTCCAGTGTCAGGAGAGGGAGAGTAGGGAATAGAATACCACATTTGAGCGAAGGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000228050.2
CDS CCA 90 bp ACCTCCACTTCCTACTTGCCGACCCTTGGGTCCTTCGCTCAAATGTaGTATTCTATTCCCTCTCCCTCTCCTGACACTGGAGAAGTCCTC +
Preference number: 5 (lower is better)
Translates to: TSTSYLPTLGSFAQM*YSIPSPSPDTGEVL
Trigger: GAGGACTTCTCCAGTGTCAGGAGAGGGAGAGGGAATAGAATACCACATTTGAGCGAAGGACCCAAGGGTCGGCAAGTAGGAAGTGGAGGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000114526.9
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
CDS-3UTR CAA 90 bp CCCAGTCTCCTGGAGAGGATTCTTCCGTCCGGTTCCTGCCACGTAGCTGACAGTTACAGGGTCCTTCAGTaGCCTGTTTGTAGAAGCTAT +
Preference number: 5 (lower is better)
Translates to: PSLLERILPSGSCHVADSYRVLQ*PVCRSY
Trigger: ATAGCTTCTACAAACAGGCAACTGAAGGACCCTGTA...ACTGTCAGCTACGTGGCAGGAACCGGACGGAAGAATCCTCTCCAGGAGACTGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR CAA 90 bp ACTTCATTTCCAGTCCGTCTCTTAGGTCGTCCAGGCCCAGCAGTCTTCTTGAGTCCTACTTGCCGACCCTaGGGTCCTTCGCTCAAATGT +
Preference number: 5 (lower is better)
Translates to: TSFPVRLLGRPGPAVFLSPTCRP*GPSLKC
Trigger: ACATTTGAGCGAAGGACCCAAGGGTCGGCAAGTAGG...ACTCAAGAAGACTGCTGGGCCTGGACGACCTAAGAGACGGACTGGAAATGAAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS-3UTR CAA 90 bp CCCAGTCTCCTGGAGAGGATTCTTCCGTCCGGTTCCTGCCACGTAGCTGACAGTGTCAAGTCAGAACTCTaGCTGCTCTTTTTGTCTTCT +
Preference number: 5 (lower is better)
Translates to: PSLLERILPSGSCHVADSVKSEL*LLFLSS
Trigger: AGAAGACAAAAAGAGCAGCAAGAGTTCTGACTTGAC...ACTGTCAGCTACGTGGCAGGAACCGGACGGAAGAATCCTCTCCAGGAGACTGGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR CAA 90 bp TTTCCAGTCCGTCTCTTAGGTCGTCCAGGCCCAGCAGTCTTCTTGAGTAAAAAGCCTACTTGCCGACCCTaGGGTCCTTCGCTCAAATGT +
Preference number: 5 (lower is better)
Translates to: FPVRLLGRPGPAVFLSKKPTCRP*GPSLKC
Trigger: ACATTTGAGCGAAGGACCCAAGGGTCGGCAAGTAGG...CTTTTTACTCAAGAAGACTGCTGGGCCTGGACGACCTAAGAGACGGACTGGAAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS-3UTR CAA 90 bp CAGGTAGTCAAGGTCATCTTCAGCTACATAGAGAATTGGAGGCTGGTAGGAGCTACCTCCACTTCCTACTaGCCGACCCTTGGGTCCTTC +
Preference number: 5 (lower is better)
Translates to: QVVKVIFSYIENWRLVGATSTSY*PTLGSF
Trigger: GAAGGACCCAAGGGTCGGCAAGTAGGAAGTGGAGGT...AGCTCCTACCAGCCTCCAATTCTCTATGTAGCTGAAGATGACCTTGACTACCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS TCA 90 bp GGGGACATCTCAAAGGGCCACCAAGCTGGTCTCTGTGAGGAGGGCTaGTTACTTGTCTGCAAAGATAATTTCGCCTGCGAAGCAGTTAGT +
Preference number: 5 (lower is better)
Translates to: GDISKGHQAGLCEEG*LLVCKDNFACEAVS
Trigger: ACTAACTGCTTCGCAGGCGAAATTATCTTTGCAGACAAGTAATCAGCCCTCCTCACAGAGACCAGCTTGGTGGCCCTTTGAGATGTCCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS-3UTR CAA 90 bp CCCAGTCTCCTGGAGAGGATTCTTCCGTCCGGTTCCTGCCACGTAGCTGACAGTATCTTCATTTCTATCTaGGTGAGCACAGACAATGGT +
Preference number: 5 (lower is better)
Translates to: PSLLERILPSGSCHVADSIFISI*VSTDNG
Trigger: ACCATTGTCTGTGCTCACCAAGATAGAAATGAAGAT...ACTGTCAGCTACGTGGCAGGAACCGGACGGAAGAATCCTCTCCAGGAGACTGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR CAA 90 bp ACTAAAGCCCAGTCTCCTGGAGAGGATTCTTCCGTCCGGTTCCTGCCACGTAGCCTCTTCTTGTCCAAATaGCTCCATAGAGTCACAGTA +
Preference number: 5 (lower is better)
Translates to: TKAQSPGEDSSVRFLPRSLFLSK*LHRVTV
Trigger: TACTGTGACTCTATGGAGCAATTTGGACAAGAAGAG...GCTACGTGGCAGGAACCGGACGGAAGAATCCTCTCCAGGAGACTGGGCTTTAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR CAA 90 bp GAACCTGGAGGCAGGAGCAATAGAGACCATGAAGGGGTGCTGCTTACTGGCTTGGCCATTTCCAGGAGATaGCTGAGCATCTTCACAAAA +
Preference number: 5 (lower is better)
Translates to: EPGGRSNRDHEGVLLTGLAISRR*LSIFTK
Trigger: TTTTGTGAAGATGCTCAGCAATCTCCTGGAAATGGC...CAAGCCAGTAAGCAGCACCCCTTCATGGTCTCTATTGCTCCTGCCTCCAGGTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228050.2
CDS-3UTR CAA 90 bp CAGGTAGTCAAGGTCATCTTCAGCTACATAGAGAATTGGAGGCTGGTAGGAGCTCCTACTTGCCGACCCTaGGGTCCTTCGCTCAAATGT +
Preference number: 5 (lower is better)
Translates to: QVVKVIFSYIENWRLVGAPTCRP*GPSLKC
Trigger: ACATTTGAGCGAAGGACCCAAGGGTCGGCAAGTAGG...AGCTCCTACCAGCCTCCAATTCTCTATGTAGCTGAAGATGACCTTGACTACCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR CAA 90 bp ACTAAAGCCCAGTCTCCTGGAGAGGATTCTTCCGTCCGGTTCCTGCCACGTAGCAGGAGGGCTGATTACTaGTCTGCAAAGATAATTTCG +
Preference number: 5 (lower is better)
Translates to: TKAQSPGEDSSVRFLPRSRRADY*SAKIIS
Trigger: CGAAATTATCTTTGCAGACAAGTAATCAGCCCTCCT...GCTACGTGGCAGGAACCGGACGGAAGAATCCTCTCCAGGAGACTGGGCTTTAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS GCA 90 bp GTCCTGTCTGCTGAGAGCTCTCATCTCCAGGCTTTTCATCTTCACTaGTTCTGGTGCTCCGGGAAGAATCAGTATGAATGTCACTCTGTA +
Preference number: 5 (lower is better)
Translates to: VLSAESSHLQAFHLH*FWCSGKNQYECHSV
Trigger: TACAGAGTGACATTCATACTGATTCTTCCCGGAGCACCAGAAGCAGTGAAGATGAAAAGCCTGGAGATGAGAGCTCTCAGCAGACAGGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS-3UTR CAA 90 bp ACTTCATTTCCAGTCCGTCTCTTAGGTCGTCCAGGCCCAGCAGTCTTCTTGAGTTACAGGGTCCTTCAGTaGCCTGTTTGTAGAAGCTAT +
Preference number: 5 (lower is better)
Translates to: TSFPVRLLGRPGPAVFLSYRVLQ*PVCRSY
Trigger: ATAGCTTCTACAAACAGGCAACTGAAGGACCCTGTA...ACTCAAGAAGACTGCTGGGCCTGGACGACCTAAGAGACGGACTGGAAATGAAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS-3UTR CAA 90 bp GGAACCTGTGGAATCCTGTGCTTGGGATTTCGGACAGTTGTATCTCCTGCCTGCCTCTTCTTGTCCAAATaGCTCCATAGAGTCACAGTA +
Preference number: 5 (lower is better)
Translates to: GTCGILCLGFRTVVSPACLFLSK*LHRVTV
Trigger: TACTGTGACTCTATGGAGCAATTTGGACAAGAAGAG...GCAGGCAGGAGATACAACTGTCCGAAATCCCAAGCACAGGATTCCACAGGTTCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR CAA 90 bp ACTTCATTTCCAGTCCGTCTCTTAGGTCGTCCAGGCCCAGCAGTCTTCTTGAGTGCCATTTCCAGGAGATaGCTGAGCATCTTCACAAAA +
Preference number: 5 (lower is better)
Translates to: TSFPVRLLGRPGPAVFLSAISRR*LSIFTK
Trigger: TTTTGTGAAGATGCTCAGCAATCTCCTGGAAATGGC...ACTCAAGAAGACTGCTGGGCCTGGACGACCTAAGAGACGGACTGGAAATGAAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS TCA 90 bp TACTTCTGCCATCTTCTCCTCCGTGTTTCACTTCGCCTTTTCCTTTaGCTGCTACCATCCACATTTTCCCAATGCTGCCATTTCCAGGAG +
Preference number: 5 (lower is better)
Translates to: YFCHLLLRVSLRLFL*LLPSTFSQCCHFQE
Trigger: CTCCTGGAAATGGCAGCATTGGGAAAATGTGGATGGTAGCAGTCAAAGGAAAAGGCGAAGTGAAACACGGAGGAGAAGATGGCAGAAGTA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS CCA 90 bp TTCTTATCATCACTGCCGCTCTGTTCTGCTCCTTTTAACTCTTCTTaGGCCTCTTCTTCTTCAGACTCAGCCCCACTATCACTGCTCTCT +
Preference number: 5 (lower is better)
Translates to: FLSSLPLCSAPFNSS*ASSSSDSAPLSLLS
Trigger: AGAGAGCAGTGATAGTGGGGCTGAGTCTGAAGAAGAAGAGGCCCAAGAAGAGTTAAAAGGAGCAGAACAGAGCGGCAGTGATGATAAGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS-3UTR CAA 90 bp TTTCCAGTCCGTCTCTTAGGTCGTCCAGGCCCAGCAGTCTTCTTGAGTAAAAAGTACAGGGTCCTTCAGTaGCCTGTTTGTAGAAGCTAT +
Preference number: 5 (lower is better)
Translates to: FPVRLLGRPGPAVFLSKKYRVLQ*PVCRSY
Trigger: ATAGCTTCTACAAACAGGCAACTGAAGGACCCTGTA...CTTTTTACTCAAGAAGACTGCTGGGCCTGGACGACCTAAGAGACGGACTGGAAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS-3UTR CAA 90 bp ACTTCATTTCCAGTCCGTCTCTTAGGTCGTCCAGGCCCAGCAGTCTTCTTGAGTGTCAAGTCAGAACTCTaGCTGCTCTTTTTGTCTTCT +
Preference number: 5 (lower is better)
Translates to: TSFPVRLLGRPGPAVFLSVKSEL*LLFLSS
Trigger: AGAAGACAAAAAGAGCAGCAAGAGTTCTGACTTGAC...ACTCAAGAAGACTGCTGGGCCTGGACGACCTAAGAGACGGACTGGAAATGAAGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS-3UTR CAA 90 bp ACTTCATTTCCAGTCCGTCTCTTAGGTCGTCCAGGCCCAGCAGTCTTCTTGAGTCTCTTCTTGTCCAAATaGCTCCATAGAGTCACAGTA +
Preference number: 5 (lower is better)
Translates to: TSFPVRLLGRPGPAVFLSLFLSK*LHRVTV
Trigger: TACTGTGACTCTATGGAGCAATTTGGACAAGAAGAG...ACTCAAGAAGACTGCTGGGCCTGGACGACCTAAGAGACGGACTGGAAATGAAGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS-3UTR CAA 90 bp TTTCCAGTCCGTCTCTTAGGTCGTCCAGGCCCAGCAGTCTTCTTGAGTAAAAAGGCCATTTCCAGGAGATaGCTGAGCATCTTCACAAAA +
Preference number: 5 (lower is better)
Translates to: FPVRLLGRPGPAVFLSKKAISRR*LSIFTK
Trigger: TTTTGTGAAGATGCTCAGCAATCTCCTGGAAATGGC...CTTTTTACTCAAGAAGACTGCTGGGCCTGGACGACCTAAGAGACGGACTGGAAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS-3UTR CAA 90 bp TTTCCAGTCCGTCTCTTAGGTCGTCCAGGCCCAGCAGTCTTCTTGAGTAAAAAGACTTCGCCTTTTCCTTaGACTGCTACCATCCACATT +
Preference number: 5 (lower is better)
Translates to: FPVRLLGRPGPAVFLSKKTSPFP*TATIHI
Trigger: AATGTGGATGGTAGCAGTCAAAGGAAAAGGCGAAGT...CTTTTTACTCAAGAAGACTGCTGGGCCTGGACGACCTAAGAGACGGACTGGAAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS-3UTR CAA 90 bp CCAGCTCATCACCTAATATTCTGCCACCAGATAAAGCACTGTTGTGTAATGGTACCTACTTGCCGACCCTaGGGTCCTTCGCTCAAATGT +
Preference number: 5 (lower is better)
Translates to: PAHHLIFCHQIKHCCVMVPTCRP*GPSLKC
Trigger: ACATTTGAGCGAAGGACCCAAGGGTCGGCAAGTAGG...TACCATTACACAACAGTGCTTTATCTGGTGGCAGAATATTAGGTGATGAGCTGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR CAA 90 bp AAACTGAGATTTTCTTCTGAATTCCACTTCATTTCCAGTCCGTCTCTTAGGTCGACCTCCACTTCCTACTaGCCGACCCTTGGGTCCTTC +
Preference number: 5 (lower is better)
Translates to: KLRFSSEFHFISSPSLRSTSTSY*PTLGSF
Trigger: GAAGGACCCAAGGGTCGGCAAGTAGGAAGTGGAGGT...CGACCTAAGAGACGGACTGGAAATGAAGTGGAATTCAGAAGAAAATCTCAGTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS CCA 90 bp CATCTTCACTGGGATCTTCATTTCTATCTTGGTGAGCACAGACAATaGTGTGTCCTGTCTGCTGAGAGCTCTCATCTCCAGGCTTTTCAT +
Preference number: 5 (lower is better)
Translates to: HLHWDLHFYLGEHRQ*CVLSAESSHLQAFH
Trigger: ATGAAAAGCCTGGAGATGAGAGCTCTCAGCAGACAGGACACACCATTGTCTGTGCTCACCAAGATAGAAATGAAGATCCCAGTGAAGATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS-3UTR CAA 90 bp TTTCCAGTCCGTCTCTTAGGTCGTCCAGGCCCAGCAGTCTTCTTGAGTAAAAAGGTCAAGTCAGAACTCTaGCTGCTCTTTTTGTCTTCT +
Preference number: 5 (lower is better)
Translates to: FPVRLLGRPGPAVFLSKKVKSEL*LLFLSS
Trigger: AGAAGACAAAAAGAGCAGCAAGAGTTCTGACTTGAC...CTTTTTACTCAAGAAGACTGCTGGGCCTGGACGACCTAAGAGACGGACTGGAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS-3UTR CAA 90 bp CCACCCCCAACACGCCTCTTTCACATAAACATTGTTTGGGCTGAAGGCCATTTGGTCAAGTCAGAACTCTaGCTGCTCTTTTTGTCTTCT +
Preference number: 5 (lower is better)
Translates to: PPPTRLFHINIVWAEGHLVKSEL*LLFLSS
Trigger: AGAAGACAAAAAGAGCAGCAAGAGTTCTGACTTGAC...CAAATGGCCTTCAGCCCAAACAATGTTTATGTGAAAGAGGCGTGTTGGGGGTGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR CAA 90 bp ACTTCATTTCCAGTCCGTCTCTTAGGTCGTCCAGGCCCAGCAGTCTTCTTGAGTATCTTCATTTCTATCTaGGTGAGCACAGACAATGGT +
Preference number: 5 (lower is better)
Translates to: TSFPVRLLGRPGPAVFLSIFISI*VSTDNG
Trigger: ACCATTGTCTGTGCTCACCAAGATAGAAATGAAGAT...ACTCAAGAAGACTGCTGGGCCTGGACGACCTAAGAGACGGACTGGAAATGAAGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS-3UTR CAA 90 bp TTTCCAGTCCGTCTCTTAGGTCGTCCAGGCCCAGCAGTCTTCTTGAGTAAAAAGCTCTTCTTGTCCAAATaGCTCCATAGAGTCACAGTA +
Preference number: 5 (lower is better)
Translates to: FPVRLLGRPGPAVFLSKKLFLSK*LHRVTV
Trigger: TACTGTGACTCTATGGAGCAATTTGGACAAGAAGAG...CTTTTTACTCAAGAAGACTGCTGGGCCTGGACGACCTAAGAGACGGACTGGAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS-3UTR CAA 90 bp CAGGTAGTCAAGGTCATCTTCAGCTACATAGAGAATTGGAGGCTGGTAGGAGCTACTTCGCCTTTTCCTTaGACTGCTACCATCCACATT +
Preference number: 5 (lower is better)
Translates to: QVVKVIFSYIENWRLVGATSPFP*TATIHI
Trigger: AATGTGGATGGTAGCAGTCAAAGGAAAAGGCGAAGT...AGCTCCTACCAGCCTCCAATTCTCTATGTAGCTGAAGATGACCTTGACTACCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR CAA 90 bp TTTCCAGTCCGTCTCTTAGGTCGTCCAGGCCCAGCAGTCTTCTTGAGTAAAAAGAGGAGGGCTGATTACTaGTCTGCAAAGATAATTTCG +
Preference number: 5 (lower is better)
Translates to: FPVRLLGRPGPAVFLSKKRRADY*SAKIIS
Trigger: CGAAATTATCTTTGCAGACAAGTAATCAGCCCTCCT...CTTTTTACTCAAGAAGACTGCTGGGCCTGGACGACCTAAGAGACGGACTGGAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS-3UTR CAA 90 bp CAGGTAGTCAAGGTCATCTTCAGCTACATAGAGAATTGGAGGCTGGTAGGAGCTGTCAAGTCAGAACTCTaGCTGCTCTTTTTGTCTTCT +
Preference number: 5 (lower is better)
Translates to: QVVKVIFSYIENWRLVGAVKSEL*LLFLSS
Trigger: AGAAGACAAAAAGAGCAGCAAGAGTTCTGACTTGAC...AGCTCCTACCAGCCTCCAATTCTCTATGTAGCTGAAGATGACCTTGACTACCTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR CAA 90 bp TTTCCAGTCCGTCTCTTAGGTCGTCCAGGCCCAGCAGTCTTCTTGAGTAAAAAGATCTTCATTTCTATCTaGGTGAGCACAGACAATGGT +
Preference number: 5 (lower is better)
Translates to: FPVRLLGRPGPAVFLSKKIFISI*VSTDNG
Trigger: ACCATTGTCTGTGCTCACCAAGATAGAAATGAAGAT...CTTTTTACTCAAGAAGACTGCTGGGCCTGGACGACCTAAGAGACGGACTGGAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS-3UTR CAA 90 bp AACTCAGGTAGTCAAGGTCATCTTCAGCTACATAGAGAATTGGAGGCTGGTAGGGCCATTTCCAGGAGATaGCTGAGCATCTTCACAAAA +
Preference number: 5 (lower is better)
Translates to: NSGSQGHLQLHRELEAGRAISRR*LSIFTK
Trigger: TTTTGTGAAGATGCTCAGCAATCTCCTGGAAATGGC...CCTACCAGCCTCCAATTCTCTATGTAGCTGAAGATGACCTTGACTACCTGAGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR CAA 90 bp AACTCAGGTAGTCAAGGTCATCTTCAGCTACATAGAGAATTGGAGGCTGGTAGGACTTCGCCTTTTCCTTaGACTGCTACCATCCACATT +
Preference number: 5 (lower is better)
Translates to: NSGSQGHLQLHRELEAGRTSPFP*TATIHI
Trigger: AATGTGGATGGTAGCAGTCAAAGGAAAAGGCGAAGT...CCTACCAGCCTCCAATTCTCTATGTAGCTGAAGATGACCTTGACTACCTGAGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR CAA 90 bp CAGGTAGTCAAGGTCATCTTCAGCTACATAGAGAATTGGAGGCTGGTAGGAGCTAGGAGGGCTGATTACTaGTCTGCAAAGATAATTTCG +
Preference number: 5 (lower is better)
Translates to: QVVKVIFSYIENWRLVGARRADY*SAKIIS
Trigger: CGAAATTATCTTTGCAGACAAGTAATCAGCCCTCCT...AGCTCCTACCAGCCTCCAATTCTCTATGTAGCTGAAGATGACCTTGACTACCTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR CAA 90 bp AACTCAGGTAGTCAAGGTCATCTTCAGCTACATAGAGAATTGGAGGCTGGTAGGGTCAAGTCAGAACTCTaGCTGCTCTTTTTGTCTTCT +
Preference number: 5 (lower is better)
Translates to: NSGSQGHLQLHRELEAGRVKSEL*LLFLSS
Trigger: AGAAGACAAAAAGAGCAGCAAGAGTTCTGACTTGAC...CCTACCAGCCTCCAATTCTCTATGTAGCTGAAGATGACCTTGACTACCTGAGTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR CAA 90 bp AAGCAAAAGCCAGTAGATCATTTTAGGCATATCAACCAAGTTGTGATACACAAGCCTACTTGCCGACCCTaGGGTCCTTCGCTCAAATGT +
Preference number: 5 (lower is better)
Translates to: KQKPVDHFRHINQVVIHKPTCRP*GPSLKC
Trigger: ACATTTGAGCGAAGGACCCAAGGGTCGGCAAGTAGG...CTTGTGTATCACAACTTGGTTGATATGCCTAAAATGATCTACTGGCTTTTGCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR CAA 90 bp AATACGTTTTCATTTTATTGCAAAGCACCCTATGAAGCAGACAGTAGATATCCTACCTCCACTTCCTACTaGCCGACCCTTGGGTCCTTC +
Preference number: 5 (lower is better)
Translates to: NTFSFYCKAPYEADSRYPTSTSY*PTLGSF
Trigger: GAAGGACCCAAGGGTCGGCAAGTAGGAAGTGGAGGT...AGGATATCTACTGTCTGCTTCATAGGGTGCTTTGCAATAAAATGAAAACGTATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR CAA 90 bp AACTCAGGTAGTCAAGGTCATCTTCAGCTACATAGAGAATTGGAGGCTGGTAGGAGGAGGGCTGATTACTaGTCTGCAAAGATAATTTCG +
Preference number: 5 (lower is better)
Translates to: NSGSQGHLQLHRELEAGRRRADY*SAKIIS
Trigger: CGAAATTATCTTTGCAGACAAGTAATCAGCCCTCCT...CCTACCAGCCTCCAATTCTCTATGTAGCTGAAGATGACCTTGACTACCTGAGTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS TCA 90 bp AGCATCCCATTTATATCTTCCAATAGGATCCCAGAATCCAGGCCGTaGAAGTTTACAGGGTCCTTCAGTTGCCTGTTTGTAGAAGCTATA +
Preference number: 5 (lower is better)
Translates to: SIPFISSNRIPESRP*KFTGSFSCLFVEAI
Trigger: TATAGCTTCTACAAACAGGCAACTGAAGGACCCTGTAAACTTTCACGGCCTGGATTCTGGGATCCTATTGGAAGATATAAATGGGATGCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS-3UTR CAA 90 bp CCAGCTCATCACCTAATATTCTGCCACCAGATAAAGCACTGTTGTGTAATGGTATACAGGGTCCTTCAGTaGCCTGTTTGTAGAAGCTAT +
Preference number: 5 (lower is better)
Translates to: PAHHLIFCHQIKHCCVMVYRVLQ*PVCRSY
Trigger: ATAGCTTCTACAAACAGGCAACTGAAGGACCCTGTA...TACCATTACACAACAGTGCTTTATCTGGTGGCAGAATATTAGGTGATGAGCTGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR CAA 90 bp AACTCAGGTAGTCAAGGTCATCTTCAGCTACATAGAGAATTGGAGGCTGGTAGGATCTTCATTTCTATCTaGGTGAGCACAGACAATGGT +
Preference number: 5 (lower is better)
Translates to: NSGSQGHLQLHRELEAGRIFISI*VSTDNG
Trigger: ACCATTGTCTGTGCTCACCAAGATAGAAATGAAGAT...CCTACCAGCCTCCAATTCTCTATGTAGCTGAAGATGACCTTGACTACCTGAGTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR CAA 90 bp AAACTGAGATTTTCTTCTGAATTCCACTTCATTTCCAGTCCGTCTCTTAGGTCGGCCATTTCCAGGAGATaGCTGAGCATCTTCACAAAA +
Preference number: 5 (lower is better)
Translates to: KLRFSSEFHFISSPSLRSAISRR*LSIFTK
Trigger: TTTTGTGAAGATGCTCAGCAATCTCCTGGAAATGGC...CGACCTAAGAGACGGACTGGAAATGAAGTGGAATTCAGAAGAAAATCTCAGTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS-3UTR CAA 90 bp AAACTGAGATTTTCTTCTGAATTCCACTTCATTTCCAGTCCGTCTCTTAGGTCGACTTCGCCTTTTCCTTaGACTGCTACCATCCACATT +
Preference number: 5 (lower is better)
Translates to: KLRFSSEFHFISSPSLRSTSPFP*TATIHI
Trigger: AATGTGGATGGTAGCAGTCAAAGGAAAAGGCGAAGT...CGACCTAAGAGACGGACTGGAAATGAAGTGGAATTCAGAAGAAAATCTCAGTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS-3UTR CAA 90 bp TTTCGGACAGTTGTATCTCCTGCCTGCCATTTAAGATTACTGTATATGAACCACACTTCGCCTTTTCCTTaGACTGCTACCATCCACATT +
Preference number: 5 (lower is better)
Translates to: FRTVVSPACHLRLLYMNHTSPFP*TATIHI
Trigger: AATGTGGATGGTAGCAGTCAAAGGAAAAGGCGAAGT...GTGGTTCATATACAGTAATCTTAAATGGCAGGCAGGAGATACAACTGTCCGAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR CAA 90 bp AAACTGAGATTTTCTTCTGAATTCCACTTCATTTCCAGTCCGTCTCTTAGGTCGGTCAAGTCAGAACTCTaGCTGCTCTTTTTGTCTTCT +
Preference number: 5 (lower is better)
Translates to: KLRFSSEFHFISSPSLRSVKSEL*LLFLSS
Trigger: AGAAGACAAAAAGAGCAGCAAGAGTTCTGACTTGAC...CGACCTAAGAGACGGACTGGAAATGAAGTGGAATTCAGAAGAAAATCTCAGTTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS-3UTR CAA 90 bp AAACTGAGATTTTCTTCTGAATTCCACTTCATTTCCAGTCCGTCTCTTAGGTCGCTCTTCTTGTCCAAATaGCTCCATAGAGTCACAGTA +
Preference number: 5 (lower is better)
Translates to: KLRFSSEFHFISSPSLRSLFLSK*LHRVTV
Trigger: TACTGTGACTCTATGGAGCAATTTGGACAAGAAGAG...CGACCTAAGAGACGGACTGGAAATGAAGTGGAATTCAGAAGAAAATCTCAGTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS-3UTR CAA 90 bp TTTCGGACAGTTGTATCTCCTGCCTGCCATTTAAGATTACTGTATATGAACCACCTCTTCTTGTCCAAATaGCTCCATAGAGTCACAGTA +
Preference number: 5 (lower is better)
Translates to: FRTVVSPACHLRLLYMNHLFLSK*LHRVTV
Trigger: TACTGTGACTCTATGGAGCAATTTGGACAAGAAGAG...GTGGTTCATATACAGTAATCTTAAATGGCAGGCAGGAGATACAACTGTCCGAAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR CAA 90 bp AAACTGAGATTTTCTTCTGAATTCCACTTCATTTCCAGTCCGTCTCTTAGGTCGAGGAGGGCTGATTACTaGTCTGCAAAGATAATTTCG +
Preference number: 5 (lower is better)
Translates to: KLRFSSEFHFISSPSLRSRRADY*SAKIIS
Trigger: CGAAATTATCTTTGCAGACAAGTAATCAGCCCTCCT...CGACCTAAGAGACGGACTGGAAATGAAGTGGAATTCAGAAGAAAATCTCAGTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS-3UTR CAA 90 bp AAACTGAGATTTTCTTCTGAATTCCACTTCATTTCCAGTCCGTCTCTTAGGTCGATCTTCATTTCTATCTaGGTGAGCACAGACAATGGT +
Preference number: 5 (lower is better)
Translates to: KLRFSSEFHFISSPSLRSIFISI*VSTDNG
Trigger: ACCATTGTCTGTGCTCACCAAGATAGAAATGAAGAT...CGACCTAAGAGACGGACTGGAAATGAAGTGGAATTCAGAAGAAAATCTCAGTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS-3UTR CAA 90 bp AAGCAAAAGCCAGTAGATCATTTTAGGCATATCAACCAAGTTGTGATACACAAGACTTCGCCTTTTCCTTaGACTGCTACCATCCACATT +
Preference number: 5 (lower is better)
Translates to: KQKPVDHFRHINQVVIHKTSPFP*TATIHI
Trigger: AATGTGGATGGTAGCAGTCAAAGGAAAAGGCGAAGT...CTTGTGTATCACAACTTGGTTGATATGCCTAAAATGATCTACTGGCTTTTGCTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS TCA 90 bp ACCTTTATAGCCATTGGTAACAATGATTTCCAAATTCTTATCTGCTaGTTTCTTCAGCGTTTTCTTATCATCACTGCCGCTCTGTTCTGC +
Preference number: 5 (lower is better)
Translates to: TFIAIGNNDFQILIC*FLQRFLIITAALFC
Trigger: GCAGAACAGAGCGGCAGTGATGATAAGAAAACGCTGAAGAAATCAGCAGATAAGAATTTGGAAATCATTGTTACCAATGGCTATAAAGGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS-3UTR CAA 90 bp AATACGTTTTCATTTTATTGCAAAGCACCCTATGAAGCAGACAGTAGATATCCTTACAGGGTCCTTCAGTaGCCTGTTTGTAGAAGCTAT +
Preference number: 5 (lower is better)
Translates to: NTFSFYCKAPYEADSRYPYRVLQ*PVCRSY
Trigger: ATAGCTTCTACAAACAGGCAACTGAAGGACCCTGTA...AGGATATCTACTGTCTGCTTCATAGGGTGCTTTGCAATAAAATGAAAACGTATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR CAA 90 bp AAGCAAAAGCCAGTAGATCATTTTAGGCATATCAACCAAGTTGTGATACACAAGAGGAGGGCTGATTACTaGTCTGCAAAGATAATTTCG +
Preference number: 5 (lower is better)
Translates to: KQKPVDHFRHINQVVIHKRRADY*SAKIIS
Trigger: CGAAATTATCTTTGCAGACAAGTAATCAGCCCTCCT...CTTGTGTATCACAACTTGGTTGATATGCCTAAAATGATCTACTGGCTTTTGCTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS CCA 90 bp TCCATAGAGTCACAGTACACTTCACTATCTGAATCACTTGTTAAATaGTGTATTCCTGAAGCATCTTCACTGGGATCTTCATTTCTATCT +
Preference number: 5 (lower is better)
Translates to: SIESQYTSLSESLVK*CIPEASSLGSSFLS
Trigger: AGATAGAAATGAAGATCCCAGTGAAGATGCTTCAGGAATACACCATTTAACAAGTGATTCAGATAGTGAAGTGTACTGTGACTCTATGGA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS-3UTR CAA 90 bp AATACGTTTTCATTTTATTGCAAAGCACCCTATGAAGCAGACAGTAGATATCCTGTCAAGTCAGAACTCTaGCTGCTCTTTTTGTCTTCT +
Preference number: 5 (lower is better)
Translates to: NTFSFYCKAPYEADSRYPVKSEL*LLFLSS
Trigger: AGAAGACAAAAAGAGCAGCAAGAGTTCTGACTTGAC...AGGATATCTACTGTCTGCTTCATAGGGTGCTTTGCAATAAAATGAAAACGTATT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR CAA 90 bp AATACGTTTTCATTTTATTGCAAAGCACCCTATGAAGCAGACAGTAGATATCCTCTCTTCTTGTCCAAATaGCTCCATAGAGTCACAGTA +
Preference number: 5 (lower is better)
Translates to: NTFSFYCKAPYEADSRYPLFLSK*LHRVTV
Trigger: TACTGTGACTCTATGGAGCAATTTGGACAAGAAGAG...AGGATATCTACTGTCTGCTTCATAGGGTGCTTTGCAATAAAATGAAAACGTATT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS-3UTR CAA 90 bp AATACGTTTTCATTTTATTGCAAAGCACCCTATGAAGCAGACAGTAGATATCCTATCTTCATTTCTATCTaGGTGAGCACAGACAATGGT +
Preference number: 5 (lower is better)
Translates to: NTFSFYCKAPYEADSRYPIFISI*VSTDNG
Trigger: ACCATTGTCTGTGCTCACCAAGATAGAAATGAAGAT...AGGATATCTACTGTCTGCTTCATAGGGTGCTTTGCAATAAAATGAAAACGTATT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS GCA 72 bp GTTTCATACACTGACGGTGTGTCCGCCATCTCCAGCTaGCAGCGCCGGCCTCGGTCCCAAGGTCTGTCCGCG +
Preference number: 6 (lower is better)
Translates to: VSYTDGVSAISS*QRRPRSQGLSA
Trigger: CGCGGACAGACCTTGGGACCGAGGCCGGCGCTGGCAGCTGGAGATGGCGGACACACCGTCAGTGTATGAAAC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000228050.2
CDS TCA 72 bp CACCTTCACGGCCGCCTCAAATCTGGTTTCATACACTaGCGGTGTGTCCGCCATCTCCAGCTGCCAGCGCCG +
Preference number: 6 (lower is better)
Translates to: HLHGRLKSGFIH*RCVRHLQLPAP
Trigger: CGGCGCTGGCAGCTGGAGATGGCGGACACACCGTCAGTGTATGAAACCAGATTTGAGGCGGCCGTGAAGGTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000228050.2
CDS GCA 72 bp GTCCTCGCTCTCTCCACCTCTCGTCTCACGGTGCGGTaGTCCACTGCTACTTCTGCCATCTTCTCCTCCGTG +
Preference number: 6 (lower is better)
Translates to: VLALSTSRLTVR*STATSAIFSSV
Trigger: CACGGAGGAGAAGATGGCAGAAGTAGCAGTGGAGCACCGCACCGTGAGACGAGAGGTGGAGAGAGCGAGGAC
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS GCA 72 bp CTCTCGTCTCACGGTGCGGTGCTCCACTGCTACTTCTaGCATCTTCTCCTCCGTGTTTCACTTCGCCTTTTC +
Preference number: 6 (lower is better)
Translates to: LSSHGAVLHCYF*HLLLRVSLRLF
Trigger: GAAAAGGCGAAGTGAAACACGGAGGAGAAGATGGCAGAAGTAGCAGTGGAGCACCGCACCGTGAGACGAGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS GCA 72 bp TCTCTCCACCTCTCGTCTCACGGTGCGGTGCTCCACTaGTACTTCTGCCATCTTCTCCTCCGTGTTTCACTT +
Preference number: 6 (lower is better)
Translates to: SLHLSSHGAVLH*YFCHLLLRVSL
Trigger: AAGTGAAACACGGAGGAGAAGATGGCAGAAGTAGCAGTGGAGCACCGCACCGTGAGACGAGAGGTGGAGAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS GCA 72 bp GAGCCCCAGCGTTCTCCATCACCTCCACTTCCTACTTaGCGACCCTTGGGTCCTTCGCTCAAATGTGGTATT +
Preference number: 6 (lower is better)
Translates to: EPQRSPSPPLPT*RPLGPSLKCGI
Trigger: AATACCACATTTGAGCGAAGGACCCAAGGGTCGGCAAGTAGGAAGTGGAGGTGATGGAGAACGCTGGGGCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS CAA 90 bp GAGCCCCAGCGTTCTCCATCACCTCCACTTCCTACTTGCCGACCCTaGGGTCCTTCGCTCAAATGTGGTATTCTATTCCCTACTCTCCCT +
Preference number: 6 (lower is better)
Translates to: EPQRSPSPPLPTCRP*GPSLKCGILFPTLP
Trigger: AGGGAGAGTAGGGAATAGAATACCACATTTGAGCGAAGGACCCAAGGGTCGGCAAGTAGGAAGTGGAGGTGATGGAGAACGCTGGGGCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000228050.2
CDS CCA 72 bp GCAAACTCTGGATCACCTTCACGGCCGCCTCAAATCTaGTTTCATACACTGACGGTGTGTCCGCCATCTCCA +
Preference number: 6 (lower is better)
Translates to: ANSGSPSRPPQI*FHTLTVCPPSP
Trigger: TGGAGATGGCGGACACACCGTCAGTGTATGAAACCAGATTTGAGGCGGCCGTGAAGGTGATCCAGAGTTTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000226571.2
ENSMUST00000228050.2
CDS TCA 72 bp TCAAAGGGCCACCAAGCTGGTCTCTGTGAGGAGGGCTaGTTACTTGTCTGCAAAGATAATTTCGCCTGCGAA +
Preference number: 6 (lower is better)
Translates to: SKGHQAGLCEEG*LLVCKDNFACE
Trigger: TTCGCAGGCGAAATTATCTTTGCAGACAAGTAATCAGCCCTCCTCACAGAGACCAGCTTGGTGGCCCTTTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS CAA 72 bp GCCACCAAGCTGGTCTCTGTGAGGAGGGCTGATTACTaGTCTGCAAAGATAATTTCGCCTGCGAAGCAGTTA +
Preference number: 6 (lower is better)
Translates to: ATKLVSVRRADY*SAKIISPAKQL
Trigger: TAACTGCTTCGCAGGCGAAATTATCTTTGCAGACAAGTAATCAGCCCTCCTCACAGAGACCAGCTTGGTGGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS CAA 90 bp TCTCAAAGGGCCACCAAGCTGGTCTCTGTGAGGAGGGCTGATTACTaGTCTGCAAAGATAATTTCGCCTGCGAAGCAGTTAGTGTTTCCA +
Preference number: 6 (lower is better)
Translates to: SQRATKLVSVRRADY*SAKIISPAKQLVFP
Trigger: TGGAAACACTAACTGCTTCGCAGGCGAAATTATCTTTGCAGACAAGTAATCAGCCCTCCTCACAGAGACCAGCTTGGTGGCCCTTTGAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS CCA 72 bp TGGGATCTTCATTTCTATCTTGGTGAGCACAGACAATaGTGTGTCCTGTCTGCTGAGAGCTCTCATCTCCAG +
Preference number: 6 (lower is better)
Translates to: WDLHFYLGEHRQ*CVLSAESSHLQ
Trigger: CTGGAGATGAGAGCTCTCAGCAGACAGGACACACCATTGTCTGTGCTCACCAAGATAGAAATGAAGATCCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS CAA 90 bp CTACTTCTGCCATCTTCTCCTCCGTGTTTCACTTCGCCTTTTCCTTaGACTGCTACCATCCACATTTTCCCAATGCTGCCATTTCCAGGA +
Preference number: 6 (lower is better)
Translates to: LLLPSSPPCFTSPFP*TATIHIFPMLPFPG
Trigger: TCCTGGAAATGGCAGCATTGGGAAAATGTGGATGGTAGCAGTCAAAGGAAAAGGCGAAGTGAAACACGGAGGAGAAGATGGCAGAAGTAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS GCA 72 bp TTCTCCTCCGTGTTTCACTTCGCCTTTTCCTTTGACTaGTACCATCCACATTTTCCCAATGCTGCCATTTCC +
Preference number: 6 (lower is better)
Translates to: FSSVFHFAFSFD*YHPHFPNAAIS
Trigger: GGAAATGGCAGCATTGGGAAAATGTGGATGGTAGCAGTCAAAGGAAAAGGCGAAGTGAAACACGGAGGAGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS CCA 72 bp AGCTCTCATCTCCAGGCTTTTCATCTTCACTGCTTCTaGTGCTCCGGGAAGAATCAGTATGAATGTCACTCT +
Preference number: 6 (lower is better)
Translates to: SSHLQAFHLHCF*CSGKNQYECHS
Trigger: AGAGTGACATTCATACTGATTCTTCCCGGAGCACCAGAAGCAGTGAAGATGAAAAGCCTGGAGATGAGAGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS CAA 90 bp GACTGCTACCATCCACATTTTCCCAATGCTGCCATTTCCAGGAGATaGCTGAGCATCTTCACAAAAACCAGAACTTTCCAAGTGCTGAGT +
Preference number: 6 (lower is better)
Translates to: DCYHPHFPNAAISRR*LSIFTKTRTFQVLS
Trigger: ACTCAGCACTTGGAAAGTTCTGGTTTTTGTGAAGATGCTCAGCAATCTCCTGGAAATGGCAGCATTGGGAAAATGTGGATGGTAGCAGTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS GCA 72 bp TCTCATCTCCAGGCTTTTCATCTTCACTGCTTCTGGTaGTCCGGGAAGAATCAGTATGAATGTCACTCTGTA +
Preference number: 6 (lower is better)
Translates to: SHLQAFHLHCFW*SGKNQYECHSV
Trigger: TACAGAGTGACATTCATACTGATTCTTCCCGGAGCACCAGAAGCAGTGAAGATGAAAAGCCTGGAGATGAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS CCA 72 bp TTTGTTGGTTGGAATGATCCATTTTTCGGCAAACTCTaGATCACCTTCACGGCCGCCTCAAATCTGGTTTCA +
Preference number: 6 (lower is better)
Translates to: FVGWNDPFFGKL*ITFTAASNLVS
Trigger: TGAAACCAGATTTGAGGCGGCCGTGAAGGTGATCCAGAGTTTGCCGAAAAATGGATCATTCCAACCAACAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 10 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000144088.2
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS TCA 72 bp CACATTTTCCCAATGCTGCCATTTCCAGGAGATTGCTaGGCATCTTCACAAAAACCAGAACTTTCCAAGTGC +
Preference number: 6 (lower is better)
Translates to: HIFPMLPFPGDC*ASSQKPELSKC
Trigger: GCACTTGGAAAGTTCTGGTTTTTGTGAAGATGCTCAGCAATCTCCTGGAAATGGCAGCATTGGGAAAATGTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS TCA 72 bp TTTATATCTTCCAATAGGATCCCAGAATCCAGGCCGTaGAAGTTTACAGGGTCCTTCAGTTGCCTGTTTGTA +
Preference number: 6 (lower is better)
Translates to: FISSNRIPESRP*KFTGSFSCLFV
Trigger: TACAAACAGGCAACTGAAGGACCCTGTAAACTTTCACGGCCTGGATTCTGGGATCCTATTGGAAGATATAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS GCA 72 bp TCTCCAATCGGACTGAGGTCAAGTCAGAACTCTTGCTaGTCTTTTTGTCTTCTACAATCTCGTAAAATGGAC +
Preference number: 6 (lower is better)
Translates to: SPIGLRSSQNSC*SFCLLQSRKMD
Trigger: GTCCATTTTACGAGATTGTAGAAGACAAAAAGAGCAGCAAGAGTTCTGACTTGACCTCAGTCCGATTGGAGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000228050.2
CDS CAA 72 bp CCACTATCACTGCTCTCTGCTTTACCATTAACAGCTTaGGCATTTGAAGAGGTCAGAACATTACCAAGATCT +
Preference number: 6 (lower is better)
Translates to: PLSLLSALPLTA*AFEEVRTLPRS
Trigger: AGATCTTGGTAATGTTCTGACCTCTTCAAATGCCAAAGCTGTTAATGGTAAAGCAGAGAGCAGTGATAGTGG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS TCA 72 bp TGCAATCATGGCTTCTTCTTTAGTCATATCACCCAGTaGACTCCAAGCATCCCATTTATATCTTCCAATAGG +
Preference number: 6 (lower is better)
Translates to: CNHGFFFSHITQ*TPSIPFISSNR
Trigger: CCTATTGGAAGATATAAATGGGATGCTTGGAGTTCACTGGGTGATATGACTAAAGAAGAAGCCATGATTGCA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS GCA 72 bp CATTACCAAGATCTGAGGTCAAGTCAGAACTCTTGCTaGTCTTTTTGTCTTCTACAATCTCGTAAAATGGAC +
Preference number: 6 (lower is better)
Translates to: HYQDLRSSQNSC*SFCLLQSRKMD
Trigger: GTCCATTTTACGAGATTGTAGAAGACAAAAAGAGCAGCAAGAGTTCTGACTTGACCTCAGATCTTGGTAATG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000227809.2
CDS CCA 72 bp CACTTGTTAAATGGTGTATTCCTGAAGCATCTTCACTaGGATCTTCATTTCTATCTTGGTGAGCACAGACAA +
Preference number: 6 (lower is better)
Translates to: HLLNGVFLKHLH*DLHFYLGEHRQ
Trigger: TTGTCTGTGCTCACCAAGATAGAAATGAAGATCCCAGTGAAGATGCTTCAGGAATACACCATTTAACAAGTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2
CDS TCA 72 bp GCCATTGGTAACAATGATTTCCAAATTCTTATCTGCTaGTTTCTTCAGCGTTTTCTTATCATCACTGCCGCT +
Preference number: 6 (lower is better)
Translates to: AIGNNDFQILIC*FLQRFLIITAA
Trigger: AGCGGCAGTGATGATAAGAAAACGCTGAAGAAATCAGCAGATAAGAATTTGGAAATCATTGTTACCAATGGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000028121.15
ENSMUST00000114523.10
ENSMUST00000114526.9
ENSMUST00000114529.10
ENSMUST00000155602.4
ENSMUST00000226571.2
ENSMUST00000227663.2
ENSMUST00000227809.2
ENSMUST00000228050.2