RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ACAP3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000029033

Ensembl transcript IDs: ENSMUST00000079031.6, ENSMUST00000105584.10

Found 311 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GAGGAGGCAGGGGTGGACTTGAGCCCTCGGGCACAAGGACCCAAGTaGCCAGCCACGTGGCTTTGGGACGCCTGCGTCCAGGCTGGGTGG +
Preference number: 1 (lower is better)
Translates to: EEAGVDLSPRAQGPK*PATWLWDACVQAGW
Trigger: CCACCCAGCCTGGACGCAGGCGTCCCAAAGCCACGTGGCTGGCCACTTGGGTCCTTGTGCCCGAGGGCTCAAGTCCACCCCTGCCTCCTC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
3UTR GCA 90 bp CGGGCACAAGGACCCAAGTGGCCAGCCACGTGGCTTTGGGACGCCTaGGTCCAGGCTGGGTGGAAGACCTGGGCCAAAGCTCCACCTCCC +
Preference number: 1 (lower is better)
Translates to: RAQGPKWPATWLWDA*VQAGWKTWAKAPPP
Trigger: GGGAGGTGGAGCTTTGGCCCAGGTCTTCCACCCAGCCTGGACGCAGGCGTCCCAAAGCCACGTGGCTGGCCACTTGGGTCCTTGTGCCCG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
3UTR GCA 90 bp ACGAGCAAGGTACTCAGGGTGACTCCCTGGGTGGGCTGCCACTCCTaGCAGGGAAGGTGCTGGTGGCCAGCCACCAGCCCTAGGCTGGAG +
Preference number: 1 (lower is better)
Translates to: TSKVLRVTPWVGCHS*QGRCWWPATSPRLE
Trigger: CTCCAGCCTAGGGCTGGTGGCTGGCCACCAGCACCTTCCCTGGCAGGAGTGGCAGCCCACCCAGGGAGTCACCCTGAGTACCTTGCTCGT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
3UTR CCA 90 bp AACCCAGATGCTGGGGTCACGAGCAAGGTACTCAGGGTGACTCCCTaGGTGGGCTGCCACTCCTGCCAGGGAAGGTGCTGGTGGCCAGCC +
Preference number: 1 (lower is better)
Translates to: NPDAGVTSKVLRVTP*VGCHSCQGRCWWPA
Trigger: GGCTGGCCACCAGCACCTTCCCTGGCAGGAGTGGCAGCCCACCCAGGGAGTCACCCTGAGTACCTTGCTCGTGACCCCAGCATCTGGGTT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
3UTR CCA 90 bp TTGAGCCCTCGGGCACAAGGACCCAAGTGGCCAGCCACGTGGCTTTaGGACGCCTGCGTCCAGGCTGGGTGGAAGACCTGGGCCAAAGCT +
Preference number: 1 (lower is better)
Translates to: LSPRAQGPKWPATWL*DACVQAGWKTWAKA
Trigger: AGCTTTGGCCCAGGTCTTCCACCCAGCCTGGACGCAGGCGTCCCAAAGCCACGTGGCTGGCCACTTGGGTCCTTGTGCCCGAGGGCTCAA
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
3UTR CCA 90 bp GCAGGAAGGAGTGGGTCCCTGCCAGCCCAAAGGTGGCAGGGTAGGTaGTGGGCAGAGCTCAAGCAGGACGGAGAAGCTGATTCTGCTCTG +
Preference number: 1 (lower is better)
Translates to: AGRSGSLPAQRWQGR*WAELKQDGEADSAL
Trigger: CAGAGCAGAATCAGCTTCTCCGTCCTGCTTGAGCTCTGCCCACCACCTACCCTGCCACCTTTGGGCTGGCAGGGACCCACTCCTTCCTGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
3UTR CCA 90 bp AGTGTGATCAGAGCAGGAAGGAGTGGGTCCCTGCCAGCCCAAAGGTaGCAGGGTAGGTGGTGGGCAGAGCTCAAGCAGGACGGAGAAGCT +
Preference number: 1 (lower is better)
Translates to: SVIRAGRSGSLPAQR*QGRWWAELKQDGEA
Trigger: AGCTTCTCCGTCCTGCTTGAGCTCTGCCCACCACCTACCCTGCCACCTTTGGGCTGGCAGGGACCCACTCCTTCCTGCTCTGATCACACT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
3UTR TCA 90 bp CTGCTCTGTAGGGCCACAGCCATCAAGCAAGGGAGTCAGAGGCCCTaGCCCAGTGCCGACATTACTGTCCATGGATGCTCCCAGGGCAGT +
Preference number: 1 (lower is better)
Translates to: LLCRATAIKQGSQRP*PSADITVHGCSQGS
Trigger: ACTGCCCTGGGAGCATCCATGGACAGTAATGTCGGCACTGGGTCAGGGCCTCTGACTCCCTTGCTTGATGGCTGTGGCCCTACAGAGCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
3UTR CCA 90 bp AAGGAGGGAAAAGCAGGAGTGAGGACTCCAGGAAGACCAGGGTCCTaGGCTGTTGGGATGAGCCCACAGTTGTCACAGGCAGGGCTGTGG +
Preference number: 1 (lower is better)
Translates to: KEGKAGVRTPGRPGS*AVGMSPQLSQAGLW
Trigger: CCACAGCCCTGCCTGTGACAACTGTGGGCTCATCCCAACAGCCCAGGACCCTGGTCTTCCTGGAGTCCTCACTCCTGCTTTTCCCTCCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
3UTR GCA 90 bp AGTGACCAGCTGAGTGCCCTTGACCTAGCCAAGGGCCCCATAGTATaGAGAGGGACCCAGCCTCTGTCCTGGGACTCCTCCAGAAAGAAA +
Preference number: 1 (lower is better)
Translates to: SDQLSALDLAKGPIV*RGTQPLSWDSSRKK
Trigger: TTTCTTTCTGGAGGAGTCCCAGGACAGAGGCTGGGTCCCTCTGCATACTATGGGGCCCTTGGCTAGGTCAAGGGCACTCAGCTGGTCACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
3UTR-3UTR GCA 90 bp GGACCCAAGTGGCCAGCCACGTGGCTTTGGGACGCCTGCGTCCAGGCTGGGTGGTCCTGCCAGGGAAGGTaGTGGTGGCCAGCCACCAGC +
Preference number: 2 (lower is better)
Translates to: GPKWPATWLWDACVQAGWSCQGR*WWPATS
Trigger: GCTGGTGGCTGGCCACCAGCACCTTCCCTGGCAGGA...CCACCCAGCCTGGACGCAGGCGTCCCAAAGCCACGTGGCTGGCCACTTGGGTCC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
3UTR-3UTR CCA 90 bp GGACCCAAGTGGCCAGCCACGTGGCTTTGGGACGCCTGCGTCCAGGCTGGGTGGCAGGGAAGGTGCTGGTaGCCAGCCACCAGCCCTAGG +
Preference number: 2 (lower is better)
Translates to: GPKWPATWLWDACVQAGWQGRCW*PATSPR
Trigger: CCTAGGGCTGGTGGCTGGCCACCAGCACCTTCCCTG...CCACCCAGCCTGGACGCAGGCGTCCCAAAGCCACGTGGCTGGCCACTTGGGTCC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
3UTR CAA 90 bp CTTGAGCCCTCGGGCACAAGGACCCAAGTGGCCAGCCACGTGGCTTaGGGACGCCTGCGTCCAGGCTGGGTGGAAGACCTGGGCCAAAGC +
Preference number: 2 (lower is better)
Translates to: LEPSGTRTQVASHVA*GRLRPGWVEDLGQS
Trigger: GCTTTGGCCCAGGTCTTCCACCCAGCCTGGACGCAGGCGTCCCAAAGCCACGTGGCTGGCCACTTGGGTCCTTGTGCCCGAGGGCTCAAG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
3UTR-3UTR CCA 90 bp AGGGACCACTGGACCTATATCAGAGGCCCAGCCCAAGGAGTGAAGCTCGGGGGCCTGGGCCGGGTAGGCTaGGGTCAGGGTAGGGCTCCC +
Preference number: 2 (lower is better)
Translates to: RDHWTYIRGPAQGVKLGGLGRVG*GQGRAP
Trigger: GGGAGCCCTACCCTGACCCCAGCCTACCCGGCCCAG...GCCCCCGAGCTTCACTCCTTGGGCTGGGCCTCTGATATAGGTCCAGTGGTCCCT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
3UTR-3UTR CCA 90 bp GGGCACAAGGACCCAAGTGGCCAGCCACGTGGCTTTGGGACGCCTGCGTCCAGGCCACCAGCCCTAGGCTaGAGGAAGGACCTAGCTAGC +
Preference number: 2 (lower is better)
Translates to: GHKDPSGQPRGFGTPASRPPALG*RKDLAS
Trigger: GCTAGCTAGGTCCTTCCTCCAGCCTAGGGCTGGTGG...CCTGGACGCAGGCGTCCCAAAGCCACGTGGCTGGCCACTTGGGTCCTTGTGCCC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
3UTR-3UTR CCA 90 bp CCAGATGCTGGGGTCACGAGCAAGGTACTCAGGGTGACTCCCTGGGTGGGCTGCCAGGGAAGGTGCTGGTaGCCAGCCACCAGCCCTAGG +
Preference number: 2 (lower is better)
Translates to: PDAGVTSKVLRVTPWVGCQGRCW*PATSPR
Trigger: CCTAGGGCTGGTGGCTGGCCACCAGCACCTTCCCTG...GCAGCCCACCCAGGGAGTCACCCTGAGTACCTTGCTCGTGACCCCAGCATCTGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
3UTR-3UTR CCA 90 bp CCAGATGCTGGGGTCACGAGCAAGGTACTCAGGGTGACTCCCTGGGTGGGCTGCTGCCAGGGAAGGTGCTaGTGGCCAGCCACCAGCCCT +
Preference number: 2 (lower is better)
Translates to: PDAGVTSKVLRVTPWVGCCQGRC*WPATSP
Trigger: AGGGCTGGTGGCTGGCCACCAGCACCTTCCCTGGCA...GCAGCCCACCCAGGGAGTCACCCTGAGTACCTTGCTCGTGACCCCAGCATCTGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
3UTR-3UTR TCA 90 bp AGGGACCACTGGACCTATATCAGAGGCCCAGCCCAAGGAGTGAAGCTCGGGGGCGCAAGGTACTCAGGGTaGCTCCCTGGGTGGGCTGCC +
Preference number: 2 (lower is better)
Translates to: RDHWTYIRGPAQGVKLGGARYSG*LPGWAA
Trigger: GGCAGCCCACCCAGGGAGTCACCCTGAGTACCTTGC...GCCCCCGAGCTTCACTCCTTGGGCTGGGCCTCTGATATAGGTCCAGTGGTCCCT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
3UTR-3UTR CCA 90 bp AACCAGACAGTGCCTCTGGAGGAGGCAGGGGTGGACTTGAGCCCTCGGGCACAACGCCTGCGTCCAGGCTaGGTGGAAGACCTGGGCCAA +
Preference number: 2 (lower is better)
Translates to: NQTVPLEEAGVDLSPRAQRLRPG*VEDLGQ
Trigger: TTGGCCCAGGTCTTCCACCCAGCCTGGACGCAGGCG...TTGTGCCCGAGGGCTCAAGTCCACCCCTGCCTCCTCCAGAGGCACTGTCTGGTT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
3UTR-3UTR CCA 90 bp AACCAGACAGTGCCTCTGGAGGAGGCAGGGGTGGACTTGAGCCCTCGGGCACAACCAGCCACGTGGCTTTaGGACGCCTGCGTCCAGGCT +
Preference number: 2 (lower is better)
Translates to: NQTVPLEEAGVDLSPRAQPATWL*DACVQA
Trigger: AGCCTGGACGCAGGCGTCCCAAAGCCACGTGGCTGG...TTGTGCCCGAGGGCTCAAGTCCACCCCTGCCTCCTCCAGAGGCACTGTCTGGTT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
3UTR-3UTR TCA 90 bp AGGGACCACTGGACCTATATCAGAGGCCCAGCCCAAGGAGTGAAGCTCGGGGGCACAGGTTCCCCCGGGTaGAATGAGGGGCACCAGACG +
Preference number: 2 (lower is better)
Translates to: RDHWTYIRGPAQGVKLGGTGSPG*NEGHQT
Trigger: CGTCTGGTGCCCCTCATTTCACCCGGGGGAACCTGT...GCCCCCGAGCTTCACTCCTTGGGCTGGGCCTCTGATATAGGTCCAGTGGTCCCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
3UTR-3UTR GCA 90 bp GGAGTCAGAGGCCCTGACCCAGTGCCGACATTACTGTCCATGGATGCTCCCAGGTCCTGCCAGGGAAGGTaGTGGTGGCCAGCCACCAGC +
Preference number: 2 (lower is better)
Translates to: GVRGPDPVPTLLSMDAPRSCQGR*WWPATS
Trigger: GCTGGTGGCTGGCCACCAGCACCTTCCCTGGCAGGA...CCTGGGAGCATCCATGGACAGTAATGTCGGCACTGGGTCAGGGCCTCTGACTCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
3UTR-3UTR GCA 90 bp AACCAGACAGTGCCTCTGGAGGAGGCAGGGGTGGACTTGAGCCCTCGGGCACAATGGCTTTGGGACGCCTaGGTCCAGGCTGGGTGGAAG +
Preference number: 2 (lower is better)
Translates to: NQTVPLEEAGVDLSPRAQWLWDA*VQAGWK
Trigger: CTTCCACCCAGCCTGGACGCAGGCGTCCCAAAGCCA...TTGTGCCCGAGGGCTCAAGTCCACCCCTGCCTCCTCCAGAGGCACTGTCTGGTT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
3UTR-3UTR CCA 90 bp AAGCTGATTCTGCTCTGTAGGGCCACAGCCATCAAGCAAGGGAGTCAGAGGCCCCTGGGCCGGGTAGGCTaGGGTCAGGGTAGGGCTCCC +
Preference number: 2 (lower is better)
Translates to: KLILLCRATAIKQGSQRPLGRVG*GQGRAP
Trigger: GGGAGCCCTACCCTGACCCCAGCCTACCCGGCCCAG...GGGCCTCTGACTCCCTTGCTTGATGGCTGTGGCCCTACAGAGCAGAATCAGCTT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
3UTR-3UTR CCA 90 bp AGGGACCACTGGACCTATATCAGAGGCCCAGCCCAAGGAGTGAAGCTCGGGGGCGCTGGGTGGAAGACCTaGGCCAAAGCTCCACCTCCC +
Preference number: 2 (lower is better)
Translates to: RDHWTYIRGPAQGVKLGGAGWKT*AKAPPP
Trigger: GGGAGGTGGAGCTTTGGCCCAGGTCTTCCACCCAGC...GCCCCCGAGCTTCACTCCTTGGGCTGGGCCTCTGATATAGGTCCAGTGGTCCCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
3UTR-3UTR GCA 90 bp GGAGTCAGAGGCCCTGACCCAGTGCCGACATTACTGTCCATGGATGCTCCCAGGTGGCTTTGGGACGCCTaGGTCCAGGCTGGGTGGAAG +
Preference number: 2 (lower is better)
Translates to: GVRGPDPVPTLLSMDAPRWLWDA*VQAGWK
Trigger: CTTCCACCCAGCCTGGACGCAGGCGTCCCAAAGCCA...CCTGGGAGCATCCATGGACAGTAATGTCGGCACTGGGTCAGGGCCTCTGACTCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
3UTR-3UTR CCA 90 bp AACCAGACAGTGCCTCTGGAGGAGGCAGGGGTGGACTTGAGCCCTCGGGCACAACACAGGGTGACATCATaGACAGCCCAGGCCCCCGAA +
Preference number: 2 (lower is better)
Translates to: NQTVPLEEAGVDLSPRAQHRVTS*TAQAPE
Trigger: TTCGGGGGCCTGGGCTGTCCATGATGTCACCCTGTG...TTGTGCCCGAGGGCTCAAGTCCACCCCTGCCTCCTCCAGAGGCACTGTCTGGTT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
3UTR-3UTR CCA 90 bp ATTGGGCACAGGGTGGAGAGTACCAGCTGCTTTAGGCATGGGTGCTGGCCCAGGAAGTGGCCAGCCACGTaGCTTTGGGACGCCTGCGTC +
Preference number: 2 (lower is better)
Translates to: IGHRVESTSCFRHGCWPRKWPAT*LWDACV
Trigger: GACGCAGGCGTCCCAAAGCCACGTGGCTGGCCACTT...CCTGGGCCAGCACCCATGCCTAAAGCAGCTGGTACTCTCCACCCTGTGCCCAAT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
3UTR-3UTR CCA 90 bp ATTGGGCACAGGGTGGAGAGTACCAGCTGCTTTAGGCATGGGTGCTGGCCCAGGCACAGGGTGACATCATaGACAGCCCAGGCCCCCGAA +
Preference number: 2 (lower is better)
Translates to: IGHRVESTSCFRHGCWPRHRVTS*TAQAPE
Trigger: TTCGGGGGCCTGGGCTGTCCATGATGTCACCCTGTG...CCTGGGCCAGCACCCATGCCTAAAGCAGCTGGTACTCTCCACCCTGTGCCCAAT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
3UTR-3UTR CCA 90 bp TCAGAGGCCCTGACCCAGTGCCGACATTACTGTCCATGGATGCTCCCAGGGCAGCCACCAGCCCTAGGCTaGAGGAAGGACCTAGCTAGC +
Preference number: 2 (lower is better)
Translates to: SEALTQCRHYCPWMLPGQPPALG*RKDLAS
Trigger: GCTAGCTAGGTCCTTCCTCCAGCCTAGGGCTGGTGG...CTGCCCTGGGAGCATCCATGGACAGTAATGTCGGCACTGGGTCAGGGCCTCTGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
3UTR-3UTR TCA 90 bp TCAAGCAAGGGAGTCAGAGGCCCTGACCCAGTGCCGACATTACTGTCCATGGATGCAAGGTACTCAGGGTaGCTCCCTGGGTGGGCTGCC +
Preference number: 2 (lower is better)
Translates to: SSKGVRGPDPVPTLLSMDARYSG*LPGWAA
Trigger: GGCAGCCCACCCAGGGAGTCACCCTGAGTACCTTGC...ATCCATGGACAGTAATGTCGGCACTGGGTCAGGGCCTCTGACTCCCTTGCTTGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
3UTR-3UTR GCA 90 bp AGGGACCACTGGACCTATATCAGAGGCCCAGCCCAAGGAGTGAAGCTCGGGGGCGGGTCTTCAGGGACATaGAACATTTCTGGGCCGGGT +
Preference number: 2 (lower is better)
Translates to: RDHWTYIRGPAQGVKLGGGSSGT*NISGPG
Trigger: ACCCGGCCCAGAAATGTTGCATGTCCCTGAAGACCC...GCCCCCGAGCTTCACTCCTTGGGCTGGGCCTCTGATATAGGTCCAGTGGTCCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
3UTR-3UTR GCA 90 bp AACCAGACAGTGCCTCTGGAGGAGGCAGGGGTGGACTTGAGCCCTCGGGCACAAAAAGCGCAACCCAGATaGTGGGGTCACGAGCAAGGT +
Preference number: 2 (lower is better)
Translates to: NQTVPLEEAGVDLSPRAQKAQPR*WGHEQG
Trigger: ACCTTGCTCGTGACCCCAGCATCTGGGTTGCGCTTT...TTGTGCCCGAGGGCTCAAGTCCACCCCTGCCTCCTCCAGAGGCACTGTCTGGTT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
3UTR-3UTR CCA 90 bp TCAAGCAAGGGAGTCAGAGGCCCTGACCCAGTGCCGACATTACTGTCCATGGATTGCCAGGGAAGGTGCTaGTGGCCAGCCACCAGCCCT +
Preference number: 2 (lower is better)
Translates to: SSKGVRGPDPVPTLLSMDCQGRC*WPATSP
Trigger: AGGGCTGGTGGCTGGCCACCAGCACCTTCCCTGGCA...ATCCATGGACAGTAATGTCGGCACTGGGTCAGGGCCTCTGACTCCCTTGCTTGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
3UTR-3UTR CCA 90 bp TCAAGCAAGGGAGTCAGAGGCCCTGACCCAGTGCCGACATTACTGTCCATGGATCCAGCCACGTGGCTTTaGGACGCCTGCGTCCAGGCT +
Preference number: 2 (lower is better)
Translates to: SSKGVRGPDPVPTLLSMDPATWL*DACVQA
Trigger: AGCCTGGACGCAGGCGTCCCAAAGCCACGTGGCTGG...ATCCATGGACAGTAATGTCGGCACTGGGTCAGGGCCTCTGACTCCCTTGCTTGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
3UTR CAA 90 bp ACCCAGTGCCGACATTACTGTCCATGGATGCTCCCAGGGCAGTGTTaGCATAGTGACCAGCTGAGTGCCCTTGACCTAGCCAAGGGCCCC +
Preference number: 2 (lower is better)
Translates to: TQCRHYCPWMLPGQC*HSDQLSALDLAKGP
Trigger: GGGGCCCTTGGCTAGGTCAAGGGCACTCAGCTGGTCACTATGCAAACACTGCCCTGGGAGCATCCATGGACAGTAATGTCGGCACTGGGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
3UTR-3UTR CCA 90 bp GAGAAGCTGATTCTGCTCTGTAGGGCCACAGCCATCAAGCAAGGGAGTCAGAGGGCTGGGTGGAAGACCTaGGCCAAAGCTCCACCTCCC +
Preference number: 2 (lower is better)
Translates to: EKLILLCRATAIKQGSQRAGWKT*AKAPPP
Trigger: GGGAGGTGGAGCTTTGGCCCAGGTCTTCCACCCAGC...CCTCTGACTCCCTTGCTTGATGGCTGTGGCCCTACAGAGCAGAATCAGCTTCTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
3UTR-3UTR CCA 90 bp AAGCTGATTCTGCTCTGTAGGGCCACAGCCATCAAGCAAGGGAGTCAGAGGCCCAGGGTCCTGGGCTGTTaGGATGAGCCCACAGTTGTC +
Preference number: 2 (lower is better)
Translates to: KLILLCRATAIKQGSQRPRVLGC*DEPTVV
Trigger: GACAACTGTGGGCTCATCCCAACAGCCCAGGACCCT...GGGCCTCTGACTCCCTTGCTTGATGGCTGTGGCCCTACAGAGCAGAATCAGCTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
3UTR-3UTR TCA 90 bp TCAGAGGCCCTGACCCAGTGCCGACATTACTGTCCATGGATGCTCCCAGGGCAGCAGAAAGAAAGAAATTaGAGGCATTGGTGGGCCCCC +
Preference number: 2 (lower is better)
Translates to: SEALTQCRHYCPWMLPGQQKERN*RHWWAP
Trigger: GGGGGCCCACCAATGCCTTCAATTTCTTTCTTTCTG...CTGCCCTGGGAGCATCCATGGACAGTAATGTCGGCACTGGGTCAGGGCCTCTGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
3UTR-3UTR GCA 90 bp AAGCTGATTCTGCTCTGTAGGGCCACAGCCATCAAGCAAGGGAGTCAGAGGCCCGGGTCTTCAGGGACATaGAACATTTCTGGGCCGGGT +
Preference number: 2 (lower is better)
Translates to: KLILLCRATAIKQGSQRPGSSGT*NISGPG
Trigger: ACCCGGCCCAGAAATGTTGCATGTCCCTGAAGACCC...GGGCCTCTGACTCCCTTGCTTGATGGCTGTGGCCCTACAGAGCAGAATCAGCTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
3UTR-3UTR CCA 90 bp GGAGTCAGAGGCCCTGACCCAGTGCCGACATTACTGTCCATGGATGCTCCCAGGACATTGGGCACAGGGTaGAGAGTACCAGCTGCTTTA +
Preference number: 2 (lower is better)
Translates to: GVRGPDPVPTLLSMDAPRTLGTG*RVPAAL
Trigger: TAAAGCAGCTGGTACTCTCCACCCTGTGCCCAATGT...CCTGGGAGCATCCATGGACAGTAATGTCGGCACTGGGTCAGGGCCTCTGACTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
3UTR-3UTR GCA 90 bp AAGCTGATTCTGCTCTGTAGGGCCACAGCCATCAAGCAAGGGAGTCAGAGGCCCATTACTGTCCATGGATaGTCCCAGGGCAGTGTTTGC +
Preference number: 2 (lower is better)
Translates to: KLILLCRATAIKQGSQRPITVHG*SQGSVC
Trigger: GCAAACACTGCCCTGGGAGCATCCATGGACAGTAAT...GGGCCTCTGACTCCCTTGCTTGATGGCTGTGGCCCTACAGAGCAGAATCAGCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
3UTR-3UTR CCA 90 bp AGGGTAGGTGGTGGGCAGAGCTCAAGCAGGACGGAGAAGCTGATTCTGCTCTGTACATTGGGCACAGGGTaGAGAGTACCAGCTGCTTTA +
Preference number: 2 (lower is better)
Translates to: RVGGGQSSSRTEKLILLCTLGTG*RVPAAL
Trigger: TAAAGCAGCTGGTACTCTCCACCCTGTGCCCAATGT...ACAGAGCAGAATCAGCTTCTCCGTCCTGCTTGAGCTCTGCCCACCACCTACCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
3UTR-3UTR CCA 90 bp GAGAAGCTGATTCTGCTCTGTAGGGCCACAGCCATCAAGCAAGGGAGTCAGAGGACCCAGCCTCTGTCCTaGGACTCCTCCAGAAAGAAA +
Preference number: 2 (lower is better)
Translates to: EKLILLCRATAIKQGSQRTQPLS*DSSRKK
Trigger: TTTCTTTCTGGAGGAGTCCCAGGACAGAGGCTGGGT...CCTCTGACTCCCTTGCTTGATGGCTGTGGCCCTACAGAGCAGAATCAGCTTCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
3UTR CCA 72 bp CGGGCACAAGGACCCAAGTGGCCAGCCACGTGGCTTTaGGACGCCTGCGTCCAGGCTGGGTGGAAGACCTGG +
Preference number: 3 (lower is better)
Translates to: RAQGPKWPATWL*DACVQAGWKTW
Trigger: CCAGGTCTTCCACCCAGCCTGGACGCAGGCGTCCCAAAGCCACGTGGCTGGCCACTTGGGTCCTTGTGCCCG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
3UTR GCA 72 bp GGACCCAAGTGGCCAGCCACGTGGCTTTGGGACGCCTaGGTCCAGGCTGGGTGGAAGACCTGGGCCAAAGCT +
Preference number: 3 (lower is better)
Translates to: GPKWPATWLWDA*VQAGWKTWAKA
Trigger: AGCTTTGGCCCAGGTCTTCCACCCAGCCTGGACGCAGGCGTCCCAAAGCCACGTGGCTGGCCACTTGGGTCC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
3UTR CCA 72 bp CTTCAGGGACATGCAACATTTCTGGGCCGGGTAGGCTaGGGTCAGGGTAGGGCTCCCGCAGCTGCCCGGCCT +
Preference number: 3 (lower is better)
Translates to: LQGHATFLGRVG*GQGRAPAAARP
Trigger: AGGCCGGGCAGCTGCGGGAGCCCTACCCTGACCCCAGCCTACCCGGCCCAGAAATGTTGCATGTCCCTGAAG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
3UTR-3UTR CAA 90 bp TCAGAGGCCCTGACCCAGTGCCGACATTACTGTCCATGGATGCTCCCAGGGCAGGCCAGCCACGTGGCTTaGGGACGCCTGCGTCCAGGC +
Preference number: 3 (lower is better)
Translates to: SEALTQCRHYCPWMLPGQASHVA*GRLRPG
Trigger: GCCTGGACGCAGGCGTCCCAAAGCCACGTGGCTGGC...CTGCCCTGGGAGCATCCATGGACAGTAATGTCGGCACTGGGTCAGGGCCTCTGA
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
3UTR CCA 72 bp AGAGCAGGAAGGAGTGGGTCCCTGCCAGCCCAAAGGTaGCAGGGTAGGTGGTGGGCAGAGCTCAAGCAGGAC +
Preference number: 3 (lower is better)
Translates to: RAGRSGSLPAQR*QGRWWAELKQD
Trigger: GTCCTGCTTGAGCTCTGCCCACCACCTACCCTGCCACCTTTGGGCTGGCAGGGACCCACTCCTTCCTGCTCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
3UTR-3UTR CAA 90 bp ATTGGGCACAGGGTGGAGAGTACCAGCTGCTTTAGGCATGGGTGCTGGCCCAGGGGGATGAGCCCACAGTaGTCACAGGCAGGGCTGTGG +
Preference number: 3 (lower is better)
Translates to: IGHRVESTSCFRHGCWPRGMSPQ*SQAGLW
Trigger: CCACAGCCCTGCCTGTGACAACTGTGGGCTCATCCC...CCTGGGCCAGCACCCATGCCTAAAGCAGCTGGTACTCTCCACCCTGTGCCCAAT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
3UTR GCA 72 bp CTGAGTGCCCTTGACCTAGCCAAGGGCCCCATAGTATaGAGAGGGACCCAGCCTCTGTCCTGGGACTCCTCC +
Preference number: 3 (lower is better)
Translates to: LSALDLAKGPIV*RGTQPLSWDSS
Trigger: GGAGGAGTCCCAGGACAGAGGCTGGGTCCCTCTGCATACTATGGGGCCCTTGGCTAGGTCAAGGGCACTCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
3UTR CCA 72 bp GGGTCCCTGCCAGCCCAAAGGTGGCAGGGTAGGTGGTaGGCAGAGCTCAAGCAGGACGGAGAAGCTGATTCT +
Preference number: 3 (lower is better)
Translates to: GSLPAQRWQGRW*AELKQDGEADS
Trigger: AGAATCAGCTTCTCCGTCCTGCTTGAGCTCTGCCCACCACCTACCCTGCCACCTTTGGGCTGGCAGGGACCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
3UTR CCA 72 bp AGTGGGTCCCTGCCAGCCCAAAGGTGGCAGGGTAGGTaGTGGGCAGAGCTCAAGCAGGACGGAGAAGCTGAT +
Preference number: 3 (lower is better)
Translates to: SGSLPAQRWQGR*WAELKQDGEAD
Trigger: ATCAGCTTCTCCGTCCTGCTTGAGCTCTGCCCACCACCTACCCTGCCACCTTTGGGCTGGCAGGGACCCACT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
3UTR TCA 72 bp AGCATCAGGGCAGCCGGAAGGAGGGAAAAGCAGGAGTaGGGACTCCAGGAAGACCAGGGTCCTGGGCTGTTG +
Preference number: 3 (lower is better)
Translates to: SIRAAGRREKQE*GLQEDQGPGLL
Trigger: CAACAGCCCAGGACCCTGGTCTTCCTGGAGTCCTCACTCCTGCTTTTCCCTCCTTCCGGCTGCCCTGATGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
3UTR GCA 72 bp CTGTGGCTAGATGAGGGGCTAGGGTCTTCAGGGACATaGAACATTTCTGGGCCGGGTAGGCTGGGGTCAGGG +
Preference number: 3 (lower is better)
Translates to: LWLDEGLGSSGT*NISGPGRLGSG
Trigger: CCCTGACCCCAGCCTACCCGGCCCAGAAATGTTGCATGTCCCTGAAGACCCTAGCCCCTCATCTAGCCACAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
3UTR GCA 72 bp GCTCCACCTCCCAGCACCATCAAAGCGCAACCCAGATaGTGGGGTCACGAGCAAGGTACTCAGGGTGACTCC +
Preference number: 3 (lower is better)
Translates to: APPPSTIKAQPR*WGHEQGTQGDS
Trigger: GGAGTCACCCTGAGTACCTTGCTCGTGACCCCAGCATCTGGGTTGCGCTTTGATGGTGCTGGGAGGTGGAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
3UTR CCA 72 bp AGTGAGGACTCCAGGAAGACCAGGGTCCTGGGCTGTTaGGATGAGCCCACAGTTGTCACAGGCAGGGCTGTG +
Preference number: 3 (lower is better)
Translates to: SEDSRKTRVLGC*DEPTVVTGRAV
Trigger: CACAGCCCTGCCTGTGACAACTGTGGGCTCATCCCAACAGCCCAGGACCCTGGTCTTCCTGGAGTCCTCACT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
3UTR GCA 72 bp AGCCATCAAGCAAGGGAGTCAGAGGCCCTGACCCAGTaGCGACATTACTGTCCATGGATGCTCCCAGGGCAG +
Preference number: 3 (lower is better)
Translates to: SHQARESEALTQ*RHYCPWMLPGQ
Trigger: CTGCCCTGGGAGCATCCATGGACAGTAATGTCGGCACTGGGTCAGGGCCTCTGACTCCCTTGCTTGATGGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
3UTR CCA 72 bp TCAGAGGCCCTGACCCAGTGCCGACATTACTGTCCATaGATGCTCCCAGGGCAGTGTTTGCATAGTGACCAG +
Preference number: 3 (lower is better)
Translates to: SEALTQCRHYCP*MLPGQCLHSDQ
Trigger: CTGGTCACTATGCAAACACTGCCCTGGGAGCATCCATGGACAGTAATGTCGGCACTGGGTCAGGGCCTCTGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
3UTR-3UTR CAA 90 bp TCAAGCAAGGGAGTCAGAGGCCCTGACCCAGTGCCGACATTACTGTCCATGGATCTAGCAGGCCAGGGTTaGGGGACAGTAAACATAGGG +
Preference number: 3 (lower is better)
Translates to: SSKGVRGPDPVPTLLSMDLAGQG*GTVNIG
Trigger: CCCTATGTTTACTGTCCCCAAACCCTGGCCTGCTAG...ATCCATGGACAGTAATGTCGGCACTGGGTCAGGGCCTCTGACTCCCTTGCTTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR TCA 90 bp GGGCACAAGGACCCAAGTGGCCAGCCACGTGGCTTTGGGACGCCTGCGTCCAGGGCACGCTCTCGCCCTTaGCTCCACGCTCCCGAGAGT +
Preference number: 4 (lower is better)
Translates to: GHKDPSGQPRGFGTPASRARSRP*LHAPES
Trigger: ACTCTCGGGAGCGTGGAGTCAAGGGCGAGAGCGTGC...CCTGGACGCAGGCGTCCCAAAGCCACGTGGCTGGCCACTTGGGTCCTTGTGCCC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR GCA 90 bp GGGCACAAGGACCCAAGTGGCCAGCCACGTGGCTTTGGGACGCCTGCGTCCAGGGCGCTGGCACTTCTGTaGCCTCCAGCGTCTTGGGGG +
Preference number: 4 (lower is better)
Translates to: GHKDPSGQPRGFGTPASRALALL*PPASWG
Trigger: CCCCCAAGACGCTGGAGGGCACAGAAGTGCCAGCGC...CCTGGACGCAGGCGTCCCAAAGCCACGTGGCTGGCCACTTGGGTCCTTGTGCCC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR GCA 90 bp GGACCCAAGTGGCCAGCCACGTGGCTTTGGGACGCCTGCGTCCAGGCTGGGTGGGTCACGGGTACGAGCTaGCTGATGTGCCAGCAGCCC +
Preference number: 4 (lower is better)
Translates to: GPKWPATWLWDACVQAGWVTGTS*LMCQQP
Trigger: GGGCTGCTGGCACATCAGGCAGCTCGTACCCGTGAC...CCACCCAGCCTGGACGCAGGCGTCCCAAAGCCACGTGGCTGGCCACTTGGGTCC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR CCA 90 bp GGGCACAAGGACCCAAGTGGCCAGCCACGTGGCTTTGGGACGCCTGCGTCCAGGGCCTCCTCTACTTCATaGGGCCGGTGCCTTGGGGCT +
Preference number: 4 (lower is better)
Translates to: GHKDPSGQPRGFGTPASRASSTS*GRCLGA
Trigger: AGCCCCAAGGCACCGGCCCCATGAAGTAGAGGAGGC...CCTGGACGCAGGCGTCCCAAAGCCACGTGGCTGGCCACTTGGGTCCTTGTGCCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR TCA 90 bp GGGCACAAGGACCCAAGTGGCCAGCCACGTGGCTTTGGGACGCCTGCGTCCAGGGCAGACATTCCGAGATaGCGGTGTCGCCCTGGCACT +
Preference number: 4 (lower is better)
Translates to: GHKDPSGQPRGFGTPASRADIPR*RCRPGT
Trigger: AGTGCCAGGGCGACACCGTCATCTCGGAATGTCTGC...CCTGGACGCAGGCGTCCCAAAGCCACGTGGCTGGCCACTTGGGTCCTTGTGCCC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR GCA 90 bp GCAACATTTCTGGGCCGGGTAGGCTGGGGTCAGGGTAGGGCTCCCGCAGCTGCCACTTCATGGGGCCGGTaGCTTGGGGCTTGGGCATTC +
Preference number: 4 (lower is better)
Translates to: ATFLGRVGWGQGRAPAAATSWGR*LGAWAF
Trigger: GAATGCCCAAGCCCCAAGGCACCGGCCCCATGAAGT...GGCAGCTGCGGGAGCCCTACCCTGACCCCAGCCTACCCGGCCCAGAAATGTTGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR GCA 90 bp CCAGATGCTGGGGTCACGAGCAAGGTACTCAGGGTGACTCCCTGGGTGGGCTGCTCCATGGGCCAGCGCTaGAGCCAGTGCTGGGAGGTC +
Preference number: 4 (lower is better)
Translates to: PDAGVTSKVLRVTPWVGCSMGQR*SQCWEV
Trigger: GACCTCCCAGCACTGGCTGCAGCGCTGGCCCATGGA...GCAGCCCACCCAGGGAGTCACCCTGAGTACCTTGCTCGTGACCCCAGCATCTGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR CCA 90 bp AGGGACCACTGGACCTATATCAGAGGCCCAGCCCAAGGAGTGAAGCTCGGGGGCTGCCCTCCAGCGTCTTaGGGGTTCCCGGGCTGGTGC +
Preference number: 4 (lower is better)
Translates to: RDHWTYIRGPAQGVKLGGCPPAS*GFPGWC
Trigger: GCACCAGCCCGGGAACCCCCAAGACGCTGGAGGGCA...GCCCCCGAGCTTCACTCCTTGGGCTGGGCCTCTGATATAGGTCCAGTGGTCCCT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
3UTR CAA 72 bp AACCAGACAGTGCCTCTGGAGGAGGCAGGGGTGGACTaGAGCCCTCGGGCACAAGGACCCAAGTGGCCAGCC +
Preference number: 4 (lower is better)
Translates to: NQTVPLEEAGVD*SPRAQGPKWPA
Trigger: GGCTGGCCACTTGGGTCCTTGTGCCCGAGGGCTCAAGTCCACCCCTGCCTCCTCCAGAGGCACTGTCTGGTT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR TCA 90 bp AGGGACCACTGGACCTATATCAGAGGCCCAGCCCAAGGAGTGAAGCTCGGGGGCTCGCCCTGGCACTGCTaGGACAGGTCTCGGACACCG +
Preference number: 4 (lower is better)
Translates to: RDHWTYIRGPAQGVKLGGSPWHC*DRSRTP
Trigger: CGGTGTCCGAGACCTGTCTCAGCAGTGCCAGGGCGA...GCCCCCGAGCTTCACTCCTTGGGCTGGGCCTCTGATATAGGTCCAGTGGTCCCT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR TCA 90 bp AGGGACCACTGGACCTATATCAGAGGCCCAGCCCAAGGAGTGAAGCTCGGGGGCGCACGCTCTCGCCCTTaGCTCCACGCTCCCGAGAGT +
Preference number: 4 (lower is better)
Translates to: RDHWTYIRGPAQGVKLGGARSRP*LHAPES
Trigger: ACTCTCGGGAGCGTGGAGTCAAGGGCGAGAGCGTGC...GCCCCCGAGCTTCACTCCTTGGGCTGGGCCTCTGATATAGGTCCAGTGGTCCCT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR TCA 90 bp CCAGATGCTGGGGTCACGAGCAAGGTACTCAGGGTGACTCCCTGGGTGGGCTGCGCAGCACACCCAAGTTaGTGCTGGCCCAGCGGGGAT +
Preference number: 4 (lower is better)
Translates to: PDAGVTSKVLRVTPWVGCAAHPS*CWPSGD
Trigger: ATCCCCGCTGGGCCAGCATCAACTTGGGTGTGCTGC...GCAGCCCACCCAGGGAGTCACCCTGAGTACCTTGCTCGTGACCCCAGCATCTGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR GCA 90 bp CTAGCCAAGGGCCCCATAGTATGCAGAGGGACCCAGCCTCTGTCCTGGGACTCCGCGCTGGCACTTCTGTaGCCTCCAGCGTCTTGGGGG +
Preference number: 4 (lower is better)
Translates to: LAKGPIVCRGTQPLSWDSALALL*PPASWG
Trigger: CCCCCAAGACGCTGGAGGGCACAGAAGTGCCAGCGC...GGAGTCCCAGGACAGAGGCTGGGTCCCTCTGCATACTATGGGGCCCTTGGCTAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR GCA 90 bp GGACATGCAACATTTCTGGGCCGGGTAGGCTGGGGTCAGGGTAGGGCTCCCGCAGCCAGCAGCCCAGGATaGAGCTCACGCACATCTGCC +
Preference number: 4 (lower is better)
Translates to: GHATFLGRVGWGQGRAPAASSPG*SSRTSA
Trigger: GGCAGATGTGCGTGAGCTGCATCCTGGGCTGCTGGC...TGCGGGAGCCCTACCCTGACCCCAGCCTACCCGGCCCAGAAATGTTGCATGTCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR GCA 90 bp GCAACATTTCTGGGCCGGGTAGGCTGGGGTCAGGGTAGGGCTCCCGCAGCTGCCGGTCTTGCCCTCATCTaGTGCATCGGCCCAGTTGAC +
Preference number: 4 (lower is better)
Translates to: ATFLGRVGWGQGRAPAAAGLALI*CIGPVD
Trigger: GTCAACTGGGCCGATGCAGCAGATGAGGGCAAGACC...GGCAGCTGCGGGAGCCCTACCCTGACCCCAGCCTACCCGGCCCAGAAATGTTGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR CCA 90 bp GGGCACAAGGACCCAAGTGGCCAGCCACGTGGCTTTGGGACGCCTGCGTCCAGGTGCCGCACCGATCTCTaGGCCTGGTCAAACAGGATC +
Preference number: 4 (lower is better)
Translates to: GHKDPSGQPRGFGTPASRCRTDL*AWSNRI
Trigger: GATCCTGTTTGACCAGGCCCAGAGATCGGTGCGGCA...CCTGGACGCAGGCGTCCCAAAGCCACGTGGCTGGCCACTTGGGTCCTTGTGCCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR CCA 90 bp GGACCCAAGTGGCCAGCCACGTGGCTTTGGGACGCCTGCGTCCAGGCTGGGTGGGAAAAGTCCCGTTGCTaGATGGCAGCATGCTTGCGC +
Preference number: 4 (lower is better)
Translates to: GPKWPATWLWDACVQAGWEKSRC*MAACLR
Trigger: GCGCAAGCATGCTGCCATCCAGCAACGGGACTTTTC...CCACCCAGCCTGGACGCAGGCGTCCCAAAGCCACGTGGCTGGCCACTTGGGTCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079031.6
CDS-3UTR CCA 90 bp GCAACATTTCTGGGCCGGGTAGGCTGGGGTCAGGGTAGGGCTCCCGCAGCTGCCCGTACCTTAGAGCAGTaGACGCCCAAGCTCCTGTGG +
Preference number: 4 (lower is better)
Translates to: ATFLGRVGWGQGRAPAAARTLEQ*TPKLLW
Trigger: CCACAGGAGCTTGGGCGTCCACTGCTCTAAGGTACG...GGCAGCTGCGGGAGCCCTACCCTGACCCCAGCCTACCCGGCCCAGAAATGTTGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR TCA 90 bp ATTGGGCACAGGGTGGAGAGTACCAGCTGCTTTAGGCATGGGTGCTGGCCCAGGTCGCCCTGGCACTGCTaGGACAGGTCTCGGACACCG +
Preference number: 4 (lower is better)
Translates to: IGHRVESTSCFRHGCWPRSPWHC*DRSRTP
Trigger: CGGTGTCCGAGACCTGTCTCAGCAGTGCCAGGGCGA...CCTGGGCCAGCACCCATGCCTAAAGCAGCTGGTACTCTCCACCCTGTGCCCAAT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR TCA 90 bp GGACCCAAGTGGCCAGCCACGTGGCTTTGGGACGCCTGCGTCCAGGCTGGGTGGTGGCCTGGAGGACATTaGTCTGCAGCACATAGTCCA +
Preference number: 4 (lower is better)
Translates to: GPKWPATWLWDACVQAGWWPGGH*SAAHSP
Trigger: TGGACTATGTGCTGCAGATCAATGTCCTCCAGGCCA...CCACCCAGCCTGGACGCAGGCGTCCCAAAGCCACGTGGCTGGCCACTTGGGTCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR TCA 90 bp CCAGATGCTGGGGTCACGAGCAAGGTACTCAGGGTGACTCCCTGGGTGGGCTGCCACCCTCTTCCTCGGTaGCACTGTCCACCACTGAGC +
Preference number: 4 (lower is better)
Translates to: PDAGVTSKVLRVTPWVGCHPLPR*HCPPLS
Trigger: GCTCAGTGGTGGACAGTGTCACCGAGGAAGAGGGTG...GCAGCCCACCCAGGGAGTCACCCTGAGTACCTTGCTCGTGACCCCAGCATCTGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR GCA 90 bp GGACCCAAGTGGCCAGCCACGTGGCTTTGGGACGCCTGCGTCCAGGCTGGGTGGCTGGTCCAACTCAGCTaGCAGCTTCTTCATGTAGGG +
Preference number: 4 (lower is better)
Translates to: GPKWPATWLWDACVQAGWLVQLS*QLLHVG
Trigger: CCCTACATGAAGAAGCTGGCAGCTGAGTTGGACCAG...CCACCCAGCCTGGACGCAGGCGTCCCAAAGCCACGTGGCTGGCCACTTGGGTCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR GCA 90 bp GGACATGCAACATTTCTGGGCCGGGTAGGCTGGGGTCAGGGTAGGGCTCCCGCAACACTCTGCACACGCTaGAGCACGCTCTCGCCCTTG +
Preference number: 4 (lower is better)
Translates to: GHATFLGRVGWGQGRAPATLCTR*STLSPL
Trigger: CAAGGGCGAGAGCGTGCTGCAGCGTGTGCAGAGTGT...TGCGGGAGCCCTACCCTGACCCCAGCCTACCCGGCCCAGAAATGTTGCATGTCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR GCA 90 bp CTAGCCAAGGGCCCCATAGTATGCAGAGGGACCCAGCCTCTGTCCTGGGACTCCGCCAGCAGCCCAGGATaGAGCTCACGCACATCTGCC +
Preference number: 4 (lower is better)
Translates to: LAKGPIVCRGTQPLSWDSASSPG*SSRTSA
Trigger: GGCAGATGTGCGTGAGCTGCATCCTGGGCTGCTGGC...GGAGTCCCAGGACAGAGGCTGGGTCCCTCTGCATACTATGGGGCCCTTGGCTAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR GCA 90 bp AGGGACCACTGGACCTATATCAGAGGCCCAGCCCAAGGAGTGAAGCTCGGGGGCGTCACGGGTACGAGCTaGCTGATGTGCCAGCAGCCC +
Preference number: 4 (lower is better)
Translates to: RDHWTYIRGPAQGVKLGGVTGTS*LMCQQP
Trigger: GGGCTGCTGGCACATCAGGCAGCTCGTACCCGTGAC...GCCCCCGAGCTTCACTCCTTGGGCTGGGCCTCTGATATAGGTCCAGTGGTCCCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR CCA 90 bp GCAACATTTCTGGGCCGGGTAGGCTGGGGTCAGGGTAGGGCTCCCGCAGCTGCCAACTGCGATGGTCAGTaGGTCCTGTTGCTCCTGGTC +
Preference number: 4 (lower is better)
Translates to: ATFLGRVGWGQGRAPAAANCDGQ*VLLLLV
Trigger: GACCAGGAGCAACAGGACCCACTGACCATCGCAGTT...GGCAGCTGCGGGAGCCCTACCCTGACCCCAGCCTACCCGGCCCAGAAATGTTGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR TCA 90 bp AACCAGACAGTGCCTCTGGAGGAGGCAGGGGTGGACTTGAGCCCTCGGGCACAAGACACTGTCCACCACTaGGCCTGTGCCGAAGGCAAG +
Preference number: 4 (lower is better)
Translates to: NQTVPLEEAGVDLSPRAQDTVHH*ACAEGK
Trigger: CTTGCCTTCGGCACAGGCTCAGTGGTGGACAGTGTC...TTGTGCCCGAGGGCTCAAGTCCACCCCTGCCTCCTCCAGAGGCACTGTCTGGTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR TCA 90 bp AGGGACCACTGGACCTATATCAGAGGCCCAGCCCAAGGAGTGAAGCTCGGGGGCCCAGGTGGAGGCCAATaGACTCCTGGATGCACCTGC +
Preference number: 4 (lower is better)
Translates to: RDHWTYIRGPAQGVKLGGPGGGQ*TPGCTC
Trigger: GCAGGTGCATCCAGGAGTTCATTGGCCTCCACCTGG...GCCCCCGAGCTTCACTCCTTGGGCTGGGCCTCTGATATAGGTCCAGTGGTCCCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR GCA 90 bp AACCAGACAGTGCCTCTGGAGGAGGCAGGGGTGGACTTGAGCCCTCGGGCACAAACTTCATGGGGCCGGTaGCTTGGGGCTTGGGCATTC +
Preference number: 4 (lower is better)
Translates to: NQTVPLEEAGVDLSPRAQTSWGR*LGAWAF
Trigger: GAATGCCCAAGCCCCAAGGCACCGGCCCCATGAAGT...TTGTGCCCGAGGGCTCAAGTCCACCCCTGCCTCCTCCAGAGGCACTGTCTGGTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR GCA 90 bp GGACCCAAGTGGCCAGCCACGTGGCTTTGGGACGCCTGCGTCCAGGCTGGGTGGCTCTCGCTTTTCCACTaGAGAGTCGATCACAAGCTG +
Preference number: 4 (lower is better)
Translates to: GPKWPATWLWDACVQAGWLSLFH*RVDHKL
Trigger: CAGCTTGTGATCGACTCTGCAGTGGAAAAGCGAGAG...CCACCCAGCCTGGACGCAGGCGTCCCAAAGCCACGTGGCTGGCCACTTGGGTCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR GCA 90 bp GGGCACAAGGACCCAAGTGGCCAGCCACGTGGCTTTGGGACGCCTGCGTCCAGGGGATGGCAGCATGCTTaGGCTCCATCTCTCGCTTTT +
Preference number: 4 (lower is better)
Translates to: GHKDPSGQPRGFGTPASRGWQHA*APSLAF
Trigger: AAAAGCGAGAGATGGAGCGCAAGCATGCTGCCATCC...CCTGGACGCAGGCGTCCCAAAGCCACGTGGCTGGCCACTTGGGTCCTTGTGCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR GCA 90 bp GGGCACAAGGACCCAAGTGGCCAGCCACGTGGCTTTGGGACGCCTGCGTCCAGGAGCCCCAGCAGCCCCTaGATCAAAGTAAGAGAAGAG +
Preference number: 4 (lower is better)
Translates to: GHKDPSGQPRGFGTPASRSPSSP*IKVREE
Trigger: CTCTTCTCTTACTTTGATGCAGGGGCTGCTGGGGCT...CCTGGACGCAGGCGTCCCAAAGCCACGTGGCTGGCCACTTGGGTCCTTGTGCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR GCA 90 bp CTAGCCAAGGGCCCCATAGTATGCAGAGGGACCCAGCCTCTGTCCTGGGACTCCCAGCTCACGCACATCTaGCAAGCTCCAGGCCTCTGC +
Preference number: 4 (lower is better)
Translates to: LAKGPIVCRGTQPLSWDSQLTHI*QAPGLC
Trigger: GCAGAGGCCTGGAGCTTGGCAGATGTGCGTGAGCTG...GGAGTCCCAGGACAGAGGCTGGGTCCCTCTGCATACTATGGGGCCCTTGGCTAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR GCA 90 bp AGGGACCACTGGACCTATATCAGAGGCCCAGCCCAAGGAGTGAAGCTCGGGGGCACGAGCTGCCTGATGTaGCAGCAGCCCAGGATGCAG +
Preference number: 4 (lower is better)
Translates to: RDHWTYIRGPAQGVKLGGTSCLM*QQPRMQ
Trigger: CTGCATCCTGGGCTGCTGGCACATCAGGCAGCTCGT...GCCCCCGAGCTTCACTCCTTGGGCTGGGCCTCTGATATAGGTCCAGTGGTCCCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR GCA 90 bp GGACATGCAACATTTCTGGGCCGGGTAGGCTGGGGTCAGGGTAGGGCTCCCGCAGGTCTTGCCCTCATCTaGTGCATCGGCCCAGTTGAC +
Preference number: 4 (lower is better)
Translates to: GHATFLGRVGWGQGRAPAGLALI*CIGPVD
Trigger: GTCAACTGGGCCGATGCAGCAGATGAGGGCAAGACC...TGCGGGAGCCCTACCCTGACCCCAGCCTACCCGGCCCAGAAATGTTGCATGTCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR CCA 90 bp GGACCCAAGTGGCCAGCCACGTGGCTTTGGGACGCCTGCGTCCAGGCTGGGTGGCCCGAGAGTCCGTGGTaGAATCAATGCTACTTGTTG +
Preference number: 4 (lower is better)
Translates to: GPKWPATWLWDACVQAGWPESPW*NQCYLL
Trigger: CAACAAGTAGCATTGATTCCACCACGGACTCTCGGG...CCACCCAGCCTGGACGCAGGCGTCCCAAAGCCACGTGGCTGGCCACTTGGGTCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR TCA 90 bp GGACATGCAACATTTCTGGGCCGGGTAGGCTGGGGTCAGGGTAGGGCTCCCGCAAGCGCGGCGAGTCCTTaGTGCATTCCTCGAACTCTA +
Preference number: 4 (lower is better)
Translates to: GHATFLGRVGWGQGRAPASAASP*CIPRTL
Trigger: TAGAGTTCGAGGAATGCATCAAGGACTCGCCGCGCT...TGCGGGAGCCCTACCCTGACCCCAGCCTACCCGGCCCAGAAATGTTGCATGTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR TCA 90 bp GCAACATTTCTGGGCCGGGTAGGCTGGGGTCAGGGTAGGGCTCCCGCAGCTGCCGGATCGTGTGATAGTTaGCCATCTCCTGTAGGCTGT +
Preference number: 4 (lower is better)
Translates to: ATFLGRVGWGQGRAPAAAGSCDS*PSPVGC
Trigger: ACAGCCTACAGGAGATGGTCAACTATCACACGATCC...GGCAGCTGCGGGAGCCCTACCCTGACCCCAGCCTACCCGGCCCAGAAATGTTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR TCA 90 bp GCAACATTTCTGGGCCGGGTAGGCTGGGGTCAGGGTAGGGCTCCCGCAGCTGCCTCCGCACATCCTCTTTaGCAAAGTTGTGGAGCTGCT +
Preference number: 4 (lower is better)
Translates to: ATFLGRVGWGQGRAPAAASAHPL*QSCGAA
Trigger: AGCAGCTCCACAACTTTGTCAAAGAGGATGTGCGGA...GGCAGCTGCGGGAGCCCTACCCTGACCCCAGCCTACCCGGCCCAGAAATGTTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR TCA 90 bp GGAGTCAGAGGCCCTGACCCAGTGCCGACATTACTGTCCATGGATGCTCCCAGGGACACTGTCCACCACTaGGCCTGTGCCGAAGGCAAG +
Preference number: 4 (lower is better)
Translates to: GVRGPDPVPTLLSMDAPRDTVHH*ACAEGK
Trigger: CTTGCCTTCGGCACAGGCTCAGTGGTGGACAGTGTC...CCTGGGAGCATCCATGGACAGTAATGTCGGCACTGGGTCAGGGCCTCTGACTCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR GCA 90 bp GCAACATTTCTGGGCCGGGTAGGCTGGGGTCAGGGTAGGGCTCCCGCAGCTGCCTTCTCCGAGTCAGCCTaGAGCATACAGCTCTTGGTA +
Preference number: 4 (lower is better)
Translates to: ATFLGRVGWGQGRAPAAAFSESA*SIQLLV
Trigger: TACCAAGAGCTGTATGCTGCAGGCTGACTCGGAGAA...GGCAGCTGCGGGAGCCCTACCCTGACCCCAGCCTACCCGGCCCAGAAATGTTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR GCA 90 bp AAGCTGATTCTGCTCTGTAGGGCCACAGCCATCAAGCAAGGGAGTCAGAGGCCCTCCATGGGCCAGCGCTaGAGCCAGTGCTGGGAGGTC +
Preference number: 4 (lower is better)
Translates to: KLILLCRATAIKQGSQRPSMGQR*SQCWEV
Trigger: GACCTCCCAGCACTGGCTGCAGCGCTGGCCCATGGA...GGGCCTCTGACTCCCTTGCTTGATGGCTGTGGCCCTACAGAGCAGAATCAGCTT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR CCA 90 bp GCAACATTTCTGGGCCGGGTAGGCTGGGGTCAGGGTAGGGCTCCCGCAGCTGCCTGGAAGAAGCTGTACTaGGCATGCATGAAGGACAGC +
Preference number: 4 (lower is better)
Translates to: ATFLGRVGWGQGRAPAAAWKKLY*ACMKDS
Trigger: GCTGTCCTTCATGCATGCCCAGTACAGCTTCTTCCA...GGCAGCTGCGGGAGCCCTACCCTGACCCCAGCCTACCCGGCCCAGAAATGTTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR CCA 90 bp AGGGACCACTGGACCTATATCAGAGGCCCAGCCCAAGGAGTGAAGCTCGGGGGCTTGACTTCAGCTCCATaGGCCAGCGCTGCAGCCAGT +
Preference number: 4 (lower is better)
Translates to: RDHWTYIRGPAQGVKLGGLTSAP*ASAAAS
Trigger: ACTGGCTGCAGCGCTGGCCCATGGAGCTGAAGTCAA...GCCCCCGAGCTTCACTCCTTGGGCTGGGCCTCTGATATAGGTCCAGTGGTCCCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR CCA 90 bp CTAGCCAAGGGCCCCATAGTATGCAGAGGGACCCAGCCTCTGTCCTGGGACTCCTTGACTTCAGCTCCATaGGCCAGCGCTGCAGCCAGT +
Preference number: 4 (lower is better)
Translates to: LAKGPIVCRGTQPLSWDSLTSAP*ASAAAS
Trigger: ACTGGCTGCAGCGCTGGCCCATGGAGCTGAAGTCAA...GGAGTCCCAGGACAGAGGCTGGGTCCCTCTGCATACTATGGGGCCCTTGGCTAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR CCA 90 bp GGACATGCAACATTTCTGGGCCGGGTAGGCTGGGGTCAGGGTAGGGCTCCCGCATACAGCCTGCACCAATaGGGTCTTGCCCTCATCTGC +
Preference number: 4 (lower is better)
Translates to: GHATFLGRVGWGQGRAPAYSLHQ*GLALIC
Trigger: GCAGATGAGGGCAAGACCCCATTGGTGCAGGCTGTA...TGCGGGAGCCCTACCCTGACCCCAGCCTACCCGGCCCAGAAATGTTGCATGTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR CCA 90 bp AGGAGTGAGGACTCCAGGAAGACCAGGGTCCTGGGCTGTTGGGATGAGCCCACAGGGTCCTGTTGCTCCTaGTCCAGGGCATGCTGGTCA +
Preference number: 4 (lower is better)
Translates to: RSEDSRKTRVLGCWDEPTGSCCS*SRACWS
Trigger: TGACCAGCATGCCCTGGACCAGGAGCAACAGGACCC...TGTGGGCTCATCCCAACAGCCCAGGACCCTGGTCTTCCTGGAGTCCTCACTCCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
3UTR CAA 72 bp AGACCAGGGTCCTGGGCTGTTGGGATGAGCCCACAGTaGTCACAGGCAGGGCTGTGGCTAGATGAGGGGCTA +
Preference number: 4 (lower is better)
Translates to: RPGSWAVGMSPQ*SQAGLWLDEGL
Trigger: TAGCCCCTCATCTAGCCACAGCCCTGCCTGTGACAACTGTGGGCTCATCCCAACAGCCCAGGACCCTGGTCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR TCA 90 bp GCAACATTTCTGGGCCGGGTAGGCTGGGGTCAGGGTAGGGCTCCCGCAGCTGCCCATTGCTGGCTCTCTTaGAGAGATAGCCCTCCATTA +
Preference number: 4 (lower is better)
Translates to: ATFLGRVGWGQGRAPAAAHCWLS*RDSPPL
Trigger: TAATGGAGGGCTATCTCTTCAAGAGAGCCAGCAATG...GGCAGCTGCGGGAGCCCTACCCTGACCCCAGCCTACCCGGCCCAGAAATGTTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR TCA 90 bp CTAGCCAAGGGCCCCATAGTATGCAGAGGGACCCAGCCTCTGTCCTGGGACTCCACCAGCTGGCTGTTTTaGATGGAGAACCACCGTCGG +
Preference number: 4 (lower is better)
Translates to: LAKGPIVCRGTQPLSWDSTSWLF*MENHRR
Trigger: CCGACGGTGGTTCTCCATTCAAAACAGCCAGCTGGT...GGAGTCCCAGGACAGAGGCTGGGTCCCTCTGCATACTATGGGGCCCTTGGCTAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR TCA 90 bp AAGCTGATTCTGCTCTGTAGGGCCACAGCCATCAAGCAAGGGAGTCAGAGGCCCGCAGCACACCCAAGTTaGTGCTGGCCCAGCGGGGAT +
Preference number: 4 (lower is better)
Translates to: KLILLCRATAIKQGSQRPAAHPS*CWPSGD
Trigger: ATCCCCGCTGGGCCAGCATCAACTTGGGTGTGCTGC...GGGCCTCTGACTCCCTTGCTTGATGGCTGTGGCCCTACAGAGCAGAATCAGCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR TCA 90 bp GGACCCAAGTGGCCAGCCACGTGGCTTTGGGACGCCTGCGTCCAGGCTGGGTGGCAACGTATTTGTCCTTaGTCCATGCCTCTTTGTCCT +
Preference number: 4 (lower is better)
Translates to: GPKWPATWLWDACVQAGWQRICP*SMPLCP
Trigger: AGGACAAAGAGGCATGGATCAAGGACAAATACGTTG...CCACCCAGCCTGGACGCAGGCGTCCCAAAGCCACGTGGCTGGCCACTTGGGTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR TCA 90 bp TCAAGCAAGGGAGTCAGAGGCCCTGACCCAGTGCCGACATTACTGTCCATGGATCGGGTACGAGCTGCCTaGTGTGCCAGCAGCCCAGGA +
Preference number: 4 (lower is better)
Translates to: SSKGVRGPDPVPTLLSMDRVRAA*CASSPG
Trigger: TCCTGGGCTGCTGGCACATCAGGCAGCTCGTACCCG...ATCCATGGACAGTAATGTCGGCACTGGGTCAGGGCCTCTGACTCCCTTGCTTGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR GCA 90 bp GCAACATTTCTGGGCCGGGTAGGCTGGGGTCAGGGTAGGGCTCCCGCAGCTGCCTACCACACCACTTGGTaGATCCACATCAAACTCCAC +
Preference number: 4 (lower is better)
Translates to: ATFLGRVGWGQGRAPAAAYHTTW*IHIKLH
Trigger: GTGGAGTTTGATGTGGATGCACCAAGTGGTGTGGTA...GGCAGCTGCGGGAGCCCTACCCTGACCCCAGCCTACCCGGCCCAGAAATGTTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR GCA 90 bp GGGCACAAGGACCCAAGTGGCCAGCCACGTGGCTTTGGGACGCCTGCGTCCAGGAGATCTGGTTCACGGTaGTGTTTCCAAGCTCACACA +
Preference number: 4 (lower is better)
Translates to: GHKDPSGQPRGFGTPASRRSGSR*CFQAHT
Trigger: TGTGTGAGCTTGGAAACAGCACCGTGAACCAGATCT...CCTGGACGCAGGCGTCCCAAAGCCACGTGGCTGGCCACTTGGGTCCTTGTGCCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR GCA 90 bp GGAGTCAGAGGCCCTGACCCAGTGCCGACATTACTGTCCATGGATGCTCCCAGGTCATCTCCTCAGCCATaGGGGCCAGGCGAAGCAATG +
Preference number: 4 (lower is better)
Translates to: GVRGPDPVPTLLSMDAPRSSPQP*GPGEAM
Trigger: CATTGCTTCGCCTGGCCCGCATGGCTGAGGAGATGA...CCTGGGAGCATCCATGGACAGTAATGTCGGCACTGGGTCAGGGCCTCTGACTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR CCA 90 bp GGACCCAAGTGGCCAGCCACGTGGCTTTGGGACGCCTGCGTCCAGGCTGGGTGGCATTACCACACCACTTaGTGCATCCACATCAAACTC +
Preference number: 4 (lower is better)
Translates to: GPKWPATWLWDACVQAGWHYHTT*CIHIKL
Trigger: GAGTTTGATGTGGATGCACCAAGTGGTGTGGTAATG...CCACCCAGCCTGGACGCAGGCGTCCCAAAGCCACGTGGCTGGCCACTTGGGTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR CCA 90 bp GGACATGCAACATTTCTGGGCCGGGTAGGCTGGGGTCAGGGTAGGGCTCCCGCAACGCCCAAGCTCCTGTaGATGCCTGAGCACTCAATA +
Preference number: 4 (lower is better)
Translates to: GHATFLGRVGWGQGRAPATPKLL*MPEHSI
Trigger: TATTGAGTGCTCAGGCATCCACAGGAGCTTGGGCGT...TGCGGGAGCCCTACCCTGACCCCAGCCTACCCGGCCCAGAAATGTTGCATGTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR CCA 90 bp AGGGACCACTGGACCTATATCAGAGGCCCAGCCCAAGGAGTGAAGCTCGGGGGCTACAGCCTGCACCAATaGGGTCTTGCCCTCATCTGC +
Preference number: 4 (lower is better)
Translates to: RDHWTYIRGPAQGVKLGGYSLHQ*GLALIC
Trigger: GCAGATGAGGGCAAGACCCCATTGGTGCAGGCTGTA...GCCCCCGAGCTTCACTCCTTGGGCTGGGCCTCTGATATAGGTCCAGTGGTCCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR CCA 90 bp AGGAGTGAGGACTCCAGGAAGACCAGGGTCCTGGGCTGTTGGGATGAGCCCACAAGGAGTGTCCGTTGCTaGATGGCAGCATGCTTGCGC +
Preference number: 4 (lower is better)
Translates to: RSEDSRKTRVLGCWDEPTRSVRC*MAACLR
Trigger: GCGCAAGCATGCTGCCATCCAGCAACGGACACTCCT...TGTGGGCTCATCCCAACAGCCCAGGACCCTGGTCTTCCTGGAGTCCTCACTCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105584.10
CDS-3UTR TCA 90 bp GGAGTCAGAGGCCCTGACCCAGTGCCGACATTACTGTCCATGGATGCTCCCAGGAGCGCGGCGAGTCCTTaGTGCATTCCTCGAACTCTA +
Preference number: 4 (lower is better)
Translates to: GVRGPDPVPTLLSMDAPRSAASP*CIPRTL
Trigger: TAGAGTTCGAGGAATGCATCAAGGACTCGCCGCGCT...CCTGGGAGCATCCATGGACAGTAATGTCGGCACTGGGTCAGGGCCTCTGACTCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR TCA 90 bp CTAGCCAAGGGCCCCATAGTATGCAGAGGGACCCAGCCTCTGTCCTGGGACTCCCTCCATAGTAGCAGCTaGGGACAAAGCAGCAACGGA +
Preference number: 4 (lower is better)
Translates to: LAKGPIVCRGTQPLSWDSLHSSS*GQSSNG
Trigger: TCCGTTGCTGCTTTGTCCTCAGCTGCTACTATGGAG...GGAGTCCCAGGACAGAGGCTGGGTCCCTCTGCATACTATGGGGCCCTTGGCTAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR TCA 90 bp TGCCGACATTACTGTCCATGGATGCTCCCAGGGCAGTGTTTGCATAGTGACCAGCGGGTACGAGCTGCCTaGTGTGCCAGCAGCCCAGGA +
Preference number: 4 (lower is better)
Translates to: CRHYCPWMLPGQCLHSDQRVRAA*CASSPG
Trigger: TCCTGGGCTGCTGGCACATCAGGCAGCTCGTACCCG...CTGGTCACTATGCAAACACTGCCCTGGGAGCATCCATGGACAGTAATGTCGGCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR GCA 90 bp GGACATGCAACATTTCTGGGCCGGGTAGGCTGGGGTCAGGGTAGGGCTCCCGCACTCTCGCTTTTCCACTaGAGAGTCGATCACAAGCTG +
Preference number: 4 (lower is better)
Translates to: GHATFLGRVGWGQGRAPALSLFH*RVDHKL
Trigger: CAGCTTGTGATCGACTCTGCAGTGGAAAAGCGAGAG...TGCGGGAGCCCTACCCTGACCCCAGCCTACCCGGCCCAGAAATGTTGCATGTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR GCA 90 bp AAGCTGATTCTGCTCTGTAGGGCCACAGCCATCAAGCAAGGGAGTCAGAGGCCCACACTCTGCACACGCTaGAGCACGCTCTCGCCCTTG +
Preference number: 4 (lower is better)
Translates to: KLILLCRATAIKQGSQRPTLCTR*STLSPL
Trigger: CAAGGGCGAGAGCGTGCTGCAGCGTGTGCAGAGTGT...GGGCCTCTGACTCCCTTGCTTGATGGCTGTGGCCCTACAGAGCAGAATCAGCTT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR GCA 90 bp AAGCTGATTCTGCTCTGTAGGGCCACAGCCATCAAGCAAGGGAGTCAGAGGCCCTTGCCAGCCACACTCTaGACACGCTGCAGCACGCTC +
Preference number: 4 (lower is better)
Translates to: KLILLCRATAIKQGSQRPLPATL*TRCSTL
Trigger: GAGCGTGCTGCAGCGTGTGCAGAGTGTGGCTGGCAA...GGGCCTCTGACTCCCTTGCTTGATGGCTGTGGCCCTACAGAGCAGAATCAGCTT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR GCA 90 bp CCAGATGCTGGGGTCACGAGCAAGGTACTCAGGGTGACTCCCTGGGTGGGCTGCCCAAGCTCCTGTGGATaGCTGAGCACTCAATACAGA +
Preference number: 4 (lower is better)
Translates to: PDAGVTSKVLRVTPWVGCPSSCG*LSTQYR
Trigger: TCTGTATTGAGTGCTCAGGCATCCACAGGAGCTTGG...GCAGCCCACCCAGGGAGTCACCCTGAGTACCTTGCTCGTGACCCCAGCATCTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR GCA 90 bp TCAGAGGCCCTGACCCAGTGCCGACATTACTGTCCATGGATGCTCCCAGGGCAGCAAGCTCCAGGCCTCTaGTTCTCCATCGACCTCACT +
Preference number: 4 (lower is better)
Translates to: SEALTQCRHYCPWMLPGQQAPGL*FSIDLT
Trigger: AGTGAGGTCGATGGAGAAGCAGAGGCCTGGAGCTTG...CTGCCCTGGGAGCATCCATGGACAGTAATGTCGGCACTGGGTCAGGGCCTCTGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR CCA 90 bp CCAGATGCTGGGGTCACGAGCAAGGTACTCAGGGTGACTCCCTGGGTGGGCTGCTCTTTGACAAAGTTGTaGAGCTGCTGCCGCACCGAT +
Preference number: 4 (lower is better)
Translates to: PDAGVTSKVLRVTPWVGCSLTKL*SCCRTD
Trigger: ATCGGTGCGGCAGCAGCTCCACAACTTTGTCAAAGA...GCAGCCCACCCAGGGAGTCACCCTGAGTACCTTGCTCGTGACCCCAGCATCTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR CCA 90 bp CTAGCCAAGGGCCCCATAGTATGCAGAGGGACCCAGCCTCTGTCCTGGGACTCCAGGCTATACCCCTGCTaGAAGAAGCTGTACTGGGCA +
Preference number: 4 (lower is better)
Translates to: LAKGPIVCRGTQPLSWDSRLYPC*KKLYWA
Trigger: TGCCCAGTACAGCTTCTTCCAGCAGGGGTATAGCCT...GGAGTCCCAGGACAGAGGCTGGGTCCCTCTGCATACTATGGGGCCCTTGGCTAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR CCA 90 bp AAGCTGATTCTGCTCTGTAGGGCCACAGCCATCAAGCAAGGGAGTCAGAGGCCCGGGTCCTGTTGCTCCTaGTCCAGGGCATGCTGGTCA +
Preference number: 4 (lower is better)
Translates to: KLILLCRATAIKQGSQRPGSCCS*SRACWS
Trigger: TGACCAGCATGCCCTGGACCAGGAGCAACAGGACCC...GGGCCTCTGACTCCCTTGCTTGATGGCTGTGGCCCTACAGAGCAGAATCAGCTT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR TCA 90 bp GGAGTCAGAGGCCCTGACCCAGTGCCGACATTACTGTCCATGGATGCTCCCAGGTGGCCTGGAGGACATTaGTCTGCAGCACATAGTCCA +
Preference number: 4 (lower is better)
Translates to: GVRGPDPVPTLLSMDAPRWPGGH*SAAHSP
Trigger: TGGACTATGTGCTGCAGATCAATGTCCTCCAGGCCA...CCTGGGAGCATCCATGGACAGTAATGTCGGCACTGGGTCAGGGCCTCTGACTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR TCA 90 bp TCAGAGGCCCTGACCCAGTGCCGACATTACTGTCCATGGATGCTCCCAGGGCAGCTCCATAGTAGCAGCTaGGGACAAAGCAGCAACGGA +
Preference number: 4 (lower is better)
Translates to: SEALTQCRHYCPWMLPGQLHSSS*GQSSNG
Trigger: TCCGTTGCTGCTTTGTCCTCAGCTGCTACTATGGAG...CTGCCCTGGGAGCATCCATGGACAGTAATGTCGGCACTGGGTCAGGGCCTCTGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR TCA 90 bp TCAAGCAAGGGAGTCAGAGGCCCTGACCCAGTGCCGACATTACTGTCCATGGATCCAGGTGGAGGCCAATaGACTCCTGGATGCACCTGC +
Preference number: 4 (lower is better)
Translates to: SSKGVRGPDPVPTLLSMDPGGGQ*TPGCTC
Trigger: GCAGGTGCATCCAGGAGTTCATTGGCCTCCACCTGG...ATCCATGGACAGTAATGTCGGCACTGGGTCAGGGCCTCTGACTCCCTTGCTTGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR GCA 90 bp TCAGAGGCCCTGACCCAGTGCCGACATTACTGTCCATGGATGCTCCCAGGGCAGCTGGTCCAACTCAGCTaGCAGCTTCTTCATGTAGGG +
Preference number: 4 (lower is better)
Translates to: SEALTQCRHYCPWMLPGQLVQLS*QLLHVG
Trigger: CCCTACATGAAGAAGCTGGCAGCTGAGTTGGACCAG...CTGCCCTGGGAGCATCCATGGACAGTAATGTCGGCACTGGGTCAGGGCCTCTGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR GCA 90 bp TCAGAGGCCCTGACCCAGTGCCGACATTACTGTCCATGGATGCTCCCAGGGCAGGGATGGCAGCATGCTTaGGCTCCATCTCTCGCTTTT +
Preference number: 4 (lower is better)
Translates to: SEALTQCRHYCPWMLPGQGWQHA*APSLAF
Trigger: AAAAGCGAGAGATGGAGCGCAAGCATGCTGCCATCC...CTGCCCTGGGAGCATCCATGGACAGTAATGTCGGCACTGGGTCAGGGCCTCTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR GCA 90 bp AAGCTGATTCTGCTCTGTAGGGCCACAGCCATCAAGCAAGGGAGTCAGAGGCCCTGCTGGATGGCAGCATaGTTGCGCTCCATCTCTCGC +
Preference number: 4 (lower is better)
Translates to: KLILLCRATAIKQGSQRPCWMAA*LRSISR
Trigger: GCGAGAGATGGAGCGCAAGCATGCTGCCATCCAGCA...GGGCCTCTGACTCCCTTGCTTGATGGCTGTGGCCCTACAGAGCAGAATCAGCTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR GCA 90 bp TCAAGCAAGGGAGTCAGAGGCCCTGACCCAGTGCCGACATTACTGTCCATGGATTTGCCAGCCACACTCTaGACACGCTGCAGCACGCTC +
Preference number: 4 (lower is better)
Translates to: SSKGVRGPDPVPTLLSMDLPATL*TRCSTL
Trigger: GAGCGTGCTGCAGCGTGTGCAGAGTGTGGCTGGCAA...ATCCATGGACAGTAATGTCGGCACTGGGTCAGGGCCTCTGACTCCCTTGCTTGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR GCA 90 bp GGACATGCAACATTTCTGGGCCGGGTAGGCTGGGGTCAGGGTAGGGCTCCCGCAAGATCTGGTTCACGGTaGTGTTTCCAAGCTCACACA +
Preference number: 4 (lower is better)
Translates to: GHATFLGRVGWGQGRAPARSGSR*CFQAHT
Trigger: TGTGTGAGCTTGGAAACAGCACCGTGAACCAGATCT...TGCGGGAGCCCTACCCTGACCCCAGCCTACCCGGCCCAGAAATGTTGCATGTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR GCA 90 bp TCAAGCAAGGGAGTCAGAGGCCCTGACCCAGTGCCGACATTACTGTCCATGGATCAGCTCACGCACATCTaGCAAGCTCCAGGCCTCTGC +
Preference number: 4 (lower is better)
Translates to: SSKGVRGPDPVPTLLSMDQLTHI*QAPGLC
Trigger: GCAGAGGCCTGGAGCTTGGCAGATGTGCGTGAGCTG...ATCCATGGACAGTAATGTCGGCACTGGGTCAGGGCCTCTGACTCCCTTGCTTGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR GCA 90 bp GAGAAGCTGATTCTGCTCTGTAGGGCCACAGCCATCAAGCAAGGGAGTCAGAGGACGAGCTGCCTGATGTaGCAGCAGCCCAGGATGCAG +
Preference number: 4 (lower is better)
Translates to: EKLILLCRATAIKQGSQRTSCLM*QQPRMQ
Trigger: CTGCATCCTGGGCTGCTGGCACATCAGGCAGCTCGT...CCTCTGACTCCCTTGCTTGATGGCTGTGGCCCTACAGAGCAGAATCAGCTTCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR CCA 90 bp CTAGCCAAGGGCCCCATAGTATGCAGAGGGACCCAGCCTCTGTCCTGGGACTCCTCTTTGACAAAGTTGTaGAGCTGCTGCCGCACCGAT +
Preference number: 4 (lower is better)
Translates to: LAKGPIVCRGTQPLSWDSSLTKL*SCCRTD
Trigger: ATCGGTGCGGCAGCAGCTCCACAACTTTGTCAAAGA...GGAGTCCCAGGACAGAGGCTGGGTCCCTCTGCATACTATGGGGCCCTTGGCTAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR CCA 90 bp TCAGAGGCCCTGACCCAGTGCCGACATTACTGTCCATGGATGCTCCCAGGGCAGAGGCTATACCCCTGCTaGAAGAAGCTGTACTGGGCA +
Preference number: 4 (lower is better)
Translates to: SEALTQCRHYCPWMLPGQRLYPC*KKLYWA
Trigger: TGCCCAGTACAGCTTCTTCCAGCAGGGGTATAGCCT...CTGCCCTGGGAGCATCCATGGACAGTAATGTCGGCACTGGGTCAGGGCCTCTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR CCA 90 bp AAGCTGATTCTGCTCTGTAGGGCCACAGCCATCAAGCAAGGGAGTCAGAGGCCCCGTACCTTAGAGCAGTaGACGCCCAAGCTCCTGTGG +
Preference number: 4 (lower is better)
Translates to: KLILLCRATAIKQGSQRPRTLEQ*TPKLLW
Trigger: CCACAGGAGCTTGGGCGTCCACTGCTCTAAGGTACG...GGGCCTCTGACTCCCTTGCTTGATGGCTGTGGCCCTACAGAGCAGAATCAGCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR CCA 90 bp AGGAGTGAGGACTCCAGGAAGACCAGGGTCCTGGGCTGTTGGGATGAGCCCACACTGCTTGAACTGCGATaGTCAGTGGGTCCTGTTGCT +
Preference number: 4 (lower is better)
Translates to: RSEDSRKTRVLGCWDEPTLLELR*SVGPVA
Trigger: AGCAACAGGACCCACTGACCATCGCAGTTCAAGCAG...TGTGGGCTCATCCCAACAGCCCAGGACCCTGGTCTTCCTGGAGTCCTCACTCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR TCA 90 bp ATTGGGCACAGGGTGGAGAGTACCAGCTGCTTTAGGCATGGGTGCTGGCCCAGGTCCGCACATCCTCTTTaGCAAAGTTGTGGAGCTGCT +
Preference number: 4 (lower is better)
Translates to: IGHRVESTSCFRHGCWPRSAHPL*QSCGAA
Trigger: AGCAGCTCCACAACTTTGTCAAAGAGGATGTGCGGA...CCTGGGCCAGCACCCATGCCTAAAGCAGCTGGTACTCTCCACCCTGTGCCCAAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR TCA 90 bp AAGCTGATTCTGCTCTGTAGGGCCACAGCCATCAAGCAAGGGAGTCAGAGGCCCACCAGCTGGCTGTTTTaGATGGAGAACCACCGTCGG +
Preference number: 4 (lower is better)
Translates to: KLILLCRATAIKQGSQRPTSWLF*MENHRR
Trigger: CCGACGGTGGTTCTCCATTCAAAACAGCCAGCTGGT...GGGCCTCTGACTCCCTTGCTTGATGGCTGTGGCCCTACAGAGCAGAATCAGCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR TCA 90 bp TGCCGACATTACTGTCCATGGATGCTCCCAGGGCAGTGTTTGCATAGTGACCAGCACCCTCTTCCTCGGTaGCACTGTCCACCACTGAGC +
Preference number: 4 (lower is better)
Translates to: CRHYCPWMLPGQCLHSDQHPLPR*HCPPLS
Trigger: GCTCAGTGGTGGACAGTGTCACCGAGGAAGAGGGTG...CTGGTCACTATGCAAACACTGCCCTGGGAGCATCCATGGACAGTAATGTCGGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR GCA 90 bp TCAAGCAAGGGAGTCAGAGGCCCTGACCCAGTGCCGACATTACTGTCCATGGATTGCTGGATGGCAGCATaGTTGCGCTCCATCTCTCGC +
Preference number: 4 (lower is better)
Translates to: SSKGVRGPDPVPTLLSMDCWMAA*LRSISR
Trigger: GCGAGAGATGGAGCGCAAGCATGCTGCCATCCAGCA...ATCCATGGACAGTAATGTCGGCACTGGGTCAGGGCCTCTGACTCCCTTGCTTGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR GCA 90 bp AGGGACCACTGGACCTATATCAGAGGCCCAGCCCAAGGAGTGAAGCTCGGGGGCTACCACACCACTTGGTaGATCCACATCAAACTCCAC +
Preference number: 4 (lower is better)
Translates to: RDHWTYIRGPAQGVKLGGYHTTW*IHIKLH
Trigger: GTGGAGTTTGATGTGGATGCACCAAGTGGTGTGGTA...GCCCCCGAGCTTCACTCCTTGGGCTGGGCCTCTGATATAGGTCCAGTGGTCCCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR GCA 90 bp AAGCTGATTCTGCTCTGTAGGGCCACAGCCATCAAGCAAGGGAGTCAGAGGCCCCAAGCTCCAGGCCTCTaGTTCTCCATCGACCTCACT +
Preference number: 4 (lower is better)
Translates to: KLILLCRATAIKQGSQRPQAPGL*FSIDLT
Trigger: AGTGAGGTCGATGGAGAAGCAGAGGCCTGGAGCTTG...GGGCCTCTGACTCCCTTGCTTGATGGCTGTGGCCCTACAGAGCAGAATCAGCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR GCA 90 bp GGACATGCAACATTTCTGGGCCGGGTAGGCTGGGGTCAGGGTAGGGCTCCCGCAACATCAGCTCCGTTTTaGAGAAGGAACTCACAGACA +
Preference number: 4 (lower is better)
Translates to: GHATFLGRVGWGQGRAPATSAPF*RRNSQT
Trigger: TGTCTGTGAGTTCCTTCTGCAAAACGGAGCTGATGT...TGCGGGAGCCCTACCCTGACCCCAGCCTACCCGGCCCAGAAATGTTGCATGTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR GCA 90 bp TCAAGCAAGGGAGTCAGAGGCCCTGACCCAGTGCCGACATTACTGTCCATGGATTCATCTCCTCAGCCATaGGGGCCAGGCGAAGCAATG +
Preference number: 4 (lower is better)
Translates to: SSKGVRGPDPVPTLLSMDSSPQP*GPGEAM
Trigger: CATTGCTTCGCCTGGCCCGCATGGCTGAGGAGATGA...ATCCATGGACAGTAATGTCGGCACTGGGTCAGGGCCTCTGACTCCCTTGCTTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR CCA 90 bp TCAAGCAAGGGAGTCAGAGGCCCTGACCCAGTGCCGACATTACTGTCCATGGATTGCCGCACCGATCTCTaGGCCTGGTCAAACAGGATC +
Preference number: 4 (lower is better)
Translates to: SSKGVRGPDPVPTLLSMDCRTDL*AWSNRI
Trigger: GATCCTGTTTGACCAGGCCCAGAGATCGGTGCGGCA...ATCCATGGACAGTAATGTCGGCACTGGGTCAGGGCCTCTGACTCCCTTGCTTGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR CCA 90 bp GGACCCAAGTGGCCAGCCACGTGGCTTTGGGACGCCTGCGTCCAGGCTGGGTGGCATCAAACTCCACTTTaGGTTCATCATAGGAAAAGT +
Preference number: 4 (lower is better)
Translates to: GPKWPATWLWDACVQAGWHQTPL*VHHRKS
Trigger: ACTTTTCCTATGATGAACCCAAAGTGGAGTTTGATG...CCACCCAGCCTGGACGCAGGCGTCCCAAAGCCACGTGGCTGGCCACTTGGGTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR CCA 90 bp AGGAGTGAGGACTCCAGGAAGACCAGGGTCCTGGGCTGTTGGGATGAGCCCACAACTGTAGCAGCTATCTaGACTTTCCCGGTAGGCAGA +
Preference number: 4 (lower is better)
Translates to: RSEDSRKTRVLGCWDEPTTVAAI*TFPVGR
Trigger: TCTGCCTACCGGGAAAGTCCAGATAGCTGCTACAGT...TGTGGGCTCATCCCAACAGCCCAGGACCCTGGTCTTCCTGGAGTCCTCACTCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR CCA 90 bp TCAGAGGCCCTGACCCAGTGCCGACATTACTGTCCATGGATGCTCCCAGGGCAGCCCGAGAGTCCGTGGTaGAATCAATGCTACTTGTTG +
Preference number: 4 (lower is better)
Translates to: SEALTQCRHYCPWMLPGQPESPW*NQCYLL
Trigger: CAACAAGTAGCATTGATTCCACCACGGACTCTCGGG...CTGCCCTGGGAGCATCCATGGACAGTAATGTCGGCACTGGGTCAGGGCCTCTGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR CCA 90 bp AACCAGACAGTGCCTCTGGAGGAGGCAGGGGTGGACTTGAGCCCTCGGGCACAACCAAGGCTGTCTCTTTaGTTCACATCAGCTCCGTTT +
Preference number: 4 (lower is better)
Translates to: NQTVPLEEAGVDLSPRAQPRLSL*FTSAPF
Trigger: AAACGGAGCTGATGTGAACCAAAGAGACAGCCTTGG...TTGTGCCCGAGGGCTCAAGTCCACCCCTGCCTCCTCCAGAGGCACTGTCTGGTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR CCA 90 bp AAGCTGATTCTGCTCTGTAGGGCCACAGCCATCAAGCAAGGGAGTCAGAGGCCCAACTGCGATGGTCAGTaGGTCCTGTTGCTCCTGGTC +
Preference number: 4 (lower is better)
Translates to: KLILLCRATAIKQGSQRPNCDGQ*VLLLLV
Trigger: GACCAGGAGCAACAGGACCCACTGACCATCGCAGTT...GGGCCTCTGACTCCCTTGCTTGATGGCTGTGGCCCTACAGAGCAGAATCAGCTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR TCA 90 bp ATTGGGCACAGGGTGGAGAGTACCAGCTGCTTTAGGCATGGGTGCTGGCCCAGGCATTGCTGGCTCTCTTaGAGAGATAGCCCTCCATTA +
Preference number: 4 (lower is better)
Translates to: IGHRVESTSCFRHGCWPRHCWLS*RDSPPL
Trigger: TAATGGAGGGCTATCTCTTCAAGAGAGCCAGCAATG...CCTGGGCCAGCACCCATGCCTAAAGCAGCTGGTACTCTCCACCCTGTGCCCAAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR TCA 90 bp GAGAAGCTGATTCTGCTCTGTAGGGCCACAGCCATCAAGCAAGGGAGTCAGAGGGCTCCTGTGGATGCCTaGGCACTCAATACAGAGCAG +
Preference number: 4 (lower is better)
Translates to: EKLILLCRATAIKQGSQRAPVDA*ALNTEQ
Trigger: CTGCTCTGTATTGAGTGCTCAGGCATCCACAGGAGC...CCTCTGACTCCCTTGCTTGATGGCTGTGGCCCTACAGAGCAGAATCAGCTTCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR CCA 90 bp GGAGTCAGAGGCCCTGACCCAGTGCCGACATTACTGTCCATGGATGCTCCCAGGAACTTCTTCTTGGCCTaGAGGACATTGATCTGCAGC +
Preference number: 4 (lower is better)
Translates to: GVRGPDPVPTLLSMDAPRNFFLA*RTLICS
Trigger: GCTGCAGATCAATGTCCTCCAGGCCAAGAAGAAGTT...CCTGGGAGCATCCATGGACAGTAATGTCGGCACTGGGTCAGGGCCTCTGACTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR CCA 90 bp AGGGTAGGTGGTGGGCAGAGCTCAAGCAGGACGGAGAAGCTGATTCTGCTCTGTCTGCTTGAACTGCGATaGTCAGTGGGTCCTGTTGCT +
Preference number: 4 (lower is better)
Translates to: RVGGGQSSSRTEKLILLCLLELR*SVGPVA
Trigger: AGCAACAGGACCCACTGACCATCGCAGTTCAAGCAG...ACAGAGCAGAATCAGCTTCTCCGTCCTGCTTGAGCTCTGCCCACCACCTACCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR CCA 90 bp TGCCGACATTACTGTCCATGGATGCTCCCAGGGCAGTGTTTGCATAGTGACCAGGTGTCCGTTGCTGGATaGCAGCATGCTTGCGCTCCA +
Preference number: 4 (lower is better)
Translates to: CRHYCPWMLPGQCLHSDQVSVAG*QHACAP
Trigger: TGGAGCGCAAGCATGCTGCCATCCAGCAACGGACAC...CTGGTCACTATGCAAACACTGCCCTGGGAGCATCCATGGACAGTAATGTCGGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105584.10
3UTR CAA 72 bp CGACATTACTGTCCATGGATGCTCCCAGGGCAGTGTTaGCATAGTGACCAGCTGAGTGCCCTTGACCTAGCC +
Preference number: 4 (lower is better)
Translates to: RHYCPWMLPGQC*HSDQLSALDLA
Trigger: GGCTAGGTCAAGGGCACTCAGCTGGTCACTATGCAAACACTGCCCTGGGAGCATCCATGGACAGTAATGTCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR TCA 90 bp TGCCGACATTACTGTCCATGGATGCTCCCAGGGCAGTGTTTGCATAGTGACCAGGCTCCTGTGGATGCCTaGGCACTCAATACAGAGCAG +
Preference number: 4 (lower is better)
Translates to: CRHYCPWMLPGQCLHSDQAPVDA*ALNTEQ
Trigger: CTGCTCTGTATTGAGTGCTCAGGCATCCACAGGAGC...CTGGTCACTATGCAAACACTGCCCTGGGAGCATCCATGGACAGTAATGTCGGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR GCA 90 bp GAGAAGCTGATTCTGCTCTGTAGGGCCACAGCCATCAAGCAAGGGAGTCAGAGGAGGAGGCTATACCCCTaGTGGAAGAAGCTGTACTGG +
Preference number: 4 (lower is better)
Translates to: EKLILLCRATAIKQGSQRRRLYP*WKKLYW
Trigger: CCAGTACAGCTTCTTCCAGCAGGGGTATAGCCTCCT...CCTCTGACTCCCTTGCTTGATGGCTGTGGCCCTACAGAGCAGAATCAGCTTCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR GCA 90 bp AAGCTGATTCTGCTCTGTAGGGCCACAGCCATCAAGCAAGGGAGTCAGAGGCCCCCAAGCTCCTGTGGATaGCTGAGCACTCAATACAGA +
Preference number: 4 (lower is better)
Translates to: KLILLCRATAIKQGSQRPPSSCG*LSTQYR
Trigger: TCTGTATTGAGTGCTCAGGCATCCACAGGAGCTTGG...GGGCCTCTGACTCCCTTGCTTGATGGCTGTGGCCCTACAGAGCAGAATCAGCTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR GCA 90 bp TGCCGACATTACTGTCCATGGATGCTCCCAGGGCAGTGTTTGCATAGTGACCAGTGCAGGAGTGTCCGTTaGTGGATGGCAGCATGCTTG +
Preference number: 4 (lower is better)
Translates to: CRHYCPWMLPGQCLHSDQCRSVR*WMAACL
Trigger: CAAGCATGCTGCCATCCAGCAACGGACACTCCTGCA...CTGGTCACTATGCAAACACTGCCCTGGGAGCATCCATGGACAGTAATGTCGGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105584.10
CDS-3UTR CCA 90 bp AGGAGTGAGGACTCCAGGAAGACCAGGGTCCTGGGCTGTTGGGATGAGCCCACACATTACCACACCACTTaGTGCATCCACATCAAACTC +
Preference number: 4 (lower is better)
Translates to: RSEDSRKTRVLGCWDEPTHYHTT*CIHIKL
Trigger: GAGTTTGATGTGGATGCACCAAGTGGTGTGGTAATG...TGTGGGCTCATCCCAACAGCCCAGGACCCTGGTCTTCCTGGAGTCCTCACTCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR CCA 90 bp AAGCTGATTCTGCTCTGTAGGGCCACAGCCATCAAGCAAGGGAGTCAGAGGCCCACTGTAGCAGCTATCTaGACTTTCCCGGTAGGCAGA +
Preference number: 4 (lower is better)
Translates to: KLILLCRATAIKQGSQRPTVAAI*TFPVGR
Trigger: TCTGCCTACCGGGAAAGTCCAGATAGCTGCTACAGT...GGGCCTCTGACTCCCTTGCTTGATGGCTGTGGCCCTACAGAGCAGAATCAGCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR CCA 90 bp TGCCGACATTACTGTCCATGGATGCTCCCAGGGCAGTGTTTGCATAGTGACCAGCCTCTTTGTCCTGCCTaGAACTGCTGGCTGTGGGTT +
Preference number: 4 (lower is better)
Translates to: CRHYCPWMLPGQCLHSDQPLCPA*NCWLWV
Trigger: AACCCACAGCCAGCAGTTCCAGGCAGGACAAAGAGG...CTGGTCACTATGCAAACACTGCCCTGGGAGCATCCATGGACAGTAATGTCGGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR GCA 90 bp TGCCGACATTACTGTCCATGGATGCTCCCAGGGCAGTGTTTGCATAGTGACCAGAGCCCCAGCAGCCCCTaGATCAAAGTAAGAGAAGAG +
Preference number: 4 (lower is better)
Translates to: CRHYCPWMLPGQCLHSDQSPSSP*IKVREE
Trigger: CTCTTCTCTTACTTTGATGCAGGGGCTGCTGGGGCT...CTGGTCACTATGCAAACACTGCCCTGGGAGCATCCATGGACAGTAATGTCGGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR CCA 90 bp GAGAAGCTGATTCTGCTCTGTAGGGCCACAGCCATCAAGCAAGGGAGTCAGAGGTGGAAGAAGCTGTACTaGGCATGCATGAAGGACAGC +
Preference number: 4 (lower is better)
Translates to: EKLILLCRATAIKQGSQRWKKLY*ACMKDS
Trigger: GCTGTCCTTCATGCATGCCCAGTACAGCTTCTTCCA...CCTCTGACTCCCTTGCTTGATGGCTGTGGCCCTACAGAGCAGAATCAGCTTCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR CCA 90 bp GGACATGCAACATTTCTGGGCCGGGTAGGCTGGGGTCAGGGTAGGGCTCCCGCACATCAAACTCCACTTTaGGTTCATCATAGGAAAAGT +
Preference number: 4 (lower is better)
Translates to: GHATFLGRVGWGQGRAPAHQTPL*VHHRKS
Trigger: ACTTTTCCTATGATGAACCCAAAGTGGAGTTTGATG...TGCGGGAGCCCTACCCTGACCCCAGCCTACCCGGCCCAGAAATGTTGCATGTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR CCA 90 bp TGCCGACATTACTGTCCATGGATGCTCCCAGGGCAGTGTTTGCATAGTGACCAGACGCCCAAGCTCCTGTaGATGCCTGAGCACTCAATA +
Preference number: 4 (lower is better)
Translates to: CRHYCPWMLPGQCLHSDQTPKLL*MPEHSI
Trigger: TATTGAGTGCTCAGGCATCCACAGGAGCTTGGGCGT...CTGGTCACTATGCAAACACTGCCCTGGGAGCATCCATGGACAGTAATGTCGGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR TCA 90 bp TGCCGACATTACTGTCCATGGATGCTCCCAGGGCAGTGTTTGCATAGTGACCAGGGATCGTGTGATAGTTaGCCATCTCCTGTAGGCTGT +
Preference number: 4 (lower is better)
Translates to: CRHYCPWMLPGQCLHSDQGSCDS*PSPVGC
Trigger: ACAGCCTACAGGAGATGGTCAACTATCACACGATCC...CTGGTCACTATGCAAACACTGCCCTGGGAGCATCCATGGACAGTAATGTCGGCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR GCA 90 bp GGAGTCAGAGGCCCTGACCCAGTGCCGACATTACTGTCCATGGATGCTCCCAGGCGCACTTTGTCAAACTaGTTCTTTGTCTCTTTGAAC +
Preference number: 4 (lower is better)
Translates to: GVRGPDPVPTLLSMDAPRRTLSN*FFVSLN
Trigger: GTTCAAAGAGACAAAGAAGCAGTTTGACAAAGTGCG...CCTGGGAGCATCCATGGACAGTAATGTCGGCACTGGGTCAGGGCCTCTGACTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR CCA 90 bp TCAAGCAAGGGAGTCAGAGGCCCTGACCCAGTGCCGACATTACTGTCCATGGATAACTTCTTCTTGGCCTaGAGGACATTGATCTGCAGC +
Preference number: 4 (lower is better)
Translates to: SSKGVRGPDPVPTLLSMDNFFLA*RTLICS
Trigger: GCTGCAGATCAATGTCCTCCAGGCCAAGAAGAAGTT...ATCCATGGACAGTAATGTCGGCACTGGGTCAGGGCCTCTGACTCCCTTGCTTGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR CCA 90 bp TCAAGCAAGGGAGTCAGAGGCCCTGACCCAGTGCCGACATTACTGTCCATGGATCCAAGGCTGTCTCTTTaGTTCACATCAGCTCCGTTT +
Preference number: 4 (lower is better)
Translates to: SSKGVRGPDPVPTLLSMDPRLSL*FTSAPF
Trigger: AAACGGAGCTGATGTGAACCAAAGAGACAGCCTTGG...ATCCATGGACAGTAATGTCGGCACTGGGTCAGGGCCTCTGACTCCCTTGCTTGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR TCA 90 bp TCAAGCAAGGGAGTCAGAGGCCCTGACCCAGTGCCGACATTACTGTCCATGGATCAACGTATTTGTCCTTaGTCCATGCCTCTTTGTCCT +
Preference number: 4 (lower is better)
Translates to: SSKGVRGPDPVPTLLSMDQRICP*SMPLCP
Trigger: AGGACAAAGAGGCATGGATCAAGGACAAATACGTTG...ATCCATGGACAGTAATGTCGGCACTGGGTCAGGGCCTCTGACTCCCTTGCTTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR GCA 90 bp TCAAGCAAGGGAGTCAGAGGCCCTGACCCAGTGCCGACATTACTGTCCATGGATACATCAGCTCCGTTTTaGAGAAGGAACTCACAGACA +
Preference number: 4 (lower is better)
Translates to: SSKGVRGPDPVPTLLSMDTSAPF*RRNSQT
Trigger: TGTCTGTGAGTTCCTTCTGCAAAACGGAGCTGATGT...ATCCATGGACAGTAATGTCGGCACTGGGTCAGGGCCTCTGACTCCCTTGCTTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR GCA 90 bp AGGGTAGGTGGTGGGCAGAGCTCAAGCAGGACGGAGAAGCTGATTCTGCTCTGTCGCACTTTGTCAAACTaGTTCTTTGTCTCTTTGAAC +
Preference number: 4 (lower is better)
Translates to: RVGGGQSSSRTEKLILLCRTLSN*FFVSLN
Trigger: GTTCAAAGAGACAAAGAAGCAGTTTGACAAAGTGCG...ACAGAGCAGAATCAGCTTCTCCGTCCTGCTTGAGCTCTGCCCACCACCTACCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR CAA 90 bp CCAGATGCTGGGGTCACGAGCAAGGTACTCAGGGTGACTCCCTGGGTGGGCTGCGGCTCAAGCCGGACCTaGCGGCGGGTAGTGGGGGCG +
Preference number: 5 (lower is better)
Translates to: PDAGVTSKVLRVTPWVGCGSSRT*RRVVGA
Trigger: CGCCCCCACTACCCGCCGCAAGGTCCGGCTTGAGCC...GCAGCCCACCCAGGGAGTCACCCTGAGTACCTTGCTCGTGACCCCAGCATCTGG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR CAA 90 bp AACCAGACAGTGCCTCTGGAGGAGGCAGGGGTGGACTTGAGCCCTCGGGCACAAGGCTCAAGCCGGACCTaGCGGCGGGTAGTGGGGGCG +
Preference number: 5 (lower is better)
Translates to: NQTVPLEEAGVDLSPRAQGSSRT*RRVVGA
Trigger: CGCCCCCACTACCCGCCGCAAGGTCCGGCTTGAGCC...TTGTGCCCGAGGGCTCAAGTCCACCCCTGCCTCCTCCAGAGGCACTGTCTGGTT
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR CAA 90 bp GGGCACAAGGACCCAAGTGGCCAGCCACGTGGCTTTGGGACGCCTGCGTCCAGGAGCAGCACACCCAAGTaGATGCTGGCCCAGCGGGGA +
Preference number: 5 (lower is better)
Translates to: GHKDPSGQPRGFGTPASRSSTPK*MLAQRG
Trigger: TCCCCGCTGGGCCAGCATCAACTTGGGTGTGCTGCT...CCTGGACGCAGGCGTCCCAAAGCCACGTGGCTGGCCACTTGGGTCCTTGTGCCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR CAA 90 bp GGGCACAAGGACCCAAGTGGCCAGCCACGTGGCTTTGGGACGCCTGCGTCCAGGGGTCAGTGGGTCCTGTaGCTCCTGGTCCAGGGCATG +
Preference number: 5 (lower is better)
Translates to: GHKDPSGQPRGFGTPASRGQWVL*LLVQGM
Trigger: CATGCCCTGGACCAGGAGCAACAGGACCCACTGACC...CCTGGACGCAGGCGTCCCAAAGCCACGTGGCTGGCCACTTGGGTCCTTGTGCCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS TCA 90 bp GCCAGCGCTGCAGCCAGTGCTGGGAGGTCACGGGTACGAGCTGCCTaGTGTGCCAGCAGCCCAGGATGCAGCTCACGCACATCTGCCAAG +
Preference number: 5 (lower is better)
Translates to: ASAAASAGRSRVRAA*CASSPGCSSRTSAK
Trigger: CTTGGCAGATGTGCGTGAGCTGCATCCTGGGCTGCTGGCACATCAGGCAGCTCGTACCCGTGACCTCCCAGCACTGGCTGCAGCGCTGGC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS GCA 90 bp CCACAGTCGCCACACTGGCTGTTGCCAGCCACACTCTGCACACGCTaGAGCACGCTCTCGCCCTTGACTCCACGCTCCCGAGAGTCCGTG +
Preference number: 5 (lower is better)
Translates to: PQSPHWLLPATLCTR*STLSPLTPRSRESV
Trigger: CACGGACTCTCGGGAGCGTGGAGTCAAGGGCGAGAGCGTGCTGCAGCGTGTGCAGAGTGTGGCTGGCAACAGCCAGTGTGGCGACTGTGG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR CAA 90 bp GGAGTCAGAGGCCCTGACCCAGTGCCGACATTACTGTCCATGGATGCTCCCAGGGTGCCCTCCAGCGTCTaGGGGGTTCCCGGGCTGGTG +
Preference number: 5 (lower is better)
Translates to: GVRGPDPVPTLLSMDAPRVPSSV*GVPGLV
Trigger: CACCAGCCCGGGAACCCCCAAGACGCTGGAGGGCAC...CCTGGGAGCATCCATGGACAGTAATGTCGGCACTGGGTCAGGGCCTCTGACTCC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS GCA 90 bp CGCTGCAGCCAGTGCTGGGAGGTCACGGGTACGAGCTGCCTGATGTaGCAGCAGCCCAGGATGCAGCTCACGCACATCTGCCAAGCTCCA +
Preference number: 5 (lower is better)
Translates to: RCSQCWEVTGTSCLM*QQPRMQLTHICQAP
Trigger: TGGAGCTTGGCAGATGTGCGTGAGCTGCATCCTGGGCTGCTGGCACATCAGGCAGCTCGTACCCGTGACCTCCCAGCACTGGCTGCAGCG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR CAA 90 bp AGGGACCACTGGACCTATATCAGAGGCCCAGCCCAAGGAGTGAAGCTCGGGGGCCATGGGGCCGGTGCCTaGGGGCTTGGGCATTCCTCA +
Preference number: 5 (lower is better)
Translates to: RDHWTYIRGPAQGVKLGGHGAGA*GLGHSS
Trigger: TGAGGAATGCCCAAGCCCCAAGGCACCGGCCCCATG...GCCCCCGAGCTTCACTCCTTGGGCTGGGCCTCTGATATAGGTCCAGTGGTCCCT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR CAA 90 bp GGGCACAAGGACCCAAGTGGCCAGCCACGTGGCTTTGGGACGCCTGCGTCCAGGTGGATGGCAGCATGCTaGCGCTCCATCTCTCGCTTT +
Preference number: 5 (lower is better)
Translates to: GHKDPSGQPRGFGTPASRWMAAC*RSISRF
Trigger: AAAGCGAGAGATGGAGCGCAAGCATGCTGCCATCCA...CCTGGACGCAGGCGTCCCAAAGCCACGTGGCTGGCCACTTGGGTCCTTGTGCCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR CAA 90 bp TCAGAGGCCCTGACCCAGTGCCGACATTACTGTCCATGGATGCTCCCAGGGCAGAGCACGCTCTCGCCCTaGACTCCACGCTCCCGAGAG +
Preference number: 5 (lower is better)
Translates to: SEALTQCRHYCPWMLPGQSTLSP*TPRSRE
Trigger: CTCTCGGGAGCGTGGAGTCAAGGGCGAGAGCGTGCT...CTGCCCTGGGAGCATCCATGGACAGTAATGTCGGCACTGGGTCAGGGCCTCTGA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR CAA 90 bp AGGGACCACTGGACCTATATCAGAGGCCCAGCCCAAGGAGTGAAGCTCGGGGGCAGCAGCACACCCAAGTaGATGCTGGCCCAGCGGGGA +
Preference number: 5 (lower is better)
Translates to: RDHWTYIRGPAQGVKLGGSSTPK*MLAQRG
Trigger: TCCCCGCTGGGCCAGCATCAACTTGGGTGTGCTGCT...GCCCCCGAGCTTCACTCCTTGGGCTGGGCCTCTGATATAGGTCCAGTGGTCCCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR CAA 90 bp AGGGTAGGTGGTGGGCAGAGCTCAAGCAGGACGGAGAAGCTGATTCTGCTCTGTGTGCCCTCCAGCGTCTaGGGGGTTCCCGGGCTGGTG +
Preference number: 5 (lower is better)
Translates to: RVGGGQSSSRTEKLILLCVPSSV*GVPGLV
Trigger: CACCAGCCCGGGAACCCCCAAGACGCTGGAGGGCAC...ACAGAGCAGAATCAGCTTCTCCGTCCTGCTTGAGCTCTGCCCACCACCTACCCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS GCA 90 bp AGCTGCCTGATGTGCCAGCAGCCCAGGATGCAGCTCACGCACATCTaGCAAGCTCCAGGCCTCTGCTTCTCCATCGACCTCACTGCTGGA +
Preference number: 5 (lower is better)
Translates to: SCLMCQQPRMQLTHI*QAPGLCFSIDLTAG
Trigger: TCCAGCAGTGAGGTCGATGGAGAAGCAGAGGCCTGGAGCTTGGCAGATGTGCGTGAGCTGCATCCTGGGCTGCTGGCACATCAGGCAGCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS CCA 90 bp GCACCTGTGGCCTCCTCTACTTCATGGGGCCGGTGCCTTGGGGCTTaGGCATTCCTCACCAAGGACAACTCCATGTCCTCCCGCACTTTG +
Preference number: 5 (lower is better)
Translates to: APVASSTSWGRCLGA*AFLTKDNSMSSRTL
Trigger: CAAAGTGCGGGAGGACATGGAGTTGTCCTTGGTGAGGAATGCCCAAGCCCCAAGGCACCGGCCCCATGAAGTAGAGGAGGCCACAGGTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR CAA 90 bp GGACATGCAACATTTCTGGGCCGGGTAGGCTGGGGTCAGGGTAGGGCTCCCGCAGACCAGCTGGCTGTTTaGAATGGAGAACCACCGTCG +
Preference number: 5 (lower is better)
Translates to: GHATFLGRVGWGQGRAPADQLAV*NGEPPS
Trigger: CGACGGTGGTTCTCCATTCAAAACAGCCAGCTGGTC...TGCGGGAGCCCTACCCTGACCCCAGCCTACCCGGCCCAGAAATGTTGCATGTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR CAA 90 bp TCAGAGGCCCTGACCCAGTGCCGACATTACTGTCCATGGATGCTCCCAGGGCAGTCGCCACACTGGCTGTaGCCAGCCACACTCTGCACA +
Preference number: 5 (lower is better)
Translates to: SEALTQCRHYCPWMLPGQSPHWL*PATLCT
Trigger: TGTGCAGAGTGTGGCTGGCAACAGCCAGTGTGGCGA...CTGCCCTGGGAGCATCCATGGACAGTAATGTCGGCACTGGGTCAGGGCCTCTGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS TCA 90 bp TGTTGCCAGCCACACTCTGCACACGCTGCAGCACGCTCTCGCCCTTaGCTCCACGCTCCCGAGAGTCCGTGGTGGAATCAATGCTACTTG +
Preference number: 5 (lower is better)
Translates to: CCQPHSAHAAARSRP*LHAPESPWWNQCYL
Trigger: CAAGTAGCATTGATTCCACCACGGACTCTCGGGAGCGTGGAGTCAAGGGCGAGAGCGTGCTGCAGCGTGTGCAGAGTGTGGCTGGCAACA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS GCA 90 bp AGGAACAGACAGACCTGGCCGGTACGGCCCAAGAGTGTAGCATGGTaGAAGGGGGCCCGGCCAAGGCTGTCTCTTTGGTTCACATCAGCT +
Preference number: 5 (lower is better)
Translates to: RNRQTWPVRPKSVAW*KGARPRLSLWFTSA
Trigger: AGCTGATGTGAACCAAAGAGACAGCCTTGGCCGGGCCCCCTTGCACCATGCTACACTCTTGGGCCGTACCGGCCAGGTCTGTCTGTTCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR CAA 90 bp AACCAGACAGTGCCTCTGGAGGAGGCAGGGGTGGACTTGAGCCCTCGGGCACAAAAGCGCGGCGAGTCCTaGATGCATTCCTCGAACTCT +
Preference number: 5 (lower is better)
Translates to: NQTVPLEEAGVDLSPRAQKRGES*MHSSNS
Trigger: AGAGTTCGAGGAATGCATCAAGGACTCGCCGCGCTT...TTGTGCCCGAGGGCTCAAGTCCACCCCTGCCTCCTCCAGAGGCACTGTCTGGTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR CAA 90 bp GCAACATTTCTGGGCCGGGTAGGCTGGGGTCAGGGTAGGGCTCCCGCAGCTGCCTGGAATCAATGCTACTaGTTGATGGCGACGCTGTAC +
Preference number: 5 (lower is better)
Translates to: ATFLGRVGWGQGRAPAAAWNQCY*LMATLY
Trigger: GTACAGCGTCGCCATCAACAAGTAGCATTGATTCCA...GGCAGCTGCGGGAGCCCTACCCTGACCCCAGCCTACCCGGCCCAGAAATGTTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR CAA 90 bp CCAGATGCTGGGGTCACGAGCAAGGTACTCAGGGTGACTCCCTGGGTGGGCTGCTTGATCCATGCCTCTTaGTCCTGCCTGGAACTGCTG +
Preference number: 5 (lower is better)
Translates to: PDAGVTSKVLRVTPWVGCLIHAS*SCLELL
Trigger: CAGCAGTTCCAGGCAGGACAAAGAGGCATGGATCAA...GCAGCCCACCCAGGGAGTCACCCTGAGTACCTTGCTCGTGACCCCAGCATCTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR CAA 90 bp AGGGTAGGTGGTGGGCAGAGCTCAAGCAGGACGGAGAAGCTGATTCTGCTCTGTGCTGCATCGGCCCAGTaGACTTCAGCTCCATGGGCC +
Preference number: 5 (lower is better)
Translates to: RVGGGQSSSRTEKLILLCAASAQ*TSAPWA
Trigger: GGCCCATGGAGCTGAAGTCAACTGGGCCGATGCAGC...ACAGAGCAGAATCAGCTTCTCCGTCCTGCTTGAGCTCTGCCCACCACCTACCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS TCA 90 bp AACCTCTGCAGACATTCCGAGATGACGGTGTCGCCCTGGCACTGCTaGGACAGGTCTCGGACACCGCTCACAAAGAGCCTGTTGGTGGTG +
Preference number: 5 (lower is better)
Translates to: NLCRHSEMTVSPWHC*DRSRTPLTKSLLVV
Trigger: CACCACCAACAGGCTCTTTGTGAGCGGTGTCCGAGACCTGTCTCAGCAGTGCCAGGGCGACACCGTCATCTCGGAATGTCTGCAGAGGTT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS CCA 90 bp TTCAGGAACAGACAGACCTGGCCGGTACGGCCCAAGAGTGTAGCATaGTGCAAGGGGGCCCGGCCAAGGCTGTCTCTTTGGTTCACATCA +
Preference number: 5 (lower is better)
Translates to: FRNRQTWPVRPKSVA*CKGARPRLSLWFTS
Trigger: TGATGTGAACCAAAGAGACAGCCTTGGCCGGGCCCCCTTGCACCATGCTACACTCTTGGGCCGTACCGGCCAGGTCTGTCTGTTCCTGAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR CAA 90 bp AGGAGTGAGGACTCCAGGAAGACCAGGGTCCTGGGCTGTTGGGATGAGCCCACAAAGCGCGGCGAGTCCTaGATGCATTCCTCGAACTCT +
Preference number: 5 (lower is better)
Translates to: RSEDSRKTRVLGCWDEPTKRGES*MHSSNS
Trigger: AGAGTTCGAGGAATGCATCAAGGACTCGCCGCGCTT...TGTGGGCTCATCCCAACAGCCCAGGACCCTGGTCTTCCTGGAGTCCTCACTCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR CAA 90 bp AGGAGTGAGGACTCCAGGAAGACCAGGGTCCTGGGCTGTTGGGATGAGCCCACATCCTCTTTGACAAAGTaGTGGAGCTGCTGCCGCACC +
Preference number: 5 (lower is better)
Translates to: RSEDSRKTRVLGCWDEPTSSLTK*WSCCRT
Trigger: GGTGCGGCAGCAGCTCCACAACTTTGTCAAAGAGGA...TGTGGGCTCATCCCAACAGCCCAGGACCCTGGTCTTCCTGGAGTCCTCACTCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR CAA 90 bp TGCCGACATTACTGTCCATGGATGCTCCCAGGGCAGTGTTTGCATAGTGACCAGCATGGGGCCGGTGCCTaGGGGCTTGGGCATTCCTCA +
Preference number: 5 (lower is better)
Translates to: CRHYCPWMLPGQCLHSDQHGAGA*GLGHSS
Trigger: TGAGGAATGCCCAAGCCCCAAGGCACCGGCCCCATG...CTGGTCACTATGCAAACACTGCCCTGGGAGCATCCATGGACAGTAATGTCGGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR CAA 90 bp TGCCGACATTACTGTCCATGGATGCTCCCAGGGCAGTGTTTGCATAGTGACCAGAGCACGCTCTCGCCCTaGACTCCACGCTCCCGAGAG +
Preference number: 5 (lower is better)
Translates to: CRHYCPWMLPGQCLHSDQSTLSP*TPRSRE
Trigger: CTCTCGGGAGCGTGGAGTCAAGGGCGAGAGCGTGCT...CTGGTCACTATGCAAACACTGCCCTGGGAGCATCCATGGACAGTAATGTCGGCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR CAA 90 bp AAGCTGATTCTGCTCTGTAGGGCCACAGCCATCAAGCAAGGGAGTCAGAGGCCCTCGCCACACTGGCTGTaGCCAGCCACACTCTGCACA +
Preference number: 5 (lower is better)
Translates to: KLILLCRATAIKQGSQRPSPHWL*PATLCT
Trigger: TGTGCAGAGTGTGGCTGGCAACAGCCAGTGTGGCGA...GGGCCTCTGACTCCCTTGCTTGATGGCTGTGGCCCTACAGAGCAGAATCAGCTT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR CAA 90 bp TCAAGCAAGGGAGTCAGAGGCCCTGACCCAGTGCCGACATTACTGTCCATGGATGCTGCATCGGCCCAGTaGACTTCAGCTCCATGGGCC +
Preference number: 5 (lower is better)
Translates to: SSKGVRGPDPVPTLLSMDAASAQ*TSAPWA
Trigger: GGCCCATGGAGCTGAAGTCAACTGGGCCGATGCAGC...ATCCATGGACAGTAATGTCGGCACTGGGTCAGGGCCTCTGACTCCCTTGCTTGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR CAA 90 bp TCAAGCAAGGGAGTCAGAGGCCCTGACCCAGTGCCGACATTACTGTCCATGGATGGTCAGTGGGTCCTGTaGCTCCTGGTCCAGGGCATG +
Preference number: 5 (lower is better)
Translates to: SSKGVRGPDPVPTLLSMDGQWVL*LLVQGM
Trigger: CATGCCCTGGACCAGGAGCAACAGGACCCACTGACC...ATCCATGGACAGTAATGTCGGCACTGGGTCAGGGCCTCTGACTCCCTTGCTTGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS GCA 90 bp CTGAGCCTGTGCCGAAGGCAAGAACATCTGAACTGCCATCAGAGCTaGCTCCTAGACCACTGTCACTGCTTAGACTGCGTGGACCAGCCC +
Preference number: 5 (lower is better)
Translates to: LSLCRRQEHLNCHQS*LLDHCHCLDCVDQP
Trigger: GGGCTGGTCCACGCAGTCTAAGCAGTGACAGTGGTCTAGGAGGCAGCTCTGATGGCAGTTCAGATGTTCTTGCCTTCGGCACAGGCTCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS GCA 90 bp GGCCAGGCGAAGCAATGTGACAATGTCAGCATTCGCTGCTTGAACTaGGATGGTCAGTGGGTCCTGTTGCTCCTGGTCCAGGGCATGCTG +
Preference number: 5 (lower is better)
Translates to: GQAKQCDNVSIRCLN*DGQWVLLLLVQGML
Trigger: CAGCATGCCCTGGACCAGGAGCAACAGGACCCACTGACCATCGCAGTTCAAGCAGCGAATGCTGACATTGTCACATTGCTTCGCCTGGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS GCA 90 bp AGCCATGCGGGCCAGGCGAAGCAATGTGACAATGTCAGCATTCGCTaGTTGAACTGCGATGGTCAGTGGGTCCTGTTGCTCCTGGTCCAG +
Preference number: 5 (lower is better)
Translates to: SHAGQAKQCDNVSIR*LNCDGQWVLLLLVQ
Trigger: CTGGACCAGGAGCAACAGGACCCACTGACCATCGCAGTTCAAGCAGCGAATGCTGACATTGTCACATTGCTTCGCCTGGCCCGCATGGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR CAA 90 bp AACCAGACAGTGCCTCTGGAGGAGGCAGGGGTGGACTTGAGCCCTCGGGCACAATTCCGCACATCCTCTTaGACAAAGTTGTGGAGCTGC +
Preference number: 5 (lower is better)
Translates to: NQTVPLEEAGVDLSPRAQFRTSS*TKLWSC
Trigger: GCAGCTCCACAACTTTGTCAAAGAGGATGTGCGGAA...TTGTGCCCGAGGGCTCAAGTCCACCCCTGCCTCCTCCAGAGGCACTGTCTGGTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR CAA 90 bp GGACATGCAACATTTCTGGGCCGGGTAGGCTGGGGTCAGGGTAGGGCTCCCGCACCATTACCACACCACTaGGTGCATCCACATCAAACT +
Preference number: 5 (lower is better)
Translates to: GHATFLGRVGWGQGRAPAPLPHH*VHPHQT
Trigger: AGTTTGATGTGGATGCACCAAGTGGTGTGGTAATGG...TGCGGGAGCCCTACCCTGACCCCAGCCTACCCGGCCCAGAAATGTTGCATGTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR CAA 90 bp AACCAGACAGTGCCTCTGGAGGAGGCAGGGGTGGACTTGAGCCCTCGGGCACAATGCAGCATACAGCTCTaGGTAGGTGACACGACTTCA +
Preference number: 5 (lower is better)
Translates to: NQTVPLEEAGVDLSPRAQCSIQL*VGDTTS
Trigger: TGAAGTCGTGTCACCTACCAAGAGCTGTATGCTGCA...TTGTGCCCGAGGGCTCAAGTCCACCCCTGCCTCCTCCAGAGGCACTGTCTGGTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR CAA 90 bp ATTGGGCACAGGGTGGAGAGTACCAGCTGCTTTAGGCATGGGTGCTGGCCCAGGTTGATCCATGCCTCTTaGTCCTGCCTGGAACTGCTG +
Preference number: 5 (lower is better)
Translates to: IGHRVESTSCFRHGCWPRLIHAS*SCLELL
Trigger: CAGCAGTTCCAGGCAGGACAAAGAGGCATGGATCAA...CCTGGGCCAGCACCCATGCCTAAAGCAGCTGGTACTCTCCACCCTGTGCCCAAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS TCA 90 bp GACTCCACGCTCCCGAGAGTCCGTGGTGGAATCAATGCTACTTGTTaGTGGCGACGCTGTACGGTCCAGCCTCTCACTGTAGCAGCTATC +
Preference number: 5 (lower is better)
Translates to: DSTLPRVRGGINATC*WRRCTVQPLTVAAI
Trigger: GATAGCTGCTACAGTGAGAGGCTGGACCGTACAGCGTCGCCATCAACAAGTAGCATTGATTCCACCACGGACTCTCGGGAGCGTGGAGTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS GCA 90 bp GAACATCTGAACTGCCATCAGAGCTGCCTCCTAGACCACTGTCACTaGTTAGACTGCGTGGACCAGCCCCAGCAGCCCCTGCATCAAAGT +
Preference number: 5 (lower is better)
Translates to: EHLNCHQSCLLDHCH*LDCVDQPQQPLHQS
Trigger: ACTTTGATGCAGGGGCTGCTGGGGCTGGTCCACGCAGTCTAAGCAGTGACAGTGGTCTAGGAGGCAGCTCTGATGGCAGTTCAGATGTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR CAA 90 bp ATTGGGCACAGGGTGGAGAGTACCAGCTGCTTTAGGCATGGGTGCTGGCCCAGGTTCCGCACATCCTCTTaGACAAAGTTGTGGAGCTGC +
Preference number: 5 (lower is better)
Translates to: IGHRVESTSCFRHGCWPRFRTSS*TKLWSC
Trigger: GCAGCTCCACAACTTTGTCAAAGAGGATGTGCGGAA...CCTGGGCCAGCACCCATGCCTAAAGCAGCTGGTACTCTCCACCCTGTGCCCAAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR CAA 90 bp AAGCTGATTCTGCTCTGTAGGGCCACAGCCATCAAGCAAGGGAGTCAGAGGCCCGACCAGCTGGCTGTTTaGAATGGAGAACCACCGTCG +
Preference number: 5 (lower is better)
Translates to: KLILLCRATAIKQGSQRPDQLAV*NGEPPS
Trigger: CGACGGTGGTTCTCCATTCAAAACAGCCAGCTGGTC...GGGCCTCTGACTCCCTTGCTTGATGGCTGTGGCCCTACAGAGCAGAATCAGCTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR CAA 90 bp GGAGTCAGAGGCCCTGACCCAGTGCCGACATTACTGTCCATGGATGCTCCCAGGCACATCAGCTCCGTTTaGCAGAAGGAACTCACAGAC +
Preference number: 5 (lower is better)
Translates to: GVRGPDPVPTLLSMDAPRHISSV*QKELTD
Trigger: GTCTGTGAGTTCCTTCTGCAAAACGGAGCTGATGTG...CCTGGGAGCATCCATGGACAGTAATGTCGGCACTGGGTCAGGGCCTCTGACTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS GCA 90 bp AACTGCCATCAGAGCTGCCTCCTAGACCACTGTCACTGCTTAGACTaGGTGGACCAGCCCCAGCAGCCCCTGCATCAAAGTAAGAGAAGA +
Preference number: 5 (lower is better)
Translates to: NCHQSCLLDHCHCLD*VDQPQQPLHQSKRR
Trigger: TCTTCTCTTACTTTGATGCAGGGGCTGCTGGGGCTGGTCCACGCAGTCTAAGCAGTGACAGTGGTCTAGGAGGCAGCTCTGATGGCAGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS GCA 90 bp CACTGTCCACCACTGAGCCTGTGCCGAAGGCAAGAACATCTGAACTaGCATCAGAGCTGCCTCCTAGACCACTGTCACTGCTTAGACTGC +
Preference number: 5 (lower is better)
Translates to: HCPPLSLCRRQEHLN*HQSCLLDHCHCLDC
Trigger: GCAGTCTAAGCAGTGACAGTGGTCTAGGAGGCAGCTCTGATGGCAGTTCAGATGTTCTTGCCTTCGGCACAGGCTCAGTGGTGGACAGTG
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR CAA 90 bp TCAAGCAAGGGAGTCAGAGGCCCTGACCCAGTGCCGACATTACTGTCCATGGATTGGATGGCAGCATGCTaGCGCTCCATCTCTCGCTTT +
Preference number: 5 (lower is better)
Translates to: SSKGVRGPDPVPTLLSMDWMAAC*RSISRF
Trigger: AAAGCGAGAGATGGAGCGCAAGCATGCTGCCATCCA...ATCCATGGACAGTAATGTCGGCACTGGGTCAGGGCCTCTGACTCCCTTGCTTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR CAA 90 bp AGGAGTGAGGACTCCAGGAAGACCAGGGTCCTGGGCTGTTGGGATGAGCCCACACCATTACCACACCACTaGGTGCATCCACATCAAACT +
Preference number: 5 (lower is better)
Translates to: RSEDSRKTRVLGCWDEPTPLPHH*VHPHQT
Trigger: AGTTTGATGTGGATGCACCAAGTGGTGTGGTAATGG...TGTGGGCTCATCCCAACAGCCCAGGACCCTGGTCTTCCTGGAGTCCTCACTCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR CAA 90 bp GGAGTCAGAGGCCCTGACCCAGTGCCGACATTACTGTCCATGGATGCTCCCAGGTGGAATCAATGCTACTaGTTGATGGCGACGCTGTAC +
Preference number: 5 (lower is better)
Translates to: GVRGPDPVPTLLSMDAPRWNQCY*LMATLY
Trigger: GTACAGCGTCGCCATCAACAAGTAGCATTGATTCCA...CCTGGGAGCATCCATGGACAGTAATGTCGGCACTGGGTCAGGGCCTCTGACTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR CAA 90 bp AACCAGACAGTGCCTCTGGAGGAGGCAGGGGTGGACTTGAGCCCTCGGGCACAATCAACGTATTTGTCCTaGATCCATGCCTCTTTGTCC +
Preference number: 5 (lower is better)
Translates to: NQTVPLEEAGVDLSPRAQSTYLS*IHASLS
Trigger: GGACAAAGAGGCATGGATCAAGGACAAATACGTTGA...TTGTGCCCGAGGGCTCAAGTCCACCCCTGCCTCCTCCAGAGGCACTGTCTGGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR CAA 90 bp CTAGCCAAGGGCCCCATAGTATGCAGAGGGACCCAGCCTCTGTCCTGGGACTCCTCAACGTATTTGTCCTaGATCCATGCCTCTTTGTCC +
Preference number: 5 (lower is better)
Translates to: LAKGPIVCRGTQPLSWDSSTYLS*IHASLS
Trigger: GGACAAAGAGGCATGGATCAAGGACAAATACGTTGA...GGAGTCCCAGGACAGAGGCTGGGTCCCTCTGCATACTATGGGGCCCTTGGCTAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS GCA 90 bp TTGCTGGATGGCAGCATGCTTGCGCTCCATCTCTCGCTTTTCCACTaGAGAGTCGATCACAAGCTGGTCCAACTCAGCTGCCAGCTTCTT +
Preference number: 5 (lower is better)
Translates to: LLDGSMLALHLSLFH*RVDHKLVQLSCQLL
Trigger: AAGAAGCTGGCAGCTGAGTTGGACCAGCTTGTGATCGACTCTGCAGTGGAAAAGCGAGAGATGGAGCGCAAGCATGCTGCCATCCAGCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS GCA 90 bp AGGAAAAGTCCTGCAGGAGTGTCCGTTGCTGGATGGCAGCATGCTTaGGCTCCATCTCTCGCTTTTCCACTGCAGAGTCGATCACAAGCT +
Preference number: 5 (lower is better)
Translates to: RKSPAGVSVAGWQHA*APSLAFPLQSRSQA
Trigger: AGCTTGTGATCGACTCTGCAGTGGAAAAGCGAGAGATGGAGCGCAAGCATGCTGCCATCCAGCAACGGACACTCCTGCAGGACTTTTCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000105584.10
CDS-3UTR CAA 90 bp AGGAGTGAGGACTCCAGGAAGACCAGGGTCCTGGGCTGTTGGGATGAGCCCACAATACCACTGCACAGTTaGACCAGCTTGTCCAGTTTA +
Preference number: 5 (lower is better)
Translates to: RSEDSRKTRVLGCWDEPTIPLHS*TSLSSL
Trigger: TAAACTGGACAAGCTGGTCAAACTGTGCAGTGGTAT...TGTGGGCTCATCCCAACAGCCCAGGACCCTGGTCTTCCTGGAGTCCTCACTCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR CAA 90 bp CTAGCCAAGGGCCCCATAGTATGCAGAGGGACCCAGCCTCTGTCCTGGGACTCCATTTCAAACTTCTTCTaGGCCTGGAGGACATTGATC +
Preference number: 5 (lower is better)
Translates to: LAKGPIVCRGTQPLSWDSISNFF*AWRTLI
Trigger: GATCAATGTCCTCCAGGCCAAGAAGAAGTTTGAAAT...GGAGTCCCAGGACAGAGGCTGGGTCCCTCTGCATACTATGGGGCCCTTGGCTAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR CAA 90 bp CCAGATGCTGGGGTCACGAGCAAGGTACTCAGGGTGACTCCCTGGGTGGGCTGCTTCTTTTCAACGTATTaGTCCTTGATCCATGCCTCT +
Preference number: 5 (lower is better)
Translates to: PDAGVTSKVLRVTPWVGCFFSTY*SLIHAS
Trigger: AGAGGCATGGATCAAGGACAAATACGTTGAAAAGAA...GCAGCCCACCCAGGGAGTCACCCTGAGTACCTTGCTCGTGACCCCAGCATCTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR CAA 90 bp AAGCTGATTCTGCTCTGTAGGGCCACAGCCATCAAGCAAGGGAGTCAGAGGCCCCACATCAGCTCCGTTTaGCAGAAGGAACTCACAGAC +
Preference number: 5 (lower is better)
Translates to: KLILLCRATAIKQGSQRPHISSV*QKELTD
Trigger: GTCTGTGAGTTCCTTCTGCAAAACGGAGCTGATGTG...GGGCCTCTGACTCCCTTGCTTGATGGCTGTGGCCCTACAGAGCAGAATCAGCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS CCA 90 bp TGGGTTCATCATAGGAAAAGTCCTGCAGGAGTGTCCGTTGCTGGATaGCAGCATGCTTGCGCTCCATCTCTCGCTTTTCCACTGCAGAGT +
Preference number: 5 (lower is better)
Translates to: WVHHRKSPAGVSVAG*QHACAPSLAFPLQS
Trigger: ACTCTGCAGTGGAAAAGCGAGAGATGGAGCGCAAGCATGCTGCCATCCAGCAACGGACACTCCTGCAGGACTTTTCCTATGATGAACCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000105584.10
CDS-3UTR CAA 90 bp AGGGTAGGTGGTGGGCAGAGCTCAAGCAGGACGGAGAAGCTGATTCTGCTCTGTATGTCCTCCCGCACTTaGTCAAACTGCTTCTTTGTC +
Preference number: 5 (lower is better)
Translates to: RVGGGQSSSRTEKLILLCMSSRT*SNCFFV
Trigger: GACAAAGAAGCAGTTTGACAAAGTGCGGGAGGACAT...ACAGAGCAGAATCAGCTTCTCCGTCCTGCTTGAGCTCTGCCCACCACCTACCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR CAA 90 bp GGAGTCAGAGGCCCTGACCCAGTGCCGACATTACTGTCCATGGATGCTCCCAGGATTTCAAACTTCTTCTaGGCCTGGAGGACATTGATC +
Preference number: 5 (lower is better)
Translates to: GVRGPDPVPTLLSMDAPRISNFF*AWRTLI
Trigger: GATCAATGTCCTCCAGGCCAAGAAGAAGTTTGAAAT...CCTGGGAGCATCCATGGACAGTAATGTCGGCACTGGGTCAGGGCCTCTGACTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS GCA 90 bp TGGGTTCATCATAGGAAAAGTCCCGTTGCTGGATGGCAGCATGCTTaGGCTCCATCTCTCGCTTTTCCACTGCAGAGTCGATCACAAGCT +
Preference number: 5 (lower is better)
Translates to: WVHHRKSPVAGWQHA*APSLAFPLQSRSQA
Trigger: AGCTTGTGATCGACTCTGCAGTGGAAAAGCGAGAGATGGAGCGCAAGCATGCTGCCATCCAGCAACGGGACTTTTCCTATGATGAACCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000079031.6
CDS-3UTR CAA 90 bp AAGCTGATTCTGCTCTGTAGGGCCACAGCCATCAAGCAAGGGAGTCAGAGGCCCATACCACTGCACAGTTaGACCAGCTTGTCCAGTTTA +
Preference number: 5 (lower is better)
Translates to: KLILLCRATAIKQGSQRPIPLHS*TSLSSL
Trigger: TAAACTGGACAAGCTGGTCAAACTGTGCAGTGGTAT...GGGCCTCTGACTCCCTTGCTTGATGGCTGTGGCCCTACAGAGCAGAATCAGCTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR CAA 90 bp GAGAAGCTGATTCTGCTCTGTAGGGCCACAGCCATCAAGCAAGGGAGTCAGAGGATGTCCTCCCGCACTTaGTCAAACTGCTTCTTTGTC +
Preference number: 5 (lower is better)
Translates to: EKLILLCRATAIKQGSQRMSSRT*SNCFFV
Trigger: GACAAAGAAGCAGTTTGACAAAGTGCGGGAGGACAT...CCTCTGACTCCCTTGCTTGATGGCTGTGGCCCTACAGAGCAGAATCAGCTTCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS CCA 90 bp CCTCCATTACCACACCACTTGGTGCATCCACATCAAACTCCACTTTaGGTTCATCATAGGAAAAGTCCCGTTGCTGGATGGCAGCATGCT +
Preference number: 5 (lower is better)
Translates to: PPLPHHLVHPHQTPL*VHHRKSPVAGWQHA
Trigger: AGCATGCTGCCATCCAGCAACGGGACTTTTCCTATGATGAACCCAAAGTGGAGTTTGATGTGGATGCACCAAGTGGTGTGGTAATGGAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079031.6
CDS CCA 90 bp CCTCCATTACCACACCACTTGGTGCATCCACATCAAACTCCACTTTaGGTTCATCATAGGAAAAGTCCTGCAGGAGTGTCCGTTGCTGGA +
Preference number: 5 (lower is better)
Translates to: PPLPHHLVHPHQTPL*VHHRKSPAGVSVAG
Trigger: TCCAGCAACGGACACTCCTGCAGGACTTTTCCTATGATGAACCCAAAGTGGAGTTTGATGTGGATGCACCAAGTGGTGTGGTAATGGAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105584.10
CDS GCA 90 bp GCTGGCTCTCTTGAAGAGATAGCCCTCCATTACCACACCACTTGGTaGATCCACATCAAACTCCACTTTGGGTTCATCATAGGAAAAGTC +
Preference number: 5 (lower is better)
Translates to: AGSLEEIALHYHTTW*IHIKLHFGFIIGKV
Trigger: GACTTTTCCTATGATGAACCCAAAGTGGAGTTTGATGTGGATGCACCAAGTGGTGTGGTAATGGAGGGCTATCTCTTCAAGAGAGCCAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS-3UTR CAA 90 bp TGCCGACATTACTGTCCATGGATGCTCCCAGGGCAGTGTTTGCATAGTGACCAGTTCTTTTCAACGTATTaGTCCTTGATCCATGCCTCT +
Preference number: 5 (lower is better)
Translates to: CRHYCPWMLPGQCLHSDQFFSTY*SLIHAS
Trigger: AGAGGCATGGATCAAGGACAAATACGTTGAAAAGAA...CTGGTCACTATGCAAACACTGCCCTGGGAGCATCCATGGACAGTAATGTCGGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS TCA 90 bp CAGAAGTCAACTTCCGTAGAAACTTCTTTTCAACGTATTTGTCCTTaGTCCATGCCTCTTTGTCCTGCCTGGAACTGCTGGCTGTGGGTT +
Preference number: 5 (lower is better)
Translates to: QKSTSVETSFQRICP*SMPLCPAWNCWLWV
Trigger: AACCCACAGCCAGCAGTTCCAGGCAGGACAAAGAGGCATGGATCAAGGACAAATACGTTGAAAAGAAGTTTCTACGGAAGTTGACTTCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS GCA 90 bp TTCCTCACCAAGGACAACTCCATGTCCTCCCGCACTTTGTCAAACTaGTTCTTTGTCTCTTTGAACTTCCGCACATCCTCTTTGACAAAG +
Preference number: 5 (lower is better)
Translates to: FLTKDNSMSSRTLSN*FFVSLNFRTSSLTK
Trigger: CTTTGTCAAAGAGGATGTGCGGAAGTTCAAAGAGACAAAGAAGCAGTTTGACAAAGTGCGGGAGGACATGGAGTTGTCCTTGGTGAGGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS CCA 72 bp GCCCAGCGGGGATCTGGCTGGCCACAGTCGCCACACTaGCTGTTGCCAGCCACACTCTGCACACGCTGCAGC +
Preference number: 6 (lower is better)
Translates to: AQRGSGWPQSPH*LLPATLCTRCS
Trigger: GCTGCAGCGTGTGCAGAGTGTGGCTGGCAACAGCCAGTGTGGCGACTGTGGCCAGCCAGATCCCCGCTGGGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS GCA 72 bp CGCTGCAGCCAGTGCTGGGAGGTCACGGGTACGAGCTaGCTGATGTGCCAGCAGCCCAGGATGCAGCTCACG +
Preference number: 6 (lower is better)
Translates to: RCSQCWEVTGTS*LMCQQPRMQLT
Trigger: CGTGAGCTGCATCCTGGGCTGCTGGCACATCAGGCAGCTCGTACCCGTGACCTCCCAGCACTGGCTGCAGCG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS TCA 72 bp GCAGCCAGTGCTGGGAGGTCACGGGTACGAGCTGCCTaGTGTGCCAGCAGCCCAGGATGCAGCTCACGCACA +
Preference number: 6 (lower is better)
Translates to: AASAGRSRVRAA*CASSPGCSSRT
Trigger: TGTGCGTGAGCTGCATCCTGGGCTGCTGGCACATCAGGCAGCTCGTACCCGTGACCTCCCAGCACTGGCTGC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS GCA 72 bp CCACACTGGCTGTTGCCAGCCACACTCTGCACACGCTaGAGCACGCTCTCGCCCTTGACTCCACGCTCCCGA +
Preference number: 6 (lower is better)
Translates to: PHWLLPATLCTR*STLSPLTPRSR
Trigger: TCGGGAGCGTGGAGTCAAGGGCGAGAGCGTGCTGCAGCGTGTGCAGAGTGTGGCTGGCAACAGCCAGTGTGG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS CCA 72 bp GTGAGGGCGCTGGCACTTCTGTGCCCTCCAGCGTCTTaGGGGTTCCCGGGCTGGTGCAGAAGTCAACTTCCG +
Preference number: 6 (lower is better)
Translates to: VRALALLCPPAS*GFPGWCRSQLP
Trigger: CGGAAGTTGACTTCTGCACCAGCCCGGGAACCCCCAAGACGCTGGAGGGCACAGAAGTGCCAGCGCCCTCAC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS GCA 72 bp CAGTGCTGGGAGGTCACGGGTACGAGCTGCCTGATGTaGCAGCAGCCCAGGATGCAGCTCACGCACATCTGC +
Preference number: 6 (lower is better)
Translates to: QCWEVTGTSCLM*QQPRMQLTHIC
Trigger: GCAGATGTGCGTGAGCTGCATCCTGGGCTGCTGGCACATCAGGCAGCTCGTACCCGTGACCTCCCAGCACTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS GCA 72 bp CAGACCTGGCCGGTACGGCCCAAGAGTGTAGCATGGTaGAAGGGGGCCCGGCCAAGGCTGTCTCTTTGGTTC +
Preference number: 6 (lower is better)
Translates to: QTWPVRPKSVAW*KGARPRLSLWF
Trigger: GAACCAAAGAGACAGCCTTGGCCGGGCCCCCTTGCACCATGCTACACTCTTGGGCCGTACCGGCCAGGTCTG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS GCA 72 bp TGGAGGCCAATGAACTCCTGGATGCACCTGCGGTACTaGAGCTCTGTAGGACTGCTGCCCGGCAGGGGTCCC +
Preference number: 6 (lower is better)
Translates to: WRPMNSWMHLRY*SSVGLLPGRGP
Trigger: GGGACCCCTGCCGGGCAGCAGTCCTACAGAGCTGCAGTACCGCAGGTGCATCCAGGAGTTCATTGGCCTCCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS CCA 72 bp GTGACAGTGAGGGCACCTGTGGCCTCCTCTACTTCATaGGGCCGGTGCCTTGGGGCTTGGGCATTCCTCACC +
Preference number: 6 (lower is better)
Translates to: VTVRAPVASSTS*GRCLGAWAFLT
Trigger: GGTGAGGAATGCCCAAGCCCCAAGGCACCGGCCCCATGAAGTAGAGGAGGCCACAGGTGCCCTCACTGTCAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS CCA 72 bp AGACAGACCTGGCCGGTACGGCCCAAGAGTGTAGCATaGTGCAAGGGGGCCCGGCCAAGGCTGTCTCTTTGG +
Preference number: 6 (lower is better)
Translates to: RQTWPVRPKSVA*CKGARPRLSLW
Trigger: CCAAAGAGACAGCCTTGGCCGGGCCCCCTTGCACCATGCTACACTCTTGGGCCGTACCGGCCAGGTCTGTCT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS CAA 72 bp GCCACACTCTGCACACGCTGCAGCACGCTCTCGCCCTaGACTCCACGCTCCCGAGAGTCCGTGGTGGAATCA +
Preference number: 6 (lower is better)
Translates to: ATLCTRCSTLSP*TPRSRESVVES
Trigger: TGATTCCACCACGGACTCTCGGGAGCGTGGAGTCAAGGGCGAGAGCGTGCTGCAGCGTGTGCAGAGTGTGGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS CAA 72 bp TGTGAGGGCGCTGGCACTTCTGTGCCCTCCAGCGTCTaGGGGGTTCCCGGGCTGGTGCAGAAGTCAACTTCC +
Preference number: 6 (lower is better)
Translates to: CEGAGTSVPSSV*GVPGLVQKSTS
Trigger: GGAAGTTGACTTCTGCACCAGCCCGGGAACCCCCAAGACGCTGGAGGGCACAGAAGTGCCAGCGCCCTCACA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS TCA 72 bp CCACACTCTGCACACGCTGCAGCACGCTCTCGCCCTTaGCTCCACGCTCCCGAGAGTCCGTGGTGGAATCAA +
Preference number: 6 (lower is better)
Translates to: PHSAHAAARSRP*LHAPESPWWNQ
Trigger: TTGATTCCACCACGGACTCTCGGGAGCGTGGAGTCAAGGGCGAGAGCGTGCTGCAGCGTGTGCAGAGTGTGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS TCA 72 bp GGAGTCTCGGCGGAACTTGCGCTCCATAGTAGCAGCTaGGGACAAAGCAGCAACGGAGGGCAGGACGGGCTC +
Preference number: 6 (lower is better)
Translates to: GVSAELALHSSS*GQSSNGGQDGL
Trigger: GAGCCCGTCCTGCCCTCCGTTGCTGCTTTGTCCTCAGCTGCTACTATGGAGCGCAAGTTCCGCCGAGACTCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS GCA 72 bp AGGGCACCTGTGGCCTCCTCTACTTCATGGGGCCGGTaGCTTGGGGCTTGGGCATTCCTCACCAAGGACAAC +
Preference number: 6 (lower is better)
Translates to: RAPVASSTSWGR*LGAWAFLTKDN
Trigger: GTTGTCCTTGGTGAGGAATGCCCAAGCCCCAAGGCACCGGCCCCATGAAGTAGAGGAGGCCACAGGTGCCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS CAA 90 bp GGCACCTGTGGCCTCCTCTACTTCATGGGGCCGGTGCCTTGGGGCTaGGGCATTCCTCACCAAGGACAACTCCATGTCCTCCCGCACTTT +
Preference number: 6 (lower is better)
Translates to: GTCGLLYFMGPVPWG*GIPHQGQLHVLPHF
Trigger: AAAGTGCGGGAGGACATGGAGTTGTCCTTGGTGAGGAATGCCCAAGCCCCAAGGCACCGGCCCCATGAAGTAGAGGAGGCCACAGGTGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS GCA 72 bp AACTGCCATCAGAGCTGCCTCCTAGACCACTGTCACTaGTTAGACTGCGTGGACCAGCCCCAGCAGCCCCTG +
Preference number: 6 (lower is better)
Translates to: NCHQSCLLDHCH*LDCVDQPQQPL
Trigger: CAGGGGCTGCTGGGGCTGGTCCACGCAGTCTAAGCAGTGACAGTGGTCTAGGAGGCAGCTCTGATGGCAGTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS GCA 72 bp ATGTGCCAGCAGCCCAGGATGCAGCTCACGCACATCTaGCAAGCTCCAGGCCTCTGCTTCTCCATCGACCTC +
Preference number: 6 (lower is better)
Translates to: MCQQPRMQLTHI*QAPGLCFSIDL
Trigger: GAGGTCGATGGAGAAGCAGAGGCCTGGAGCTTGGCAGATGTGCGTGAGCTGCATCCTGGGCTGCTGGCACAT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS CCA 72 bp GCCTCCTCTACTTCATGGGGCCGGTGCCTTGGGGCTTaGGCATTCCTCACCAAGGACAACTCCATGTCCTCC +
Preference number: 6 (lower is better)
Translates to: ASSTSWGRCLGA*AFLTKDNSMSS
Trigger: GGAGGACATGGAGTTGTCCTTGGTGAGGAATGCCCAAGCCCCAAGGCACCGGCCCCATGAAGTAGAGGAGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS CAA 72 bp GGCCTCCTCTACTTCATGGGGCCGGTGCCTTGGGGCTaGGGCATTCCTCACCAAGGACAACTCCATGTCCTC +
Preference number: 6 (lower is better)
Translates to: GLLYFMGPVPWG*GIPHQGQLHVL
Trigger: GAGGACATGGAGTTGTCCTTGGTGAGGAATGCCCAAGCCCCAAGGCACCGGCCCCATGAAGTAGAGGAGGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS CAA 72 bp CACCTGTGGCCTCCTCTACTTCATGGGGCCGGTGCCTaGGGGCTTGGGCATTCCTCACCAAGGACAACTCCA +
Preference number: 6 (lower is better)
Translates to: HLWPPLLHGAGA*GLGHSSPRTTP
Trigger: TGGAGTTGTCCTTGGTGAGGAATGCCCAAGCCCCAAGGCACCGGCCCCATGAAGTAGAGGAGGCCACAGGTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS CAA 90 bp CTGTTGCCAGCCACACTCTGCACACGCTGCAGCACGCTCTCGCCCTaGACTCCACGCTCCCGAGAGTCCGTGGTGGAATCAATGCTACTT +
Preference number: 6 (lower is better)
Translates to: LLPATLCTRCSTLSP*TPRSRESVVESMLL
Trigger: AAGTAGCATTGATTCCACCACGGACTCTCGGGAGCGTGGAGTCAAGGGCGAGAGCGTGCTGCAGCGTGTGCAGAGTGTGGCTGGCAACAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS CAA 90 bp AGGGAGTCCAGCTCATCAGGGCAGAAGAGGGAGTCTCGGCGGAACTaGCGCTCCATAGTAGCAGCTGAGGACAAAGCAGCAACGGAGGGC +
Preference number: 6 (lower is better)
Translates to: RESSSSGQKRESRRN*RSIVAAEDKAATEG
Trigger: GCCCTCCGTTGCTGCTTTGTCCTCAGCTGCTACTATGGAGCGCAAGTTCCGCCGAGACTCCCTCTTCTGCCCTGATGAGCTGGACTCCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS TCA 72 bp AGACATTCCGAGATGACGGTGTCGCCCTGGCACTGCTaGGACAGGTCTCGGACACCGCTCACAAAGAGCCTG +
Preference number: 6 (lower is better)
Translates to: RHSEMTVSPWHC*DRSRTPLTKSL
Trigger: CAGGCTCTTTGTGAGCGGTGTCCGAGACCTGTCTCAGCAGTGCCAGGGCGACACCGTCATCTCGGAATGTCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS GCA 72 bp CAGAGCTGCCTCCTAGACCACTGTCACTGCTTAGACTaGGTGGACCAGCCCCAGCAGCCCCTGCATCAAAGT +
Preference number: 6 (lower is better)
Translates to: QSCLLDHCHCLD*VDQPQQPLHQS
Trigger: ACTTTGATGCAGGGGCTGCTGGGGCTGGTCCACGCAGTCTAAGCAGTGACAGTGGTCTAGGAGGCAGCTCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS CAA 90 bp ATCTGGACTTTCCCGGTAGGCAGAGGCGATGCTAGCCTGCACAGCTaGAACCCAAGCCTGTCGCAGCTTCTCCGAGTCAGCCTGCAGCAT +
Preference number: 6 (lower is better)
Translates to: IWTFPVGRGDASLHS*NPSLSQLLRVSLQH
Trigger: ATGCTGCAGGCTGACTCGGAGAAGCTGCGACAGGCTTGGGTTCAAGCTGTGCAGGCTAGCATCGCCTCTGCCTACCGGGAAAGTCCAGAT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS GCA 72 bp CCTGCAGGAGTGTCCGTTGCTGGATGGCAGCATGCTTaGGCTCCATCTCTCGCTTTTCCACTGCAGAGTCGA +
Preference number: 6 (lower is better)
Translates to: PAGVSVAGWQHA*APSLAFPLQSR
Trigger: TCGACTCTGCAGTGGAAAAGCGAGAGATGGAGCGCAAGCATGCTGCCATCCAGCAACGGACACTCCTGCAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105584.10
CDS CCA 72 bp CTGCCTGGAACTGCTGGCTGTGGGTTTCCTAACGCCTaGGCCCTCACACTGGGCTTCATAGATCTGGTTCAC +
Preference number: 6 (lower is better)
Translates to: LPGTAGCGFPNA*ALTLGFIDLVH
Trigger: GTGAACCAGATCTATGAAGCCCAGTGTGAGGGCCCAGGCGTTAGGAAACCCACAGCCAGCAGTTCCAGGCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS CAA 72 bp CACGCTCCCGAGAGTCCGTGGTGGAATCAATGCTACTaGTTGATGGCGACGCTGTACGGTCCAGCCTCTCAC +
Preference number: 6 (lower is better)
Translates to: HAPESPWWNQCY*LMATLYGPASH
Trigger: GTGAGAGGCTGGACCGTACAGCGTCGCCATCAACAAGTAGCATTGATTCCACCACGGACTCTCGGGAGCGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS GCA 72 bp GGCAGCATGCTTGCGCTCCATCTCTCGCTTTTCCACTaGAGAGTCGATCACAAGCTGGTCCAACTCAGCTGC +
Preference number: 6 (lower is better)
Translates to: GSMLALHLSLFH*RVDHKLVQLSC
Trigger: GCAGCTGAGTTGGACCAGCTTGTGATCGACTCTGCAGTGGAAAAGCGAGAGATGGAGCGCAAGCATGCTGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS GCA 72 bp CCACTGAGCCTGTGCCGAAGGCAAGAACATCTGAACTaGCATCAGAGCTGCCTCCTAGACCACTGTCACTGC +
Preference number: 6 (lower is better)
Translates to: PLSLCRRQEHLN*HQSCLLDHCHC
Trigger: GCAGTGACAGTGGTCTAGGAGGCAGCTCTGATGGCAGTTCAGATGTTCTTGCCTTCGGCACAGGCTCAGTGG
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS CCA 72 bp AATGTCAGCATTCGCTGCTTGAACTGCGATGGTCAGTaGGTCCTGTTGCTCCTGGTCCAGGGCATGCTGGTC +
Preference number: 6 (lower is better)
Translates to: NVSIRCLNCDGQ*VLLLLVQGMLV
Trigger: GACCAGCATGCCCTGGACCAGGAGCAACAGGACCCACTGACCATCGCAGTTCAAGCAGCGAATGCTGACATT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS CAA 72 bp GCTCCCGAGAGTCCGTGGTGGAATCAATGCTACTTGTaGATGGCGACGCTGTACGGTCCAGCCTCTCACTGT +
Preference number: 6 (lower is better)
Translates to: APESPWWNQCYL*MATLYGPASHC
Trigger: ACAGTGAGAGGCTGGACCGTACAGCGTCGCCATCAACAAGTAGCATTGATTCCACCACGGACTCTCGGGAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS CAA 72 bp AGCTCATCAGGGCAGAAGAGGGAGTCTCGGCGGAACTaGCGCTCCATAGTAGCAGCTGAGGACAAAGCAGCA +
Preference number: 6 (lower is better)
Translates to: SSSGQKRESRRN*RSIVAAEDKAA
Trigger: TGCTGCTTTGTCCTCAGCTGCTACTATGGAGCGCAAGTTCCGCCGAGACTCCCTCTTCTGCCCTGATGAGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS CAA 72 bp AAGGAACCCCCTAGTACAGCCTGCACCAATGGGGTCTaGCCCTCATCTGCTGCATCGGCCCAGTTGACTTCA +
Preference number: 6 (lower is better)
Translates to: KEPPSTACTNGV*PSSAASAQLTS
Trigger: TGAAGTCAACTGGGCCGATGCAGCAGATGAGGGCAAGACCCCATTGGTGCAGGCTGTACTAGGGGGTTCCTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS TCA 72 bp CTCCCGAGAGTCCGTGGTGGAATCAATGCTACTTGTTaGTGGCGACGCTGTACGGTCCAGCCTCTCACTGTA +
Preference number: 6 (lower is better)
Translates to: LPRVRGGINATC*WRRCTVQPLTV
Trigger: TACAGTGAGAGGCTGGACCGTACAGCGTCGCCATCAACAAGTAGCATTGATTCCACCACGGACTCTCGGGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS TCA 72 bp TCATCTCCTCAGCCATGCGGGCCAGGCGAAGCAATGTaGCAATGTCAGCATTCGCTGCTTGAACTGCGATGG +
Preference number: 6 (lower is better)
Translates to: SSPQPCGPGEAM*QCQHSLLELRW
Trigger: CCATCGCAGTTCAAGCAGCGAATGCTGACATTGTCACATTGCTTCGCCTGGCCCGCATGGCTGAGGAGATGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS CAA 72 bp GTCTCTTTGAACTTCCGCACATCCTCTTTGACAAAGTaGTGGAGCTGCTGCCGCACCGATCTCTGGGCCTGG +
Preference number: 6 (lower is better)
Translates to: VSLNFRTSSLTK*WSCCRTDLWAW
Trigger: CCAGGCCCAGAGATCGGTGCGGCAGCAGCTCCACAACTTTGTCAAAGAGGATGTGCGGAAGTTCAAAGAGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS TCA 72 bp AGGCGAAGCAATGTGACAATGTCAGCATTCGCTGCTTaGACTGCGATGGTCAGTGGGTCCTGTTGCTCCTGG +
Preference number: 6 (lower is better)
Translates to: RRSNVTMSAFAA*TAMVSGSCCSW
Trigger: CCAGGAGCAACAGGACCCACTGACCATCGCAGTTCAAGCAGCGAATGCTGACATTGTCACATTGCTTCGCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS GCA 72 bp CATAGGAAAAGTCCCGTTGCTGGATGGCAGCATGCTTaGGCTCCATCTCTCGCTTTTCCACTGCAGAGTCGA +
Preference number: 6 (lower is better)
Translates to: HRKSPVAGWQHA*APSLAFPLQSR
Trigger: TCGACTCTGCAGTGGAAAAGCGAGAGATGGAGCGCAAGCATGCTGCCATCCAGCAACGGGACTTTTCCTATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000079031.6
CDS GCA 72 bp TGCCGAAGGCAAGAACATCTGAACTGCCATCAGAGCTaGCTCCTAGACCACTGTCACTGCTTAGACTGCGTG +
Preference number: 6 (lower is better)
Translates to: CRRQEHLNCHQS*LLDHCHCLDCV
Trigger: CACGCAGTCTAAGCAGTGACAGTGGTCTAGGAGGCAGCTCTGATGGCAGTTCAGATGTTCTTGCCTTCGGCA
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS GCA 72 bp AACTCACAGACAATCAAGGAACCCCCTAGTACAGCCTaGACCAATGGGGTCTTGCCCTCATCTGCTGCATCG +
Preference number: 6 (lower is better)
Translates to: NSQTIKEPPSTA*TNGVLPSSAAS
Trigger: CGATGCAGCAGATGAGGGCAAGACCCCATTGGTGCAGGCTGTACTAGGGGGTTCCTTGATTGTCTGTGAGTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS CCA 72 bp TCTTTGAACTTCCGCACATCCTCTTTGACAAAGTTGTaGAGCTGCTGCCGCACCGATCTCTGGGCCTGGTCA +
Preference number: 6 (lower is better)
Translates to: SLNFRTSSLTKL*SCCRTDLWAWS
Trigger: TGACCAGGCCCAGAGATCGGTGCGGCAGCAGCTCCACAACTTTGTCAAAGAGGATGTGCGGAAGTTCAAAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS CCA 72 bp CATAGGAAAAGTCCTGCAGGAGTGTCCGTTGCTGGATaGCAGCATGCTTGCGCTCCATCTCTCGCTTTTCCA +
Preference number: 6 (lower is better)
Translates to: HRKSPAGVSVAG*QHACAPSLAFP
Trigger: TGGAAAAGCGAGAGATGGAGCGCAAGCATGCTGCCATCCAGCAACGGACACTCCTGCAGGACTTTTCCTATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000105584.10
CDS GCA 72 bp AAGCAATGTGACAATGTCAGCATTCGCTGCTTGAACTaGGATGGTCAGTGGGTCCTGTTGCTCCTGGTCCAG +
Preference number: 6 (lower is better)
Translates to: KQCDNVSIRCLN*DGQWVLLLLVQ
Trigger: CTGGACCAGGAGCAACAGGACCCACTGACCATCGCAGTTCAAGCAGCGAATGCTGACATTGTCACATTGCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS TCA 72 bp ATCTCTGGGCCTGGTCAAACAGGATCGTGTGATAGTTaGCCATCTCCTGTAGGCTGTCTCCAAACCTCTGCA +
Preference number: 6 (lower is better)
Translates to: ISGPGQTGSCDS*PSPVGCLQTSA
Trigger: TGCAGAGGTTTGGAGACAGCCTACAGGAGATGGTCAACTATCACACGATCCTGTTTGACCAGGCCCAGAGAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS GCA 72 bp TCAACGTATTTGTCCTTGATCCATGCCTCTTTGTCCTaGCTGGAACTGCTGGCTGTGGGTTTCCTAACGCCT +
Preference number: 6 (lower is better)
Translates to: STYLSLIHASLS*LELLAVGFLTP
Trigger: AGGCGTTAGGAAACCCACAGCCAGCAGTTCCAGGCAGGACAAAGAGGCATGGATCAAGGACAAATACGTTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS CCA 72 bp CTTTGGGTTCATCATAGGAAAAGTCCCGTTGCTGGATaGCAGCATGCTTGCGCTCCATCTCTCGCTTTTCCA +
Preference number: 6 (lower is better)
Translates to: LWVHHRKSPVAG*QHACAPSLAFP
Trigger: TGGAAAAGCGAGAGATGGAGCGCAAGCATGCTGCCATCCAGCAACGGGACTTTTCCTATGATGAACCCAAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000079031.6
CDS CCA 72 bp CCACACCACTTGGTGCATCCACATCAAACTCCACTTTaGGTTCATCATAGGAAAAGTCCCGTTGCTGGATGG +
Preference number: 6 (lower is better)
Translates to: PHHLVHPHQTPL*VHHRKSPVAGW
Trigger: CCATCCAGCAACGGGACTTTTCCTATGATGAACCCAAAGTGGAGTTTGATGTGGATGCACCAAGTGGTGTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079031.6
CDS CCA 72 bp CCACACCACTTGGTGCATCCACATCAAACTCCACTTTaGGTTCATCATAGGAAAAGTCCTGCAGGAGTGTCC +
Preference number: 6 (lower is better)
Translates to: PHHLVHPHQTPL*VHHRKSPAGVS
Trigger: GGACACTCCTGCAGGACTTTTCCTATGATGAACCCAAAGTGGAGTTTGATGTGGATGCACCAAGTGGTGTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105584.10
CDS CAA 72 bp CCGGCTTCAATCATACCACTGCACAGTTTGACCAGCTaGTCCAGTTTAGCCTCGATCTCAACCACATCTGTT +
Preference number: 6 (lower is better)
Translates to: PASIIPLHSLTS*SSLASISTTSV
Trigger: AACAGATGTGGTTGAGATCGAGGCTAAACTGGACAAGCTGGTCAAACTGTGCAGTGGTATGATTGAAGCCGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS CAA 90 bp GCAGAAGTCAACTTCCGTAGAAACTTCTTTTCAACGTATTTGTCCTaGATCCATGCCTCTTTGTCCTGCCTGGAACTGCTGGCTGTGGGT +
Preference number: 6 (lower is better)
Translates to: AEVNFRRNFFSTYLS*IHASLSCLELLAVG
Trigger: ACCCACAGCCAGCAGTTCCAGGCAGGACAAAGAGGCATGGATCAAGGACAAATACGTTGAAAAGAAGTTTCTACGGAAGTTGACTTCTGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS CCA 72 bp TGTAGGAGGCTATACCCCTGCTGGAAGAAGCTGTACTaGGCATGCATGAAGGACAGCATAGAATCTAAGATT +
Preference number: 6 (lower is better)
Translates to: CRRLYPCWKKLY*ACMKDSIESKI
Trigger: AATCTTAGATTCTATGCTGTCCTTCATGCATGCCCAGTACAGCTTCTTCCAGCAGGGGTATAGCCTCCTACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS CCA 72 bp TCTCTTGAAGAGATAGCCCTCCATTACCACACCACTTaGTGCATCCACATCAAACTCCACTTTGGGTTCATC +
Preference number: 6 (lower is better)
Translates to: SLEEIALHYHTT*CIHIKLHFGFI
Trigger: GATGAACCCAAAGTGGAGTTTGATGTGGATGCACCAAGTGGTGTGGTAATGGAGGGCTATCTCTTCAAGAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS TCA 72 bp ACTTCCGTAGAAACTTCTTTTCAACGTATTTGTCCTTaGTCCATGCCTCTTTGTCCTGCCTGGAACTGCTGG +
Preference number: 6 (lower is better)
Translates to: TSVETSFQRICP*SMPLCPAWNCW
Trigger: CCAGCAGTTCCAGGCAGGACAAAGAGGCATGGATCAAGGACAAATACGTTGAAAAGAAGTTTCTACGGAAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS GCA 72 bp AGGCTATACCCCTGCTGGAAGAAGCTGTACTGGGCATaGATGAAGGACAGCATAGAATCTAAGATTTCAAAC +
Preference number: 6 (lower is better)
Translates to: RLYPCWKKLYWA*MKDSIESKISN
Trigger: GTTTGAAATCTTAGATTCTATGCTGTCCTTCATGCATGCCCAGTACAGCTTCTTCCAGCAGGGGTATAGCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS GCA 72 bp CTTGAAGAGATAGCCCTCCATTACCACACCACTTGGTaGATCCACATCAAACTCCACTTTGGGTTCATCATA +
Preference number: 6 (lower is better)
Translates to: LEEIALHYHTTW*IHIKLHFGFII
Trigger: TATGATGAACCCAAAGTGGAGTTTGATGTGGATGCACCAAGTGGTGTGGTAATGGAGGGCTATCTCTTCAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS CAA 72 bp TCCTCCCGCACTTTGTCAAACTGCTTCTTTGTCTCTTaGAACTTCCGCACATCCTCTTTGACAAAGTTGTGG +
Preference number: 6 (lower is better)
Translates to: SSRTLSNCFFVS*NFRTSSLTKLW
Trigger: CCACAACTTTGTCAAAGAGGATGTGCGGAAGTTCAAAGAGACAAAGAAGCAGTTTGACAAAGTGCGGGAGGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10
CDS CAA 72 bp AACTTCCGTAGAAACTTCTTTTCAACGTATTTGTCCTaGATCCATGCCTCTTTGTCCTGCCTGGAACTGCTG +
Preference number: 6 (lower is better)
Translates to: NFRRNFFSTYLS*IHASLSCLELL
Trigger: CAGCAGTTCCAGGCAGGACAAAGAGGCATGGATCAAGGACAAATACGTTGAAAAGAAGTTTCTACGGAAGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079031.6
ENSMUST00000105584.10