RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ACADVL (Mus musculus)

Ensembl gene IDs: ENSMUSG00000018574

Ensembl transcript IDs: ENSMUST00000018718.8, ENSMUST00000102574.10

Found 125 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS-3UTR GCA 90 bp CTCCATCACCCCCATAAAGGGTTTTGGCATCAGAGAAGGCACATGACCTTGCCATGGCTTGTCCAGAACTaGCTGAGTGGCCTCCCTGGC +
Preference number: 4 (lower is better)
Translates to: LHHPHKGFWHQRRHMTLPWLVQN*LSGLPG
Trigger: GCCAGGGAGGCCACTCAGGCAGTTCTGGACAAGCCA...TGGCAAGGTCATGTGCCTTCTCTGATGCCAAAACCCTTTATGGGGGTGATGGAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102574.10
CDS-3UTR CCA 90 bp CATAAAGGGTTTTGGCATCAGAGAAGGCACATGACCTTGCCAGGGCCTGATTGGCACAGGGGCTGGGTATaGCTGAGCTTCGGATGGAGG +
Preference number: 4 (lower is better)
Translates to: HKGFWHQRRHMTLPGPDWHRGWV*LSFGWR
Trigger: CCTCCATCCGAAGCTCAGCCATACCCAGCCCCTGTG...CCAATCAGGCCCTGGCAAGGTCATGTGCCTTCTCTGATGCCAAAACCCTTTATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102574.10
CDS-3UTR TCA 90 bp CATCACCCCCATAAAGGGTTTTGGCATCAGAGAAGGCACATGACCTTGCCAGGGATGCCCCCAGTTCCTTaGGTCCCTGCAAAGTGTCGT +
Preference number: 4 (lower is better)
Translates to: HHPHKGFWHQRRHMTLPGMPPVP*VPAKCR
Trigger: ACGACACTTTGCAGGGACTCAAGGAACTGGGGGCAT...CCCTGGCAAGGTCATGTGCCTTCTCTGATGCCAAAACCCTTTATGGGGGTGATG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000102574.10
CDS-3UTR GCA 90 bp CATAAAGGGTTTTGGCATCAGAGAAGGCACATGACCTTGCCAGGGCCTGATTGGGGATTTCATGGTGCCTaGGAGGGTTGCAGCCATCCC +
Preference number: 4 (lower is better)
Translates to: HKGFWHQRRHMTLPGPDWGFHGA*EGCSHP
Trigger: GGGATGGCTGCAACCCTCGCAGGCACCATGAAATCC...CCAATCAGGCCCTGGCAAGGTCATGTGCCTTCTCTGATGCCAAAACCCTTTATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102574.10
CDS-3UTR GCA 90 bp CCCCATAAAGGGTTTTGGCATCAGAGAAGGCACATGACCTTGCCAGGGCCTGATTTGGATGCACTCATCTaGCACTTTCCAGGCCGCCTC +
Preference number: 4 (lower is better)
Translates to: PHKGFWHQRRHMTLPGPDLDALI*HFPGRL
Trigger: GAGGCGGCCTGGAAAGTGGCAGATGAGTGCATCCAA...ATCAGGCCCTGGCAAGGTCATGTGCCTTCTCTGATGCCAAAACCCTTTATGGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102574.10
CDS-3UTR CCA 90 bp CATCACCCCCATAAAGGGTTTTGGCATCAGAGAAGGCACATGACCTTGCCAGGGCACACGCTCCACCCCTaGTTCCTTCATGAAGCCCAT +
Preference number: 4 (lower is better)
Translates to: HHPHKGFWHQRRHMTLPGHTLHP*FLHEAH
Trigger: ATGGGCTTCATGAAGGAACCAGGGGTGGAGCGTGTG...CCCTGGCAAGGTCATGTGCCTTCTCTGATGCCAAAACCCTTTATGGGGGTGATG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000102574.10
CDS-3UTR CCA 90 bp CATCACCCCCATAAAGGGTTTTGGCATCAGAGAAGGCACATGACCTTGCCAGGGTGTGTTTCACCAGCTTaGCCTCCACCACGGTGGCAA +
Preference number: 4 (lower is better)
Translates to: HHPHKGFWHQRRHMTLPGCVSPA*PPPRWQ
Trigger: TTGCCACCGTGGTGGAGGCCAAGCTGGTGAAACACA...CCCTGGCAAGGTCATGTGCCTTCTCTGATGCCAAAACCCTTTATGGGGGTGATG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102574.10
CDS-3UTR CCA 90 bp GTACTCCATCACCCCCATAAAGGGTTTTGGCATCAGAGAAGGCACATGACCTTGTGGCATAGAGGTCAATaGCGCCGTCCGCCAGTCGCT +
Preference number: 4 (lower is better)
Translates to: VLHHPHKGFWHQRRHMTLWHRGQ*RRPPVA
Trigger: AGCGACTGGCGGACGGCGCCATTGACCTCTATGCCA...CAAGGTCATGTGCCTTCTCTGATGCCAAAACCCTTTATGGGGGTGATGGAGTAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102574.10
CDS-3UTR GCA 90 bp CCCCATAAAGGGTTTTGGCATCAGAGAAGGCACATGACCTTGCCAGGGCCTGATAGTTCCTTGAGTCCCTaGAAAGTGTCGTCCTCCACC +
Preference number: 4 (lower is better)
Translates to: PHKGFWHQRRHMTLPGPDSSLSP*KVSSST
Trigger: GGTGGAGGACGACACTTTGCAGGGACTCAAGGAACT...ATCAGGCCCTGGCAAGGTCATGTGCCTTCTCTGATGCCAAAACCCTTTATGGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102574.10
CDS-3UTR GCA 90 bp CATAAAGGGTTTTGGCATCAGAGAAGGCACATGACCTTGCCAGGGCCTGATTGGTCTCAGCTGTTTGCCTaGTTCTCCCATCAGGAGGCC +
Preference number: 4 (lower is better)
Translates to: HKGFWHQRRHMTLPGPDWSQLFA*FSHQEA
Trigger: GGCCTCCTGATGGGAGAAGCAGGCAAACAGCTGAGA...CCAATCAGGCCCTGGCAAGGTCATGTGCCTTCTCTGATGCCAAAACCCTTTATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102574.10
CDS-3UTR GCA 90 bp CCCCATAAAGGGTTTTGGCATCAGAGAAGGCACATGACCTTGCCAGGGCCTGATTCCGTCTCAGCTGTTTaGCTGCTTCTCCCATCAGGA +
Preference number: 4 (lower is better)
Translates to: PHKGFWHQRRHMTLPGPDSVSAV*LLLPSG
Trigger: TCCTGATGGGAGAAGCAGGCAAACAGCTGAGACGGA...ATCAGGCCCTGGCAAGGTCATGTGCCTTCTCTGATGCCAAAACCCTTTATGGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102574.10
CDS-3UTR CCA 90 bp CATCACCCCCATAAAGGGTTTTGGCATCAGAGAAGGCACATGACCTTGCCAGGGCCAAGGCGTCGTTCTTaGCAGGGTCATTCACTTCCT +
Preference number: 4 (lower is better)
Translates to: HHPHKGFWHQRRHMTLPGPRRRS*QGHSLP
Trigger: AGGAAGTGAATGACCCTGCCAAGAACGACGCCTTGG...CCCTGGCAAGGTCATGTGCCTTCTCTGATGCCAAAACCCTTTATGGGGGTGATG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102574.10
CDS-3UTR CCA 90 bp CATAAAGGGTTTTGGCATCAGAGAAGGCACATGACCTTGCCAGGGCCTGATTGGAACCACCCAGCTCGCTaGGTACTTGCAGGCCAAATG +
Preference number: 4 (lower is better)
Translates to: HKGFWHQRRHMTLPGPDWNHPAR*VLAGQM
Trigger: CATTTGGCCTGCAAGTACCCAGCGAGCTGGGTGGTT...CCAATCAGGCCCTGGCAAGGTCATGTGCCTTCTCTGATGCCAAAACCCTTTATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102574.10
CDS-3UTR CCA 90 bp CTCCATCACCCCCATAAAGGGTTTTGGCATCAGAGAAGGCACATGACCTTGCCATGGCCTCCACCACGGTaGCAAATTGATCCAGAGCCT +
Preference number: 4 (lower is better)
Translates to: LHHPHKGFWHQRRHMTLPWPPPR*QIDPEP
Trigger: AGGCTCTGGATCAATTTGCCACCGTGGTGGAGGCCA...TGGCAAGGTCATGTGCCTTCTCTGATGCCAAAACCCTTTATGGGGGTGATGGAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102574.10
CDS-3UTR TCA 90 bp CATAAAGGGTTTTGGCATCAGAGAAGGCACATGACCTTGCCAGGGCCTGATTGGGTGCCTGTTCTTCACTaGGCACAGATGGGTATGGGA +
Preference number: 4 (lower is better)
Translates to: HKGFWHQRRHMTLPGPDWVPVLH*AQMGMG
Trigger: TCCCATACCCATCTGTGCTCAGTGAAGAACAGGCAC...CCAATCAGGCCCTGGCAAGGTCATGTGCCTTCTCTGATGCCAAAACCCTTTATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102574.10
CDS-3UTR TCA 90 bp GTACTCCATCACCCCCATAAAGGGTTTTGGCATCAGAGAAGGCACATGACCTTGCCAGGCCCCCATTACTaGTCCAGATCTTGCTCCCAT +
Preference number: 4 (lower is better)
Translates to: VLHHPHKGFWHQRRHMTLPGPHY*SRSCSH
Trigger: ATGGGAGCAAGATCTGGATCAGTAATGGGGGCCTGG...CAAGGTCATGTGCCTTCTCTGATGCCAAAACCCTTTATGGGGGTGATGGAGTAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000102574.10
CDS-3UTR TCA 90 bp CTCCATCACCCCCATAAAGGGTTTTGGCATCAGAGAAGGCACATGACCTTGCCATCTTGGCAAAGACAGTaGAAATGTCAGCCAGGCCCC +
Preference number: 4 (lower is better)
Translates to: LHHPHKGFWHQRRHMTLPSWQRQ*KCQPGP
Trigger: GGGGCCTGGCTGACATTTTCACTGTCTTTGCCAAGA...TGGCAAGGTCATGTGCCTTCTCTGATGCCAAAACCCTTTATGGGGGTGATGGAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102574.10
CDS-3UTR GCA 90 bp CTCCATCACCCCCATAAAGGGTTTTGGCATCAGAGAAGGCACATGACCTTGCCACACCAAGGTCATGCATaGCCACAATCTCTGCCAAGC +
Preference number: 4 (lower is better)
Translates to: LHHPHKGFWHQRRHMTLPHQGHA*PQSLPS
Trigger: GCTTGGCAGAGATTGTGGGCATGCATGACCTTGGTG...TGGCAAGGTCATGTGCCTTCTCTGATGCCAAAACCCTTTATGGGGGTGATGGAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102574.10
CDS-3UTR GCA 90 bp CCCCATAAAGGGTTTTGGCATCAGAGAAGGCACATGACCTTGCCAGGGCCTGATCTAACACCAAGGTCATaGATGCCCACAATCTCTGCC +
Preference number: 4 (lower is better)
Translates to: PHKGFWHQRRHMTLPGPDLTPRS*MPTISA
Trigger: GGCAGAGATTGTGGGCATGCATGACCTTGGTGTTAG...ATCAGGCCCTGGCAAGGTCATGTGCCTTCTCTGATGCCAAAACCCTTTATGGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102574.10
CDS-3UTR GCA 90 bp CTCCATCACCCCCATAAAGGGTTTTGGCATCAGAGAAGGCACATGACCTTGCCACATTTTCTCATGCTGTaGCGTCGGGTAGCCCTCACT +
Preference number: 4 (lower is better)
Translates to: LHHPHKGFWHQRRHMTLPHFLML*RRVALT
Trigger: AGTGAGGGCTACCCGACGGCACAGCATGAGAAAATG...TGGCAAGGTCATGTGCCTTCTCTGATGCCAAAACCCTTTATGGGGGTGATGGAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000102574.10
CDS-3UTR CCA 90 bp CATAAAGGGTTTTGGCATCAGAGAAGGCACATGACCTTGCCAGGGCCTGATTGGATTTTCCACAGGGGCTaGGTATGGCTGAGCTTCGGA +
Preference number: 4 (lower is better)
Translates to: HKGFWHQRRHMTLPGPDWIFHRG*VWLSFG
Trigger: TCCGAAGCTCAGCCATACCCAGCCCCTGTGGAAAAT...CCAATCAGGCCCTGGCAAGGTCATGTGCCTTCTCTGATGCCAAAACCCTTTATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000102574.10
CDS-3UTR CCA 90 bp CATCACCCCCATAAAGGGTTTTGGCATCAGAGAAGGCACATGACCTTGCCAGGGATCCCTGGTCCATGTTaGCACTCAGCATGTAAGCCA +
Preference number: 4 (lower is better)
Translates to: HHPHKGFWHQRRHMTLPGIPGPC*HSACKP
Trigger: TGGCTTACATGCTGAGTGCCAACATGGACCAGGGAT...CCCTGGCAAGGTCATGTGCCTTCTCTGATGCCAAAACCCTTTATGGGGGTGATG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102574.10
CDS-3UTR TCA 90 bp CCCCATAAAGGGTTTTGGCATCAGAGAAGGCACATGACCTTGCCAGGGCCTGATGTCCCACCAGCTCTTTaGGAAATTGTGCCTGTTCTT +
Preference number: 4 (lower is better)
Translates to: PHKGFWHQRRHMTLPGPDVPPAL*EIVPVL
Trigger: AAGAACAGGCACAATTTCTCAAAGAGCTGGTGGGAC...ATCAGGCCCTGGCAAGGTCATGTGCCTTCTCTGATGCCAAAACCCTTTATGGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102574.10
CDS-3UTR TCA 90 bp CATCACCCCCATAAAGGGTTTTGGCATCAGAGAAGGCACATGACCTTGCCAGGGAGAGCAAGATGCCTTTaGAACCGATGCTCTGATGAG +
Preference number: 4 (lower is better)
Translates to: HHPHKGFWHQRRHMTLPGRARCL*NRCSDE
Trigger: CTCATCAGAGCATCGGTTTCAAAGGCATCTTGCTCT...CCCTGGCAAGGTCATGTGCCTTCTCTGATGCCAAAACCCTTTATGGGGGTGATG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102574.10
CDS-3UTR TCA 90 bp CATCACCCCCATAAAGGGTTTTGGCATCAGAGAAGGCACATGACCTTGCCAGGGCTATCTGGAAGTCTTTaGATCCCTGGTCCATGTTGG +
Preference number: 4 (lower is better)
Translates to: HHPHKGFWHQRRHMTLPGLSGSL*IPGPCW
Trigger: CCAACATGGACCAGGGATTCAAAGACTTCCAGATAG...CCCTGGCAAGGTCATGTGCCTTCTCTGATGCCAAAACCCTTTATGGGGGTGATG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102574.10
CDS-3UTR TCA 90 bp GTACTCCATCACCCCCATAAAGGGTTTTGGCATCAGAGAAGGCACATGACCTTGCCTTGGAGATGCTTCTaGAGTTCCGGAAGAGCTCCT +
Preference number: 4 (lower is better)
Translates to: VLHHPHKGFWHQRRHMTLPWRCF*SSGRAP
Trigger: AGGAGCTCTTCCGGAACTTCAGAAGCATCTCCAAGG...CAAGGTCATGTGCCTTCTCTGATGCCAAAACCCTTTATGGGGGTGATGGAGTAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102574.10
CDS-3UTR GCA 90 bp CTCCATCACCCCCATAAAGGGTTTTGGCATCAGAGAAGGCACATGACCTTGCCACTCTCTGGGCCTTTGTaGCATAGAGCAAGATGCCTT +
Preference number: 4 (lower is better)
Translates to: LHHPHKGFWHQRRHMTLPLSGPL*HRARCL
Trigger: AAGGCATCTTGCTCTATGGCACAAAGGCCCAGAGAG...TGGCAAGGTCATGTGCCTTCTCTGATGCCAAAACCCTTTATGGGGGTGATGGAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102574.10
CDS-3UTR CCA 90 bp CCCCATAAAGGGTTTTGGCATCAGAGAAGGCACATGACCTTGCCAGGGCCTGATAAGTCTTTGAATCCCTaGTCCATGTTGGCACTCAGC +
Preference number: 4 (lower is better)
Translates to: PHKGFWHQRRHMTLPGPDKSLNP*SMLALS
Trigger: GCTGAGTGCCAACATGGACCAGGGATTCAAAGACTT...ATCAGGCCCTGGCAAGGTCATGTGCCTTCTCTGATGCCAAAACCCTTTATGGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102574.10
CDS-3UTR CCA 90 bp CCCCATAAAGGGTTTTGGCATCAGAGAAGGCACATGACCTTGCCAGGGCCTGATATGGCGGCTTCTATCTaGAAGTCTTTGAATCCCTGG +
Preference number: 4 (lower is better)
Translates to: PHKGFWHQRRHMTLPGPDMAASI*KSLNPW
Trigger: CCAGGGATTCAAAGACTTCCAGATAGAAGCCGCCAT...ATCAGGCCCTGGCAAGGTCATGTGCCTTCTCTGATGCCAAAACCCTTTATGGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102574.10
CDS-3UTR CCA 90 bp GTACTCCATCACCCCCATAAAGGGTTTTGGCATCAGAGAAGGCACATGACCTTGCGATTCTGCCCTGGCTaGTTTTTCTCTGGTGGAAGC +
Preference number: 4 (lower is better)
Translates to: VLHHPHKGFWHQRRHMTLRFCPG*FFSGGS
Trigger: GCTTCCACCAGAGAAAAACCAGCCAGGGCAGAATCG...CAAGGTCATGTGCCTTCTCTGATGCCAAAACCCTTTATGGGGGTGATGGAGTAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000102574.10
CDS-3UTR CCA 90 bp CATAAAGGGTTTTGGCATCAGAGAAGGCACATGACCTTGCCAGGGCCTGATTGGACTTCGATTCTGCCCTaGCTGGTTTTTCTCTGGTGG +
Preference number: 4 (lower is better)
Translates to: HKGFWHQRRHMTLPGPDWTSILP*LVFLWW
Trigger: CCACCAGAGAAAAACCAGCCAGGGCAGAATCGAAGT...CCAATCAGGCCCTGGCAAGGTCATGTGCCTTCTCTGATGCCAAAACCCTTTATG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102574.10
CDS-3UTR TCA 90 bp GTACTCCATCACCCCCATAAAGGGTTTTGGCATCAGAGAAGGCACATGACCTTGCCACTACAAAAGCTGTaGTCTTCTCTTTCACGGCCC +
Preference number: 4 (lower is better)
Translates to: VLHHPHKGFWHQRRHMTLPLQKL*SSLSRP
Trigger: GGGCCGTGAAAGAGAAGATCACAGCTTTTGTAGTGG...CAAGGTCATGTGCCTTCTCTGATGCCAAAACCCTTTATGGGGGTGATGGAGTAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000102574.10
CDS-3UTR GCA 90 bp GTACTCCATCACCCCCATAAAGGGTTTTGGCATCAGAGAAGGCACATGACCTTGCAAAGCCTGCCCAGATaGCACTCTGGGAAGGTATTT +
Preference number: 4 (lower is better)
Translates to: VLHHPHKGFWHQRRHMTLQSLPR*HSGKVF
Trigger: AAATACCTTCCCAGAGTGGCATCTGGGCAGGCTTTG...CAAGGTCATGTGCCTTCTCTGATGCCAAAACCCTTTATGGGGGTGATGGAGTAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102574.10
CDS-3UTR CCA 90 bp CTCCATCACCCCCATAAAGGGTTTTGGCATCAGAGAAGGCACATGACCTTGCCAGCCCAGATGCCACTCTaGGAAGGTATTTTTCTCTCT +
Preference number: 4 (lower is better)
Translates to: LHHPHKGFWHQRRHMTLPAQMPL*EGIFLS
Trigger: AGAGAGAAAAATACCTTCCCAGAGTGGCATCTGGGC...TGGCAAGGTCATGTGCCTTCTCTGATGCCAAAACCCTTTATGGGGGTGATGGAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000102574.10
CDS-3UTR CCA 90 bp CATCACCCCCATAAAGGGTTTTGGCATCAGAGAAGGCACATGACCTTGCCAGGGGGCTGCATCTTTAATTaGCGTCTTGGCAAAGACAGT +
Preference number: 4 (lower is better)
Translates to: HHPHKGFWHQRRHMTLPGGCIFN*RLGKDS
Trigger: ACTGTCTTTGCCAAGACGCCAATTAAAGATGCAGCC...CCCTGGCAAGGTCATGTGCCTTCTCTGATGCCAAAACCCTTTATGGGGGTGATG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000102574.10
CDS-3UTR CCA 90 bp CATAAAGGGTTTTGGCATCAGAGAAGGCACATGACCTTGCCAGGGCCTGATTGGTGGCTGGTTTTTCTCTaGTGGAAGCATCAGAGGAGA +
Preference number: 4 (lower is better)
Translates to: HKGFWHQRRHMTLPGPDWWLVFL*WKHQRR
Trigger: TCTCCTCTGATGCTTCCACCAGAGAAAAACCAGCCA...CCAATCAGGCCCTGGCAAGGTCATGTGCCTTCTCTGATGCCAAAACCCTTTATG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102574.10
CDS-3UTR TCA 90 bp CTCCATCACCCCCATAAAGGGTTTTGGCATCAGAGAAGGCACATGACCTTGCCAAGCAAAAGATTTTGCTaGTGGCGGCTTCTATCTGGA +
Preference number: 4 (lower is better)
Translates to: LHHPHKGFWHQRRHMTLPSKRFC*WRLLSG
Trigger: TCCAGATAGAAGCCGCCATCAGCAAAATCTTTTGCT...TGGCAAGGTCATGTGCCTTCTCTGATGCCAAAACCCTTTATGGGGGTGATGGAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000102574.10
CDS-3UTR TCA 90 bp GTACTCCATCACCCCCATAAAGGGTTTTGGCATCAGAGAAGGCACATGACCTTGGCAGGAACTGCTCGTTaGCAATCCCTTTCTTGTGTT +
Preference number: 4 (lower is better)
Translates to: VLHHPHKGFWHQRRHMTLAGTAR*QSLSCV
Trigger: AACACAAGAAAGGGATTGTCAACGAGCAGTTCCTGC...CAAGGTCATGTGCCTTCTCTGATGCCAAAACCCTTTATGGGGGTGATGGAGTAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102574.10
CDS-3UTR CCA 90 bp GTACTCCATCACCCCCATAAAGGGTTTTGGCATCAGAGAAGGCACATGACCTTGTTCACTGAGCACAGATaGGTATGGGAACACCTGATC +
Preference number: 4 (lower is better)
Translates to: VLHHPHKGFWHQRRHMTLFTEHR*VWEHLI
Trigger: GATCAGGTGTTCCCATACCCATCTGTGCTCAGTGAA...CAAGGTCATGTGCCTTCTCTGATGCCAAAACCCTTTATGGGGGTGATGGAGTAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102574.10
CDS-3UTR CCA 90 bp CTCCATCACCCCCATAAAGGGTTTTGGCATCAGAGAAGGCACATGACCTTGCCATCAGCATGTAAGCCATaGACTCAGTCACATACTGCA +
Preference number: 4 (lower is better)
Translates to: LHHPHKGFWHQRRHMTLPSACKP*TQSHTA
Trigger: TGCAGTATGTGACTGAGTCCATGGCTTACATGCTGA...TGGCAAGGTCATGTGCCTTCTCTGATGCCAAAACCCTTTATGGGGGTGATGGAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102574.10
CDS-3UTR GCA 90 bp CATAAAGGGTTTTGGCATCAGAGAAGGCACATGACCTTGCCAGGGCCTGATTGGCTCTTTGAGAAATTGTaGCTGTTCTTCACTGAGCAC +
Preference number: 4 (lower is better)
Translates to: HKGFWHQRRHMTLPGPDWLFEKL*LFFTEH
Trigger: GTGCTCAGTGAAGAACAGGCACAATTTCTCAAAGAG...CCAATCAGGCCCTGGCAAGGTCATGTGCCTTCTCTGATGCCAAAACCCTTTATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102574.10
CDS-3UTR GCA 90 bp CTCCATCACCCCCATAAAGGGTTTTGGCATCAGAGAAGGCACATGACCTTGCCATCGAAGAATGTCATTTaGCCCTTCAAAGATCCGGAA +
Preference number: 4 (lower is better)
Translates to: LHHPHKGFWHQRRHMTLPSKNVI*PFKDPE
Trigger: TTCCGGATCTTTGAAGGGGCAAATGACATTCTTCGA...TGGCAAGGTCATGTGCCTTCTCTGATGCCAAAACCCTTTATGGGGGTGATGGAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102574.10
CDS-3UTR GCA 90 bp GTACTCCATCACCCCCATAAAGGGTTTTGGCATCAGAGAAGGCACATGACCTTGAAAGGACTTCGATTCTaGCCTGGCTGGTTTTTCTCT +
Preference number: 4 (lower is better)
Translates to: VLHHPHKGFWHQRRHMTLKGLRF*PGWFFS
Trigger: AGAGAAAAACCAGCCAGGGCAGAATCGAAGTCCTTT...CAAGGTCATGTGCCTTCTCTGATGCCAAAACCCTTTATGGGGGTGATGGAGTAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000102574.10
CDS-3UTR TCA 90 bp CTCCATCACCCCCATAAAGGGTTTTGGCATCAGAGAAGGCACATGACCTTGCCAAGATCTTGCTCCCATTaGGAGTGTAATATTTTCCAC +
Preference number: 4 (lower is better)
Translates to: LHHPHKGFWHQRRHMTLPRSCSH*ECNIFH
Trigger: GTGGAAAATATTACACTCTCAATGGGAGCAAGATCT...TGGCAAGGTCATGTGCCTTCTCTGATGCCAAAACCCTTTATGGGGGTGATGGAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000102574.10
CDS GCA 90 bp AGAGAGGCCCAAACCACCCAGCTCGCTGGGTACTTGCAGGCCAAATaGCCCCAGTTCCTTGAGTCCCTGCAAAGTGTCGTCCTCCACCTT +
Preference number: 5 (lower is better)
Translates to: REAQTTQLAGYLQAK*PQFLESLQSVVLHL
Trigger: AAGGTGGAGGACGACACTTTGCAGGGACTCAAGGAACTGGGGGCATTTGGCCTGCAAGTACCCAGCGAGCTGGGTGGTTTGGGCCTCTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018718.8
ENSMUST00000102574.10
CDS GCA 90 bp TCGCTGGGTACTTGCAGGCCAAATGCCCCCAGTTCCTTGAGTCCCTaGAAAGTGTCGTCCTCCACCTTCTCCAAGGCGTCGTTCTTGGCA +
Preference number: 5 (lower is better)
Translates to: SLGTCRPNAPSSLSP*KVSSSTFSKASFLA
Trigger: TGCCAAGAACGACGCCTTGGAGAAGGTGGAGGACGACACTTTGCAGGGACTCAAGGAACTGGGGGCATTTGGCCTGCAAGTACCCAGCGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000018718.8
ENSMUST00000102574.10
CDS GCA 90 bp TACTGGGTATTAGAGAGGCCCAAACCACCCAGCTCGCTGGGTACTTaGAGGCCAAATGCCCCCAGTTCCTTGAGTCCCTGCAAAGTGTCG +
Preference number: 5 (lower is better)
Translates to: YWVLERPKPPSSLGT*RPNAPSSLSPCKVS
Trigger: CGACACTTTGCAGGGACTCAAGGAACTGGGGGCATTTGGCCTGCAAGTACCCAGCGAGCTGGGTGGTTTGGGCCTCTCTAATACCCAGTA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000018718.8
ENSMUST00000102574.10
CDS GCA 90 bp TCTGGTGGAAGCATCAGAGGAGAGGGTTTCTGGCTTGTCCAGAACTaGCTGAGTGGCCTCCCTGGCATAAAGTCGCTGGGCAGAGATAGG +
Preference number: 5 (lower is better)
Translates to: SGGSIRGEGFWLVQN*LSGLPGIKSLGRDR
Trigger: CCTATCTCTGCCCAGCGACTTTATGCCAGGGAGGCCACTCAGGCAGTTCTGGACAAGCCAGAAACCCTCTCCTCTGATGCTTCCACCAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102574.10
CDS-3UTR CAA 90 bp CATCACCCCCATAAAGGGTTTTGGCATCAGAGAAGGCACATGACCTTGCCAGGGCTCCGTCTCAGCTGTTaGCCTGCTTCTCCCATCAGG +
Preference number: 5 (lower is better)
Translates to: HHPHKGFWHQRRHMTLPGLRLSC*PASPIR
Trigger: CCTGATGGGAGAAGCAGGCAAACAGCTGAGACGGAG...CCCTGGCAAGGTCATGTGCCTTCTCTGATGCCAAAACCCTTTATGGGGGTGATG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102574.10
CDS TCA 90 bp GCTCCCATTGAGAGTGTAATATTTTCCACAGGGGCTGGGTATGGCTaGGCTTCGGATGGAGGCTACATCGGATCCACTCGAGGGCTCTGT +
Preference number: 5 (lower is better)
Translates to: APIESVIFSTGAGYG*ASDGGYIGSTRGLC
Trigger: ACAGAGCCCTCGAGTGGATCCGATGTAGCCTCCATCCGAAGCTCAGCCATACCCAGCCCCTGTGGAAAATATTACACTCTCAATGGGAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000018718.8
ENSMUST00000102574.10
CDS GCA 90 bp TCCCAGGGTAACGCTAACACCAAGGTCATGCATGCCCACAATCTCTaGCAAGCGAGCATACTGGGTATTAGAGAGGCCCAAACCACCCAG +
Preference number: 5 (lower is better)
Translates to: SQGNANTKVMHAHNL*QASILGIREAQTTQ
Trigger: CTGGGTGGTTTGGGCCTCTCTAATACCCAGTATGCTCGCTTGGCAGAGATTGTGGGCATGCATGACCTTGGTGTTAGCGTTACCCTGGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018718.8
ENSMUST00000102574.10
CDS GCA 90 bp TGCGACTTAACTCTGGGTGGACAATCCCTGACAGACTCAAACCACTaGCGATTCCTGTCCTCCGTCTCAGCTGTTTGCCTGCTTCTCCCA +
Preference number: 5 (lower is better)
Translates to: CDLTLGGQSLTDSNH*RFLSSVSAVCLLLP
Trigger: TGGGAGAAGCAGGCAAACAGCTGAGACGGAGGACAGGAATCGGCAGTGGTTTGAGTCTGTCAGGGATTGTCCACCCAGAGTTAAGTCGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018718.8
ENSMUST00000102574.10
CDS-3UTR CAA 90 bp CATCACCCCCATAAAGGGTTTTGGCATCAGAGAAGGCACATGACCTTGCCAGGGAATGCCCCCAGTTCCTaGAGTCCCTGCAAAGTGTCG +
Preference number: 5 (lower is better)
Translates to: HHPHKGFWHQRRHMTLPGNAPSS*SPCKVS
Trigger: CGACACTTTGCAGGGACTCAAGGAACTGGGGGCATT...CCCTGGCAAGGTCATGTGCCTTCTCTGATGCCAAAACCCTTTATGGGGGTGATG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000102574.10
CDS-3UTR CAA 90 bp CATAAAGGGTTTTGGCATCAGAGAAGGCACATGACCTTGCCAGGGCCTGATTGGGGATTCTTCAGGGCATaGCCCAGCCCAGTGAGTTCC +
Preference number: 5 (lower is better)
Translates to: HKGFWHQRRHMTLPGPDWGFFRA*PSPVSS
Trigger: GGAACTCACTGGGCTGGGCAATGCCCTGAAGAATCC...CCAATCAGGCCCTGGCAAGGTCATGTGCCTTCTCTGATGCCAAAACCCTTTATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102574.10
CDS-3UTR CAA 90 bp CCCCATAAAGGGTTTTGGCATCAGAGAAGGCACATGACCTTGCCAGGGCCTGATTTTCTCGGATCCGAGTaGCAGCCTCAATGCACCAGC +
Preference number: 5 (lower is better)
Translates to: PHKGFWHQRRHMTLPGPDFLGSE*QPQCTS
Trigger: GCTGGTGCATTGAGGCTGCAACTCGGATCCGAGAAA...ATCAGGCCCTGGCAAGGTCATGTGCCTTCTCTGATGCCAAAACCCTTTATGGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000102574.10
CDS TCA 90 bp CCTTTCTTGTGTTTCACCAGCTTGGCCTCCACCACGGTGGCAAATTaGTCCAGAGCCTGCACTGCCAGTTCACCACTGCGACTTAACTCT +
Preference number: 5 (lower is better)
Translates to: PFLCFTSLASTTVAN*SRACTASSPLRLNS
Trigger: AGAGTTAAGTCGCAGTGGTGAACTGGCAGTGCAGGCTCTGGATCAATTTGCCACCGTGGTGGAGGCCAAGCTGGTGAAACACAAGAAAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018718.8
ENSMUST00000102574.10
CDS GCA 90 bp ATCAACCGCCTTGGCAATGAGGGATTTCATGGTGCCTGCGAGGGTTaGAGCCATCCCGAATCTTCCGTTGTTGAGGATGTTGACAGCAAC +
Preference number: 5 (lower is better)
Translates to: INRLGNEGFHGACEG*SHPESSVVEDVDSN
Trigger: GTTGCTGTCAACATCCTCAACAACGGAAGATTCGGGATGGCTGCAACCCTCGCAGGCACCATGAAATCCCTCATTGCCAAGGCGGTTGAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018718.8
ENSMUST00000102574.10
CDS GCA 90 bp CTGAGGGCTGGACTGCAGACTGGCCATGTTTTCTCGGATCCGAGTTaGAGCCTCAATGCACCAGCTATCACAGAGCATTTTCTCATGCTG +
Preference number: 5 (lower is better)
Translates to: LRAGLQTGHVFSDPS*SLNAPAITEHFLML
Trigger: CAGCATGAGAAAATGCTCTGTGATAGCTGGTGCATTGAGGCTGCAACTCGGATCCGAGAAAACATGGCCAGTCTGCAGTCCAGCCCTCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000018718.8
ENSMUST00000102574.10
CDS CCA 90 bp GAGTGTAATATTTTCCACAGGGGCTGGGTATGGCTGAGCTTCGGATaGAGGCTACATCGGATCCACTCGAGGGCTCTGTTAGGCAGAAAG +
Preference number: 5 (lower is better)
Translates to: ECNIFHRGWVWLSFG*RLHRIHSRALLGRK
Trigger: CTTTCTGCCTAACAGAGCCCTCGAGTGGATCCGATGTAGCCTCCATCCGAAGCTCAGCCATACCCAGCCCCTGTGGAAAATATTACACTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000018718.8
ENSMUST00000102574.10
CDS CCA 90 bp TCCCCACAGCAAAGGACTTCGATTCTGCCCTGGCTGGTTTTTCTCTaGTGGAAGCATCAGAGGAGAGGGTTTCTGGCTTGTCCAGAACTG +
Preference number: 5 (lower is better)
Translates to: SPQQRTSILPWLVFL*WKHQRRGFLACPEL
Trigger: CAGTTCTGGACAAGCCAGAAACCCTCTCCTCTGATGCTTCCACCAGAGAAAAACCAGCCAGGGCAGAATCGAAGTCCTTTGCTGTGGGGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102574.10
CDS-3UTR CAA 90 bp GTACTCCATCACCCCCATAAAGGGTTTTGGCATCAGAGAAGGCACATGACCTTGTTGTGTTTCACCAGCTaGGCCTCCACCACGGTGGCA +
Preference number: 5 (lower is better)
Translates to: VLHHPHKGFWHQRRHMTLLCFTS*ASTTVA
Trigger: TGCCACCGTGGTGGAGGCCAAGCTGGTGAAACACAA...CAAGGTCATGTGCCTTCTCTGATGCCAAAACCCTTTATGGGGGTGATGGAGTAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102574.10
CDS-3UTR CAA 90 bp GTACTCCATCACCCCCATAAAGGGTTTTGGCATCAGAGAAGGCACATGACCTTGCCTCACTCAGGGACCTaGAGGCTCTGGACAGAACCA +
Preference number: 5 (lower is better)
Translates to: VLHHPHKGFWHQRRHMTLPHSGT*RLWTEP
Trigger: TGGTTCTGTCCAGAGCCTCAAGGTCCCTGAGTGAGG...CAAGGTCATGTGCCTTCTCTGATGCCAAAACCCTTTATGGGGGTGATGGAGTAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102574.10
CDS GCA 90 bp CTCAAAGAACCGGGCCACTGGTCCCACCAGCTCTTTGAGAAATTGTaGCTGTTCTTCACTGAGCACAGATGGGTATGGGAACACCTGATC +
Preference number: 5 (lower is better)
Translates to: LKEPGHWSHQLFEKL*LFFTEHRWVWEHLI
Trigger: GATCAGGTGTTCCCATACCCATCTGTGCTCAGTGAAGAACAGGCACAATTTCTCAAAGAGCTGGTGGGACCAGTGGCCCGGTTCTTTGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018718.8
ENSMUST00000102574.10
CDS GCA 90 bp AGTAGCATGATCAACCGCCTTGGCAATGAGGGATTTCATGGTGCCTaGGAGGGTTGCAGCCATCCCGAATCTTCCGTTGTTGAGGATGTT +
Preference number: 5 (lower is better)
Translates to: SSMINRLGNEGFHGA*EGCSHPESSVVEDV
Trigger: AACATCCTCAACAACGGAAGATTCGGGATGGCTGCAACCCTCGCAGGCACCATGAAATCCCTCATTGCCAAGGCGGTTGATCATGCTACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018718.8
ENSMUST00000102574.10
CDS GCA 90 bp ACTCAAACCACTGCCGATTCCTGTCCTCCGTCTCAGCTGTTTGCCTaGTTCTCCCATCAGGAGGCCAACGTTTCCAAAAGGATTCTTCAG +
Preference number: 5 (lower is better)
Translates to: TQTTADSCPPSQLFA*FSHQEANVSKRILQ
Trigger: CTGAAGAATCCTTTTGGAAACGTTGGCCTCCTGATGGGAGAAGCAGGCAAACAGCTGAGACGGAGGACAGGAATCGGCAGTGGTTTGAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018718.8
ENSMUST00000102574.10
CDS GCA 90 bp ACAGACTCAAACCACTGCCGATTCCTGTCCTCCGTCTCAGCTGTTTaGCTGCTTCTCCCATCAGGAGGCCAACGTTTCCAAAAGGATTCT +
Preference number: 5 (lower is better)
Translates to: TDSNHCRFLSSVSAV*LLLPSGGQRFQKDS
Trigger: AGAATCCTTTTGGAAACGTTGGCCTCCTGATGGGAGAAGCAGGCAAACAGCTGAGACGGAGGACAGGAATCGGCAGTGGTTTGAGTCTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018718.8
ENSMUST00000102574.10
CDS CCA 90 bp GTCGTTCTTGGCAGGGTCATTCACTTCCTCAAAGAACCGGGCCACTaGTCCCACCAGCTCTTTGAGAAATTGTGCCTGTTCTTCACTGAG +
Preference number: 5 (lower is better)
Translates to: VVLGRVIHFLKEPGH*SHQLFEKLCLFFTE
Trigger: CTCAGTGAAGAACAGGCACAATTTCTCAAAGAGCTGGTGGGACCAGTGGCCCGGTTCTTTGAGGAAGTGAATGACCCTGCCAAGAACGAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018718.8
ENSMUST00000102574.10
CDS-3UTR CAA 90 bp CATCACCCCCATAAAGGGTTTTGGCATCAGAGAAGGCACATGACCTTGCCAGGGTTTCTCTCTGGGCCTTaGTGCCATAGAGCAAGATGC +
Preference number: 5 (lower is better)
Translates to: HHPHKGFWHQRRHMTLPGFLSGP*CHRARC
Trigger: GCATCTTGCTCTATGGCACAAAGGCCCAGAGAGAAA...CCCTGGCAAGGTCATGTGCCTTCTCTGATGCCAAAACCCTTTATGGGGGTGATG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102574.10
CDS-3UTR CAA 90 bp CATAAAGGGTTTTGGCATCAGAGAAGGCACATGACCTTGCCAGGGCCTGATTGGATGGTAAGCTGGCCTTaGAACATCCCCACAGCAAAG +
Preference number: 5 (lower is better)
Translates to: HKGFWHQRRHMTLPGPDWMVSWP*NIPTAK
Trigger: CTTTGCTGTGGGGATGTTCAAAGGCCAGCTTACCAT...CCAATCAGGCCCTGGCAAGGTCATGTGCCTTCTCTGATGCCAAAACCCTTTATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102574.10
CDS-3UTR CAA 90 bp CATAAAGGGTTTTGGCATCAGAGAAGGCACATGACCTTGCCAGGGCCTGATTGGATGTTGACAGCAACCTaGAAGCCATCTCCCACCTCT +
Preference number: 5 (lower is better)
Translates to: HKGFWHQRRHMTLPGPDWMLTAT*KPSPTS
Trigger: AGAGGTGGGAGATGGCTTCAAGGTTGCTGTCAACAT...CCAATCAGGCCCTGGCAAGGTCATGTGCCTTCTCTGATGCCAAAACCCTTTATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102574.10
CDS-3UTR CAA 90 bp CATCACCCCCATAAAGGGTTTTGGCATCAGAGAAGGCACATGACCTTGCCAGGGATCCCGAATCTTCCGTaGTTGAGGATGTTGACAGCA +
Preference number: 5 (lower is better)
Translates to: HHPHKGFWHQRRHMTLPGIPNLP*LRMLTA
Trigger: TGCTGTCAACATCCTCAACAACGGAAGATTCGGGAT...CCCTGGCAAGGTCATGTGCCTTCTCTGATGCCAAAACCCTTTATGGGGGTGATG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102574.10
CDS-3UTR CAA 90 bp CCCCATAAAGGGTTTTGGCATCAGAGAAGGCACATGACCTTGCCAGGGCCTGATGTCGAAGAATGTCATTaGCCCCTTCAAAGATCCGGA +
Preference number: 5 (lower is better)
Translates to: PHKGFWHQRRHMTLPGPDVEECH*PLQRSG
Trigger: TCCGGATCTTTGAAGGGGCAAATGACATTCTTCGAC...ATCAGGCCCTGGCAAGGTCATGTGCCTTCTCTGATGCCAAAACCCTTTATGGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000102574.10
CDS-3UTR CAA 90 bp CATAAAGGGTTTTGGCATCAGAGAAGGCACATGACCTTGCCAGGGCCTGATTGGTTTGTCCATACAGCCTaGCAGAGCCACAAACAGTCG +
Preference number: 5 (lower is better)
Translates to: HKGFWHQRRHMTLPGPDWFVHTA*QSHKQS
Trigger: CGACTGTTTGTGGCTCTGCAAGGCTGTATGGACAAA...CCAATCAGGCCCTGGCAAGGTCATGTGCCTTCTCTGATGCCAAAACCCTTTATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102574.10
CDS-3UTR CAA 90 bp CCCCATAAAGGGTTTTGGCATCAGAGAAGGCACATGACCTTGCCAGGGCCTGATAGCAGGAACTGCTCGTaGACAATCCCTTTCTTGTGT +
Preference number: 5 (lower is better)
Translates to: PHKGFWHQRRHMTLPGPDSRNCS*TIPFLC
Trigger: ACACAAGAAAGGGATTGTCAACGAGCAGTTCCTGCT...ATCAGGCCCTGGCAAGGTCATGTGCCTTCTCTGATGCCAAAACCCTTTATGGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102574.10
CDS-3UTR CAA 90 bp CATCACCCCCATAAAGGGTTTTGGCATCAGAGAAGGCACATGACCTTGCCAGGGCAGCTCTTTGAGAAATaGTGCCTGTTCTTCACTGAG +
Preference number: 5 (lower is better)
Translates to: HHPHKGFWHQRRHMTLPGQLFEK*CLFFTE
Trigger: CTCAGTGAAGAACAGGCACAATTTCTCAAAGAGCTG...CCCTGGCAAGGTCATGTGCCTTCTCTGATGCCAAAACCCTTTATGGGGGTGATG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102574.10
CDS-3UTR CAA 90 bp GTACTCCATCACCCCCATAAAGGGTTTTGGCATCAGAGAAGGCACATGACCTTGGGTCCCACCAGCTCTTaGAGAAATTGTGCCTGTTCT +
Preference number: 5 (lower is better)
Translates to: VLHHPHKGFWHQRRHMTLGPTSS*RNCACS
Trigger: AGAACAGGCACAATTTCTCAAAGAGCTGGTGGGACC...CAAGGTCATGTGCCTTCTCTGATGCCAAAACCCTTTATGGGGGTGATGGAGTAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102574.10
CDS-3UTR CAA 90 bp GTACTCCATCACCCCCATAAAGGGTTTTGGCATCAGAGAAGGCACATGACCTTGCCGTTGTTGAGGATGTaGACAGCAACCTTGAAGCCA +
Preference number: 5 (lower is better)
Translates to: VLHHPHKGFWHQRRHMTLPLLRM*TATLKP
Trigger: TGGCTTCAAGGTTGCTGTCAACATCCTCAACAACGG...CAAGGTCATGTGCCTTCTCTGATGCCAAAACCCTTTATGGGGGTGATGGAGTAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102574.10
CDS-3UTR CAA 90 bp CATAAAGGGTTTTGGCATCAGAGAAGGCACATGACCTTGCCAGGGCCTGATTGGTCCGAGCAAAAGATTTaGCTGATGGCGGCTTCTATC +
Preference number: 5 (lower is better)
Translates to: HKGFWHQRRHMTLPGPDWSEQKI*LMAASI
Trigger: GATAGAAGCCGCCATCAGCAAAATCTTTTGCTCGGA...CCAATCAGGCCCTGGCAAGGTCATGTGCCTTCTCTGATGCCAAAACCCTTTATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102574.10
CDS-3UTR CAA 90 bp CATAAAGGGTTTTGGCATCAGAGAAGGCACATGACCTTGCCAGGGCCTGATTGGGTGAGTTCCTTTCCTTaGTCCATACAGCCTTGCAGA +
Preference number: 5 (lower is better)
Translates to: HKGFWHQRRHMTLPGPDWVSSFP*SIQPCR
Trigger: TCTGCAAGGCTGTATGGACAAAGGAAAGGAACTCAC...CCAATCAGGCCCTGGCAAGGTCATGTGCCTTCTCTGATGCCAAAACCCTTTATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102574.10
CDS-3UTR CAA 90 bp CATCACCCCCATAAAGGGTTTTGGCATCAGAGAAGGCACATGACCTTGCCAGGGGACGTGTTAGATGCTTaGATGCCCATCTTCTTTTCA +
Preference number: 5 (lower is better)
Translates to: HHPHKGFWHQRRHMTLPGDVLDA*MPIFFS
Trigger: TGAAAAGAAGATGGGCATCAAAGCATCTAACACGTC...CCCTGGCAAGGTCATGTGCCTTCTCTGATGCCAAAACCCTTTATGGGGGTGATG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000102574.10
CDS-3UTR CAA 90 bp CATCACCCCCATAAAGGGTTTTGGCATCAGAGAAGGCACATGACCTTGCCAGGGTCTTTAATTGGCGTCTaGGCAAAGACAGTGAAAATG +
Preference number: 5 (lower is better)
Translates to: HHPHKGFWHQRRHMTLPGSLIGV*AKTVKM
Trigger: CATTTTCACTGTCTTTGCCAAGACGCCAATTAAAGA...CCCTGGCAAGGTCATGTGCCTTCTCTGATGCCAAAACCCTTTATGGGGGTGATG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000102574.10
CDS CAA 90 bp CCACCCAGCTCGCTGGGTACTTGCAGGCCAAATGCCCCCAGTTCCTaGAGTCCCTGCAAAGTGTCGTCCTCCACCTTCTCCAAGGCGTCG +
Preference number: 6 (lower is better)
Translates to: PPSSLGTCRPNAPSS*SPCKVSSSTFSKAS
Trigger: CGACGCCTTGGAGAAGGTGGAGGACGACACTTTGCAGGGACTCAAGGAACTGGGGGCATTTGGCCTGCAAGTACCCAGCGAGCTGGGTGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000018718.8
ENSMUST00000102574.10
CDS CCA 72 bp TCAGGGACCTTGAGGCTCTGGACAGAACCACCACCATaGCATAGAGGTCAATGGCGCCGTCCGCCAGTCGCT +
Preference number: 6 (lower is better)
Translates to: SGTLRLWTEPPP*HRGQWRRPPVA
Trigger: AGCGACTGGCGGACGGCGCCATTGACCTCTATGCCATGGTGGTGGTTCTGTCCAGAGCCTCAAGGTCCCTGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018718.8
ENSMUST00000102574.10
CDS GCA 72 bp TTAGAGAGGCCCAAACCACCCAGCTCGCTGGGTACTTaGAGGCCAAATGCCCCCAGTTCCTTGAGTCCCTGC +
Preference number: 6 (lower is better)
Translates to: LERPKPPSSLGT*RPNAPSSLSPC
Trigger: GCAGGGACTCAAGGAACTGGGGGCATTTGGCCTGCAAGTACCCAGCGAGCTGGGTGGTTTGGGCCTCTCTAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000018718.8
ENSMUST00000102574.10
CDS TCA 72 bp CGCTGGGTACTTGCAGGCCAAATGCCCCCAGTTCCTTaGGTCCCTGCAAAGTGTCGTCCTCCACCTTCTCCA +
Preference number: 6 (lower is better)
Translates to: RWVLAGQMPPVP*VPAKCRPPPSP
Trigger: TGGAGAAGGTGGAGGACGACACTTTGCAGGGACTCAAGGAACTGGGGGCATTTGGCCTGCAAGTACCCAGCG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000018718.8
ENSMUST00000102574.10
CDS TCA 72 bp GGCCACCATTCTCCACCATGGCCTTGGAGATGCTTCTaGAGTTCCGGAAGAGCTCCTGATGCTGAGGGCTGG +
Preference number: 6 (lower is better)
Translates to: GHHSPPWPWRCF*SSGRAPDAEGW
Trigger: CCAGCCCTCAGCATCAGGAGCTCTTCCGGAACTTCAGAAGCATCTCCAAGGCCATGGTGGAGAATGGTGGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018718.8
ENSMUST00000102574.10
CDS GCA 72 bp ACTTGCAGGCCAAATGCCCCCAGTTCCTTGAGTCCCTaGAAAGTGTCGTCCTCCACCTTCTCCAAGGCGTCG +
Preference number: 6 (lower is better)
Translates to: TCRPNAPSSLSP*KVSSSTFSKAS
Trigger: CGACGCCTTGGAGAAGGTGGAGGACGACACTTTGCAGGGACTCAAGGAACTGGGGGCATTTGGCCTGCAAGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000018718.8
ENSMUST00000102574.10
CDS GCA 72 bp CAAACCACCCAGCTCGCTGGGTACTTGCAGGCCAAATaGCCCCAGTTCCTTGAGTCCCTGCAAAGTGTCGTC +
Preference number: 6 (lower is better)
Translates to: QTTQLAGYLQAK*PQFLESLQSVV
Trigger: GACGACACTTTGCAGGGACTCAAGGAACTGGGGGCATTTGGCCTGCAAGTACCCAGCGAGCTGGGTGGTTTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018718.8
ENSMUST00000102574.10
CDS GCA 72 bp AGCATCAGAGGAGAGGGTTTCTGGCTTGTCCAGAACTaGCTGAGTGGCCTCCCTGGCATAAAGTCGCTGGGC +
Preference number: 6 (lower is better)
Translates to: SIRGEGFWLVQN*LSGLPGIKSLG
Trigger: GCCCAGCGACTTTATGCCAGGGAGGCCACTCAGGCAGTTCTGGACAAGCCAGAAACCCTCTCCTCTGATGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102574.10
CDS CAA 72 bp TCGCTGGGTACTTGCAGGCCAAATGCCCCCAGTTCCTaGAGTCCCTGCAAAGTGTCGTCCTCCACCTTCTCC +
Preference number: 6 (lower is better)
Translates to: SLGTCRPNAPSS*SPCKVSSSTFS
Trigger: GGAGAAGGTGGAGGACGACACTTTGCAGGGACTCAAGGAACTGGGGGCATTTGGCCTGCAAGTACCCAGCGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000018718.8
ENSMUST00000102574.10
CDS CAA 72 bp ATTAGAGAGGCCCAAACCACCCAGCTCGCTGGGTACTaGCAGGCCAAATGCCCCCAGTTCCTTGAGTCCCTG +
Preference number: 6 (lower is better)
Translates to: IREAQTTQLAGY*QAKCPQFLESL
Trigger: CAGGGACTCAAGGAACTGGGGGCATTTGGCCTGCAAGTACCCAGCGAGCTGGGTGGTTTGGGCCTCTCTAAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000018718.8
ENSMUST00000102574.10
CDS CAA 72 bp GTGTTTCACCAGCTTGGCCTCCACCACGGTGGCAAATaGATCCAGAGCCTGCACTGCCAGTTCACCACTGCG +
Preference number: 6 (lower is better)
Translates to: VFHQLGLHHGGK*IQSLHCQFTTA
Trigger: CGCAGTGGTGAACTGGCAGTGCAGGCTCTGGATCAATTTGCCACCGTGGTGGAGGCCAAGCTGGTGAAACAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018718.8
ENSMUST00000102574.10
CDS TCA 72 bp TGTTTCACCAGCTTGGCCTCCACCACGGTGGCAAATTaGTCCAGAGCCTGCACTGCCAGTTCACCACTGCGA +
Preference number: 6 (lower is better)
Translates to: CFTSLASTTVAN*SRACTASSPLR
Trigger: TCGCAGTGGTGAACTGGCAGTGCAGGCTCTGGATCAATTTGCCACCGTGGTGGAGGCCAAGCTGGTGAAACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018718.8
ENSMUST00000102574.10
CDS CAA 90 bp ATACTGGGTATTAGAGAGGCCCAAACCACCCAGCTCGCTGGGTACTaGCAGGCCAAATGCCCCCAGTTCCTTGAGTCCCTGCAAAGTGTC +
Preference number: 6 (lower is better)
Translates to: ILGIREAQTTQLAGY*QAKCPQFLESLQSV
Trigger: GACACTTTGCAGGGACTCAAGGAACTGGGGGCATTTGGCCTGCAAGTACCCAGCGAGCTGGGTGGTTTGGGCCTCTCTAATACCCAGTAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000018718.8
ENSMUST00000102574.10
CDS GCA 72 bp ACTGCCGATTCCTGTCCTCCGTCTCAGCTGTTTGCCTaGTTCTCCCATCAGGAGGCCAACGTTTCCAAAAGG +
Preference number: 6 (lower is better)
Translates to: TADSCPPSQLFA*FSHQEANVSKR
Trigger: CCTTTTGGAAACGTTGGCCTCCTGATGGGAGAAGCAGGCAAACAGCTGAGACGGAGGACAGGAATCGGCAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018718.8
ENSMUST00000102574.10
CDS GCA 72 bp AACCACTGCCGATTCCTGTCCTCCGTCTCAGCTGTTTaGCTGCTTCTCCCATCAGGAGGCCAACGTTTCCAA +
Preference number: 6 (lower is better)
Translates to: NHCRFLSSVSAV*LLLPSGGQRFQ
Trigger: TTGGAAACGTTGGCCTCCTGATGGGAGAAGCAGGCAAACAGCTGAGACGGAGGACAGGAATCGGCAGTGGTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018718.8
ENSMUST00000102574.10
CDS CCA 72 bp AAGTGTCGTCCTCCACCTTCTCCAAGGCGTCGTTCTTaGCAGGGTCATTCACTTCCTCAAAGAACCGGGCCA +
Preference number: 6 (lower is better)
Translates to: KCRPPPSPRRRS*QGHSLPQRTGP
Trigger: TGGCCCGGTTCTTTGAGGAAGTGAATGACCCTGCCAAGAACGACGCCTTGGAGAAGGTGGAGGACGACACTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018718.8
ENSMUST00000102574.10
CDS CCA 72 bp TCATGCATGCCCACAATCTCTGCCAAGCGAGCATACTaGGTATTAGAGAGGCCCAAACCACCCAGCTCGCTG +
Preference number: 6 (lower is better)
Translates to: SCMPTISAKRAY*VLERPKPPSSL
Trigger: CAGCGAGCTGGGTGGTTTGGGCCTCTCTAATACCCAGTATGCTCGCTTGGCAGAGATTGTGGGCATGCATGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018718.8
ENSMUST00000102574.10
CDS CAA 72 bp AAAGTGTCGTCCTCCACCTTCTCCAAGGCGTCGTTCTaGGCAGGGTCATTCACTTCCTCAAAGAACCGGGCC +
Preference number: 6 (lower is better)
Translates to: KVSSSTFSKASF*AGSFTSSKNRA
Trigger: GGCCCGGTTCTTTGAGGAAGTGAATGACCCTGCCAAGAACGACGCCTTGGAGAAGGTGGAGGACGACACTTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018718.8
ENSMUST00000102574.10
CDS CAA 72 bp CCTGCGAGGGTTGCAGCCATCCCGAATCTTCCGTTGTaGAGGATGTTGACAGCAACCTTGAAGCCATCTCCC +
Preference number: 6 (lower is better)
Translates to: PARVAAIPNLPL*RMLTATLKPSP
Trigger: GGGAGATGGCTTCAAGGTTGCTGTCAACATCCTCAACAACGGAAGATTCGGGATGGCTGCAACCCTCGCAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018718.8
ENSMUST00000102574.10
CDS CAA 72 bp AAACCACTGCCGATTCCTGTCCTCCGTCTCAGCTGTTaGCCTGCTTCTCCCATCAGGAGGCCAACGTTTCCA +
Preference number: 6 (lower is better)
Translates to: KPLPIPVLRLSC*PASPIRRPTFP
Trigger: TGGAAACGTTGGCCTCCTGATGGGAGAAGCAGGCAAACAGCTGAGACGGAGGACAGGAATCGGCAGTGGTTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018718.8
ENSMUST00000102574.10
CDS CAA 90 bp CCTGCGAGGGTTGCAGCCATCCCGAATCTTCCGTTGTTGAGGATGTaGACAGCAACCTTGAAGCCATCTCCCACCTCTCCTAGCACATTC +
Preference number: 6 (lower is better)
Translates to: PARVAAIPNLPLLRM*TATLKPSPTSPSTF
Trigger: GAATGTGCTAGGAGAGGTGGGAGATGGCTTCAAGGTTGCTGTCAACATCCTCAACAACGGAAGATTCGGGATGGCTGCAACCCTCGCAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018718.8
ENSMUST00000102574.10
CDS CAA 90 bp TTCATGGTGCCTGCGAGGGTTGCAGCCATCCCGAATCTTCCGTTGTaGAGGATGTTGACAGCAACCTTGAAGCCATCTCCCACCTCTCCT +
Preference number: 6 (lower is better)
Translates to: FMVPARVAAIPNLPL*RMLTATLKPSPTSP
Trigger: AGGAGAGGTGGGAGATGGCTTCAAGGTTGCTGTCAACATCCTCAACAACGGAAGATTCGGGATGGCTGCAACCCTCGCAGGCACCATGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018718.8
ENSMUST00000102574.10
CDS GCA 72 bp CCGGGCCACTGGTCCCACCAGCTCTTTGAGAAATTGTaGCTGTTCTTCACTGAGCACAGATGGGTATGGGAA +
Preference number: 6 (lower is better)
Translates to: PGHWSHQLFEKL*LFFTEHRWVWE
Trigger: TTCCCATACCCATCTGTGCTCAGTGAAGAACAGGCACAATTTCTCAAAGAGCTGGTGGGACCAGTGGCCCGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018718.8
ENSMUST00000102574.10
CDS CCA 72 bp GGCAGGGTCATTCACTTCCTCAAAGAACCGGGCCACTaGTCCCACCAGCTCTTTGAGAAATTGTGCCTGTTC +
Preference number: 6 (lower is better)
Translates to: GRVIHFLKEPGH*SHQLFEKLCLF
Trigger: GAACAGGCACAATTTCTCAAAGAGCTGGTGGGACCAGTGGCCCGGTTCTTTGAGGAAGTGAATGACCCTGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018718.8
ENSMUST00000102574.10
CDS CCA 72 bp CTTTCTTGTGTTTCACCAGCTTGGCCTCCACCACGGTaGCAAATTGATCCAGAGCCTGCACTGCCAGTTCAC +
Preference number: 6 (lower is better)
Translates to: LSCVSPAWPPPR*QIDPEPALPVH
Trigger: GTGAACTGGCAGTGCAGGCTCTGGATCAATTTGCCACCGTGGTGGAGGCCAAGCTGGTGAAACACAAGAAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018718.8
ENSMUST00000102574.10
CDS CCA 72 bp CATCCCCACAGCAAAGGACTTCGATTCTGCCCTGGCTaGTTTTTCTCTGGTGGAAGCATCAGAGGAGAGGGT +
Preference number: 6 (lower is better)
Translates to: HPHSKGLRFCPG*FFSGGSIRGEG
Trigger: ACCCTCTCCTCTGATGCTTCCACCAGAGAAAAACCAGCCAGGGCAGAATCGAAGTCCTTTGCTGTGGGGATG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102574.10
CDS CAA 72 bp GTGCCTGCGAGGGTTGCAGCCATCCCGAATCTTCCGTaGTTGAGGATGTTGACAGCAACCTTGAAGCCATCT +
Preference number: 6 (lower is better)
Translates to: VPARVAAIPNLP*LRMLTATLKPS
Trigger: AGATGGCTTCAAGGTTGCTGTCAACATCCTCAACAACGGAAGATTCGGGATGGCTGCAACCCTCGCAGGCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018718.8
ENSMUST00000102574.10
CDS CAA 90 bp GATTTCATGGTGCCTGCGAGGGTTGCAGCCATCCCGAATCTTCCGTaGTTGAGGATGTTGACAGCAACCTTGAAGCCATCTCCCACCTCT +
Preference number: 6 (lower is better)
Translates to: DFMVPARVAAIPNLP*LRMLTATLKPSPTS
Trigger: AGAGGTGGGAGATGGCTTCAAGGTTGCTGTCAACATCCTCAACAACGGAAGATTCGGGATGGCTGCAACCCTCGCAGGCACCATGAAATC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018718.8
ENSMUST00000102574.10
CDS GCA 72 bp CTTGGCAATGAGGGATTTCATGGTGCCTGCGAGGGTTaGAGCCATCCCGAATCTTCCGTTGTTGAGGATGTT +
Preference number: 6 (lower is better)
Translates to: LGNEGFHGACEG*SHPESSVVEDV
Trigger: AACATCCTCAACAACGGAAGATTCGGGATGGCTGCAACCCTCGCAGGCACCATGAAATCCCTCATTGCCAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018718.8
ENSMUST00000102574.10
CDS CCA 72 bp TGCACTGCCAGTTCACCACTGCGACTTAACTCTGGGTaGACAATCCCTGACAGACTCAAACCACTGCCGATT +
Preference number: 6 (lower is better)
Translates to: CTASSPLRLNSG*TIPDRLKPLPI
Trigger: AATCGGCAGTGGTTTGAGTCTGTCAGGGATTGTCCACCCAGAGTTAAGTCGCAGTGGTGAACTGGCAGTGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018718.8
ENSMUST00000102574.10
CDS CCA 72 bp AGGACTTCGATTCTGCCCTGGCTGGTTTTTCTCTGGTaGAAGCATCAGAGGAGAGGGTTTCTGGCTTGTCCA +
Preference number: 6 (lower is better)
Translates to: RTSILPWLVFLW*KHQRRGFLACP
Trigger: TGGACAAGCCAGAAACCCTCTCCTCTGATGCTTCCACCAGAGAAAAACCAGCCAGGGCAGAATCGAAGTCCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000102574.10
CDS CAA 72 bp GTTGCAGCCATCCCGAATCTTCCGTTGTTGAGGATGTaGACAGCAACCTTGAAGCCATCTCCCACCTCTCCT +
Preference number: 6 (lower is better)
Translates to: VAAIPNLPLLRM*TATLKPSPTSP
Trigger: AGGAGAGGTGGGAGATGGCTTCAAGGTTGCTGTCAACATCCTCAACAACGGAAGATTCGGGATGGCTGCAAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018718.8
ENSMUST00000102574.10
CDS CAA 90 bp GGCACCTTCACTCCATCAAAGTACACCTCTGACGTGTTAGATGCTTaGATGCCCATCTTCTTTTCAGGGAGCCCATGGGTAACCCCTCCG +
Preference number: 6 (lower is better)
Translates to: GTFTPSKYTSDVLDA*MPIFFSGSPWVTPP
Trigger: CGGAGGGGTTACCCATGGGCTCCCTGAAAAGAAGATGGGCATCAAAGCATCTAACACGTCAGAGGTGTACTTTGATGGAGTGAAGGTGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000018718.8
ENSMUST00000102574.10
CDS CAA 90 bp ATGCACTCATCTGCCACTTTCCAGGCCGCCTCCGAGCAAAAGATTTaGCTGATGGCGGCTTCTATCTGGAAGTCTTTGAATCCCTGGTCC +
Preference number: 6 (lower is better)
Translates to: MHSSATFQAASEQKI*LMAASIWKSLNPWS
Trigger: GGACCAGGGATTCAAAGACTTCCAGATAGAAGCCGCCATCAGCAAAATCTTTTGCTCGGAGGCGGCCTGGAAAGTGGCAGATGAGTGCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018718.8
ENSMUST00000102574.10
CDS CAA 90 bp TCTCCCATCAGGAGGCCAACGTTTCCAAAAGGATTCTTCAGGGCATaGCCCAGCCCAGTGAGTTCCTTTCCTTTGTCCATACAGCCTTGC +
Preference number: 6 (lower is better)
Translates to: SPIRRPTFPKGFFRA*PSPVSSFPLSIQPC
Trigger: GCAAGGCTGTATGGACAAAGGAAAGGAACTCACTGGGCTGGGCAATGCCCTGAAGAATCCTTTTGGAAACGTTGGCCTCCTGATGGGAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018718.8
ENSMUST00000102574.10
CDS CAA 90 bp TCATTCACTTCCTCAAAGAACCGGGCCACTGGTCCCACCAGCTCTTaGAGAAATTGTGCCTGTTCTTCACTGAGCACAGATGGGTATGGG +
Preference number: 6 (lower is better)
Translates to: SFTSSKNRATGPTSS*RNCACSSLSTDGYG
Trigger: CCCATACCCATCTGTGCTCAGTGAAGAACAGGCACAATTTCTCAAAGAGCTGGTGGGACCAGTGGCCCGGTTCTTTGAGGAAGTGAATGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018718.8
ENSMUST00000102574.10
CDS GCA 72 bp AACGCTAACACCAAGGTCATGCATGCCCACAATCTCTaGCAAGCGAGCATACTGGGTATTAGAGAGGCCCAA +
Preference number: 6 (lower is better)
Translates to: NANTKVMHAHNL*QASILGIREAQ
Trigger: TTGGGCCTCTCTAATACCCAGTATGCTCGCTTGGCAGAGATTGTGGGCATGCATGACCTTGGTGTTAGCGTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018718.8
ENSMUST00000102574.10
CDS CCA 72 bp CTTCTCTTTCACGGCCCCCGTGGCTGCATCTTTAATTaGCGTCTTGGCAAAGACAGTGAAAATGTCAGCCAG +
Preference number: 6 (lower is better)
Translates to: LLFHGPRGCIFN*RLGKDSENVSQ
Trigger: CTGGCTGACATTTTCACTGTCTTTGCCAAGACGCCAATTAAAGATGCAGCCACGGGGGCCGTGAAAGAGAAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000018718.8
ENSMUST00000102574.10
CDS CCA 72 bp CAAAGGACTTCGATTCTGCCCTGGCTGGTTTTTCTCTaGTGGAAGCATCAGAGGAGAGGGTTTCTGGCTTGT +
Preference number: 6 (lower is better)
Translates to: QRTSILPWLVFL*WKHQRRGFLAC
Trigger: ACAAGCCAGAAACCCTCTCCTCTGATGCTTCCACCAGAGAAAAACCAGCCAGGGCAGAATCGAAGTCCTTTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000102574.10
CDS CAA 72 bp TCCTCAAAGAACCGGGCCACTGGTCCCACCAGCTCTTaGAGAAATTGTGCCTGTTCTTCACTGAGCACAGAT +
Preference number: 6 (lower is better)
Translates to: SSKNRATGPTSS*RNCACSSLSTD
Trigger: ATCTGTGCTCAGTGAAGAACAGGCACAATTTCTCAAAGAGCTGGTGGGACCAGTGGCCCGGTTCTTTGAGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018718.8
ENSMUST00000102574.10
CDS CAA 72 bp TCTGCCACTTTCCAGGCCGCCTCCGAGCAAAAGATTTaGCTGATGGCGGCTTCTATCTGGAAGTCTTTGAAT +
Preference number: 6 (lower is better)
Translates to: SATFQAASEQKI*LMAASIWKSLN
Trigger: ATTCAAAGACTTCCAGATAGAAGCCGCCATCAGCAAAATCTTTTGCTCGGAGGCGGCCTGGAAAGTGGCAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018718.8
ENSMUST00000102574.10
CDS CAA 72 bp AGGAGGCCAACGTTTCCAAAAGGATTCTTCAGGGCATaGCCCAGCCCAGTGAGTTCCTTTCCTTTGTCCATA +
Preference number: 6 (lower is better)
Translates to: RRPTFPKGFFRA*PSPVSSFPLSI
Trigger: TATGGACAAAGGAAAGGAACTCACTGGGCTGGGCAATGCCCTGAAGAATCCTTTTGGAAACGTTGGCCTCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018718.8
ENSMUST00000102574.10
CDS GCA 72 bp AAAAGCTGTGATCTTCTCTTTCACGGCCCCCGTGGCTaGATCTTTAATTGGCGTCTTGGCAAAGACAGTGAA +
Preference number: 6 (lower is better)
Translates to: KSCDLLFHGPRG*IFNWRLGKDSE
Trigger: TTCACTGTCTTTGCCAAGACGCCAATTAAAGATGCAGCCACGGGGGCCGTGAAAGAGAAGATCACAGCTTTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000018718.8
ENSMUST00000102574.10
CDS CCA 72 bp AAATTGTGCCTGTTCTTCACTGAGCACAGATGGGTATaGGAACACCTGATCAATGGTAAGCTGGCCTTTGAA +
Preference number: 6 (lower is better)
Translates to: KLCLFFTEHRWV*EHLINGKLAFE
Trigger: TTCAAAGGCCAGCTTACCATTGATCAGGTGTTCCCATACCCATCTGTGCTCAGTGAAGAACAGGCACAATTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018718.8
ENSMUST00000102574.10