RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ACADL (Mus musculus)

Ensembl gene IDs: ENSMUSG00000026003

Ensembl transcript IDs: ENSMUST00000027153.6

Found 42 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 72 bp AAAGGTTATACCTTTCATGACAAAACTTTAGACTCTTaGGCTCAAAAATTTCTCTCTCCCTGTGTTAATCTT +
Preference number: 3 (lower is better)
Translates to: KGYTFHDKTLDS*AQKFLSPCVNL
Trigger: AAGATTAACACAGGGAGAGAGAAATTTTTGAGCCCAAGAGTCTAAAGTTTTGTCATGAAAGGTATAACCTTT
35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027153.6
CDS CCA 90 bp CGCTTCTGCTCCAGAATGAGAACATCGGGCGGAGGGCAGCGGGCGTaGCGCCGAGCGGGCGCTCAGGACGCGCAGGGAGCGGAGGAGCAG +
Preference number: 5 (lower is better)
Translates to: RFCSRMRTSGGGQRA*RRAGAQDAQGAEEQ
Trigger: CTGCTCCTCCGCTCCCTGCGCGTCCTGAGCGCCCGCTCGGCGCCACGCCCGCTGCCCTCCGCCCGATGTTCTCATTCTGGAGCAGAAGCG
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027153.6
CDS GCA 90 bp GGTACCACCGTAGATCGGCTGCACCCGAGCATCCACGTAAGCTTTTaGAATCGGGTACTCCCACATGTACCCCCAGCCTCCGTGGAGTTG +
Preference number: 5 (lower is better)
Translates to: GTTVDRLHPSIHVSF*NRVLPHVPPASVEL
Trigger: CAACTCCACGGAGGCTGGGGGTACATGTGGGAGTACCCGATTGCAAAAGCTTACGTGGATGCTCGGGTGCAGCCGATCTACGGTGGTACC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027153.6
CDS TCA 90 bp TTGAGAGCAAGTCCCCACCAATGCCGCCATGTTTCTCTGCGATGTTaGTGCCAAGCAAGCCCTGCTTGCCAGCTTTTTCCCAGACCTCTC +
Preference number: 5 (lower is better)
Translates to: LRASPHQCRHVSLRC*CQASPACQLFPRPL
Trigger: GAGAGGTCTGGGAAAAAGCTGGCAAGCAGGGCTTGCTTGGCATCAACATCGCAGAGAAACATGGCGGCATTGGTGGGGACTTGCTCTCAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027153.6
CDS GCA 90 bp TCTGAGTGGAGGCTGAAGCCAGGGCCTGTGCAATTGGAGTACGCTTaGTCTTCCCAAGTAACTGCTGTTGAGAGCAAGTCCCCACCAATG +
Preference number: 5 (lower is better)
Translates to: SEWRLKPGPVQLEYA*SSQVTAVESKSPPM
Trigger: CATTGGTGGGGACTTGCTCTCAACAGCAGTTACTTGGGAAGAGCAAGCGTACTCCAATTGCACAGGCCCTGGCTTCAGCCTCCACTCAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027153.6
CDS GCA 90 bp GCCATGGAAGCAGAACCGGAGTCCAGACGTTTGGTTTCATGCAACTaGAGACAGCTGTCCACAAAAGCTCTGGTGACACATATGTGTGTC +
Preference number: 5 (lower is better)
Translates to: AMEAEPESRRLVSCN*RQLSTKALVTHMCV
Trigger: GACACACATATGTGTCACCAGAGCTTTTGTGGACAGCTGTCTGCAGTTGCATGAAACCAAACGTCTGGACTCCGGTTCTGCTTCCATGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027153.6
CDS CCA 90 bp ATAAATCCTTTCATTCCGTTTTCCACCAAAAAGAGGCTAATGCCATaGGCAGGCGATCGAGCTTCACGGTTGGTGACGGCCACGACGATC +
Preference number: 5 (lower is better)
Translates to: INPFIPFSTKKRLMP*AGDRASRLVTATTI
Trigger: GATCGTCGTGGCCGTCACCAACCGTGAAGCTCGATCGCCTGCCCATGGCATTAGCCTCTTTTTGGTGGAAAACGGAATGAAAGGATTTAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027153.6
CDS TCA 90 bp TCATGGCTATGGCACCGATACACTTGCCCGCCGTCATCTGGGGGATaGACTTCTCGATCTGTTCTTTTGTGCCGTAATTCGCAATATAGG +
Preference number: 5 (lower is better)
Translates to: SWLWHRYTCPPSSGG*TSRSVLLCRNSQYR
Trigger: CCTATATTGCGAATTACGGCACAAAAGAACAGATCGAGAAGTTCATCCCCCAGATGACGGCGGGCAAGTGTATCGGTGCCATAGCCATGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027153.6
CDS GCA 90 bp TATTTTGCCATGGAAGCAGAACCGGAGTCCAGACGTTTGGTTTCATaGAACTGCAGACAGCTGTCCACAAAAGCTCTGGTGACACATATG +
Preference number: 5 (lower is better)
Translates to: YFAMEAEPESRRLVS*NCRQLSTKALVTHM
Trigger: CATATGTGTCACCAGAGCTTTTGTGGACAGCTGTCTGCAGTTGCATGAAACCAAACGTCTGGACTCCGGTTCTGCTTCCATGGCAAAATA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027153.6
CDS TCA 90 bp GTTTGGTTTCATGCAACTGCAGACAGCTGTCCACAAAAGCTCTGGTaGCACATATGTGTGTCTTTAATTCTGCTAGTTTATGCTGCACCG +
Preference number: 5 (lower is better)
Translates to: VWFHATADSCPQKLW*HICVSLILLVYAAP
Trigger: CGGTGCAGCATAAACTAGCAGAATTAAAGACACACATATGTGTCACCAGAGCTTTTGTGGACAGCTGTCTGCAGTTGCATGAAACCAAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027153.6
CDS TCA 90 bp CAAAAGCTTTTCTTTGCTTCACGTAGTTCCTGGTTTCTTCAAACATaGACTCACAGGCAGAAATCGCCAACTCAGCAATTAAGAGCCTTT +
Preference number: 5 (lower is better)
Translates to: QKLFFASRSSWFLQT*THRQKSPTQQLRAF
Trigger: AAAGGCTCTTAATTGCTGAGTTGGCGATTTCTGCCTGTGAGTTCATGTTTGAAGAAACCAGGAACTACGTGAAGCAAAGAAAAGCTTTTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027153.6
CDS CCA 72 bp TCCAGAATGAGAACATCGGGCGGAGGGCAGCGGGCGTaGCGCCGAGCGGGCGCTCAGGACGCGCAGGGAGCG +
Preference number: 6 (lower is better)
Translates to: SRMRTSGGGQRA*RRAGAQDAQGA
Trigger: CGCTCCCTGCGCGTCCTGAGCGCCCGCTCGGCGCCACGCCCGCTGCCCTCCGCCCGATGTTCTCATTCTGGA
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027153.6
CDS TCA 72 bp GCAGAAGGAGTTTCTAGACGCGCTTCTGCTCCAGAATaGGAACATCGGGCGGAGGGCAGCGGGCGTGGCGCC +
Preference number: 6 (lower is better)
Translates to: AEGVSRRASAPE*EHRAEGSGRGA
Trigger: GGCGCCACGCCCGCTGCCCTCCGCCCGATGTTCTCATTCTGGAGCAGAAGCGCGTCTAGAAACTCCTTCTGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027153.6
CDS CAA 72 bp GCCCCAGGCTCTGTCATGGCTATGGCACCGATACACTaGCCCGCCGTCATCTGGGGGATGAACTTCTCGATC +
Preference number: 6 (lower is better)
Translates to: APGSVMAMAPIH*PAVIWGMNFSI
Trigger: GATCGAGAAGTTCATCCCCCAGATGACGGCGGGCAAGTGTATCGGTGCCATAGCCATGACAGAGCCTGGGGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027153.6
CDS CAA 90 bp TGGTACCACCGTAGATCGGCTGCACCCGAGCATCCACGTAAGCTTTaGCAATCGGGTACTCCCACATGTACCCCCAGCCTCCGTGGAGTT +
Preference number: 6 (lower is better)
Translates to: WYHRRSAAPEHPRKL*QSGTPTCTPSLRGV
Trigger: AACTCCACGGAGGCTGGGGGTACATGTGGGAGTACCCGATTGCAAAAGCTTACGTGGATGCTCGGGTGCAGCCGATCTACGGTGGTACCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027153.6
CDS GCA 72 bp GTAGATCGGCTGCACCCGAGCATCCACGTAAGCTTTTaGAATCGGGTACTCCCACATGTACCCCCAGCCTCC +
Preference number: 6 (lower is better)
Translates to: VDRLHPSIHVSF*NRVLPHVPPAS
Trigger: GGAGGCTGGGGGTACATGTGGGAGTACCCGATTGCAAAAGCTTACGTGGATGCTCGGGTGCAGCCGATCTAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027153.6
CDS CAA 72 bp CGTAGATCGGCTGCACCCGAGCATCCACGTAAGCTTTaGCAATCGGGTACTCCCACATGTACCCCCAGCCTC +
Preference number: 6 (lower is better)
Translates to: RRSAAPEHPRKL*QSGTPTCTPSL
Trigger: GAGGCTGGGGGTACATGTGGGAGTACCCGATTGCAAAAGCTTACGTGGATGCTCGGGTGCAGCCGATCTACG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027153.6
CDS CCA 72 bp CTCCTTGTAAGTCACTTCCAGCCCCAGGCTCTGTCATaGCTATGGCACCGATACACTTGCCCGCCGTCATCT +
Preference number: 6 (lower is better)
Translates to: LLVSHFQPQALS*LWHRYTCPPSS
Trigger: AGATGACGGCGGGCAAGTGTATCGGTGCCATAGCCATGACAGAGCCTGGGGCTGGAAGTGACTTACAAGGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027153.6
CDS CAA 72 bp AGGCTAATGCCATGGGCAGGCGATCGAGCTTCACGGTaGGTGACGGCCACGACGATCACGAGATCACTTAAC +
Preference number: 6 (lower is better)
Translates to: RLMPWAGDRASR*VTATTITRSLN
Trigger: GTTAAGTGATCTCGTGATCGTCGTGGCCGTCACCAACCGTGAAGCTCGATCGCCTGCCCATGGCATTAGCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027153.6
CDS TCA 72 bp AGTCCCCACCAATGCCGCCATGTTTCTCTGCGATGTTaGTGCCAAGCAAGCCCTGCTTGCCAGCTTTTTCCC +
Preference number: 6 (lower is better)
Translates to: SPHQCRHVSLRC*CQASPACQLFP
Trigger: GGGAAAAAGCTGGCAAGCAGGGCTTGCTTGGCATCAACATCGCAGAGAAACATGGCGGCATTGGTGGGGACT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027153.6
CDS CAA 90 bp TCACTTCCAGCCCCAGGCTCTGTCATGGCTATGGCACCGATACACTaGCCCGCCGTCATCTGGGGGATGAACTTCTCGATCTGTTCTTTT +
Preference number: 6 (lower is better)
Translates to: SLPAPGSVMAMAPIH*PAVIWGMNFSICSF
Trigger: AAAAGAACAGATCGAGAAGTTCATCCCCCAGATGACGGCGGGCAAGTGTATCGGTGCCATAGCCATGACAGAGCCTGGGGCTGGAAGTGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027153.6
CDS CCA 72 bp TTCATTCCGTTTTCCACCAAAAAGAGGCTAATGCCATaGGCAGGCGATCGAGCTTCACGGTTGGTGACGGCC +
Preference number: 6 (lower is better)
Translates to: FIPFSTKKRLMP*AGDRASRLVTA
Trigger: GGCCGTCACCAACCGTGAAGCTCGATCGCCTGCCCATGGCATTAGCCTCTTTTTGGTGGAAAACGGAATGAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027153.6
CDS CAA 90 bp ACCAAAAAGAGGCTAATGCCATGGGCAGGCGATCGAGCTTCACGGTaGGTGACGGCCACGACGATCACGAGATCACTTAACCAGCCATTA +
Preference number: 6 (lower is better)
Translates to: TKKRLMPWAGDRASR*VTATTITRSLNQPL
Trigger: TAATGGCTGGTTAAGTGATCTCGTGATCGTCGTGGCCGTCACCAACCGTGAAGCTCGATCGCCTGCCCATGGCATTAGCCTCTTTTTGGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027153.6
CDS TCA 72 bp TGGCACCGATACACTTGCCCGCCGTCATCTGGGGGATaGACTTCTCGATCTGTTCTTTTGTGCCGTAATTCG +
Preference number: 6 (lower is better)
Translates to: WHRYTCPPSSGG*TSRSVLLCRNS
Trigger: CGAATTACGGCACAAAAGAACAGATCGAGAAGTTCATCCCCCAGATGACGGCGGGCAAGTGTATCGGTGCCA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027153.6
CDS CAA 90 bp GGCATGACAATATCTGAGTGGAGGCTGAAGCCAGGGCCTGTGCAATaGGAGTACGCTTGCTCTTCCCAAGTAACTGCTGTTGAGAGCAAG +
Preference number: 6 (lower is better)
Translates to: GMTISEWRLKPGPVQ*EYACSSQVTAVESK
Trigger: CTTGCTCTCAACAGCAGTTACTTGGGAAGAGCAAGCGTACTCCAATTGCACAGGCCCTGGCTTCAGCCTCCACTCAGATATTGTCATGCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027153.6
CDS CAA 90 bp GATGCCCAGTATTTTGCCATGGAAGCAGAACCGGAGTCCAGACGTTaGGTTTCATGCAACTGCAGACAGCTGTCCACAAAAGCTCTGGTG +
Preference number: 6 (lower is better)
Translates to: DAQYFAMEAEPESRR*VSCNCRQLSTKALV
Trigger: CACCAGAGCTTTTGTGGACAGCTGTCTGCAGTTGCATGAAACCAAACGTCTGGACTCCGGTTCTGCTTCCATGGCAAAATACTGGGCATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027153.6
CDS TCA 72 bp ATTGGAGTACGCTTGCTCTTCCCAAGTAACTGCTGTTaGGAGCAAGTCCCCACCAATGCCGCCATGTTTCTC +
Preference number: 6 (lower is better)
Translates to: IGVRLLFPSNCC*EQVPTNAAMFL
Trigger: GAGAAACATGGCGGCATTGGTGGGGACTTGCTCTCAACAGCAGTTACTTGGGAAGAGCAAGCGTACTCCAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027153.6
CDS GCA 72 bp GCAGAACCGGAGTCCAGACGTTTGGTTTCATGCAACTaGAGACAGCTGTCCACAAAAGCTCTGGTGACACAT +
Preference number: 6 (lower is better)
Translates to: AEPESRRLVSCN*RQLSTKALVTH
Trigger: ATGTGTCACCAGAGCTTTTGTGGACAGCTGTCTGCAGTTGCATGAAACCAAACGTCTGGACTCCGGTTCTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027153.6
CDS GCA 72 bp ATGGAAGCAGAACCGGAGTCCAGACGTTTGGTTTCATaGAACTGCAGACAGCTGTCCACAAAAGCTCTGGTG +
Preference number: 6 (lower is better)
Translates to: MEAEPESRRLVS*NCRQLSTKALV
Trigger: CACCAGAGCTTTTGTGGACAGCTGTCTGCAGTTGCATGAAACCAAACGTCTGGACTCCGGTTCTGCTTCCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027153.6
CDS CAA 72 bp ATATCTGAGTGGAGGCTGAAGCCAGGGCCTGTGCAATaGGAGTACGCTTGCTCTTCCCAAGTAACTGCTGTT +
Preference number: 6 (lower is better)
Translates to: ISEWRLKPGPVQ*EYACSSQVTAV
Trigger: AACAGCAGTTACTTGGGAAGAGCAAGCGTACTCCAATTGCACAGGCCCTGGCTTCAGCCTCCACTCAGATAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027153.6
CDS CCA 72 bp ATTTTGCCATGGAAGCAGAACCGGAGTCCAGACGTTTaGTTTCATGCAACTGCAGACAGCTGTCCACAAAAG +
Preference number: 6 (lower is better)
Translates to: ILPWKQNRSPDV*FHATADSCPQK
Trigger: CTTTTGTGGACAGCTGTCTGCAGTTGCATGAAACCAAACGTCTGGACTCCGGTTCTGCTTCCATGGCAAAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027153.6
CDS CAA 90 bp ATGAACACCTTGCTTCCATTGAGAATCCAATCACTCCCAGATCTTTaGGCGTTCGTTCTTACTCCTTGTAAGTCACTTCCAGCCCCAGGC +
Preference number: 6 (lower is better)
Translates to: MNTLLPLRIQSLPDL*AFVLTPCKSLPAPG
Trigger: GCCTGGGGCTGGAAGTGACTTACAAGGAGTAAGAACGAACGCCAAAAGATCTGGGAGTGATTGGATTCTCAATGGAAGCAAGGTGTTCAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027153.6
CDS TCA 72 bp AATCGGACATCTTCAAAGAATAGTTCTGCTGTGTCCTaGGCTTTCATTCCCATCTTATGCAGCTTCCGGCCC +
Preference number: 6 (lower is better)
Translates to: NRTSSKNSSAVS*AFIPILCSFRP
Trigger: GGGCCGGAAGCTGCATAAGATGGGAATGAAAGCTCAGGACACAGCAGAACTATTCTTTGAAGATGTCCGATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027153.6
CDS CAA 72 bp TATTTTGCCATGGAAGCAGAACCGGAGTCCAGACGTTaGGTTTCATGCAACTGCAGACAGCTGTCCACAAAA +
Preference number: 6 (lower is better)
Translates to: YFAMEAEPESRR*VSCNCRQLSTK
Trigger: TTTTGTGGACAGCTGTCTGCAGTTGCATGAAACCAAACGTCTGGACTCCGGTTCTGCTTCCATGGCAAAATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027153.6
CDS CAA 72 bp AAGCTACACTGTTTTGTAATTCAGATGCCCAGTATTTaGCCATGGAAGCAGAACCGGAGTCCAGACGTTTGG +
Preference number: 6 (lower is better)
Translates to: KLHCFVIQMPSI*PWKQNRSPDVW
Trigger: CCAAACGTCTGGACTCCGGTTCTGCTTCCATGGCAAAATACTGGGCATCTGAATTACAAAACAGTGTAGCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027153.6
CDS CAA 72 bp CTTAACCAGCCATTAGTGATGAACACCTTGCTTCCATaGAGAATCCAATCACTCCCAGATCTTTTGGCGTTC +
Preference number: 6 (lower is better)
Translates to: LNQPLVMNTLLP*RIQSLPDLLAF
Trigger: GAACGCCAAAAGATCTGGGAGTGATTGGATTCTCAATGGAAGCAAGGTGTTCATCACTAATGGCTGGTTAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027153.6
CDS CAA 90 bp CACATTCATAAGCTACACTGTTTTGTAATTCAGATGCCCAGTATTTaGCCATGGAAGCAGAACCGGAGTCCAGACGTTTGGTTTCATGCA +
Preference number: 6 (lower is better)
Translates to: HIHKLHCFVIQMPSI*PWKQNRSPDVWFHA
Trigger: TGCATGAAACCAAACGTCTGGACTCCGGTTCTGCTTCCATGGCAAAATACTGGGCATCTGAATTACAAAACAGTGTAGCTTATGAATGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027153.6
CDS CAA 72 bp TTTCTCCCATTCTGTGTGGTGAGGAATCACTTCTTCTaGGAAAAACTTCCTTACACTCTCCCGGAAAATGTC +
Preference number: 6 (lower is better)
Translates to: FLPFCVVRNHFF*EKLPYTLPENV
Trigger: GACATTTTCCGGGAGAGTGTAAGGAAGTTTTTCCAAGAAGAAGTGATTCCTCACCACACAGAATGGGAGAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027153.6
CDS CAA 72 bp TTGCTTCCATTGAGAATCCAATCACTCCCAGATCTTTaGGCGTTCGTTCTTACTCCTTGTAAGTCACTTCCA +
Preference number: 6 (lower is better)
Translates to: LLPLRIQSLPDL*AFVLTPCKSLP
Trigger: TGGAAGTGACTTACAAGGAGTAAGAACGAACGCCAAAAGATCTGGGAGTGATTGGATTCTCAATGGAAGCAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027153.6
CDS TCA 72 bp TTCTTTGCTTCACGTAGTTCCTGGTTTCTTCAAACATaGACTCACAGGCAGAAATCGCCAACTCAGCAATTA +
Preference number: 6 (lower is better)
Translates to: FFASRSSWFLQT*THRQKSPTQQL
Trigger: TAATTGCTGAGTTGGCGATTTCTGCCTGTGAGTTCATGTTTGAAGAAACCAGGAACTACGTGAAGCAAAGAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027153.6
CDS TCA 72 bp CATGCAACTGCAGACAGCTGTCCACAAAAGCTCTGGTaGCACATATGTGTGTCTTTAATTCTGCTAGTTTAT +
Preference number: 6 (lower is better)
Translates to: HATADSCPQKLW*HICVSLILLVY
Trigger: ATAAACTAGCAGAATTAAAGACACACATATGTGTCACCAGAGCTTTTGTGGACAGCTGTCTGCAGTTGCATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027153.6
CDS GCA 72 bp GTGACACATATGTGTGTCTTTAATTCTGCTAGTTTATaGTGCACCGTCTGTATGTGTGCAACTGTTTTCCCA +
Preference number: 6 (lower is better)
Translates to: VTHMCVFNSASL*CTVCMCATVFP
Trigger: TGGGAAAACAGTTGCACACATACAGACGGTGCAGCATAAACTAGCAGAATTAAAGACACACATATGTGTCAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027153.6