RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ACAD8 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000031969

Ensembl transcript IDs: ENSMUST00000060513.8, ENSMUST00000120367.8, ENSMUST00000128923.8, ENSMUST00000132293.2, ENSMUST00000215693.2

Found 167 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp AGCTGTGCAGCCTTCCGCATCACATCCACAGGGAACAGCTCCTTCTaGTCCCACTCCGCCATATTGGGAGCCATTTCCCGAGCTGCAAAG +
Preference number: 1 (lower is better)
Translates to: SCAAFRITSTGNSSF*SHSAILGAISRAAK
Trigger: CTTTGCAGCTCGGGAAATGGCTCCCAATATGGCGGAGTGGGATCAGAAGGAGCTGTTCCCTGTGGATGTGATGCGGAAGGCTGCACAGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000128923.8
ENSMUST00000132293.2
3UTR GCA 90 bp GCCACAGCTTTGACCGCTTGTCTTTCCAGAATGAGGAAGGCAGTGTaGAGGTCTTCTTTGGGCATGGCTCCTCAGAGCAGCCCTTCTAGC +
Preference number: 1 (lower is better)
Translates to: ATALTACLSRMRKAV*RSSLGMAPQSSPSS
Trigger: GCTAGAAGGGCTGCTCTGAGGAGCCATGCCCAAAGAAGACCTGCACACTGCCTTCCTCATTCTGGAAAGACAAGCGGTCAAAGCTGTGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
3UTR GCA 90 bp TTGATCCTTCCACCATTCAGTCCTTTCATGGCGATGAGAAAACCCTaGCCCTCGGTCCCAATCCTGTTGGCCACAGGGACAGCACAGTCT +
Preference number: 1 (lower is better)
Translates to: LILPPFSPFMAMRKP*PSVPILLATGTAQS
Trigger: AGACTGTGCTGTCCCTGTGGCCAACAGGATTGGGACCGAGGGGCAGGGTTTTCTCATCGCCATGAAAGGACTGAATGGTGGAAGGATCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215693.2
3UTR TCA 90 bp TTTGGCGCCAGACTCACCAGTTCGGCACATGACCACATAGATGTCTaGCTCACCTCCCCCACTGATGAAGGCCTTGGAACCATTGAGGAT +
Preference number: 1 (lower is better)
Translates to: FGARLTSSAHDHIDV*LTSPTDEGLGTIED
Trigger: ATCCTCAATGGTTCCAAGGCCTTCATCAGTGGGGGAGGTGAGTCAGACATCTATGTGGTCATGTGCCGAACTGGTGAGTCTGGCGCCAAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000128923.8
ENSMUST00000132293.2
ENSMUST00000215693.2
3UTR CCA 90 bp TCACATCCACAGGGAACAGCTCCTTCTGATCCCACTCCGCCATATTaGGAGCCATTTCCCGAGCTGCAAAGTCAAAGGCCACTTTCTGAA +
Preference number: 1 (lower is better)
Translates to: SHPQGTAPSDPTPPY*EPFPELQSQRPLSE
Trigger: TTCAGAAAGTGGCCTTTGACTTTGCAGCTCGGGAAATGGCTCCCAATATGGCGGAGTGGGATCAGAAGGAGCTGTTCCCTGTGGATGTGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000128923.8
ENSMUST00000132293.2
3UTR TCA 90 bp TTGGCTGCGAGTTCCACCCCACCTTCTTCTCCTTCTTGCCAAAGCTaGGACCAGGGGTTCCTTTCTCAACAACTATGCAGGAGATACCTT +
Preference number: 1 (lower is better)
Translates to: LAASSTPPSSPSCQS*DQGFLSQQLCRRYL
Trigger: AAGGTATCTCCTGCATAGTTGTTGAGAAAGGAACCCCTGGTCTCAGCTTTGGCAAGAAGGAGAAGAAGGTGGGGTGGAACTCGCAGCCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000128923.8
ENSMUST00000132293.2
ENSMUST00000215693.2
3UTR TCA 90 bp TTAGAAGAGCTCAGCCCTTTGGTCTACTTCATGATTCACTTGAACTaGGCAGCCCATAGGAGCATCAAGACTGATTCCAGCTGCACACAG +
Preference number: 1 (lower is better)
Translates to: LEELSPLVYFMIHLN*AAHRSIKTDSSCTQ
Trigger: CTGTGTGCAGCTGGAATCAGTCTTGATGCTCCTATGGGCTGCTCAGTTCAAGTGAATCATGAAGTAGACCAAAGGGCTGAGCTCTTCTAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
3UTR TCA 90 bp TCATTGCTTAGCAGTAGGTTCCCAAATATTTATTTCATCATGATCTaGGTACAGGAGTACTGTCCTGACATACCCCTAGTGCAGAACAGA +
Preference number: 1 (lower is better)
Translates to: SLLSSRFPNIYFIMI*VQEYCPDIPLVQNR
Trigger: TCTGTTCTGCACTAGGGGTATGTCAGGACAGTACTCCTGTACTCAGATCATGATGAAATAAATATTTGGGAACCTACTGCTAAGCAATGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
3UTR CAA 90 bp CCTTTCATGGCGATGAGAAAACCCTGCCCCTCGGTCCCAATCCTGTaGGCCACAGGGACAGCACAGTCTTCAAAGATCACTGCTCGGGTT +
Preference number: 2 (lower is better)
Translates to: PFMAMRKPCPSVPIL*ATGTAQSSKITARV
Trigger: AACCCGAGCAGTGATCTTTGAAGACTGTGCTGTCCCTGTGGCCAACAGGATTGGGACCGAGGGGCAGGGTTTTCTCATCGCCATGAAAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000128923.8
ENSMUST00000215693.2
3UTR-3UTR TCA 90 bp CCTGTTGGCCACAGGGACAGCACAGTCTTCAAAGATCACTGCTCGGGTTGGCTGCCTTCTTGCCAAAGCTaGGACCAGGGGTTCCTTTCT +
Preference number: 2 (lower is better)
Translates to: PVGHRDSTVFKDHCSGWLPSCQS*DQGFLS
Trigger: AGAAAGGAACCCCTGGTCTCAGCTTTGGCAAGAAGG...CAGCCAACCCGAGCAGTGATCTTTGAAGACTGTGCTGTCCCTGTGGCCAACAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000128923.8
ENSMUST00000215693.2
3UTR-3UTR GCA 90 bp CCCTGCCCCTCGGTCCCAATCCTGTTGGCCACAGGGACAGCACAGTCTTCAAAGAGCCATTTCCCGAGCTaGAAAGTCAAAGGCCACTTT +
Preference number: 2 (lower is better)
Translates to: PCPSVPILLATGTAQSSKSHFPS*KVKGHF
Trigger: AAAGTGGCCTTTGACTTTGCAGCTCGGGAAATGGCT...CTTTGAAGACTGTGCTGTCCCTGTGGCCAACAGGATTGGGACCGAGGGGCAGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000128923.8
3UTR-3UTR CCA 90 bp CTGAGCCGGGCTGACTCCATGACGAGCTGTAAGATGCCACTGCAGGAGACTATAGGTCTTCTTTGGGCATaGCTCCTCAGAGCAGCCCTT +
Preference number: 2 (lower is better)
Translates to: LSRADSMTSCKMPLQETIGLLWA*LLRAAL
Trigger: AAGGGCTGCTCTGAGGAGCCATGCCCAAAGAAGACC...TATAGTCTCCTGCAGTGGCATCTTACAGCTCGTCATGGAGTCAGCCCGGCTCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
3UTR-3UTR TCA 90 bp AAAACCCTGCCCCTCGGTCCCAATCCTGTTGGCCACAGGGACAGCACAGTCTTCCCAAGGCTTCAAAGATaGCAGAAGTATCAAGGCGAG +
Preference number: 2 (lower is better)
Translates to: KTLPLGPNPVGHRDSTVFPRLQR*QKYQGE
Trigger: CTCGCCTTGATACTTCTGTCATCTTTGAAGCCTTGG...GAAGACTGTGCTGTCCCTGTGGCCAACAGGATTGGGACCGAGGGGCAGGGTTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000128923.8
3UTR-3UTR GCA 90 bp CTGAGCCGGGCTGACTCCATGACGAGCTGTAAGATGCCACTGCAGGAGACTATAAAGACTGATTCCAGCTaGACACAGACTCCAGGCGAG +
Preference number: 2 (lower is better)
Translates to: LSRADSMTSCKMPLQETIKTDSS*TQTPGE
Trigger: CTCGCCTGGAGTCTGTGTGCAGCTGGAATCAGTCTT...TATAGTCTCCTGCAGTGGCATCTTACAGCTCGTCATGGAGTCAGCCCGGCTCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
3UTR-3UTR CCA 90 bp CCAGGGGTTCCTTTCTCAACAACTATGCAGGAGATACCTTTGGCGCCAGACTCATATAGGCAGTGGTGCTaGTGCAGCCTGTGGCCAAGG +
Preference number: 2 (lower is better)
Translates to: PGVPFSTTMQEIPLAPDSYRQWC*CSLWPR
Trigger: CCTTGGCCACAGGCTGCACCAGCACCACTGCCTATA...TGAGTCTGGCGCCAAAGGTATCTCCTGCATAGTTGTTGAGAAAGGAACCCCTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000128923.8
ENSMUST00000132293.2
3UTR CAA 90 bp ACCGCTTGTCTTTCCAGAATGAGGAAGGCAGTGTGCAGGTCTTCTTaGGGCATGGCTCCTCAGAGCAGCCCTTCTAGCTCTGCTAAGAAC +
Preference number: 2 (lower is better)
Translates to: TACLSRMRKAVCRSS*GMAPQSSPSSSAKN
Trigger: GTTCTTAGCAGAGCTAGAAGGGCTGCTCTGAGGAGCCATGCCCAAAGAAGACCTGCACACTGCCTTCCTCATTCTGGAAAGACAAGCGGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
3UTR-3UTR GCA 90 bp AGAAAACCCTGCCCCTCGGTCCCAATCCTGTTGGCCACAGGGACAGCACAGTCTGGTGGGCAAAATTTGTaGCTCTGTTCCTCATTTCCA +
Preference number: 2 (lower is better)
Translates to: RKPCPSVPILLATGTAQSGGQNL*LCSSFP
Trigger: TGGAAATGAGGAACAGAGGCACAAATTTTGCCCACC...AGACTGTGCTGTCCCTGTGGCCAACAGGATTGGGACCGAGGGGCAGGGTTTTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000128923.8
ENSMUST00000215693.2
3UTR-3UTR CCA 90 bp GTCCCAATCCTGTTGGCCACAGGGACAGCACAGTCTTCAAAGATCACTGCTCGGCATGGTACAGAGCGGTaGGCAAAATTTGTGCCTCTG +
Preference number: 2 (lower is better)
Translates to: VPILLATGTAQSSKITARHGTER*AKFVPL
Trigger: CAGAGGCACAAATTTTGCCCACCGCTCTGTACCATG...CCGAGCAGTGATCTTTGAAGACTGTGCTGTCCCTGTGGCCAACAGGATTGGGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000128923.8
ENSMUST00000215693.2
3UTR-3UTR CCA 90 bp CTTCTCCTTCTTGCCAAAGCTGAGACCAGGGGTTCCTTTCTCAACAACTATGCATATAGGCAGTGGTGCTaGTGCAGCCTGTGGCCAAGG +
Preference number: 2 (lower is better)
Translates to: LLLLAKAETRGSFLNNYAYRQWC*CSLWPR
Trigger: CCTTGGCCACAGGCTGCACCAGCACCACTGCCTATA...TGCATAGTTGTTGAGAAAGGAACCCCTGGTCTCAGCTTTGGCAAGAAGGAGAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000128923.8
ENSMUST00000132293.2
3UTR CAA 90 bp CACCAAAATGCCCATAGTGTGGATCCAAGCCACAGCTTTGACCGCTaGTCTTTCCAGAATGAGGAAGGCAGTGTGCAGGTCTTCTTTGGG +
Preference number: 2 (lower is better)
Translates to: HQNAHSVDPSHSFDR*SFQNEEGSVQVFFG
Trigger: CCCAAAGAAGACCTGCACACTGCCTTCCTCATTCTGGAAAGACAAGCGGTCAAAGCTGTGGCTTGGATCCACACTATGGGCATTTTGGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
3UTR-3UTR GCA 90 bp GGGGTTCCTTTCTCAACAACTATGCAGGAGATACCTTTGGCGCCAGACTCACCAAGCCATTTCCCGAGCTaGAAAGTCAAAGGCCACTTT +
Preference number: 2 (lower is better)
Translates to: GVPFSTTMQEIPLAPDSPSHFPS*KVKGHF
Trigger: AAAGTGGCCTTTGACTTTGCAGCTCGGGAAATGGCT...TGGTGAGTCTGGCGCCAAAGGTATCTCCTGCATAGTTGTTGAGAAAGGAACCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000128923.8
ENSMUST00000132293.2
3UTR-3UTR GCA 90 bp TTTCTCAACAACTATGCAGGAGATACCTTTGGCGCCAGACTCACCAGTTCGGCATCCCAGAGAGCAGGATaGAACATTGATCCTTCCACC +
Preference number: 2 (lower is better)
Translates to: FLNNYAGDTFGARLTSSASQRAG*NIDPST
Trigger: GGTGGAAGGATCAATGTTGCATCCTGCTCTCTGGGA...TGCCGAACTGGTGAGTCTGGCGCCAAAGGTATCTCCTGCATAGTTGTTGAGAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215693.2
3UTR CAA 90 bp ACAAGAATCACCAAAATGCCCATAGTGTGGATCCAAGCCACAGCTTaGACCGCTTGTCTTTCCAGAATGAGGAAGGCAGTGTGCAGGTCT +
Preference number: 2 (lower is better)
Translates to: TRITKMPIVWIQATA*TACLSRMRKAVCRS
Trigger: AGACCTGCACACTGCCTTCCTCATTCTGGAAAGACAAGCGGTCAAAGCTGTGGCTTGGATCCACACTATGGGCATTTTGGTGATTCTTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
3UTR-3UTR TCA 90 bp CTGGCCTCCCCAGACTTTACCTGTTTAATCAGGAAAAGCTTCATTCAAGTACCCAACCAGCAGCGTGGCTaGCAGCTCAGTCTGTTTAGA +
Preference number: 2 (lower is better)
Translates to: LASPDFTCLIRKSFIQVPNQQRG*QLSLFR
Trigger: TCTAAACAGACTGAGCTGTCAGCCACGCTGCTGGTT...GGGTACTTGAATGAAGCTTTTCCTGATTAAACAGGTAAAGTCTGGGGAGGCCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
3UTR-3UTR TCA 90 bp TTGCCAAAGCTGAGACCAGGGGTTCCTTTCTCAACAACTATGCAGGAGATACCTCACCAGTTCGGCACATaGCCACATAGATGTCTGACT +
Preference number: 2 (lower is better)
Translates to: LPKLRPGVPFSTTMQEIPHQFGT*PHRCLT
Trigger: AGTCAGACATCTATGTGGTCATGTGCCGAACTGGTG...AGGTATCTCCTGCATAGTTGTTGAGAAAGGAACCCCTGGTCTCAGCTTTGGCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000128923.8
ENSMUST00000132293.2
ENSMUST00000215693.2
3UTR-3UTR CCA 90 bp CTGGCCTCCCCAGACTTTACCTGTTTAATCAGGAAAAGCTTCATTCAAGTACCCTGTGCAGGTCTTCTTTaGGCATGGCTCCTCAGAGCA +
Preference number: 2 (lower is better)
Translates to: LASPDFTCLIRKSFIQVPCAGLL*AWLLRA
Trigger: TGCTCTGAGGAGCCATGCCCAAAGAAGACCTGCACA...GGGTACTTGAATGAAGCTTTTCCTGATTAAACAGGTAAAGTCTGGGGAGGCCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
3UTR-3UTR CCA 90 bp TTTATTTCATGGTTCCTGGAGTTAAAGGTGCACCCTAACTCATTGCTTAGCAGTATCTGTCCACTGCCCTaGCCTCCCCAGACTTTACCT +
Preference number: 2 (lower is better)
Translates to: FISWFLELKVHPNSLLSSICPLP*PPQTLP
Trigger: AGGTAAAGTCTGGGGAGGCCAGGGCAGTGGACAGAT...ACTGCTAAGCAATGAGTTAGGGTGCACCTTTAACTCCAGGAACCATGAAATAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
3UTR-3UTR GCA 90 bp ATACCACAAGTTGAGTGGTGTCACCAAGAAACTAAGTCAGAATGTCACAAACGTAAGACTGATTCCAGCTaGACACAGACTCCAGGCGAG +
Preference number: 2 (lower is better)
Translates to: IPQVEWCHQETKSECHKRKTDSS*TQTPGE
Trigger: CTCGCCTGGAGTCTGTGTGCAGCTGGAATCAGTCTT...ACGTTTGTGACATTCTGACTTAGTTTCTTGGTGACACCACTCAACTTGTGGTAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
3UTR-3UTR CCA 90 bp TGCTTTTGGAGAAAGCATTTGGTCACACTTCTTTATAAGACATCAGTGAGGTTGGGTCTTCTTTGGGCATaGCTCCTCAGAGCAGCCCTT +
Preference number: 2 (lower is better)
Translates to: CFWRKHLVTLLYKTSVRLGLLWA*LLRAAL
Trigger: AAGGGCTGCTCTGAGGAGCCATGCCCAAAGAAGACC...CAACCTCACTGATGTCTTATAAAGAAGTGTGACCAAATGCTTTCTCCAAAAGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
3UTR-3UTR CCA 90 bp GCTGACTCCATGACGAGCTGTAAGATGCCACTGCAGGAGACTATACCTAATACTTTGACATTTATTTCATaGTTCCTGGAGTTAAAGGTG +
Preference number: 2 (lower is better)
Translates to: ADSMTSCKMPLQETIPNTLTFIS*FLELKV
Trigger: CACCTTTAACTCCAGGAACCATGAAATAAATGTCAA...AGTATTAGGTATAGTCTCCTGCAGTGGCATCTTACAGCTCGTCATGGAGTCAGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
3UTR TCA 72 bp GCCTTCCGCATCACATCCACAGGGAACAGCTCCTTCTaGTCCCACTCCGCCATATTGGGAGCCATTTCCCGA +
Preference number: 3 (lower is better)
Translates to: AFRITSTGNSSF*SHSAILGAISR
Trigger: TCGGGAAATGGCTCCCAATATGGCGGAGTGGGATCAGAAGGAGCTGTTCCCTGTGGATGTGATGCGGAAGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000128923.8
ENSMUST00000132293.2
3UTR GCA 72 bp CCACCATTCAGTCCTTTCATGGCGATGAGAAAACCCTaGCCCTCGGTCCCAATCCTGTTGGCCACAGGGACA +
Preference number: 3 (lower is better)
Translates to: PPFSPFMAMRKP*PSVPILLATGT
Trigger: TGTCCCTGTGGCCAACAGGATTGGGACCGAGGGGCAGGGTTTTCTCATCGCCATGAAAGGACTGAATGGTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215693.2
3UTR CCA 72 bp CAGGGAACAGCTCCTTCTGATCCCACTCCGCCATATTaGGAGCCATTTCCCGAGCTGCAAAGTCAAAGGCCA +
Preference number: 3 (lower is better)
Translates to: QGTAPSDPTPPY*EPFPELQSQRP
Trigger: TGGCCTTTGACTTTGCAGCTCGGGAAATGGCTCCCAATATGGCGGAGTGGGATCAGAAGGAGCTGTTCCCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000128923.8
ENSMUST00000132293.2
3UTR-3UTR CAA 90 bp GAAAACCCTGCCCCTCGGTCCCAATCCTGTTGGCCACAGGGACAGCACAGTCTTAGCGGTGGGCAAAATTaGTGCCTCTGTTCCTCATTT +
Preference number: 3 (lower is better)
Translates to: ENPAPRSQSCWPQGQHSLSGGQN*CLCSSF
Trigger: AAATGAGGAACAGAGGCACAAATTTTGCCCACCGCT...AAGACTGTGCTGTCCCTGTGGCCAACAGGATTGGGACCGAGGGGCAGGGTTTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000128923.8
ENSMUST00000215693.2
3UTR GCA 72 bp ACAGCACAGTCTTCAAAGATCACTGCTCGGGTTGGCTaGGAGTTCCACCCCACCTTCTTCTCCTTCTTGCCA +
Preference number: 3 (lower is better)
Translates to: TAQSSKITARVG*EFHPTFFSFLP
Trigger: TGGCAAGAAGGAGAAGAAGGTGGGGTGGAACTCGCAGCCAACCCGAGCAGTGATCTTTGAAGACTGTGCTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000128923.8
ENSMUST00000215693.2
3UTR GCA 72 bp GCAGAACAGAAACCAGAAAGGGGCAGATCTGTCCACTaGCCTGGCCTCCCCAGACTTTACCTGTTTAATCAG +
Preference number: 3 (lower is better)
Translates to: AEQKPERGRSVH*PGLPRLYLFNQ
Trigger: CTGATTAAACAGGTAAAGTCTGGGGAGGCCAGGGCAGTGGACAGATCTGCCCCTTTCTGGTTTCTGTTCTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
3UTR CCA 72 bp TCCAGGCACACATGTTGTGGATGCTTATATAGGCAGTaGTGCTGGTGCAGCCTGTGGCCAAGGCTTCAAAGA +
Preference number: 3 (lower is better)
Translates to: SRHTCCGCLYRQ*CWCSLWPRLQR
Trigger: TCTTTGAAGCCTTGGCCACAGGCTGCACCAGCACCACTGCCTATATAAGCATCCACAACATGTGTGCCTGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000128923.8
3UTR CCA 72 bp ATCACTCCCACTGCTTGTGGATGCTTATATAGGCAGTaGTGCTGGTGCAGCCTGTGGCCAAGGCTTCAAAGA +
Preference number: 3 (lower is better)
Translates to: ITPTACGCLYRQ*CWCSLWPRLQR
Trigger: TCTTTGAAGCCTTGGCCACAGGCTGCACCAGCACCACTGCCTATATAAGCATCCACAAGCAGTGGGAGTGAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000132293.2
3UTR-3UTR CAA 90 bp AGGTCTTCTTTGGGCATGGCTCCTCAGAGCAGCCCTTCTAGCTCTGCTAAGAACGAAGAGCTCAGCCCTTaGGTCTACTTCATGATTCAC +
Preference number: 3 (lower is better)
Translates to: RSSLGMAPQSSPSSSAKNEELSP*VYFMIH
Trigger: GTGAATCATGAAGTAGACCAAAGGGCTGAGCTCTTC...GTTCTTAGCAGAGCTAGAAGGGCTGCTCTGAGGAGCCATGCCCAAAGAAGACCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
3UTR-3UTR CAA 90 bp GCTAAGAACTCTGTTCTTGTCTCAGAACCAGCAGCGTGGCTGACAGCTCAGTCTGAAGAGCTCAGCCCTTaGGTCTACTTCATGATTCAC +
Preference number: 3 (lower is better)
Translates to: AKNSVLVSEPAAWLTAQSEELSP*VYFMIH
Trigger: GTGAATCATGAAGTAGACCAAAGGGCTGAGCTCTTC...AGACTGAGCTGTCAGCCACGCTGCTGGTTCTGAGACAAGAACAGAGTTCTTAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
3UTR-3UTR CAA 90 bp TTGACCGCTTGTCTTTCCAGAATGAGGAAGGCAGTGTGCAGGTCTTCTTTGGGCCTAAGAACTCTGTTCTaGTCTCAGAACCAGCAGCGT +
Preference number: 3 (lower is better)
Translates to: LTACLSRMRKAVCRSSLGLRTLF*SQNQQR
Trigger: ACGCTGCTGGTTCTGAGACAAGAACAGAGTTCTTAG...GCCCAAAGAAGACCTGCACACTGCCTTCCTCATTCTGGAAAGACAAGCGGTCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
3UTR TCA 72 bp AGAACTCTGTTCTTGTCTCAGAACCAGCAGCGTGGCTaGCAGCTCAGTCTGTTTAGAAGAGCTCAGCCCTTT +
Preference number: 3 (lower is better)
Translates to: RTLFLSQNQQRG*QLSLFRRAQPF
Trigger: AAAGGGCTGAGCTCTTCTAAACAGACTGAGCTGTCAGCCACGCTGCTGGTTCTGAGACAAGAACAGAGTTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
3UTR GCA 72 bp ATCCCACTCCGCCATATTGGGAGCCATTTCCCGAGCTaGAAAGTCAAAGGCCACTTTCTGAAATCCTTTCTG +
Preference number: 3 (lower is better)
Translates to: IPLRHIGSHFPS*KVKGHFLKSFL
Trigger: CAGAAAGGATTTCAGAAAGTGGCCTTTGACTTTGCAGCTCGGGAAATGGCTCCCAATATGGCGGAGTGGGAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000128923.8
ENSMUST00000132293.2
3UTR TCA 72 bp CTCAGCCCTTTGGTCTACTTCATGATTCACTTGAACTaGGCAGCCCATAGGAGCATCAAGACTGATTCCAGC +
Preference number: 3 (lower is better)
Translates to: LSPLVYFMIHLN*AAHRSIKTDSS
Trigger: GCTGGAATCAGTCTTGATGCTCCTATGGGCTGCTCAGTTCAAGTGAATCATGAAGTAGACCAAAGGGCTGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
3UTR-3UTR CAA 90 bp ATACCACAAGTTGAGTGGTGTCACCAAGAAACTAAGTCAGAATGTCACAAACGTGTGTGCAGGTCTTCTTaGGGCATGGCTCCTCAGAGC +
Preference number: 3 (lower is better)
Translates to: IPQVEWCHQETKSECHKRVCRSS*GMAPQS
Trigger: GCTCTGAGGAGCCATGCCCAAAGAAGACCTGCACAC...ACGTTTGTGACATTCTGACTTAGTTTCTTGGTGACACCACTCAACTTGTGGTAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
3UTR-3UTR CAA 90 bp GCTGACTCCATGACGAGCTGTAAGATGCCACTGCAGGAGACTATACCTAATACTCACAGCTTTGACCGCTaGTCTTTCCAGAATGAGGAA +
Preference number: 3 (lower is better)
Translates to: ADSMTSCKMPLQETIPNTHSFDR*SFQNEE
Trigger: TTCCTCATTCTGGAAAGACAAGCGGTCAAAGCTGTG...AGTATTAGGTATAGTCTCCTGCAGTGGCATCTTACAGCTCGTCATGGAGTCAGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
3UTR-3UTR CAA 90 bp CTGGCCTCCCCAGACTTTACCTGTTTAATCAGGAAAAGCTTCATTCAAGTACCCCACAGCTTTGACCGCTaGTCTTTCCAGAATGAGGAA +
Preference number: 3 (lower is better)
Translates to: LASPDFTCLIRKSFIQVPHSFDR*SFQNEE
Trigger: TTCCTCATTCTGGAAAGACAAGCGGTCAAAGCTGTG...GGGTACTTGAATGAAGCTTTTCCTGATTAAACAGGTAAAGTCTGGGGAGGCCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
3UTR TCA 72 bp ACCATTGAGGATGTAATGATCTCCTTGTTGTTTAGCTaGGGTCAGAAGAGATGCAGCATCACTCCCACTGCC +
Preference number: 3 (lower is better)
Translates to: TIEDVMISLLFS*GQKRCSITPTA
Trigger: GGCAGTGGGAGTGATGCTGCATCTCTTCTGACCTCAGCTAAACAACAAGGAGATCATTACATCCTCAATGGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000128923.8
ENSMUST00000215693.2
3UTR CCA 72 bp GCAGTAGGAAGCAAACTTCTCCATGGTACAGAGCGGTaGGCAAAATTTGTGCCTCTGTTCCTCATTTCCAAA +
Preference number: 3 (lower is better)
Translates to: AVGSKLLHGTER*AKFVPLFLISK
Trigger: TTTGGAAATGAGGAACAGAGGCACAAATTTTGCCCACCGCTCTGTACCATGGAGAAGTTTGCTTCCTACTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000128923.8
ENSMUST00000215693.2
3UTR TCA 72 bp ACCATTGAGGATGTAATGATCTCCTTGTTGTTTAGCTaGGGTCAGAAGAGATGCAGCATCACTCCCACTGCT +
Preference number: 3 (lower is better)
Translates to: TIEDVMISLLFS*GQKRCSITPTA
Trigger: AGCAGTGGGAGTGATGCTGCATCTCTTCTGACCTCAGCTAAACAACAAGGAGATCATTACATCCTCAATGGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000132293.2
3UTR TCA 72 bp TTATTTCATCATGATCTGAGTACAGGAGTACTGTCCTaGCATACCCCTAGTGCAGAACAGAAACCAGAAAGG +
Preference number: 3 (lower is better)
Translates to: LFHHDLSTGVLS*HTPSAEQKPER
Trigger: CCTTTCTGGTTTCTGTTCTGCACTAGGGGTATGTCAGGACAGTACTCCTGTACTCAGATCATGATGAAATAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
3UTR-3UTR CAA 90 bp TGCTTTTGGAGAAAGCATTTGGTCACACTTCTTTATAAGACATCAGTGAGGTTGCTAAGAACTCTGTTCTaGTCTCAGAACCAGCAGCGT +
Preference number: 3 (lower is better)
Translates to: CFWRKHLVTLLYKTSVRLLRTLF*SQNQQR
Trigger: ACGCTGCTGGTTCTGAGACAAGAACAGAGTTCTTAG...CAACCTCACTGATGTCTTATAAAGAAGTGTGACCAAATGCTTTCTCCAAAAGCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
3UTR TCA 72 bp AGCAGTAGGTTCCCAAATATTTATTTCATCATGATCTaGGTACAGGAGTACTGTCCTGACATACCCCTAGTG +
Preference number: 3 (lower is better)
Translates to: SSRFPNIYFIMI*VQEYCPDIPLV
Trigger: CACTAGGGGTATGTCAGGACAGTACTCCTGTACTCAGATCATGATGAAATAAATATTTGGGAACCTACTGCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
3UTR TCA 72 bp TGCTTAGCAGTAGGTTCCCAAATATTTATTTCATCATaGTCTGAGTACAGGAGTACTGTCCTGACATACCCC +
Preference number: 3 (lower is better)
Translates to: CLAVGSQIFISS*SEYRSTVLTYP
Trigger: GGGGTATGTCAGGACAGTACTCCTGTACTCAGATCATGATGAAATAAATATTTGGGAACCTACTGCTAAGCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
3UTR CCA 72 bp AGCTCAGAATACCGTAACAAAATACCACAAGTTGAGTaGTGTCACCAAGAAACTAAGTCAGAATGTCACAAA +
Preference number: 3 (lower is better)
Translates to: SSEYRNKIPQVE*CHQETKSECHK
Trigger: TTTGTGACATTCTGACTTAGTTTCTTGGTGACACCACTCAACTTGTGGTATTTTGTTACGGTATTCTGAGCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
CDS-3UTR CCA 90 bp CTGAGCCGGGCTGACTCCATGACGAGCTGTAAGATGCCACTGCAGGAGACTATAGATCACTGCTCGGGTTaGCTGCGAGTTCCACCCCAC +
Preference number: 4 (lower is better)
Translates to: LSRADSMTSCKMPLQETIDHCSG*LRVPPH
Trigger: GTGGGGTGGAACTCGCAGCCAACCCGAGCAGTGATC...TATAGTCTCCTGCAGTGGCATCTTACAGCTCGTCATGGAGTCAGCCCGGCTCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
CDS-3UTR GCA 90 bp GCTAAGAACTCTGTTCTTGTCTCAGAACCAGCAGCGTGGCTGACAGCTCAGTCTACTGCTCGGGTTGGCTaGGAGTTCCACCCCACCTTC +
Preference number: 4 (lower is better)
Translates to: AKNSVLVSEPAAWLTAQSTARVG*EFHPTF
Trigger: GAAGGTGGGGTGGAACTCGCAGCCAACCCGAGCAGT...AGACTGAGCTGTCAGCCACGCTGCTGGTTCTGAGACAAGAACAGAGTTCTTAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
CDS-3UTR GCA 90 bp CTGAGCCGGGCTGACTCCATGACGAGCTGTAAGATGCCACTGCAGGAGACTATACTGCAAAGCCACTGCTaGAGTACGGATCATCAGCCG +
Preference number: 4 (lower is better)
Translates to: LSRADSMTSCKMPLQETILQSHC*STDHQP
Trigger: CGGCTGATGATCCGTACTGCAGCAGTGGCTTTGCAG...TATAGTCTCCTGCAGTGGCATCTTACAGCTCGTCATGGAGTCAGCCCGGCTCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
CDS-3UTR CCA 90 bp GATCTGTCCACTGCCCTGGCCTCCCCAGACTTTACCTGTTTAATCAGGAAAAGCGATCACTGCTCGGGTTaGCTGCGAGTTCCACCCCAC +
Preference number: 4 (lower is better)
Translates to: DLSTALASPDFTCLIRKSDHCSG*LRVPPH
Trigger: GTGGGGTGGAACTCGCAGCCAACCCGAGCAGTGATC...GCTTTTCCTGATTAAACAGGTAAAGTCTGGGGAGGCCAGGGCAGTGGACAGATC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
CDS-3UTR CCA 90 bp CCCATAGGAGCATCAAGACTGATTCCAGCTGCACACAGACTCCAGGCGAGGCTCGGATCTGGTGGACCCTaGAGTCCCGCATATACTGTT +
Preference number: 4 (lower is better)
Translates to: PIGASRLIPAAHRLQARLGSGGP*SPAYTV
Trigger: AACAGTATATGCGGGACTCCAGGGTCCACCAGATCC...GAGCCTCGCCTGGAGTCTGTGTGCAGCTGGAATCAGTCTTGATGCTCCTATGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
3UTR CAA 72 bp GCGATGAGAAAACCCTGCCCCTCGGTCCCAATCCTGTaGGCCACAGGGACAGCACAGTCTTCAAAGATCACT +
Preference number: 4 (lower is better)
Translates to: AMRKPCPSVPIL*ATGTAQSSKIT
Trigger: AGTGATCTTTGAAGACTGTGCTGTCCCTGTGGCCAACAGGATTGGGACCGAGGGGCAGGGTTTTCTCATCGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000128923.8
ENSMUST00000215693.2
CDS-3UTR GCA 90 bp GAAAACCCTGCCCCTCGGTCCCAATCCTGTTGGCCACAGGGACAGCACAGTCTTAGCCATTTCCCGAGCTaGAAAGTCAAAGGCCACTTT +
Preference number: 4 (lower is better)
Translates to: ENPAPRSQSCWPQGQHSLSHFPS*KVKGHF
Trigger: AAAGTGGCCTTTGACTTTGCAGCTCGGGAAATGGCT...AAGACTGTGCTGTCCCTGTGGCCAACAGGATTGGGACCGAGGGGCAGGGTTTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000215693.2
CDS-3UTR GCA 90 bp GCTAAGAACTCTGTTCTTGTCTCAGAACCAGCAGCGTGGCTGACAGCTCAGTCTGCGATGAGAAAACCCTaGCCCTCGGTCCCAATCCTG +
Preference number: 4 (lower is better)
Translates to: AKNSVLVSEPAAWLTAQSAMRKP*PSVPIL
Trigger: CAGGATTGGGACCGAGGGGCAGGGTTTTCTCATCGC...AGACTGAGCTGTCAGCCACGCTGCTGGTTCTGAGACAAGAACAGAGTTCTTAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
CDS-3UTR CCA 90 bp TTGACCGCTTGTCTTTCCAGAATGAGGAAGGCAGTGTGCAGGTCTTCTTTGGGCTATAGGCAGTGGTGCTaGTGCAGCCTGTGGCCAAGG +
Preference number: 4 (lower is better)
Translates to: LTACLSRMRKAVCRSSLGYRQWC*CSLWPR
Trigger: CCTTGGCCACAGGCTGCACCAGCACCACTGCCTATA...GCCCAAAGAAGACCTGCACACTGCCTTCCTCATTCTGGAAAGACAAGCGGTCAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
CDS-3UTR CCA 90 bp CTGAGCCGGGCTGACTCCATGACGAGCTGTAAGATGCCACTGCAGGAGACTATATGCTTATATAGGCAGTaGTGCTGGTGCAGCCTGTGG +
Preference number: 4 (lower is better)
Translates to: LSRADSMTSCKMPLQETICLYRQ*CWCSLW
Trigger: CCACAGGCTGCACCAGCACCACTGCCTATATAAGCA...TATAGTCTCCTGCAGTGGCATCTTACAGCTCGTCATGGAGTCAGCCCGGCTCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
CDS-3UTR CCA 90 bp GATCTGTCCACTGCCCTGGCCTCCCCAGACTTTACCTGTTTAATCAGGAAAAGCCGGTCCCAATCCTGTTaGCCACAGGGACAGCACAGT +
Preference number: 4 (lower is better)
Translates to: DLSTALASPDFTCLIRKSRSQSC*PQGQHS
Trigger: ACTGTGCTGTCCCTGTGGCCAACAGGATTGGGACCG...GCTTTTCCTGATTAAACAGGTAAAGTCTGGGGAGGCCAGGGCAGTGGACAGATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
CDS-3UTR CCA 90 bp CTGAGCCGGGCTGACTCCATGACGAGCTGTAAGATGCCACTGCAGGAGACTATACAAAGAGCTTGGCCATaGAACACAGGGCCACTGCAT +
Preference number: 4 (lower is better)
Translates to: LSRADSMTSCKMPLQETIQRAWP*NTGPLH
Trigger: ATGCAGTGGCCCTGTGTTCCATGGCCAAGCTCTTTG...TATAGTCTCCTGCAGTGGCATCTTACAGCTCGTCATGGAGTCAGCCCGGCTCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
3UTR CAA 72 bp CTTTCCAGAATGAGGAAGGCAGTGTGCAGGTCTTCTTaGGGCATGGCTCCTCAGAGCAGCCCTTCTAGCTCT +
Preference number: 4 (lower is better)
Translates to: LSRMRKAVCRSS*GMAPQSSPSSS
Trigger: AGAGCTAGAAGGGCTGCTCTGAGGAGCCATGCCCAAAGAAGACCTGCACACTGCCTTCCTCATTCTGGAAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
3UTR CAA 72 bp GCCCATAGTGTGGATCCAAGCCACAGCTTTGACCGCTaGTCTTTCCAGAATGAGGAAGGCAGTGTGCAGGTC +
Preference number: 4 (lower is better)
Translates to: AHSVDPSHSFDR*SFQNEEGSVQV
Trigger: GACCTGCACACTGCCTTCCTCATTCTGGAAAGACAAGCGGTCAAAGCTGTGGCTTGGATCCACACTATGGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
CDS-3UTR TCA 90 bp CCCATAGGAGCATCAAGACTGATTCCAGCTGCACACAGACTCCAGGCGAGGCTCCCAAGGCTTCAAAGATaGCAGAAGTATCAAGGCGAG +
Preference number: 4 (lower is better)
Translates to: PIGASRLIPAAHRLQARLPRLQR*QKYQGE
Trigger: CTCGCCTTGATACTTCTGTCATCTTTGAAGCCTTGG...GAGCCTCGCCTGGAGTCTGTGTGCAGCTGGAATCAGTCTTGATGCTCCTATGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
CDS-3UTR TCA 90 bp CTGAGCCGGGCTGACTCCATGACGAGCTGTAAGATGCCACTGCAGGAGACTATACACCAGTTCGGCACATaGCCACATAGATGTCTGACT +
Preference number: 4 (lower is better)
Translates to: LSRADSMTSCKMPLQETIHQFGT*PHRCLT
Trigger: AGTCAGACATCTATGTGGTCATGTGCCGAACTGGTG...TATAGTCTCCTGCAGTGGCATCTTACAGCTCGTCATGGAGTCAGCCCGGCTCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
CDS-3UTR GCA 90 bp GCTGACTCCATGACGAGCTGTAAGATGCCACTGCAGGAGACTATACCTAATACTACTGCTCGGGTTGGCTaGGAGTTCCACCCCACCTTC +
Preference number: 4 (lower is better)
Translates to: ADSMTSCKMPLQETIPNTTARVG*EFHPTF
Trigger: GAAGGTGGGGTGGAACTCGCAGCCAACCCGAGCAGT...AGTATTAGGTATAGTCTCCTGCAGTGGCATCTTACAGCTCGTCATGGAGTCAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
CDS-3UTR GCA 90 bp CCCATAGGAGCATCAAGACTGATTCCAGCTGCACACAGACTCCAGGCGAGGCTCCTTGGTGGCCATATCTaGCAACTGGAATTGGAGGTA +
Preference number: 4 (lower is better)
Translates to: PIGASRLIPAAHRLQARLLGGHI*QLELEV
Trigger: TACCTCCAATTCCAGTTGGCAGATATGGCCACCAAG...GAGCCTCGCCTGGAGTCTGTGTGCAGCTGGAATCAGTCTTGATGCTCCTATGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
CDS-3UTR GCA 90 bp AGGTCTTCTTTGGGCATGGCTCCTCAGAGCAGCCCTTCTAGCTCTGCTAAGAACTCTTCCCGCTCTTCCTaGAAAGCCACTGCTGCAGTA +
Preference number: 4 (lower is better)
Translates to: RSSLGMAPQSSPSSSAKNSSRSS*KATAAV
Trigger: TACTGCAGCAGTGGCTTTGCAGGAAGAGCGGGAAGA...GTTCTTAGCAGAGCTAGAAGGGCTGCTCTGAGGAGCCATGCCCAAAGAAGACCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
CDS-3UTR CCA 90 bp CCCATAGGAGCATCAAGACTGATTCCAGCTGCACACAGACTCCAGGCGAGGCTCAAGCAAACTTCTCCATaGTACAGAGCGGTGGGCAAA +
Preference number: 4 (lower is better)
Translates to: PIGASRLIPAAHRLQARLKQTSP*YRAVGK
Trigger: TTTGCCCACCGCTCTGTACCATGGAGAAGTTTGCTT...GAGCCTCGCCTGGAGTCTGTGTGCAGCTGGAATCAGTCTTGATGCTCCTATGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
CDS-3UTR CCA 90 bp TTGACCGCTTGTCTTTCCAGAATGAGGAAGGCAGTGTGCAGGTCTTCTTTGGGCCCTTCTAGGATCTGGTaGACCCTGGAGTCCCGCATA +
Preference number: 4 (lower is better)
Translates to: LTACLSRMRKAVCRSSLGPSRIW*TLESRI
Trigger: TATGCGGGACTCCAGGGTCCACCAGATCCTAGAAGG...GCCCAAAGAAGACCTGCACACTGCCTTCCTCATTCTGGAAAGACAAGCGGTCAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
3UTR CAA 72 bp GGGGTTCCTTTCTCAACAACTATGCAGGAGATACCTTaGGCGCCAGACTCACCAGTTCGGCACATGACCACA +
Preference number: 4 (lower is better)
Translates to: GVPFSTTMQEIP*APDSPVRHMTT
Trigger: TGTGGTCATGTGCCGAACTGGTGAGTCTGGCGCCAAAGGTATCTCCTGCATAGTTGTTGAGAAAGGAACCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000128923.8
ENSMUST00000132293.2
ENSMUST00000215693.2
CDS-3UTR TCA 90 bp GATCTGTCCACTGCCCTGGCCTCCCCAGACTTTACCTGTTTAATCAGGAAAAGCGACCACATAGATGTCTaGCTCACCTCCCCCACTGAT +
Preference number: 4 (lower is better)
Translates to: DLSTALASPDFTCLIRKSDHIDV*LTSPTD
Trigger: ATCAGTGGGGGAGGTGAGTCAGACATCTATGTGGTC...GCTTTTCCTGATTAAACAGGTAAAGTCTGGGGAGGCCAGGGCAGTGGACAGATC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
CDS-3UTR TCA 90 bp TTGACCGCTTGTCTTTCCAGAATGAGGAAGGCAGTGTGCAGGTCTTCTTTGGGCCCTTCTTGCCAAAGCTaGGACCAGGGGTTCCTTTCT +
Preference number: 4 (lower is better)
Translates to: LTACLSRMRKAVCRSSLGPSCQS*DQGFLS
Trigger: AGAAAGGAACCCCTGGTCTCAGCTTTGGCAAGAAGG...GCCCAAAGAAGACCTGCACACTGCCTTCCTCATTCTGGAAAGACAAGCGGTCAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
CDS-3UTR TCA 90 bp GACCAGGGGTTCCTTTCTCAACAACTATGCAGGAGATACCTTTGGCGCCAGACTGCCCCAAGGAAGCTGTaGACAGGACCAGACATATTC +
Preference number: 4 (lower is better)
Translates to: DQGFLSQQLCRRYLWRQTAPRKL*TGPDIF
Trigger: GAATATGTCTGGTCCTGTTCACAGCTTCCTTGGGGC...AGTCTGGCGCCAAAGGTATCTCCTGCATAGTTGTTGAGAAAGGAACCCCTGGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000128923.8
ENSMUST00000132293.2
CDS-3UTR GCA 90 bp GCTGACTCCATGACGAGCTGTAAGATGCCACTGCAGGAGACTATACCTAATACTGCGATGAGAAAACCCTaGCCCTCGGTCCCAATCCTG +
Preference number: 4 (lower is better)
Translates to: ADSMTSCKMPLQETIPNTAMRKP*PSVPIL
Trigger: CAGGATTGGGACCGAGGGGCAGGGTTTTCTCATCGC...AGTATTAGGTATAGTCTCCTGCAGTGGCATCTTACAGCTCGTCATGGAGTCAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
CDS-3UTR GCA 90 bp AGGTCTTCTTTGGGCATGGCTCCTCAGAGCAGCCCTTCTAGCTCTGCTAAGAACAAAGGTGCTCCAAACTaGTTGCGGACCTTGAGGTGT +
Preference number: 4 (lower is better)
Translates to: RSSLGMAPQSSPSSSAKNKGAPN*LRTLRC
Trigger: ACACCTCAAGGTCCGCAAGCAGTTTGGAGCACCTTT...GTTCTTAGCAGAGCTAGAAGGGCTGCTCTGAGGAGCCATGCCCAAAGAAGACCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
CDS-3UTR GCA 90 bp TCTAGCTCTGCTAAGAACTCTGTTCTTGTCTCAGAACCAGCAGCGTGGCTGACAGCTTCTGGCCAAAGGTaGTCCAAACTGCTTGCGGAC +
Preference number: 4 (lower is better)
Translates to: SSSAKNSVLVSEPAAWLTASGQR*SKLLAD
Trigger: GTCCGCAAGCAGTTTGGAGCACCTTTGGCCAGAAGC...TGTCAGCCACGCTGCTGGTTCTGAGACAAGAACAGAGTTCTTAGCAGAGCTAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
CDS-3UTR GCA 90 bp GCTAAGAACTCTGTTCTTGTCTCAGAACCAGCAGCGTGGCTGACAGCTCAGTCTTCTTCCCGCTCTTCCTaGAAAGCCACTGCTGCAGTA +
Preference number: 4 (lower is better)
Translates to: AKNSVLVSEPAAWLTAQSSSRSS*KATAAV
Trigger: TACTGCAGCAGTGGCTTTGCAGGAAGAGCGGGAAGA...AGACTGAGCTGTCAGCCACGCTGCTGGTTCTGAGACAAGAACAGAGTTCTTAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
CDS-3UTR CCA 90 bp TTGACCGCTTGTCTTTCCAGAATGAGGAAGGCAGTGTGCAGGTCTTCTTTGGGCGGAGGTACTGGCTTCTaGCCAAAGGTGCTCCAAACT +
Preference number: 4 (lower is better)
Translates to: LTACLSRMRKAVCRSSLGGGTGF*PKVLQT
Trigger: AGTTTGGAGCACCTTTGGCCAGAAGCCAGTACCTCC...GCCCAAAGAAGACCTGCACACTGCCTTCCTCATTCTGGAAAGACAAGCGGTCAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
CDS-3UTR TCA 90 bp AGGTCTTCTTTGGGCATGGCTCCTCAGAGCAGCCCTTCTAGCTCTGCTAAGAACCCAAGGCTTCAAAGATaGCAGAAGTATCAAGGCGAG +
Preference number: 4 (lower is better)
Translates to: RSSLGMAPQSSPSSSAKNPRLQR*QKYQGE
Trigger: CTCGCCTTGATACTTCTGTCATCTTTGAAGCCTTGG...GTTCTTAGCAGAGCTAGAAGGGCTGCTCTGAGGAGCCATGCCCAAAGAAGACCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
CDS-3UTR GCA 90 bp CTGAGCCGGGCTGACTCCATGACGAGCTGTAAGATGCCACTGCAGGAGACTATAGGTGGGCAAAATTTGTaGCTCTGTTCCTCATTTCCA +
Preference number: 4 (lower is better)
Translates to: LSRADSMTSCKMPLQETIGGQNL*LCSSFP
Trigger: TGGAAATGAGGAACAGAGGCACAAATTTTGCCCACC...TATAGTCTCCTGCAGTGGCATCTTACAGCTCGTCATGGAGTCAGCCCGGCTCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
CDS-3UTR CCA 90 bp TCTAGCTCTGCTAAGAACTCTGTTCTTGTCTCAGAACCAGCAGCGTGGCTGACAATCACTCCCACTGCCTaGTTCAGTGAGGCAGTAGGA +
Preference number: 4 (lower is better)
Translates to: SSSAKNSVLVSEPAAWLTITPTA*FSEAVG
Trigger: TCCTACTGCCTCACTGAACCAGGCAGTGGGAGTGAT...TGTCAGCCACGCTGCTGGTTCTGAGACAAGAACAGAGTTCTTAGCAGAGCTAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060513.8
CDS-3UTR CCA 90 bp CCCATAGGAGCATCAAGACTGATTCCAGCTGCACACAGACTCCAGGCGAGGCTCACCTTGAGGTGTTCTTaGGTTAGGATAACTGAAGCA +
Preference number: 4 (lower is better)
Translates to: PIGASRLIPAAHRLQARLTLRCS*VRITEA
Trigger: TGCTTCAGTTATCCTAACCCAAGAACACCTCAAGGT...GAGCCTCGCCTGGAGTCTGTGTGCAGCTGGAATCAGTCTTGATGCTCCTATGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
CDS-3UTR CCA 90 bp GCTAAGAACTCTGTTCTTGTCTCAGAACCAGCAGCGTGGCTGACAGCTCAGTCTTGGAATTGGAGGTACTaGCTTCTGGCCAAAGGTGCT +
Preference number: 4 (lower is better)
Translates to: AKNSVLVSEPAAWLTAQSWNWRY*LLAKGA
Trigger: AGCACCTTTGGCCAGAAGCCAGTACCTCCAATTCCA...AGACTGAGCTGTCAGCCACGCTGCTGGTTCTGAGACAAGAACAGAGTTCTTAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
CDS-3UTR TCA 90 bp CAGGGACAGCACAGTCTTCAAAGATCACTGCTCGGGTTGGCTGCGAGTTCCACCTCAAAGGCCACTTTCTaGAATCCTTTCTGTTCTTCA +
Preference number: 4 (lower is better)
Translates to: QGQHSLQRSLLGLAASSTSKATF*NPFCSS
Trigger: TGAAGAACAGAAAGGATTTCAGAAAGTGGCCTTTGA...GGTGGAACTCGCAGCCAACCCGAGCAGTGATCTTTGAAGACTGTGCTGTCCCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215693.2
CDS-3UTR TCA 90 bp GCTGACTCCATGACGAGCTGTAAGATGCCACTGCAGGAGACTATACCTAATACTCCTTCTTGCCAAAGCTaGGACCAGGGGTTCCTTTCT +
Preference number: 4 (lower is better)
Translates to: ADSMTSCKMPLQETIPNTPSCQS*DQGFLS
Trigger: AGAAAGGAACCCCTGGTCTCAGCTTTGGCAAGAAGG...AGTATTAGGTATAGTCTCCTGCAGTGGCATCTTACAGCTCGTCATGGAGTCAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
CDS-3UTR GCA 90 bp TCTAGCTCTGCTAAGAACTCTGTTCTTGTCTCAGAACCAGCAGCGTGGCTGACATCCCAGAGAGCAGGATaGAACATTGATCCTTCCACC +
Preference number: 4 (lower is better)
Translates to: SSSAKNSVLVSEPAAWLTSQRAG*NIDPST
Trigger: GGTGGAAGGATCAATGTTGCATCCTGCTCTCTGGGA...TGTCAGCCACGCTGCTGGTTCTGAGACAAGAACAGAGTTCTTAGCAGAGCTAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
CDS-3UTR GCA 90 bp CTGGCCTCCCCAGACTTTACCTGTTTAATCAGGAAAAGCTTCATTCAAGTACCCCTGCAAAGCCACTGCTaGAGTACGGATCATCAGCCG +
Preference number: 4 (lower is better)
Translates to: LASPDFTCLIRKSFIQVPLQSHC*STDHQP
Trigger: CGGCTGATGATCCGTACTGCAGCAGTGGCTTTGCAG...GGGTACTTGAATGAAGCTTTTCCTGATTAAACAGGTAAAGTCTGGGGAGGCCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
CDS-3UTR CCA 90 bp GCTGACTCCATGACGAGCTGTAAGATGCCACTGCAGGAGACTATACCTAATACTTGCTTATATAGGCAGTaGTGCTGGTGCAGCCTGTGG +
Preference number: 4 (lower is better)
Translates to: ADSMTSCKMPLQETIPNTCLYRQ*CWCSLW
Trigger: CCACAGGCTGCACCAGCACCACTGCCTATATAAGCA...AGTATTAGGTATAGTCTCCTGCAGTGGCATCTTACAGCTCGTCATGGAGTCAGC
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
CDS-3UTR CCA 90 bp TCTAGCTCTGCTAAGAACTCTGTTCTTGTCTCAGAACCAGCAGCGTGGCTGACACATGGTACAGAGCGGTaGGCAAAATTTGTGCCTCTG +
Preference number: 4 (lower is better)
Translates to: SSSAKNSVLVSEPAAWLTHGTER*AKFVPL
Trigger: CAGAGGCACAAATTTTGCCCACCGCTCTGTACCATG...TGTCAGCCACGCTGCTGGTTCTGAGACAAGAACAGAGTTCTTAGCAGAGCTAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
CDS-3UTR CCA 90 bp GCTGACTCCATGACGAGCTGTAAGATGCCACTGCAGGAGACTATACCTAATACTGGAGGTACTGGCTTCTaGCCAAAGGTGCTCCAAACT +
Preference number: 4 (lower is better)
Translates to: ADSMTSCKMPLQETIPNTGGTGF*PKVLQT
Trigger: AGTTTGGAGCACCTTTGGCCAGAAGCCAGTACCTCC...AGTATTAGGTATAGTCTCCTGCAGTGGCATCTTACAGCTCGTCATGGAGTCAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
CDS-3UTR TCA 90 bp AAGTACCCAGACCCTAAGGACAAGAATCACCAAAATGCCCATAGTGTGGATCCAGACCACATAGATGTCTaGCTCACCTCCCCCACTGAT +
Preference number: 4 (lower is better)
Translates to: KYPDPKDKNHQNAHSVDPDHIDV*LTSPTD
Trigger: ATCAGTGGGGGAGGTGAGTCAGACATCTATGTGGTC...TGGATCCACACTATGGGCATTTTGGTGATTCTTGTCCTTAGGGTCTGGGTACTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
CDS-3UTR TCA 90 bp AGCCATTTCCCGAGCTGCAAAGTCAAAGGCCACTTTCTGAAATCCTTTCTGTTCGCCCCAAGGAAGCTGTaGACAGGACCAGACATATTC +
Preference number: 4 (lower is better)
Translates to: SHFPSCKVKGHFLKSFLFAPRKL*TGPDIF
Trigger: GAATATGTCTGGTCCTGTTCACAGCTTCCTTGGGGC...GAACAGAAAGGATTTCAGAAAGTGGCCTTTGACTTTGCAGCTCGGGAAATGGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000128923.8
ENSMUST00000132293.2
CDS-3UTR GCA 90 bp TCTAGCTCTGCTAAGAACTCTGTTCTTGTCTCAGAACCAGCAGCGTGGCTGACAAGCCATTTCCCGAGCTaGAAAGTCAAAGGCCACTTT +
Preference number: 4 (lower is better)
Translates to: SSSAKNSVLVSEPAAWLTSHFPS*KVKGHF
Trigger: AAAGTGGCCTTTGACTTTGCAGCTCGGGAAATGGCT...TGTCAGCCACGCTGCTGGTTCTGAGACAAGAACAGAGTTCTTAGCAGAGCTAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
CDS-3UTR CCA 90 bp TCTAGCTCTGCTAAGAACTCTGTTCTTGTCTCAGAACCAGCAGCGTGGCTGACATGCATCTGCAAAGCCTaGTTGCAGATAGCAAAGCAC +
Preference number: 4 (lower is better)
Translates to: SSSAKNSVLVSEPAAWLTCICKA*LQIAKH
Trigger: GTGCTTTGCTATCTGCAACCAGGCTTTGCAGATGCA...TGTCAGCCACGCTGCTGGTTCTGAGACAAGAACAGAGTTCTTAGCAGAGCTAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
CDS-3UTR TCA 90 bp TCTAGCTCTGCTAAGAACTCTGTTCTTGTCTCAGAACCAGCAGCGTGGCTGACAAGGCCTTGGAACCATTaGGGATGTAATGATCTCCTT +
Preference number: 4 (lower is better)
Translates to: SSSAKNSVLVSEPAAWLTRPWNH*GCNDLL
Trigger: AAGGAGATCATTACATCCTCAATGGTTCCAAGGCCT...TGTCAGCCACGCTGCTGGTTCTGAGACAAGAACAGAGTTCTTAGCAGAGCTAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
CDS-3UTR TCA 90 bp AAGTACCCAGACCCTAAGGACAAGAATCACCAAAATGCCCATAGTGTGGATCCACACCAGTTCGGCACATaGCCACATAGATGTCTGACT +
Preference number: 4 (lower is better)
Translates to: KYPDPKDKNHQNAHSVDPHQFGT*PHRCLT
Trigger: AGTCAGACATCTATGTGGTCATGTGCCGAACTGGTG...TGGATCCACACTATGGGCATTTTGGTGATTCTTGTCCTTAGGGTCTGGGTACTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
CDS-3UTR TCA 90 bp CCGCCATATTGGGAGCCATTTCCCGAGCTGCAAAGTCAAAGGCCACTTTCTGAACCAGACATATTCAATTaGTCGATGCAGAAGGTGATG +
Preference number: 4 (lower is better)
Translates to: PPYWEPFPELQSQRPLSEPDIFN*SMQKVM
Trigger: CATCACCTTCTGCATCGATCAATTGAATATGTCTGG...TTCAGAAAGTGGCCTTTGACTTTGCAGCTCGGGAAATGGCTCCCAATATGGCGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000128923.8
ENSMUST00000132293.2
CDS-3UTR GCA 90 bp CTGGCCTCCCCAGACTTTACCTGTTTAATCAGGAAAAGCTTCATTCAAGTACCCAAAGGTGCTCCAAACTaGTTGCGGACCTTGAGGTGT +
Preference number: 4 (lower is better)
Translates to: LASPDFTCLIRKSFIQVPKGAPN*LRTLRC
Trigger: ACACCTCAAGGTCCGCAAGCAGTTTGGAGCACCTTT...GGGTACTTGAATGAAGCTTTTCCTGATTAAACAGGTAAAGTCTGGGGAGGCCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
CDS-3UTR TCA 90 bp GATCTGTCCACTGCCCTGGCCTCCCCAGACTTTACCTGTTTAATCAGGAAAAGCTCAAAGGCCACTTTCTaGAATCCTTTCTGTTCTTCA +
Preference number: 4 (lower is better)
Translates to: DLSTALASPDFTCLIRKSSKATF*NPFCSS
Trigger: TGAAGAACAGAAAGGATTTCAGAAAGTGGCCTTTGA...GCTTTTCCTGATTAAACAGGTAAAGTCTGGGGAGGCCAGGGCAGTGGACAGATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
CDS-3UTR TCA 90 bp AAGCTGAGACCAGGGGTTCCTTTCTCAACAACTATGCAGGAGATACCTTTGGCGCCAGACATATTCAATTaGTCGATGCAGAAGGTGATG +
Preference number: 4 (lower is better)
Translates to: KLRPGVPFSTTMQEIPLAPDIFN*SMQKVM
Trigger: CATCACCTTCTGCATCGATCAATTGAATATGTCTGG...CGCCAAAGGTATCTCCTGCATAGTTGTTGAGAAAGGAACCCCTGGTCTCAGCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000128923.8
ENSMUST00000132293.2
CDS-3UTR GCA 90 bp GCTGACTCCATGACGAGCTGTAAGATGCCACTGCAGGAGACTATACCTAATACTGGTGGGCAAAATTTGTaGCTCTGTTCCTCATTTCCA +
Preference number: 4 (lower is better)
Translates to: ADSMTSCKMPLQETIPNTGGQNL*LCSSFP
Trigger: TGGAAATGAGGAACAGAGGCACAAATTTTGCCCACC...AGTATTAGGTATAGTCTCCTGCAGTGGCATCTTACAGCTCGTCATGGAGTCAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
CDS-3UTR GCA 90 bp CTGGCCTCCCCAGACTTTACCTGTTTAATCAGGAAAAGCTTCATTCAAGTACCCCTTGGTGGCCATATCTaGCAACTGGAATTGGAGGTA +
Preference number: 4 (lower is better)
Translates to: LASPDFTCLIRKSFIQVPLGGHI*QLELEV
Trigger: TACCTCCAATTCCAGTTGGCAGATATGGCCACCAAG...GGGTACTTGAATGAAGCTTTTCCTGATTAAACAGGTAAAGTCTGGGGAGGCCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
CDS-3UTR CCA 90 bp TGCTTTTGGAGAAAGCATTTGGTCACACTTCTTTATAAGACATCAGTGAGGTTGTATAGGCAGTGGTGCTaGTGCAGCCTGTGGCCAAGG +
Preference number: 4 (lower is better)
Translates to: CFWRKHLVTLLYKTSVRLYRQWC*CSLWPR
Trigger: CCTTGGCCACAGGCTGCACCAGCACCACTGCCTATA...CAACCTCACTGATGTCTTATAAAGAAGTGTGACCAAATGCTTTCTCCAAAAGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
CDS-3UTR CCA 90 bp TCAGAATACCGTAACAAAATACCACAAGTTGAGTGGTGTCACCAAGAAACTAAGCGGTCCCAATCCTGTTaGCCACAGGGACAGCACAGT +
Preference number: 4 (lower is better)
Translates to: SEYRNKIPQVEWCHQETKRSQSC*PQGQHS
Trigger: ACTGTGCTGTCCCTGTGGCCAACAGGATTGGGACCG...CTTAGTTTCTTGGTGACACCACTCAACTTGTGGTATTTTGTTACGGTATTCTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
CDS-3UTR CCA 90 bp TTTATTTCATGGTTCCTGGAGTTAAAGGTGCACCCTAACTCATTGCTTAGCAGTCCTTCTAGGATCTGGTaGACCCTGGAGTCCCGCATA +
Preference number: 4 (lower is better)
Translates to: FISWFLELKVHPNSLLSSPSRIW*TLESRI
Trigger: TATGCGGGACTCCAGGGTCCACCAGATCCTAGAAGG...ACTGCTAAGCAATGAGTTAGGGTGCACCTTTAACTCCAGGAACCATGAAATAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
CDS-3UTR TCA 90 bp CTGGCCTCCCCAGACTTTACCTGTTTAATCAGGAAAAGCTTCATTCAAGTACCCAGGCCTTGGAACCATTaGGGATGTAATGATCTCCTT +
Preference number: 4 (lower is better)
Translates to: LASPDFTCLIRKSFIQVPRPWNH*GCNDLL
Trigger: AAGGAGATCATTACATCCTCAATGGTTCCAAGGCCT...GGGTACTTGAATGAAGCTTTTCCTGATTAAACAGGTAAAGTCTGGGGAGGCCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
CDS-3UTR GCA 90 bp TCAGAATACCGTAACAAAATACCACAAGTTGAGTGGTGTCACCAAGAAACTAAGGCTTCTGGCCAAAGGTaGTCCAAACTGCTTGCGGAC +
Preference number: 4 (lower is better)
Translates to: SEYRNKIPQVEWCHQETKASGQR*SKLLAD
Trigger: GTCCGCAAGCAGTTTGGAGCACCTTTGGCCAGAAGC...CTTAGTTTCTTGGTGACACCACTCAACTTGTGGTATTTTGTTACGGTATTCTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
CDS-3UTR CCA 90 bp ATACCACAAGTTGAGTGGTGTCACCAAGAAACTAAGTCAGAATGTCACAAACGTCAAAGAGCTTGGCCATaGAACACAGGGCCACTGCAT +
Preference number: 4 (lower is better)
Translates to: IPQVEWCHQETKSECHKRQRAWP*NTGPLH
Trigger: ATGCAGTGGCCCTGTGTTCCATGGCCAAGCTCTTTG...ACGTTTGTGACATTCTGACTTAGTTTCTTGGTGACACCACTCAACTTGTGGTAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
CDS-3UTR CCA 90 bp ATACCACAAGTTGAGTGGTGTCACCAAGAAACTAAGTCAGAATGTCACAAACGTGGATCTGGTGGACCCTaGAGTCCCGCATATACTGTT +
Preference number: 4 (lower is better)
Translates to: IPQVEWCHQETKSECHKRGSGGP*SPAYTV
Trigger: AACAGTATATGCGGGACTCCAGGGTCCACCAGATCC...ACGTTTGTGACATTCTGACTTAGTTTCTTGGTGACACCACTCAACTTGTGGTAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
CDS-3UTR CCA 90 bp TTTATTTCATGGTTCCTGGAGTTAAAGGTGCACCCTAACTCATTGCTTAGCAGTATCACTCCCAGCACCTaGTTCAGTGAGGCAGTAGGA +
Preference number: 4 (lower is better)
Translates to: FISWFLELKVHPNSLLSSITPST*FSEAVG
Trigger: TCCTACTGCCTCACTGAACCAGGTGCTGGGAGTGAT...ACTGCTAAGCAATGAGTTAGGGTGCACCTTTAACTCCAGGAACCATGAAATAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120367.8
CDS-3UTR TCA 90 bp GCTGACTCCATGACGAGCTGTAAGATGCCACTGCAGGAGACTATACCTAATACTTCAAAGGCCACTTTCTaGAATCCTTTCTGTTCTTCA +
Preference number: 4 (lower is better)
Translates to: ADSMTSCKMPLQETIPNTSKATF*NPFCSS
Trigger: TGAAGAACAGAAAGGATTTCAGAAAGTGGCCTTTGA...AGTATTAGGTATAGTCTCCTGCAGTGGCATCTTACAGCTCGTCATGGAGTCAGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
CDS-3UTR GCA 90 bp TTTATTTCATGGTTCCTGGAGTTAAAGGTGCACCCTAACTCATTGCTTAGCAGTAGCCATTTCCCGAGCTaGAAAGTCAAAGGCCACTTT +
Preference number: 4 (lower is better)
Translates to: FISWFLELKVHPNSLLSSSHFPS*KVKGHF
Trigger: AAAGTGGCCTTTGACTTTGCAGCTCGGGAAATGGCT...ACTGCTAAGCAATGAGTTAGGGTGCACCTTTAACTCCAGGAACCATGAAATAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
CDS-3UTR GCA 90 bp TCAGAATACCGTAACAAAATACCACAAGTTGAGTGGTGTCACCAAGAAACTAAGTCCCAGAGAGCAGGATaGAACATTGATCCTTCCACC +
Preference number: 4 (lower is better)
Translates to: SEYRNKIPQVEWCHQETKSQRAG*NIDPST
Trigger: GGTGGAAGGATCAATGTTGCATCCTGCTCTCTGGGA...CTTAGTTTCTTGGTGACACCACTCAACTTGTGGTATTTTGTTACGGTATTCTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
CDS-3UTR CCA 90 bp TGCTTTTGGAGAAAGCATTTGGTCACACTTCTTTATAAGACATCAGTGAGGTTGTGCATCTGCAAAGCCTaGTTGCAGATAGCAAAGCAC +
Preference number: 4 (lower is better)
Translates to: CFWRKHLVTLLYKTSVRLCICKA*LQIAKH
Trigger: GTGCTTTGCTATCTGCAACCAGGCTTTGCAGATGCA...CAACCTCACTGATGTCTTATAAAGAAGTGTGACCAAATGCTTTCTCCAAAAGCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
CDS-3UTR GCA 90 bp TGCTTTTGGAGAAAGCATTTGGTCACACTTCTTTATAAGACATCAGTGAGGTTGTCCTCATCACTTCATTaGTACCTTCTAGGATCTGGT +
Preference number: 4 (lower is better)
Translates to: CFWRKHLVTLLYKTSVRLSSSLH*YLLGSG
Trigger: ACCAGATCCTAGAAGGTAGCAATGAAGTGATGAGGA...CAACCTCACTGATGTCTTATAAAGAAGTGTGACCAAATGCTTTCTCCAAAAGCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
CDS-3UTR GCA 90 bp TCAGAATACCGTAACAAAATACCACAAGTTGAGTGGTGTCACCAAGAAACTAAGTCCTCATCACTTCATTaGTACCTTCTAGGATCTGGT +
Preference number: 4 (lower is better)
Translates to: SEYRNKIPQVEWCHQETKSSSLH*YLLGSG
Trigger: ACCAGATCCTAGAAGGTAGCAATGAAGTGATGAGGA...CTTAGTTTCTTGGTGACACCACTCAACTTGTGGTATTTTGTTACGGTATTCTGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
CDS-3UTR CCA 90 bp TCAGAATACCGTAACAAAATACCACAAGTTGAGTGGTGTCACCAAGAAACTAAGACCTTGAGGTGTTCTTaGGTTAGGATAACTGAAGCA +
Preference number: 4 (lower is better)
Translates to: SEYRNKIPQVEWCHQETKTLRCS*VRITEA
Trigger: TGCTTCAGTTATCCTAACCCAAGAACACCTCAAGGT...CTTAGTTTCTTGGTGACACCACTCAACTTGTGGTATTTTGTTACGGTATTCTGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
3UTR CAA 72 bp TCATGGTTCCTGGAGTTAAAGGTGCACCCTAACTCATaGCTTAGCAGTAGGTTCCCAAATATTTATTTCATC +
Preference number: 4 (lower is better)
Translates to: SWFLELKVHPNS*LSSRFPNIYFI
Trigger: GATGAAATAAATATTTGGGAACCTACTGCTAAGCAATGAGTTAGGGTGCACCTTTAACTCCAGGAACCATGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
3UTR CAA 72 bp ATAGCCTCAGCCCTATTTTGCTTTTGGAGAAAGCATTaGGTCACACTTCTTTATAAGACATCAGTGAGGTTG +
Preference number: 4 (lower is better)
Translates to: IASALFCFWRKH*VTLLYKTSVRL
Trigger: CAACCTCACTGATGTCTTATAAAGAAGTGTGACCAAATGCTTTCTCCAAAAGCAAAATAGGGCTGAGGCTAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
CDS TCA 90 bp CCCAAGGAAGGATCGATGCAGAAGGTGATGCTCCGGTGGTGGGTCTaGGCCAGGGACTTGAGTGCCGCGCGCAGACAGCCAAAGCGCCTG +
Preference number: 5 (lower is better)
Translates to: PKEGSMQKVMLRWWV*ARDLSAARRQPKRL
Trigger: CAGGCGCTTTGGCTGTCTGCGCGCGGCACTCAAGTCCCTGGCTCAGACCCACCACCGGAGCATCACCTTCTGCATCGATCCTTCCTTGGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
CDS GCA 90 bp GCAGAAGGTGATGCTCCGGTGGTGGGTCTGAGCCAGGGACTTGAGTaGCGCGCGCAGACAGCCAAAGCGCCTGTATCCGGACCGCAACAT +
Preference number: 5 (lower is better)
Translates to: AEGDAPVVGLSQGLE*RAQTAKAPVSGPQH
Trigger: ATGTTGCGGTCCGGATACAGGCGCTTTGGCTGTCTGCGCGCGGCACTCAAGTCCCTGGCTCAGACCCACCACCGGAGCATCACCTTCTGC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
ENSMUST00000128923.8
ENSMUST00000132293.2
CDS-3UTR CAA 90 bp CCCATAGGAGCATCAAGACTGATTCCAGCTGCACACAGACTCCAGGCGAGGCTCAGATCACTGCTCGGGTaGGCTGCGAGTTCCACCCCA +
Preference number: 5 (lower is better)
Translates to: PIGASRLIPAAHRLQARLRSLLG*AASSTP
Trigger: TGGGGTGGAACTCGCAGCCAACCCGAGCAGTGATCT...GAGCCTCGCCTGGAGTCTGTGTGCAGCTGGAATCAGTCTTGATGCTCCTATGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
CDS GCA 90 bp GCACTCCTCTGTAGCAAAGAGCTTGGCCATGGAACACAGGGCCACTaGATCTTCCCGCTCTTCCTGCAAAGCCACTGCTGCAGTACGGAT +
Preference number: 5 (lower is better)
Translates to: ALLCSKELGHGTQGH*IFPLFLQSHCCSTD
Trigger: ATCCGTACTGCAGCAGTGGCTTTGCAGGAAGAGCGGGAAGATGCAGTGGCCCTGTGTTCCATGGCCAAGCTCTTTGCTACAGAGGAGTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
CDS CCA 90 bp CCACTGCTGCAGTACGGATCATCAGCCGGGAAGCAACTAGCTTGGTaGCCATATCTGCCAACTGGAATTGGAGGTACTGGCTTCTGGCCA +
Preference number: 5 (lower is better)
Translates to: PLLQYGSSAGKQLAW*PYLPTGIGGTGFWP
Trigger: TGGCCAGAAGCCAGTACCTCCAATTCCAGTTGGCAGATATGGCCACCAAGCTAGTTGCTTCCCGGCTGATGATCCGTACTGCAGCAGTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
CDS-3UTR CAA 90 bp GATCTGTCCACTGCCCTGGCCTCCCCAGACTTTACCTGTTTAATCAGGAAAAGCTCGGTCCCAATCCTGTaGGCCACAGGGACAGCACAG +
Preference number: 5 (lower is better)
Translates to: DLSTALASPDFTCLIRKSSVPIL*ATGTAQ
Trigger: CTGTGCTGTCCCTGTGGCCAACAGGATTGGGACCGA...GCTTTTCCTGATTAAACAGGTAAAGTCTGGGGAGGCCAGGGCAGTGGACAGATC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
CDS-3UTR CAA 90 bp CCCATAGGAGCATCAAGACTGATTCCAGCTGCACACAGACTCCAGGCGAGGCTCATCTGCCAACTGGAATaGGAGGTACTGGCTTCTGGC +
Preference number: 5 (lower is better)
Translates to: PIGASRLIPAAHRLQARLICQLE*EVLASG
Trigger: GCCAGAAGCCAGTACCTCCAATTCCAGTTGGCAGAT...GAGCCTCGCCTGGAGTCTGTGTGCAGCTGGAATCAGTCTTGATGCTCCTATGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
CDS CCA 90 bp AAGCCACTGCTGCAGTACGGATCATCAGCCGGGAAGCAACTAGCTTaGTGGCCATATCTGCCAACTGGAATTGGAGGTACTGGCTTCTGG +
Preference number: 5 (lower is better)
Translates to: KPLLQYGSSAGKQLA*WPYLPTGIGGTGFW
Trigger: CCAGAAGCCAGTACCTCCAATTCCAGTTGGCAGATATGGCCACCAAGCTAGTTGCTTCCCGGCTGATGATCCGTACTGCAGCAGTGGCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
CDS-3UTR CAA 90 bp AGGTCTTCTTTGGGCATGGCTCCTCAGAGCAGCCCTTCTAGCTCTGCTAAGAACTCTGTAGCAAAGAGCTaGGCCATGGAACACAGGGCC +
Preference number: 5 (lower is better)
Translates to: RSSLGMAPQSSPSSSAKNSVAKS*AMEHRA
Trigger: GGCCCTGTGTTCCATGGCCAAGCTCTTTGCTACAGA...GTTCTTAGCAGAGCTAGAAGGGCTGCTCTGAGGAGCCATGCCCAAAGAAGACCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
CDS CCA 90 bp ATCATCAGCCGGGAAGCAACTAGCTTGGTGGCCATATCTGCCAACTaGAATTGGAGGTACTGGCTTCTGGCCAAAGGTGCTCCAAACTGC +
Preference number: 5 (lower is better)
Translates to: IISREATSLVAISAN*NWRYWLLAKGAPNC
Trigger: GCAGTTTGGAGCACCTTTGGCCAGAAGCCAGTACCTCCAATTCCAGTTGGCAGATATGGCCACCAAGCTAGTTGCTTCCCGGCTGATGAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
CDS-3UTR CAA 90 bp TTGACCGCTTGTCTTTCCAGAATGAGGAAGGCAGTGTGCAGGTCTTCTTTGGGCGGTGCTCCAAACTGCTaGCGGACCTTGAGGTGTTCT +
Preference number: 5 (lower is better)
Translates to: LTACLSRMRKAVCRSSLGGAPNC*RTLRCS
Trigger: AGAACACCTCAAGGTCCGCAAGCAGTTTGGAGCACC...GCCCAAAGAAGACCTGCACACTGCCTTCCTCATTCTGGAAAGACAAGCGGTCAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
CDS-3UTR CAA 90 bp CTGAGCCGGGCTGACTCCATGACGAGCTGTAAGATGCCACTGCAGGAGACTATAATCTGCAAAGCCTGGTaGCAGATAGCAAAGCACTCC +
Preference number: 5 (lower is better)
Translates to: LSRADSMTSCKMPLQETIICKAW*QIAKHS
Trigger: GGAGTGCTTTGCTATCTGCAACCAGGCTTTGCAGAT...TATAGTCTCCTGCAGTGGCATCTTACAGCTCGTCATGGAGTCAGCCCGGCTCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
CDS-3UTR CAA 90 bp AAGTACCCAGACCCTAAGGACAAGAATCACCAAAATGCCCATAGTGTGGATCCAAGATCACTGCTCGGGTaGGCTGCGAGTTCCACCCCA +
Preference number: 5 (lower is better)
Translates to: KYPDPKDKNHQNAHSVDPRSLLG*AASSTP
Trigger: TGGGGTGGAACTCGCAGCCAACCCGAGCAGTGATCT...TGGATCCACACTATGGGCATTTTGGTGATTCTTGTCCTTAGGGTCTGGGTACTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
CDS-3UTR CAA 90 bp GCTAAGAACTCTGTTCTTGTCTCAGAACCAGCAGCGTGGCTGACAGCTCAGTCTATCTGCCAACTGGAATaGGAGGTACTGGCTTCTGGC +
Preference number: 5 (lower is better)
Translates to: AKNSVLVSEPAAWLTAQSICQLE*EVLASG
Trigger: GCCAGAAGCCAGTACCTCCAATTCCAGTTGGCAGAT...AGACTGAGCTGTCAGCCACGCTGCTGGTTCTGAGACAAGAACAGAGTTCTTAGC
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
CDS-3UTR CAA 90 bp TCTAGCTCTGCTAAGAACTCTGTTCTTGTCTCAGAACCAGCAGCGTGGCTGACATCTGTAGCAAAGAGCTaGGCCATGGAACACAGGGCC +
Preference number: 5 (lower is better)
Translates to: SSSAKNSVLVSEPAAWLTSVAKS*AMEHRA
Trigger: GGCCCTGTGTTCCATGGCCAAGCTCTTTGCTACAGA...TGTCAGCCACGCTGCTGGTTCTGAGACAAGAACAGAGTTCTTAGCAGAGCTAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
CDS-3UTR CAA 90 bp AGGTCTTCTTTGGGCATGGCTCCTCAGAGCAGCCCTTCTAGCTCTGCTAAGAACGTCCCGCATATACTGTaGAACAGCATAGTCCTTCAG +
Preference number: 5 (lower is better)
Translates to: RSSLGMAPQSSPSSSAKNVPHIL*NSIVLQ
Trigger: CTGAAGGACTATGCTGTTCAACAGTATATGCGGGAC...GTTCTTAGCAGAGCTAGAAGGGCTGCTCTGAGGAGCCATGCCCAAAGAAGACCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
CDS GCA 90 bp AACTGGAATTGGAGGTACTGGCTTCTGGCCAAAGGTGCTCCAAACTaGTTGCGGACCTTGAGGTGTTCTTGGGTTAGGATAACTGAAGCA +
Preference number: 5 (lower is better)
Translates to: NWNWRYWLLAKGAPN*LRTLRCSWVRITEA
Trigger: TGCTTCAGTTATCCTAACCCAAGAACACCTCAAGGTCCGCAAGCAGTTTGGAGCACCTTTGGCCAGAAGCCAGTACCTCCAATTCCAGTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
CDS CCA 90 bp GCATCCTCATCACTTCATTGCTACCTTCTAGGATCTGGTGGACCCTaGAGTCCCGCATATACTGTTGAACAGCATAGTCCTTCAGATAGC +
Preference number: 5 (lower is better)
Translates to: ASSSLHCYLLGSGGP*SPAYTVEQHSPSDS
Trigger: GCTATCTGAAGGACTATGCTGTTCAACAGTATATGCGGGACTCCAGGGTCCACCAGATCCTAGAAGGTAGCAATGAAGTGATGAGGATGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
CDS-3UTR CAA 90 bp GCTGACTCCATGACGAGCTGTAAGATGCCACTGCAGGAGACTATACCTAATACTATCTGCAAAGCCTGGTaGCAGATAGCAAAGCACTCC +
Preference number: 5 (lower is better)
Translates to: ADSMTSCKMPLQETIPNTICKAW*QIAKHS
Trigger: GGAGTGCTTTGCTATCTGCAACCAGGCTTTGCAGAT...AGTATTAGGTATAGTCTCCTGCAGTGGCATCTTACAGCTCGTCATGGAGTCAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
CDS-3UTR CAA 90 bp TTGACCGCTTGTCTTTCCAGAATGAGGAAGGCAGTGTGCAGGTCTTCTTTGGGCATCCTCATCACTTCATaGCTACCTTCTAGGATCTGG +
Preference number: 5 (lower is better)
Translates to: LTACLSRMRKAVCRSSLGILITS*LPSRIW
Trigger: CCAGATCCTAGAAGGTAGCAATGAAGTGATGAGGAT...GCCCAAAGAAGACCTGCACACTGCCTTCCTCATTCTGGAAAGACAAGCGGTCAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
CDS GCA 90 bp CTCCTTCTGATCCCACTCCGCCATATTGGGAGCCATTTCCCGAGCTaGAAAGTCAAAGGCCACTTTCTGAAATCCTTTCTGTTCTTCATT +
Preference number: 5 (lower is better)
Translates to: LLLIPLRHIGSHFPS*KVKGHFLKSFLFFI
Trigger: AATGAAGAACAGAAAGGATTTCAGAAAGTGGCCTTTGACTTTGCAGCTCGGGAAATGGCTCCCAATATGGCGGAGTGGGATCAGAAGGAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
CDS GCA 90 bp ATGCTTCTGATCCCACTCCGCCATATTGGGAGCCATTTCCCGAGCTaGAAAGTCAAAGGCCACTTTCTGAAATCCTTTCTGTTCTTCATT +
Preference number: 5 (lower is better)
Translates to: MLLIPLRHIGSHFPS*KVKGHFLKSFLFFI
Trigger: AATGAAGAACAGAAAGGATTTCAGAAAGTGGCCTTTGACTTTGCAGCTCGGGAAATGGCTCCCAATATGGCGGAGTGGGATCAGAAGCAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215693.2
CDS TCA 90 bp ATATTGGGAGCCATTTCCCGAGCTGCAAAGTCAAAGGCCACTTTCTaGAATCCTTTCTGTTCTTCATTTAGCCCCAAGGAAGGATCGATG +
Preference number: 5 (lower is better)
Translates to: ILGAISRAAKSKATF*NPFCSSFSPKEGSM
Trigger: CATCGATCCTTCCTTGGGGCTAAATGAAGAACAGAAAGGATTTCAGAAAGTGGCCTTTGACTTTGCAGCTCGGGAAATGGCTCCCAATAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
ENSMUST00000215693.2
CDS-3UTR CAA 90 bp TGCTTTTGGAGAAAGCATTTGGTCACACTTCTTTATAAGACATCAGTGAGGTTGGGTGCTCCAAACTGCTaGCGGACCTTGAGGTGTTCT +
Preference number: 5 (lower is better)
Translates to: CFWRKHLVTLLYKTSVRLGAPNC*RTLRCS
Trigger: AGAACACCTCAAGGTCCGCAAGCAGTTTGGAGCACC...CAACCTCACTGATGTCTTATAAAGAAGTGTGACCAAATGCTTTCTCCAAAAGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
CDS-3UTR CAA 90 bp TTTATTTCATGGTTCCTGGAGTTAAAGGTGCACCCTAACTCATTGCTTAGCAGTAGCGGTGGGCAAAATTaGTGCCTCTGTTCCTCATTT +
Preference number: 5 (lower is better)
Translates to: FISWFLELKVHPNSLLSSSGGQN*CLCSSF
Trigger: AAATGAGGAACAGAGGCACAAATTTTGCCCACCGCT...ACTGCTAAGCAATGAGTTAGGGTGCACCTTTAACTCCAGGAACCATGAAATAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
CDS-3UTR CAA 90 bp TGCTTTTGGAGAAAGCATTTGGTCACACTTCTTTATAAGACATCAGTGAGGTTGAGCGGTGGGCAAAATTaGTGCCTCTGTTCCTCATTT +
Preference number: 5 (lower is better)
Translates to: CFWRKHLVTLLYKTSVRLSGGQN*CLCSSF
Trigger: AAATGAGGAACAGAGGCACAAATTTTGCCCACCGCT...CAACCTCACTGATGTCTTATAAAGAAGTGTGACCAAATGCTTTCTCCAAAAGCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
CDS-3UTR CAA 90 bp TCAGAATACCGTAACAAAATACCACAAGTTGAGTGGTGTCACCAAGAAACTAAGGTCCCGCATATACTGTaGAACAGCATAGTCCTTCAG +
Preference number: 5 (lower is better)
Translates to: SEYRNKIPQVEWCHQETKVPHIL*NSIVLQ
Trigger: CTGAAGGACTATGCTGTTCAACAGTATATGCGGGAC...CTTAGTTTCTTGGTGACACCACTCAACTTGTGGTATTTTGTTACGGTATTCTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
CDS GCA 72 bp GATGCTCCGGTGGTGGGTCTGAGCCAGGGACTTGAGTaGCGCGCGCAGACAGCCAAAGCGCCTGTATCCGGA +
Preference number: 6 (lower is better)
Translates to: DAPVVGLSQGLE*RAQTAKAPVSG
Trigger: TCCGGATACAGGCGCTTTGGCTGTCTGCGCGCGGCACTCAAGTCCCTGGCTCAGACCCACCACCGGAGCATC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
ENSMUST00000128923.8
ENSMUST00000132293.2
CDS TCA 72 bp GGATCGATGCAGAAGGTGATGCTCCGGTGGTGGGTCTaGGCCAGGGACTTGAGTGCCGCGCGCAGACAGCCA +
Preference number: 6 (lower is better)
Translates to: GSMQKVMLRWWV*ARDLSAARRQP
Trigger: TGGCTGTCTGCGCGCGGCACTCAAGTCCCTGGCTCAGACCCACCACCGGAGCATCACCTTCTGCATCGATCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
ENSMUST00000215693.2
CDS GCA 72 bp ATGGAACACAGGGCCACTGCATCTTCCCGCTCTTCCTaGAAAGCCACTGCTGCAGTACGGATCATCAGCCGG +
Preference number: 6 (lower is better)
Translates to: MEHRATASSRSS*KATAAVRIISR
Trigger: CCGGCTGATGATCCGTACTGCAGCAGTGGCTTTGCAGGAAGAGCGGGAAGATGCAGTGGCCCTGTGTTCCAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
CDS GCA 72 bp TGTAGCAAAGAGCTTGGCCATGGAACACAGGGCCACTaGATCTTCCCGCTCTTCCTGCAAAGCCACTGCTGC +
Preference number: 6 (lower is better)
Translates to: CSKELGHGTQGH*IFPLFLQSHCC
Trigger: GCAGCAGTGGCTTTGCAGGAAGAGCGGGAAGATGCAGTGGCCCTGTGTTCCATGGCCAAGCTCTTTGCTACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
CDS CCA 72 bp CCAGGCACACATGCTTCTGATCCCACTCCGCCATATTaGGAGCCATTTCCCGAGCTGCAAAGTCAAAGGCCA +
Preference number: 6 (lower is better)
Translates to: PGTHASDPTPPY*EPFPELQSQRP
Trigger: TGGCCTTTGACTTTGCAGCTCGGGAAATGGCTCCCAATATGGCGGAGTGGGATCAGAAGCATGTGTGCCTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215693.2
CDS CCA 72 bp CGGGAAGCAACTAGCTTGGTGGCCATATCTGCCAACTaGAATTGGAGGTACTGGCTTCTGGCCAAAGGTGCT +
Preference number: 6 (lower is better)
Translates to: REATSLVAISAN*NWRYWLLAKGA
Trigger: AGCACCTTTGGCCAGAAGCCAGTACCTCCAATTCCAGTTGGCAGATATGGCCACCAAGCTAGTTGCTTCCCG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
CDS CAA 90 bp AAAGCCACTGCTGCAGTACGGATCATCAGCCGGGAAGCAACTAGCTaGGTGGCCATATCTGCCAACTGGAATTGGAGGTACTGGCTTCTG +
Preference number: 6 (lower is better)
Translates to: KATAAVRIISREATS*VAISANWNWRYWLL
Trigger: CAGAAGCCAGTACCTCCAATTCCAGTTGGCAGATATGGCCACCAAGCTAGTTGCTTCCCGGCTGATGATCCGTACTGCAGCAGTGGCTTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
CDS GCA 72 bp TGGAGGTACTGGCTTCTGGCCAAAGGTGCTCCAAACTaGTTGCGGACCTTGAGGTGTTCTTGGGTTAGGATA +
Preference number: 6 (lower is better)
Translates to: WRYWLLAKGAPN*LRTLRCSWVRI
Trigger: TATCCTAACCCAAGAACACCTCAAGGTCCGCAAGCAGTTTGGAGCACCTTTGGCCAGAAGCCAGTACCTCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
CDS GCA 72 bp CAACTGGAATTGGAGGTACTGGCTTCTGGCCAAAGGTaGTCCAAACTGCTTGCGGACCTTGAGGTGTTCTTG +
Preference number: 6 (lower is better)
Translates to: QLELEVLASGQR*SKLLADLEVFL
Trigger: CAAGAACACCTCAAGGTCCGCAAGCAGTTTGGAGCACCTTTGGCCAGAAGCCAGTACCTCCAATTCCAGTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
CDS CAA 90 bp TCATTTAGCCCCAAGGAAGCTGTGAACAGGACCAGACATATTCAATaGATCGATGCAGAAGGTGATGCTCCGGTGGTGGGTCTGAGCCAG +
Preference number: 6 (lower is better)
Translates to: SFSPKEAVNRTRHIQ*IDAEGDAPVVGLSQ
Trigger: CTGGCTCAGACCCACCACCGGAGCATCACCTTCTGCATCGATCAATTGAATATGTCTGGTCCTGTTCACAGCTTCCTTGGGGCTAAATGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000128923.8
ENSMUST00000132293.2
CDS CAA 72 bp CCCAAGGAAGCTGTGAACAGGACCAGACATATTCAATaGATCGATGCAGAAGGTGATGCTCCGGTGGTGGGT +
Preference number: 6 (lower is better)
Translates to: PKEAVNRTRHIQ*IDAEGDAPVVG
Trigger: ACCCACCACCGGAGCATCACCTTCTGCATCGATCAATTGAATATGTCTGGTCCTGTTCACAGCTTCCTTGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000128923.8
ENSMUST00000132293.2
CDS TCA 72 bp ACCTTGAGGTGTTCTTGGGTTAGGATAACTGAAGCATaGGCGGCTCCCAGAGAGCAGGATGCAACATTGATC +
Preference number: 6 (lower is better)
Translates to: TLRCSWVRITEA*AAPREQDATLI
Trigger: GATCAATGTTGCATCCTGCTCTCTGGGAGCCGCTCATGCTTCAGTTATCCTAACCCAAGAACACCTCAAGGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
CDS CCA 72 bp TCACTTCATTGCTACCTTCTAGGATCTGGTGGACCCTaGAGTCCCGCATATACTGTTGAACAGCATAGTCCT +
Preference number: 6 (lower is better)
Translates to: SLHCYLLGSGGP*SPAYTVEQHSP
Trigger: AGGACTATGCTGTTCAACAGTATATGCGGGACTCCAGGGTCCACCAGATCCTAGAAGGTAGCAATGAAGTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060513.8
ENSMUST00000120367.8
CDS TCA 72 bp ACCATTGAGGATGTAATGATCTCCTTGTTGTTTAGCTaGGGTCAGAAGAGATGCAGCATCACTCCCAGCACC +
Preference number: 6 (lower is better)
Translates to: TIEDVMISLLFS*GQKRCSITPST
Trigger: GGTGCTGGGAGTGATGCTGCATCTCTTCTGACCTCAGCTAAACAACAAGGAGATCATTACATCCTCAATGGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120367.8