Pregenerated sensors for ABRAXAS1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000035234Ensembl transcript IDs: ENSMUST00000044535.14, ENSMUST00000055245.13, ENSMUST00000117364.8, ENSMUST00000129358.2, ENSMUST00000153302.8, ENSMUST00000200657.5
Found 116 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AAGCCTTGTCTTGGTGCCTGCTGCGGGACGCTGCCACAGAAGGTCTaGTTTCTGTCTCCAGCAGCCGTGGTCTCTTCACAGACCCCTGGT | + |
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Preference number: 1 (lower is better) Translates to: KPCLGACCGTLPQKV*FLSPAAVVSSQTPG Trigger: ACCAGGGGTCTGTGAAGAGACCACGGCTGCTGGAGACAGAAAGCAGACCTTCTGTGGCAGCGTCCCGCAGCAGGCACCAAGACAAGGCTT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000044535.14 ENSMUST00000153302.8 |
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| 3UTR CCA 90 bp | GGTCTGCTTTCTGTCTCCAGCAGCCGTGGTCTCTTCACAGACCCCTaGTCGTGTGTGTCTAGAGCCTTCCGTTTACGTAGCTGGGCTGTG | + |
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Preference number: 1 (lower is better) Translates to: GLLSVSSSRGLFTDP*SCVSRAFRLRSWAV Trigger: CACAGCCCAGCTACGTAAACGGAAGGCTCTAGACACACACGACCAGGGGTCTGTGAAGAGACCACGGCTGCTGGAGACAGAAAGCAGACC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000044535.14 ENSMUST00000153302.8 |
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| 3UTR CCA 90 bp | ACAGACCCCTGGTCGTGTGTGTCTAGAGCCTTCCGTTTACGTAGCTaGGCTGTGGGCACTGGACTAGCTTCAGGGCTGTACACATACTCT | + |
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Preference number: 1 (lower is better) Translates to: TDPWSCVSRAFRLRS*AVGTGLASGLYTYS Trigger: AGAGTATGTGTACAGCCCTGAAGCTAGTCCAGTGCCCACAGCCCAGCTACGTAAACGGAAGGCTCTAGACACACACGACCAGGGGTCTGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000044535.14 ENSMUST00000153302.8 |
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| 3UTR CCA 90 bp | TTATTGGCACACACCTTTAATCTCAGCACAGGAGGCAGAGGGAGGTaGATATTTGTGAGATTTAGAACACCCAGAGCTACACAGAGAGAC | + |
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Preference number: 1 (lower is better) Translates to: LLAHTFNLSTGGRGR*IFVRFRTPRATQRD Trigger: GTCTCTCTGTGTAGCTCTGGGTGTTCTAAATCTCACAAATATCCACCTCCCTCTGCCTCCTGTGCTGAGATTAAAGGTGTGTGCCAATAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044535.14 ENSMUST00000055245.13 |
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| 3UTR TCA 90 bp | CCCTCGACAATTTGGGGGTGGGAGGAGCGGAAAGGTTTGTGGCTTTaGAATAAAATCATCTTATTGGCACACACCTTTAATCTCAGCACA | + |
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Preference number: 1 (lower is better) Translates to: PSTIWGWEERKGLWL*NKIILLAHTFNLST Trigger: TGTGCTGAGATTAAAGGTGTGTGCCAATAAGATGATTTTATTTCAAAGCCACAAACCTTTCCGCTCCTCCCACCCCCAAATTGTCGAGGG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000044535.14 ENSMUST00000055245.13 |
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| 3UTR GCA 90 bp | GGGTTTCTCTGGACATTCTTCTCTCCTGCTCCTGTAGCCCGTGCTTaGTGGGTTCTTCTAACTTCTTTTAATTGGTTTACATCCATCAAT | + |
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Preference number: 1 (lower is better) Translates to: GFLWTFFSPAPVARA*WVLLTSFNWFTSIN Trigger: ATTGATGGATGTAAACCAATTAAAAGAAGTTAGAAGAACCCAGCAAGCACGGGCTACAGGAGCAGGAGAGAAGAATGTCCAGAGAAACCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000044535.14 ENSMUST00000153302.8 |
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| 3UTR CCA 90 bp | TTTCTCTGGACATTCTTCTCTCCTGCTCCTGTAGCCCGTGCTTGCTaGGTTCTTCTAACTTCTTTTAATTGGTTTACATCCATCAATAGT | + |
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Preference number: 1 (lower is better) Translates to: FLWTFFSPAPVARAC*VLLTSFNWFTSINS Trigger: ACTATTGATGGATGTAAACCAATTAAAAGAAGTTAGAAGAACCCAGCAAGCACGGGCTACAGGAGCAGGAGAGAAGAATGTCCAGAGAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000044535.14 ENSMUST00000153302.8 |
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| 3UTR CCA 90 bp | GCTCCTGTAGCCCGTGCTTGCTGGGTTCTTCTAACTTCTTTTAATTaGTTTACATCCATCAATAGTTTCTCTACTTCTCGTTCACTTTGT | + |
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Preference number: 1 (lower is better) Translates to: APVARACWVLLTSFN*FTSINSFSTSRSLC Trigger: ACAAAGTGAACGAGAAGTAGAGAAACTATTGATGGATGTAAACCAATTAAAAGAAGTTAGAAGAACCCAGCAAGCACGGGCTACAGGAGC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000153302.8 |
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| 3UTR CCA 90 bp | TATATGCCATGGTCAATATATGAAGTCAGGAAAGGTTGTGAGAGTTaGTTCTTTCCTTCACTGTGGGAGTTTCAAAAATCCAACTCAGGT | + |
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Preference number: 1 (lower is better) Translates to: YMPWSIYEVRKGCES*FFPSLWEFQKSNSG Trigger: ACCTGAGTTGGATTTTTGAAACTCCCACAGTGAAGGAAAGAACCAACTCTCACAACCTTTCCTGACTTCATATATTGACCATGGCATATA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000044535.14 ENSMUST00000055245.13 ENSMUST00000117364.8 ENSMUST00000153302.8 ENSMUST00000200657.5 |
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| 3UTR-3UTR TCA 90 bp | TCTTCACAGACCCCTGGTCGTGTGTGTCTAGAGCCTTCCGTTTACGTAGCTGGGCAGCTGAACCAAGTCTaGGGCCCGCCTGGGCTTACG | + |
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Preference number: 2 (lower is better) Translates to: SSQTPGRVCLEPSVYVAGQLNQV*GPPGLT Trigger: CGTAAGCCCAGGCGGGCCTCAGACTTGGTTCAGCTG...CCCAGCTACGTAAACGGAAGGCTCTAGACACACACGACCAGGGGTCTGTGAAGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000044535.14 ENSMUST00000153302.8 |
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| 3UTR-3UTR GCA 90 bp | CGGGACGCTGCCACAGAAGGTCTGCTTTCTGTCTCCAGCAGCCGTGGTCTCTTCCTGCCACAGAAGGTCTaGTTTCTGTCTCCAGCAGCC | + |
|
Preference number: 2 (lower is better) Translates to: RDAATEGLLSVSSSRGLFLPQKV*FLSPAA Trigger: GGCTGCTGGAGACAGAAAGCAGACCTTCTGTGGCAG...GAAGAGACCACGGCTGCTGGAGACAGAAAGCAGACCTTCTGTGGCAGCGTCCCG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044535.14 ENSMUST00000153302.8 |
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| 3UTR-3UTR CCA 90 bp | TATCTAGGCTGCTTGAGGAAGCCTTGTCTTGGTGCCTGCTGCGGGACGCTGCCATGTCTCCAGCAGCCGTaGTCTCTTCACAGACCCCTG | + |
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Preference number: 2 (lower is better) Translates to: YLGCLRKPCLGACCGTLPCLQQP*SLHRPL Trigger: CAGGGGTCTGTGAAGAGACCACGGCTGCTGGAGACA...TGGCAGCGTCCCGCAGCAGGCACCAAGACAAGGCTTCCTCAAGCAGCCTAGATA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000044535.14 ENSMUST00000153302.8 |
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| 3UTR-3UTR CCA 90 bp | CGGGACGCTGCCACAGAAGGTCTGCTTTCTGTCTCCAGCAGCCGTGGTCTCTTCTTTCCCTCGACAATTTaGGGGTGGGAGGAGCGGAAA | + |
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Preference number: 2 (lower is better) Translates to: RDAATEGLLSVSSSRGLFFPSTI*GWEERK Trigger: TTTCCGCTCCTCCCACCCCCAAATTGTCGAGGGAAA...GAAGAGACCACGGCTGCTGGAGACAGAAAGCAGACCTTCTGTGGCAGCGTCCCG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044535.14 |
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| 3UTR-3UTR CCA 90 bp | TTTCTGTCTCCAGCAGCCGTGGTCTCTTCACAGACCCCTGGTCGTGTGTGTCTACTCTTCACAGACCCCTaGTCGTGTGTGTCTAGAGCC | + |
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Preference number: 2 (lower is better) Translates to: FLSPAAVVSSQTPGRVCLLFTDP*SCVSRA Trigger: GGCTCTAGACACACACGACCAGGGGTCTGTGAAGAG...TAGACACACACGACCAGGGGTCTGTGAAGAGACCACGGCTGCTGGAGACAGAAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000044535.14 ENSMUST00000153302.8 |
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| 3UTR-3UTR CCA 90 bp | CGGGACGCTGCCACAGAAGGTCTGCTTTCTGTCTCCAGCAGCCGTGGTCTCTTCGTTCCAGGCAGTGAGTaGAGCAGCTTTCTGTTGTTA | + |
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Preference number: 2 (lower is better) Translates to: RDAATEGLLSVSSSRGLFVPGSE*SSFLLL Trigger: TAACAACAGAAAGCTGCTCCACTCACTGCCTGGAAC...GAAGAGACCACGGCTGCTGGAGACAGAAAGCAGACCTTCTGTGGCAGCGTCCCG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000153302.8 |
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| 3UTR-3UTR CCA 90 bp | CTAGGCTGCTTGAGGAAGCCTTGTCTTGGTGCCTGCTGCGGGACGCTGCCACAGAAAGGTTGTGAGAGTTaGTTCTTTCCTTCACTGTGG | + |
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Preference number: 2 (lower is better) Translates to: LGCLRKPCLGACCGTLPQKGCES*FFPSLW Trigger: CCACAGTGAAGGAAAGAACCAACTCTCACAACCTTT...CTGTGGCAGCGTCCCGCAGCAGGCACCAAGACAAGGCTTCCTCAAGCAGCCTAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044535.14 ENSMUST00000153302.8 |
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| 3UTR-3UTR CCA 90 bp | TTCCCTCGACAATTTGGGGGTGGGAGGAGCGGAAAGGTTTGTGGCTTTGAAATAGAGGAAGCCTTGTCTTaGTGCCTGCTGCGGGACGCT | + |
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Preference number: 2 (lower is better) Translates to: FPRQFGGGRSGKVCGFEIEEALS*CLLRDA Trigger: AGCGTCCCGCAGCAGGCACCAAGACAAGGCTTCCTC...TATTTCAAAGCCACAAACCTTTCCGCTCCTCCCACCCCCAAATTGTCGAGGGAA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000044535.14 |
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| 3UTR-3UTR CCA 90 bp | GACGCTGCCACAGAAGGTCTGCTTTCTGTCTCCAGCAGCCGTGGTCTCTTCACATCCTGTGGGTTTCTCTaGACATTCTTCTCTCCTGCT | + |
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Preference number: 2 (lower is better) Translates to: DAATEGLLSVSSSRGLFTSCGFL*TFFSPA Trigger: AGCAGGAGAGAAGAATGTCCAGAGAAACCCACAGGA...TGTGAAGAGACCACGGCTGCTGGAGACAGAAAGCAGACCTTCTGTGGCAGCGTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044535.14 ENSMUST00000153302.8 |
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| 3UTR-3UTR GCA 90 bp | CCCATCTCTATGTCTATATCTAGGCTGCTTGAGGAAGCCTTGTCTTGGTGCCTGCTGCCACAGAAGGTCTaGTTTCTGTCTCCAGCAGCC | + |
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Preference number: 2 (lower is better) Translates to: PISMSISRLLEEALSWCLLPQKV*FLSPAA Trigger: GGCTGCTGGAGACAGAAAGCAGACCTTCTGTGGCAG...CAGGCACCAAGACAAGGCTTCCTCAAGCAGCCTAGATATAGACATAGAGATGGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044535.14 ENSMUST00000153302.8 |
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| 3UTR-3UTR GCA 90 bp | GCTCCTGTAGCCCGTGCTTGCTGGGTTCTTCTAACTTCTTTTAATTGGTTTACAGAAGCCTTGTCTTGGTaGCTGCTGCGGGACGCTGCC | + |
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Preference number: 2 (lower is better) Translates to: APVARACWVLLTSFNWFTEALSW*LLRDAA Trigger: GGCAGCGTCCCGCAGCAGGCACCAAGACAAGGCTTC...TGTAAACCAATTAAAAGAAGTTAGAAGAACCCAGCAAGCACGGGCTACAGGAGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000044535.14 ENSMUST00000153302.8 |
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| 3UTR-3UTR TCA 90 bp | GGTCAATATATGAAGTCAGGAAAGGTTGTGAGAGTTGGTTCTTTCCTTCACTGTCAGCTGAACCAAGTCTaGGGCCCGCCTGGGCTTACG | + |
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Preference number: 2 (lower is better) Translates to: GQYMKSGKVVRVGSFLHCQLNQV*GPPGLT Trigger: CGTAAGCCCAGGCGGGCCTCAGACTTGGTTCAGCTG...ACAGTGAAGGAAAGAACCAACTCTCACAACCTTTCCTGACTTCATATATTGACC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000044535.14 ENSMUST00000055245.13 ENSMUST00000117364.8 ENSMUST00000153302.8 ENSMUST00000200657.5 |
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| 3UTR-3UTR TCA 90 bp | TTTCTGTCTCCAGCAGCCGTGGTCTCTTCACAGACCCCTGGTCGTGTGTGTCTACCACCACAGTCTTTCTaGCATTTGAAAGAACCTTCT | + |
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Preference number: 2 (lower is better) Translates to: FLSPAAVVSSQTPGRVCLPPQSF*HLKEPS Trigger: AGAAGGTTCTTTCAAATGTCAGAAAGACTGTGGTGG...TAGACACACACGACCAGGGGTCTGTGAAGAGACCACGGCTGCTGGAGACAGAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000153302.8 |
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| 3UTR-3UTR TCA 90 bp | TCCCAGATTGGTAACCACCAATGGTACCCTATGAAAAAGCCCCCTTTGAGGTTTGCGTGTTCCAGGCAGTaGGTGGAGCAGCTTTCTGTT | + |
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Preference number: 2 (lower is better) Translates to: SQIGNHQWYPMKKPPLRFACSRQ*VEQLSV Trigger: AACAGAAAGCTGCTCCACTCACTGCCTGGAACACGC...AAACCTCAAAGGGGGCTTTTTCATAGGGTACCATTGGTGGTTACCAATCTGGGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000129358.2 ENSMUST00000153302.8 |
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| 3UTR-3UTR TCA 90 bp | TCTTCACAGACCCCTGGTCGTGTGTGTCTAGAGCCTTCCGTTTACGTAGCTGGGCTTCTTTCCAGGTTGTaGAAAAAGGCTAGTTTCTCT | + |
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Preference number: 2 (lower is better) Translates to: SSQTPGRVCLEPSVYVAGLLSRL*KKASFS Trigger: AGAGAAACTAGCCTTTTTTCACAACCTGGAAAGAAG...CCCAGCTACGTAAACGGAAGGCTCTAGACACACACGACCAGGGGTCTGTGAAGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000044535.14 ENSMUST00000153302.8 |
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| 3UTR-3UTR TCA 90 bp | CAATATATGAAGTCAGGAAAGGTTGTGAGAGTTGGTTCTTTCCTTCACTGTGGGGCGTGTTCCAGGCAGTaGGTGGAGCAGCTTTCTGTT | + |
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Preference number: 2 (lower is better) Translates to: QYMKSGKVVRVGSFLHCGACSRQ*VEQLSV Trigger: AACAGAAAGCTGCTCCACTCACTGCCTGGAACACGC...CCCACAGTGAAGGAAAGAACCAACTCTCACAACCTTTCCTGACTTCATATATTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000153302.8 |
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| 3UTR-3UTR CCA 90 bp | CCCATCTCTATGTCTATATCTAGGCTGCTTGAGGAAGCCTTGTCTTGGTGCCTGGTAGCCCGTGCTTGCTaGGTTCTTCTAACTTCTTTT | + |
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Preference number: 2 (lower is better) Translates to: PISMSISRLLEEALSWCLVARAC*VLLTSF Trigger: AAAAGAAGTTAGAAGAACCCAGCAAGCACGGGCTAC...CAGGCACCAAGACAAGGCTTCCTCAAGCAGCCTAGATATAGACATAGAGATGGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044535.14 ENSMUST00000153302.8 |
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| 3UTR-3UTR GCA 90 bp | TTCCCTCGACAATTTGGGGGTGGGAGGAGCGGAAAGGTTTGTGGCTTTGAAATAGCTTACGAACATCTGTaGTTCTTTCCAGGTTGTGAA | + |
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Preference number: 2 (lower is better) Translates to: FPRQFGGGRSGKVCGFEIAYEHL*FFPGCE Trigger: TTCACAACCTGGAAAGAAGCACAGATGTTCGTAAGC...TATTTCAAAGCCACAAACCTTTCCGCTCCTCCCACCCCCAAATTGTCGAGGGAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000044535.14 ENSMUST00000055245.13 |
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| 3UTR-3UTR GCA 90 bp | AATAAAATCATCTTATTGGCACACACCTTTAATCTCAGCACAGGAGGCAGAGGGGACATTCTTCTCTCCTaGTCCTGTAGCCCGTGCTTG | + |
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Preference number: 2 (lower is better) Translates to: NKIILLAHTFNLSTGGRGDILLS*SCSPCL Trigger: CAAGCACGGGCTACAGGAGCAGGAGAGAAGAATGTC...CCCTCTGCCTCCTGTGCTGAGATTAAAGGTGTGTGCCAATAAGATGATTTTATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044535.14 |
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| 3UTR-3UTR CCA 90 bp | CCCATCTCTATGTCTATATCTAGGCTGCTTGAGGAAGCCTTGTCTTGGTGCCTGAAAGGTTGTGAGAGTTaGTTCTTTCCTTCACTGTGG | + |
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Preference number: 2 (lower is better) Translates to: PISMSISRLLEEALSWCLKGCES*FFPSLW Trigger: CCACAGTGAAGGAAAGAACCAACTCTCACAACCTTT...CAGGCACCAAGACAAGGCTTCCTCAAGCAGCCTAGATATAGACATAGAGATGGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044535.14 ENSMUST00000153302.8 |
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| 3UTR-3UTR CCA 90 bp | TCCCAGATTGGTAACCACCAATGGTACCCTATGAAAAAGCCCCCTTTGAGGTTTGTTCCAGGCAGTGAGTaGAGCAGCTTTCTGTTGTTA | + |
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Preference number: 2 (lower is better) Translates to: SQIGNHQWYPMKKPPLRFVPGSE*SSFLLL Trigger: TAACAACAGAAAGCTGCTCCACTCACTGCCTGGAAC...AAACCTCAAAGGGGGCTTTTTCATAGGGTACCATTGGTGGTTACCAATCTGGGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000129358.2 ENSMUST00000153302.8 |
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| 3UTR-3UTR TCA 90 bp | TCCCAGATTGGTAACCACCAATGGTACCCTATGAAAAAGCCCCCTTTGAGGTTTCCACCACAGTCTTTCTaGCATTTGAAAGAACCTTCT | + |
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Preference number: 2 (lower is better) Translates to: SQIGNHQWYPMKKPPLRFPPQSF*HLKEPS Trigger: AGAAGGTTCTTTCAAATGTCAGAAAGACTGTGGTGG...AAACCTCAAAGGGGGCTTTTTCATAGGGTACCATTGGTGGTTACCAATCTGGGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000129358.2 ENSMUST00000153302.8 |
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| 3UTR-3UTR GCA 90 bp | TTCCCTCGACAATTTGGGGGTGGGAGGAGCGGAAAGGTTTGTGGCTTTGAAATAGGGGTTTCATGTATATaGCATGGTCAATATATGAAG | + |
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Preference number: 2 (lower is better) Translates to: FPRQFGGGRSGKVCGFEIGVSCI*HGQYMK Trigger: CTTCATATATTGACCATGGCATATACATGAAACCCC...TATTTCAAAGCCACAAACCTTTCCGCTCCTCCCACCCCCAAATTGTCGAGGGAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000044535.14 ENSMUST00000055245.13 |
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| 3UTR-3UTR TCA 90 bp | TCCCAGATTGGTAACCACCAATGGTACCCTATGAAAAAGCCCCCTTTGAGGTTTAGTCTTTCTGACATTTaGAAGAACCTTCTTCAGTGC | + |
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Preference number: 2 (lower is better) Translates to: SQIGNHQWYPMKKPPLRFSLSDI*KNLLQC Trigger: GCACTGAAGAAGGTTCTTTCAAATGTCAGAAAGACT...AAACCTCAAAGGGGGCTTTTTCATAGGGTACCATTGGTGGTTACCAATCTGGGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000129358.2 ENSMUST00000153302.8 |
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| 3UTR CAA 90 bp | AACCAAAACCAAACACCTTTGGACTGGAGCTCAGTGGTAGAGAAGTaGCCTACCATTCACAGTTCCCAAACCACAAGCTTATATATGTAT | + |
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Preference number: 2 (lower is better) Translates to: NQNQTPLDWSSVVEK*PTIHSSQTTSLYMY Trigger: ATACATATATAAGCTTGTGGTTTGGGAACTGTGAATGGTAGGCAACTTCTCTACCACTGAGCTCCAGTCCAAAGGTGTTTGGTTTTGGTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000044535.14 ENSMUST00000055245.13 |
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| 3UTR-3UTR TCA 90 bp | GGTCAATATATGAAGTCAGGAAAGGTTGTGAGAGTTGGTTCTTTCCTTCACTGTAGTCAGGAAAGGTTGTaGGAGTTGGTTCTTTCCTTC | + |
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Preference number: 2 (lower is better) Translates to: GQYMKSGKVVRVGSFLHCSQERL*ELVLSF Trigger: GAAGGAAAGAACCAACTCTCACAACCTTTCCTGACT...ACAGTGAAGGAAAGAACCAACTCTCACAACCTTTCCTGACTTCATATATTGACC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000044535.14 ENSMUST00000055245.13 ENSMUST00000117364.8 ENSMUST00000153302.8 ENSMUST00000200657.5 |
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| 3UTR-3UTR GCA 90 bp | AGGAAAGGTTGTGAGAGTTGGTTCTTTCCTTCACTGTGGGAGTTTCAAAAATCCGCTTACGAACATCTGTaGTTCTTTCCAGGTTGTGAA | + |
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Preference number: 2 (lower is better) Translates to: RKGCESWFFPSLWEFQKSAYEHL*FFPGCE Trigger: TTCACAACCTGGAAAGAAGCACAGATGTTCGTAAGC...GGATTTTTGAAACTCCCACAGTGAAGGAAAGAACCAACTCTCACAACCTTTCCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000044535.14 ENSMUST00000055245.13 ENSMUST00000117364.8 ENSMUST00000153302.8 ENSMUST00000200657.5 |
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| 3UTR-3UTR GCA 90 bp | GGTCAATATATGAAGTCAGGAAAGGTTGTGAGAGTTGGTTCTTTCCTTCACTGTGCTTACGAACATCTGTaGTTCTTTCCAGGTTGTGAA | + |
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Preference number: 2 (lower is better) Translates to: GQYMKSGKVVRVGSFLHCAYEHL*FFPGCE Trigger: TTCACAACCTGGAAAGAAGCACAGATGTTCGTAAGC...ACAGTGAAGGAAAGAACCAACTCTCACAACCTTTCCTGACTTCATATATTGACC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000044535.14 ENSMUST00000055245.13 ENSMUST00000117364.8 ENSMUST00000153302.8 ENSMUST00000200657.5 |
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| 3UTR-3UTR GCA 90 bp | ATAACCCAGTTGATCAGACATTCCCAGATTGGTAACCACCAATGGTACCCTATGTTTCTGTGGAGTAACTaGTCTCTAAATGTCATGATC | + |
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Preference number: 2 (lower is better) Translates to: ITQLIRHSQIGNHQWYPMFLWSN*SLNVMI Trigger: GATCATGACATTTAGAGAGCAGTTACTCCACAGAAA...CATAGGGTACCATTGGTGGTTACCAATCTGGGAATGTCTGATCAACTGGGTTAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000129358.2 ENSMUST00000153302.8 |
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| 3UTR-3UTR CCA 90 bp | GGTCAATATATGAAGTCAGGAAAGGTTGTGAGAGTTGGTTCTTTCCTTCACTGTAAAGGTTGTGAGAGTTaGTTCTTTCCTTCACTGTGG | + |
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Preference number: 2 (lower is better) Translates to: GQYMKSGKVVRVGSFLHCKGCES*FFPSLW Trigger: CCACAGTGAAGGAAAGAACCAACTCTCACAACCTTT...ACAGTGAAGGAAAGAACCAACTCTCACAACCTTTCCTGACTTCATATATTGACC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000044535.14 ENSMUST00000055245.13 ENSMUST00000117364.8 ENSMUST00000153302.8 ENSMUST00000200657.5 |
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| 3UTR-3UTR TCA 90 bp | GGTCAATATATGAAGTCAGGAAAGGTTGTGAGAGTTGGTTCTTTCCTTCACTGTCTTCTTTCCAGGTTGTaGAAAAAGGCTAGTTTCTCT | + |
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Preference number: 2 (lower is better) Translates to: GQYMKSGKVVRVGSFLHCLLSRL*KKASFS Trigger: AGAGAAACTAGCCTTTTTTCACAACCTGGAAAGAAG...ACAGTGAAGGAAAGAACCAACTCTCACAACCTTTCCTGACTTCATATATTGACC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000044535.14 ENSMUST00000055245.13 ENSMUST00000117364.8 ENSMUST00000153302.8 ENSMUST00000200657.5 |
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| 3UTR-3UTR GCA 90 bp | CAATATATGAAGTCAGGAAAGGTTGTGAGAGTTGGTTCTTTCCTTCACTGTGGGTTTCTGTGGAGTAACTaGTCTCTAAATGTCATGATC | + |
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Preference number: 2 (lower is better) Translates to: QYMKSGKVVRVGSFLHCGFLWSN*SLNVMI Trigger: GATCATGACATTTAGAGAGCAGTTACTCCACAGAAA...CCCACAGTGAAGGAAAGAACCAACTCTCACAACCTTTCCTGACTTCATATATTG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000153302.8 |
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| 3UTR GCA 72 bp | TATCTAGGCTGCTTGAGGAAGCCTTGTCTTGGTGCCTaGTGCGGGACGCTGCCACAGAAGGTCTGCTTTCTG | + |
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Preference number: 3 (lower is better) Translates to: YLGCLRKPCLGA*CGTLPQKVCFL Trigger: CAGAAAGCAGACCTTCTGTGGCAGCGTCCCGCAGCAGGCACCAAGACAAGGCTTCCTCAAGCAGCCTAGATA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044535.14 ENSMUST00000153302.8 |
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| 3UTR CCA 72 bp | ATGTCTATATCTAGGCTGCTTGAGGAAGCCTTGTCTTaGTGCCTGCTGCGGGACGCTGCCACAGAAGGTCTG | + |
|
Preference number: 3 (lower is better) Translates to: MSISRLLEEALS*CLLRDAATEGL Trigger: CAGACCTTCTGTGGCAGCGTCCCGCAGCAGGCACCAAGACAAGGCTTCCTCAAGCAGCCTAGATATAGACAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044535.14 ENSMUST00000153302.8 |
||
| 3UTR-3UTR CAA 90 bp | TATCTAGGCTGCTTGAGGAAGCCTTGTCTTGGTGCCTGCTGCGGGACGCTGCCACAAAACCAAACACCTTaGGACTGGAGCTCAGTGGTA | + |
|
Preference number: 3 (lower is better) Translates to: YLGCLRKPCLGACCGTLPQNQTP*DWSSVV Trigger: TACCACTGAGCTCCAGTCCAAAGGTGTTTGGTTTTG...TGGCAGCGTCCCGCAGCAGGCACCAAGACAAGGCTTCCTCAAGCAGCCTAGATA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044535.14 |
||
| 3UTR-3UTR CAA 90 bp | CCCATCTCTATGTCTATATCTAGGCTGCTTGAGGAAGCCTTGTCTTGGTGCCTGCTTTCCCTCGACAATTaGGGGGTGGGAGGAGCGGAA | + |
|
Preference number: 3 (lower is better) Translates to: PISMSISRLLEEALSWCLLSLDN*GVGGAE Trigger: TTCCGCTCCTCCCACCCCCAAATTGTCGAGGGAAAG...CAGGCACCAAGACAAGGCTTCCTCAAGCAGCCTAGATATAGACATAGAGATGGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000044535.14 |
||
| 3UTR TCA 72 bp | ATCTCAGCACAGGAGGCAGAGGGAGGTGGATATTTGTaGGATTTAGAACACCCAGAGCTACACAGAGAGACC | + |
|
Preference number: 3 (lower is better) Translates to: ISAQEAEGGGYL*DLEHPELHRET Trigger: GGTCTCTCTGTGTAGCTCTGGGTGTTCTAAATCTCACAAATATCCACCTCCCTCTGCCTCCTGTGCTGAGAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044535.14 ENSMUST00000055245.13 |
||
| 3UTR-3UTR CAA 90 bp | TTCCCTCGACAATTTGGGGGTGGGAGGAGCGGAAAGGTTTGTGGCTTTGAAATACAAAACCAAACACCTTaGGACTGGAGCTCAGTGGTA | + |
|
Preference number: 3 (lower is better) Translates to: FPRQFGGGRSGKVCGFEIQNQTP*DWSSVV Trigger: TACCACTGAGCTCCAGTCCAAAGGTGTTTGGTTTTG...TATTTCAAAGCCACAAACCTTTCCGCTCCTCCCACCCCCAAATTGTCGAGGGAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000044535.14 ENSMUST00000055245.13 |
||
| 3UTR-3UTR CAA 90 bp | TCCCAGATTGGTAACCACCAATGGTACCCTATGAAAAAGCCCCCTTTGAGGTTTTGGAGCAGCTTTCTGTaGTTATACTCGGTGTTAACA | + |
|
Preference number: 3 (lower is better) Translates to: SQIGNHQWYPMKKPPLRFWSSFL*LYSVLT Trigger: TGTTAACACCGAGTATAACAACAGAAAGCTGCTCCA...AAACCTCAAAGGGGGCTTTTTCATAGGGTACCATTGGTGGTTACCAATCTGGGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000129358.2 ENSMUST00000153302.8 |
||
| 3UTR GCA 72 bp | TGGACATTCTTCTCTCCTGCTCCTGTAGCCCGTGCTTaGTGGGTTCTTCTAACTTCTTTTAATTGGTTTACA | + |
|
Preference number: 3 (lower is better) Translates to: WTFFSPAPVARA*WVLLTSFNWFT Trigger: TGTAAACCAATTAAAAGAAGTTAGAAGAACCCAGCAAGCACGGGCTACAGGAGCAGGAGAGAAGAATGTCCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000044535.14 ENSMUST00000153302.8 |
||
| 3UTR CCA 72 bp | ACATTCTTCTCTCCTGCTCCTGTAGCCCGTGCTTGCTaGGTTCTTCTAACTTCTTTTAATTGGTTTACATCC | + |
|
Preference number: 3 (lower is better) Translates to: TFFSPAPVARAC*VLLTSFNWFTS Trigger: GGATGTAAACCAATTAAAAGAAGTTAGAAGAACCCAGCAAGCACGGGCTACAGGAGCAGGAGAGAAGAATGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000044535.14 ENSMUST00000153302.8 |
||
| 3UTR CCA 72 bp | CAGTTGATCAGACATTCCCAGATTGGTAACCACCAATaGTACCCTATGAAAAAGCCCCCTTTGAGGTTTATA | + |
|
Preference number: 3 (lower is better) Translates to: QLIRHSQIGNHQ*YPMKKPPLRFI Trigger: TATAAACCTCAAAGGGGGCTTTTTCATAGGGTACCATTGGTGGTTACCAATCTGGGAATGTCTGATCAACTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000129358.2 ENSMUST00000153302.8 |
||
| 3UTR-3UTR CAA 90 bp | GCTCCTGTAGCCCGTGCTTGCTGGGTTCTTCTAACTTCTTTTAATTGGTTTACAAAATGTTCGCAAAGCTaGACAAAGAAGGATGTTCTC | + |
|
Preference number: 3 (lower is better) Translates to: APVARACWVLLTSFNWFTKCSQS*TKKDVL Trigger: GAGAACATCCTTCTTTGTCAAGCTTTGCGAACATTT...TGTAAACCAATTAAAAGAAGTTAGAAGAACCCAGCAAGCACGGGCTACAGGAGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000044535.14 ENSMUST00000153302.8 |
||
| 3UTR-3UTR CAA 90 bp | ATAACCCAGTTGATCAGACATTCCCAGATTGGTAACCACCAATGGTACCCTATGAAATGTTCGCAAAGCTaGACAAAGAAGGATGTTCTC | + |
|
Preference number: 3 (lower is better) Translates to: ITQLIRHSQIGNHQWYPMKCSQS*TKKDVL Trigger: GAGAACATCCTTCTTTGTCAAGCTTTGCGAACATTT...CATAGGGTACCATTGGTGGTTACCAATCTGGGAATGTCTGATCAACTGGGTTAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000153302.8 |
||
| 3UTR TCA 72 bp | ATTTGGGGGTGGGAGGAGCGGAAAGGTTTGTGGCTTTaGAATAAAATCATCTTATTGGCACACACCTTTAAT | + |
|
Preference number: 3 (lower is better) Translates to: IWGWEERKGLWL*NKIILLAHTFN Trigger: ATTAAAGGTGTGTGCCAATAAGATGATTTTATTTCAAAGCCACAAACCTTTCCGCTCCTCCCACCCCCAAAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000044535.14 ENSMUST00000055245.13 |
||
| 3UTR CCA 72 bp | TGGTCAATATATGAAGTCAGGAAAGGTTGTGAGAGTTaGTTCTTTCCTTCACTGTGGGAGTTTCAAAAATCC | + |
|
Preference number: 3 (lower is better) Translates to: WSIYEVRKGCES*FFPSLWEFQKS Trigger: GGATTTTTGAAACTCCCACAGTGAAGGAAAGAACCAACTCTCACAACCTTTCCTGACTTCATATATTGACCA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000044535.14 ENSMUST00000055245.13 ENSMUST00000117364.8 ENSMUST00000153302.8 ENSMUST00000200657.5 |
||
| CDS-3UTR TCA 90 bp | TCTAGGCTGCTTGAGGAAGCCTTGTCTTGGTGCCTGCTGCGGGACGCTGCCACAGAGTCTGTGTTGAGATaGTGGAAAGTGAGCGCGCCG | + |
|
Preference number: 4 (lower is better) Translates to: SRLLEEALSWCLLRDAATESVLR*WKVSAP Trigger: CGGCGCGCTCACTTTCCATCATCTCAACACAGACTC...TGTGGCAGCGTCCCGCAGCAGGCACCAAGACAAGGCTTCCTCAAGCAGCCTAGA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044535.14 ENSMUST00000153302.8 |
||
| CDS-3UTR GCA 90 bp | TCTAGGCTGCTTGAGGAAGCCTTGTCTTGGTGCCTGCTGCGGGACGCTGCCACAATCCATGGGAACAAGTaGCTCTTCTGGCCTCAGACG | + |
|
Preference number: 4 (lower is better) Translates to: SRLLEEALSWCLLRDAATIHGNK*LFWPQT Trigger: CGTCTGAGGCCAGAAGAGGCACTTGTTCCCATGGAT...TGTGGCAGCGTCCCGCAGCAGGCACCAAGACAAGGCTTCCTCAAGCAGCCTAGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044535.14 |
||
| CDS-3UTR TCA 90 bp | GACGCTGCCACAGAAGGTCTGCTTTCTGTCTCCAGCAGCCGTGGTCTCTTCACAGAGTCTGTGTTGAGATaGTGGAAAGTGAGCGCGCCG | + |
|
Preference number: 4 (lower is better) Translates to: DAATEGLLSVSSSRGLFTESVLR*WKVSAP Trigger: CGGCGCGCTCACTTTCCATCATCTCAACACAGACTC...TGTGAAGAGACCACGGCTGCTGGAGACAGAAAGCAGACCTTCTGTGGCAGCGTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044535.14 ENSMUST00000153302.8 |
||
| CDS-3UTR CCA 90 bp | ATCATCTTATTGGCACACACCTTTAATCTCAGCACAGGAGGCAGAGGGAGGTGGGAGGAAGCCTTGTCTTaGTGCCTGCTGCGGGACGCT | + |
|
Preference number: 4 (lower is better) Translates to: IILLAHTFNLSTGGRGRWEEALS*CLLRDA Trigger: AGCGTCCCGCAGCAGGCACCAAGACAAGGCTTCCTC...CCACCTCCCTCTGCCTCCTGTGCTGAGATTAAAGGTGTGTGCCAATAAGATGAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055245.13 |
||
| CDS-3UTR TCA 90 bp | CTAGGCTGCTTGAGGAAGCCTTGTCTTGGTGCCTGCTGCGGGACGCTGCCACAGAACGTTGTCCATCTGTaGATCAGTAATGCTATTCTT | + |
|
Preference number: 4 (lower is better) Translates to: LGCLRKPCLGACCGTLPQNVVHL*ISNAIL Trigger: AAGAATAGCATTACTGATTCACAGATGGACAACGTT...CTGTGGCAGCGTCCCGCAGCAGGCACCAAGACAAGGCTTCCTCAAGCAGCCTAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044535.14 |
||
| CDS-3UTR GCA 90 bp | AATAAAATCATCTTATTGGCACACACCTTTAATCTCAGCACAGGAGGCAGAGGGGAAGCCTTGTCTTGGTaGCTGCTGCGGGACGCTGCC | + |
|
Preference number: 4 (lower is better) Translates to: NKIILLAHTFNLSTGGRGEALSW*LLRDAA Trigger: GGCAGCGTCCCGCAGCAGGCACCAAGACAAGGCTTC...CCCTCTGCCTCCTGTGCTGAGATTAAAGGTGTGTGCCAATAAGATGATTTTATT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055245.13 |
||
| CDS-3UTR GCA 90 bp | ATATATGAAGTCAGGAAAGGTTGTGAGAGTTGGTTCTTTCCTTCACTGTGGGAGGAAGCCTTGTCTTGGTaGCTGCTGCGGGACGCTGCC | + |
|
Preference number: 4 (lower is better) Translates to: IYEVRKGCESWFFPSLWEEALSW*LLRDAA Trigger: GGCAGCGTCCCGCAGCAGGCACCAAGACAAGGCTTC...CTCCCACAGTGAAGGAAAGAACCAACTCTCACAACCTTTCCTGACTTCATATAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000055245.13 ENSMUST00000117364.8 ENSMUST00000200657.5 |
||
| CDS-3UTR GCA 90 bp | AAGTCAGGAAAGGTTGTGAGAGTTGGTTCTTTCCTTCACTGTGGGAGTTTCAAAGAAGCCTTGTCTTGGTaGCTGCTGCGGGACGCTGCC | + |
|
Preference number: 4 (lower is better) Translates to: KSGKVVRVGSFLHCGSFKEALSW*LLRDAA Trigger: GGCAGCGTCCCGCAGCAGGCACCAAGACAAGGCTTC...TTTGAAACTCCCACAGTGAAGGAAAGAACCAACTCTCACAACCTTTCCTGACTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000055245.13 ENSMUST00000117364.8 ENSMUST00000200657.5 |
||
| CDS-3UTR GCA 90 bp | GCCACAGAAGGTCTGCTTTCTGTCTCCAGCAGCCGTGGTCTCTTCACAGACCCCTTTCTGTGGAGTAACTaGTCTCTAAATGTCATGATC | + |
|
Preference number: 4 (lower is better) Translates to: ATEGLLSVSSSRGLFTDPFLWSN*SLNVMI Trigger: GATCATGACATTTAGAGAGCAGTTACTCCACAGAAA...GGGGTCTGTGAAGAGACCACGGCTGCTGGAGACAGAAAGCAGACCTTCTGTGGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044535.14 |
||
| CDS-3UTR CCA 90 bp | ATGAAGTCAGGAAAGGTTGTGAGAGTTGGTTCTTTCCTTCACTGTGGGAGTTTCTGTCTCCAGCAGCCGTaGTCTCTTCACAGACCCCTG | + |
|
Preference number: 4 (lower is better) Translates to: MKSGKVVRVGSFLHCGSFCLQQP*SLHRPL Trigger: CAGGGGTCTGTGAAGAGACCACGGCTGCTGGAGACA...GAAACTCCCACAGTGAAGGAAAGAACCAACTCTCACAACCTTTCCTGACTTCAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000055245.13 ENSMUST00000117364.8 ENSMUST00000200657.5 |
||
| CDS-3UTR CCA 90 bp | AGGAAAGGTTGTGAGAGTTGGTTCTTTCCTTCACTGTGGGAGTTTCAAAAATCCGAGGAAGCCTTGTCTTaGTGCCTGCTGCGGGACGCT | + |
|
Preference number: 4 (lower is better) Translates to: RKGCESWFFPSLWEFQKSEEALS*CLLRDA Trigger: AGCGTCCCGCAGCAGGCACCAAGACAAGGCTTCCTC...GGATTTTTGAAACTCCCACAGTGAAGGAAAGAACCAACTCTCACAACCTTTCCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000055245.13 ENSMUST00000117364.8 ENSMUST00000200657.5 |
||
| CDS-3UTR TCA 90 bp | ATAACCCAGTTGATCAGACATTCCCAGATTGGTAACCACCAATGGTACCCTATGGAGTCTGTGTTGAGATaGTGGAAAGTGAGCGCGCCG | + |
|
Preference number: 4 (lower is better) Translates to: ITQLIRHSQIGNHQWYPMESVLR*WKVSAP Trigger: CGGCGCGCTCACTTTCCATCATCTCAACACAGACTC...CATAGGGTACCATTGGTGGTTACCAATCTGGGAATGTCTGATCAACTGGGTTAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000129358.2 ENSMUST00000153302.8 |
||
| CDS-3UTR CCA 90 bp | AGGAAAGGTTGTGAGAGTTGGTTCTTTCCTTCACTGTGGGAGTTTCAAAAATCCTGTCTCCAGCAGCCGTaGTCTCTTCACAGACCCCTG | + |
|
Preference number: 4 (lower is better) Translates to: RKGCESWFFPSLWEFQKSCLQQP*SLHRPL Trigger: CAGGGGTCTGTGAAGAGACCACGGCTGCTGGAGACA...GGATTTTTGAAACTCCCACAGTGAAGGAAAGAACCAACTCTCACAACCTTTCCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000055245.13 ENSMUST00000117364.8 ENSMUST00000200657.5 |
||
| CDS-3UTR CCA 90 bp | TCAGGAAAGGTTGTGAGAGTTGGTTCTTTCCTTCACTGTGGGAGTTTCAAAAATGAGGAAGCCTTGTCTTaGTGCCTGCTGCGGGACGCT | + |
|
Preference number: 4 (lower is better) Translates to: SGKVVRVGSFLHCGSFKNEEALS*CLLRDA Trigger: AGCGTCCCGCAGCAGGCACCAAGACAAGGCTTCCTC...ATTTTTGAAACTCCCACAGTGAAGGAAAGAACCAACTCTCACAACCTTTCCTGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000055245.13 ENSMUST00000117364.8 ENSMUST00000200657.5 |
||
| CDS-3UTR TCA 90 bp | ATATATGAAGTCAGGAAAGGTTGTGAGAGTTGGTTCTTTCCTTCACTGTGGGAGGAGTCTGTGTTGAGATaGTGGAAAGTGAGCGCGCCG | + |
|
Preference number: 4 (lower is better) Translates to: IYEVRKGCESWFFPSLWEESVLR*WKVSAP Trigger: CGGCGCGCTCACTTTCCATCATCTCAACACAGACTC...CTCCCACAGTGAAGGAAAGAACCAACTCTCACAACCTTTCCTGACTTCATATAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000044535.14 ENSMUST00000055245.13 ENSMUST00000117364.8 ENSMUST00000153302.8 ENSMUST00000200657.5 |
||
| CDS-3UTR TCA 90 bp | AGGAAAGGTTGTGAGAGTTGGTTCTTTCCTTCACTGTGGGAGTTTCAAAAATCCGCGTGTTCCAGGCAGTaGGTGGAGCAGCTTTCTGTT | + |
|
Preference number: 4 (lower is better) Translates to: RKGCESWFFPSLWEFQKSACSRQ*VEQLSV Trigger: AACAGAAAGCTGCTCCACTCACTGCCTGGAACACGC...GGATTTTTGAAACTCCCACAGTGAAGGAAAGAACCAACTCTCACAACCTTTCCT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000044535.14 ENSMUST00000055245.13 ENSMUST00000117364.8 ENSMUST00000200657.5 |
||
| CDS-3UTR TCA 90 bp | AAGTCAGGAAAGGTTGTGAGAGTTGGTTCTTTCCTTCACTGTGGGAGTTTCAAAGCGTGTTCCAGGCAGTaGGTGGAGCAGCTTTCTGTT | + |
|
Preference number: 4 (lower is better) Translates to: KSGKVVRVGSFLHCGSFKACSRQ*VEQLSV Trigger: AACAGAAAGCTGCTCCACTCACTGCCTGGAACACGC...TTTGAAACTCCCACAGTGAAGGAAAGAACCAACTCTCACAACCTTTCCTGACTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000044535.14 ENSMUST00000055245.13 ENSMUST00000117364.8 ENSMUST00000200657.5 |
||
| CDS-3UTR TCA 90 bp | ATATATGAAGTCAGGAAAGGTTGTGAGAGTTGGTTCTTTCCTTCACTGTGGGAGGCGTGTTCCAGGCAGTaGGTGGAGCAGCTTTCTGTT | + |
|
Preference number: 4 (lower is better) Translates to: IYEVRKGCESWFFPSLWEACSRQ*VEQLSV Trigger: AACAGAAAGCTGCTCCACTCACTGCCTGGAACACGC...CTCCCACAGTGAAGGAAAGAACCAACTCTCACAACCTTTCCTGACTTCATATAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000044535.14 ENSMUST00000055245.13 ENSMUST00000117364.8 ENSMUST00000200657.5 |
||
| CDS-3UTR GCA 90 bp | CAATATATGAAGTCAGGAAAGGTTGTGAGAGTTGGTTCTTTCCTTCACTGTGGGCTGCCACAGAAGGTCTaGTTTCTGTCTCCAGCAGCC | + |
|
Preference number: 4 (lower is better) Translates to: QYMKSGKVVRVGSFLHCGLPQKV*FLSPAA Trigger: GGCTGCTGGAGACAGAAAGCAGACCTTCTGTGGCAG...CCCACAGTGAAGGAAAGAACCAACTCTCACAACCTTTCCTGACTTCATATATTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000055245.13 ENSMUST00000117364.8 ENSMUST00000200657.5 |
||
| CDS-3UTR GCA 90 bp | AAGTCAGGAAAGGTTGTGAGAGTTGGTTCTTTCCTTCACTGTGGGAGTTTCAAACTGCCACAGAAGGTCTaGTTTCTGTCTCCAGCAGCC | + |
|
Preference number: 4 (lower is better) Translates to: KSGKVVRVGSFLHCGSFKLPQKV*FLSPAA Trigger: GGCTGCTGGAGACAGAAAGCAGACCTTCTGTGGCAG...TTTGAAACTCCCACAGTGAAGGAAAGAACCAACTCTCACAACCTTTCCTGACTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000055245.13 ENSMUST00000117364.8 ENSMUST00000200657.5 |
||
| CDS-3UTR CCA 90 bp | AAGTCAGGAAAGGTTGTGAGAGTTGGTTCTTTCCTTCACTGTGGGAGTTTCAAACTCTTCACAGACCCCTaGTCGTGTGTGTCTAGAGCC | + |
|
Preference number: 4 (lower is better) Translates to: KSGKVVRVGSFLHCGSFKLFTDP*SCVSRA Trigger: GGCTCTAGACACACACGACCAGGGGTCTGTGAAGAG...TTTGAAACTCCCACAGTGAAGGAAAGAACCAACTCTCACAACCTTTCCTGACTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000055245.13 ENSMUST00000117364.8 ENSMUST00000200657.5 |
||
| CDS-3UTR CCA 90 bp | AGGAAAGGTTGTGAGAGTTGGTTCTTTCCTTCACTGTGGGAGTTTCAAAAATCCCTCTTCACAGACCCCTaGTCGTGTGTGTCTAGAGCC | + |
|
Preference number: 4 (lower is better) Translates to: RKGCESWFFPSLWEFQKSLFTDP*SCVSRA Trigger: GGCTCTAGACACACACGACCAGGGGTCTGTGAAGAG...GGATTTTTGAAACTCCCACAGTGAAGGAAAGAACCAACTCTCACAACCTTTCCT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000055245.13 ENSMUST00000117364.8 ENSMUST00000200657.5 |
||
| CDS-3UTR CCA 90 bp | TCAGGAAAGGTTGTGAGAGTTGGTTCTTTCCTTCACTGTGGGAGTTTCAAAAATTGTCTCCAGCAGCCGTaGTCTCTTCACAGACCCCTG | + |
|
Preference number: 4 (lower is better) Translates to: SGKVVRVGSFLHCGSFKNCLQQP*SLHRPL Trigger: CAGGGGTCTGTGAAGAGACCACGGCTGCTGGAGACA...ATTTTTGAAACTCCCACAGTGAAGGAAAGAACCAACTCTCACAACCTTTCCTGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000055245.13 ENSMUST00000117364.8 ENSMUST00000200657.5 |
||
| CDS-3UTR TCA 90 bp | ACAAACAAACAAACAAAACCAAAACCAAACACCTTTGGACTGGAGCTCAGTGGTGAGTCTGTGTTGAGATaGTGGAAAGTGAGCGCGCCG | + |
|
Preference number: 4 (lower is better) Translates to: TNKQTKPKPNTFGLELSGESVLR*WKVSAP Trigger: CGGCGCGCTCACTTTCCATCATCTCAACACAGACTC...ACCACTGAGCTCCAGTCCAAAGGTGTTTGGTTTTGGTTTTGTTTGTTTGTTTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000044535.14 ENSMUST00000055245.13 |
||
| CDS-3UTR GCA 90 bp | TCAGGAAAGGTTGTGAGAGTTGGTTCTTTCCTTCACTGTGGGAGTTTCAAAAATCTGCCACAGAAGGTCTaGTTTCTGTCTCCAGCAGCC | + |
|
Preference number: 4 (lower is better) Translates to: SGKVVRVGSFLHCGSFKNLPQKV*FLSPAA Trigger: GGCTGCTGGAGACAGAAAGCAGACCTTCTGTGGCAG...ATTTTTGAAACTCCCACAGTGAAGGAAAGAACCAACTCTCACAACCTTTCCTGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000055245.13 ENSMUST00000117364.8 ENSMUST00000200657.5 |
||
| CDS-3UTR CCA 90 bp | TCAGGAAAGGTTGTGAGAGTTGGTTCTTTCCTTCACTGTGGGAGTTTCAAAAATCTCTTCACAGACCCCTaGTCGTGTGTGTCTAGAGCC | + |
|
Preference number: 4 (lower is better) Translates to: SGKVVRVGSFLHCGSFKNLFTDP*SCVSRA Trigger: GGCTCTAGACACACACGACCAGGGGTCTGTGAAGAG...ATTTTTGAAACTCCCACAGTGAAGGAAAGAACCAACTCTCACAACCTTTCCTGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000055245.13 ENSMUST00000117364.8 ENSMUST00000200657.5 |
||
| 3UTR CAA 72 bp | CAAACACCTTTGGACTGGAGCTCAGTGGTAGAGAAGTaGCCTACCATTCACAGTTCCCAAACCACAAGCTTA | + |
|
Preference number: 4 (lower is better) Translates to: QTPLDWSSVVEK*PTIHSSQTTSL Trigger: TAAGCTTGTGGTTTGGGAACTGTGAATGGTAGGCAACTTCTCTACCACTGAGCTCCAGTCCAAAGGTGTTTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044535.14 ENSMUST00000055245.13 |
||
| CDS-3UTR GCA 90 bp | GAAATAAAATCATCTTATTGGCACACACCTTTAATCTCAGCACAGGAGGCAGAGGACATTCTTCTCTCCTaGTCCTGTAGCCCGTGCTTG | + |
|
Preference number: 4 (lower is better) Translates to: EIKSSYWHTPLISAQEAEDILLS*SCSPCL Trigger: CAAGCACGGGCTACAGGAGCAGGAGAGAAGAATGTC...CTCTGCCTCCTGTGCTGAGATTAAAGGTGTGTGCCAATAAGATGATTTTATTTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055245.13 |
||
| CDS-3UTR CCA 90 bp | ATGAAGTCAGGAAAGGTTGTGAGAGTTGGTTCTTTCCTTCACTGTGGGAGTTTCTCCTGTGGGTTTCTCTaGACATTCTTCTCTCCTGCT | + |
|
Preference number: 4 (lower is better) Translates to: MKSGKVVRVGSFLHCGSFSCGFL*TFFSPA Trigger: AGCAGGAGAGAAGAATGTCCAGAGAAACCCACAGGA...GAAACTCCCACAGTGAAGGAAAGAACCAACTCTCACAACCTTTCCTGACTTCAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000055245.13 ENSMUST00000117364.8 ENSMUST00000200657.5 |
||
| CDS-3UTR CCA 90 bp | AAGTCAGGAAAGGTTGTGAGAGTTGGTTCTTTCCTTCACTGTGGGAGTTTCAAAGTTCCAGGCAGTGAGTaGAGCAGCTTTCTGTTGTTA | + |
|
Preference number: 4 (lower is better) Translates to: KSGKVVRVGSFLHCGSFKVPGSE*SSFLLL Trigger: TAACAACAGAAAGCTGCTCCACTCACTGCCTGGAAC...TTTGAAACTCCCACAGTGAAGGAAAGAACCAACTCTCACAACCTTTCCTGACTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000044535.14 ENSMUST00000055245.13 ENSMUST00000117364.8 ENSMUST00000200657.5 |
||
| CDS-3UTR CCA 90 bp | AAGTCAGGAAAGGTTGTGAGAGTTGGTTCTTTCCTTCACTGTGGGAGTTTCAAATCCTGTGGGTTTCTCTaGACATTCTTCTCTCCTGCT | + |
|
Preference number: 4 (lower is better) Translates to: KSGKVVRVGSFLHCGSFKSCGFL*TFFSPA Trigger: AGCAGGAGAGAAGAATGTCCAGAGAAACCCACAGGA...TTTGAAACTCCCACAGTGAAGGAAAGAACCAACTCTCACAACCTTTCCTGACTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000055245.13 ENSMUST00000117364.8 ENSMUST00000200657.5 |
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| 3UTR CAA 72 bp | AAAGAATGTATCTATTTAAGTCTTTCCCTCGACAATTaGGGGGTGGGAGGAGCGGAAAGGTTTGTGGCTTTG | + |
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Preference number: 4 (lower is better) Translates to: KECIYLSLSLDN*GVGGAERFVAL Trigger: CAAAGCCACAAACCTTTCCGCTCCTCCCACCCCCAAATTGTCGAGGGAAAGACTTAAATAGATACATTCTTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000044535.14 ENSMUST00000055245.13 |
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| CDS-3UTR TCA 90 bp | GCTACACAGAGAGACCCTATCCCAATGCACCCCTCAACCCACAAAACAAACAAAAACGTTGTCCATCTGTaGATCAGTAATGCTATTCTT | + |
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Preference number: 4 (lower is better) Translates to: ATQRDPIPMHPSTHKTNKNVVHL*ISNAIL Trigger: AAGAATAGCATTACTGATTCACAGATGGACAACGTT...TTTGTTTGTTTTGTGGGTTGAGGGGTGCATTGGGATAGGGTCTCTCTGTGTAGC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000044535.14 ENSMUST00000055245.13 |
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| CDS-3UTR CCA 90 bp | GAAATAAAATCATCTTATTGGCACACACCTTTAATCTCAGCACAGGAGGCAGAGGTTCCAGGCAGTGAGTaGAGCAGCTTTCTGTTGTTA | + |
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Preference number: 4 (lower is better) Translates to: EIKSSYWHTPLISAQEAEVPGSE*SSFLLL Trigger: TAACAACAGAAAGCTGCTCCACTCACTGCCTGGAAC...CTCTGCCTCCTGTGCTGAGATTAAAGGTGTGTGCCAATAAGATGATTTTATTTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000044535.14 ENSMUST00000055245.13 |
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| CDS-3UTR CCA 90 bp | TCAGGAAAGGTTGTGAGAGTTGGTTCTTTCCTTCACTGTGGGAGTTTCAAAAATGTTCCAGGCAGTGAGTaGAGCAGCTTTCTGTTGTTA | + |
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Preference number: 4 (lower is better) Translates to: SGKVVRVGSFLHCGSFKNVPGSE*SSFLLL Trigger: TAACAACAGAAAGCTGCTCCACTCACTGCCTGGAAC...ATTTTTGAAACTCCCACAGTGAAGGAAAGAACCAACTCTCACAACCTTTCCTGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000044535.14 ENSMUST00000055245.13 ENSMUST00000117364.8 ENSMUST00000200657.5 |
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| CDS-3UTR CCA 90 bp | GGTCAATATATGAAGTCAGGAAAGGTTGTGAGAGTTGGTTCTTTCCTTCACTGTTCCTGTGGGTTTCTCTaGACATTCTTCTCTCCTGCT | + |
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Preference number: 4 (lower is better) Translates to: GQYMKSGKVVRVGSFLHCSCGFL*TFFSPA Trigger: AGCAGGAGAGAAGAATGTCCAGAGAAACCCACAGGA...ACAGTGAAGGAAAGAACCAACTCTCACAACCTTTCCTGACTTCATATATTGACC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000055245.13 ENSMUST00000117364.8 ENSMUST00000200657.5 |
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| 3UTR CAA 72 bp | TACTCGGTGTTAACAACAGGAAAACCAGCTCAGGGCTaGAAAGATGTGTCTGTAAGTTTCTGTGGAGTAACT | + |
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Preference number: 4 (lower is better) Translates to: YSVLTTGKPAQG*KDVSVSFCGVT Trigger: AGTTACTCCACAGAAACTTACAGACACATCTTTCAAGCCCTGAGCTGGTTTTCCTGTTGTTAACACCGAGTA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000129358.2 ENSMUST00000153302.8 |
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| CDS-3UTR TCA 90 bp | ATGAAGTCAGGAAAGGTTGTGAGAGTTGGTTCTTTCCTTCACTGTGGGAGTTTCAGTCTTTCTGACATTTaGAAGAACCTTCTTCAGTGC | + |
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Preference number: 4 (lower is better) Translates to: MKSGKVVRVGSFLHCGSFSLSDI*KNLLQC Trigger: GCACTGAAGAAGGTTCTTTCAAATGTCAGAAAGACT...GAAACTCCCACAGTGAAGGAAAGAACCAACTCTCACAACCTTTCCTGACTTCAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000044535.14 ENSMUST00000055245.13 ENSMUST00000117364.8 ENSMUST00000200657.5 |
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| CDS-3UTR TCA 90 bp | AAGTCAGGAAAGGTTGTGAGAGTTGGTTCTTTCCTTCACTGTGGGAGTTTCAAACCACCACAGTCTTTCTaGCATTTGAAAGAACCTTCT | + |
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Preference number: 4 (lower is better) Translates to: KSGKVVRVGSFLHCGSFKPPQSF*HLKEPS Trigger: AGAAGGTTCTTTCAAATGTCAGAAAGACTGTGGTGG...TTTGAAACTCCCACAGTGAAGGAAAGAACCAACTCTCACAACCTTTCCTGACTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000044535.14 ENSMUST00000055245.13 ENSMUST00000117364.8 ENSMUST00000200657.5 |
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| CDS-3UTR TCA 90 bp | AATAAAATCATCTTATTGGCACACACCTTTAATCTCAGCACAGGAGGCAGAGGGCCACCACAGTCTTTCTaGCATTTGAAAGAACCTTCT | + |
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Preference number: 4 (lower is better) Translates to: NKIILLAHTFNLSTGGRGPPQSF*HLKEPS Trigger: AGAAGGTTCTTTCAAATGTCAGAAAGACTGTGGTGG...CCCTCTGCCTCCTGTGCTGAGATTAAAGGTGTGTGCCAATAAGATGATTTTATT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000044535.14 ENSMUST00000055245.13 |
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| CDS-3UTR TCA 90 bp | CAATATATGAAGTCAGGAAAGGTTGTGAGAGTTGGTTCTTTCCTTCACTGTGGGCCACCACAGTCTTTCTaGCATTTGAAAGAACCTTCT | + |
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Preference number: 4 (lower is better) Translates to: QYMKSGKVVRVGSFLHCGPPQSF*HLKEPS Trigger: AGAAGGTTCTTTCAAATGTCAGAAAGACTGTGGTGG...CCCACAGTGAAGGAAAGAACCAACTCTCACAACCTTTCCTGACTTCATATATTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000044535.14 ENSMUST00000055245.13 ENSMUST00000117364.8 ENSMUST00000200657.5 |
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| CDS-3UTR CCA 90 bp | ACAAACAAACAAACAAAACCAAAACCAAACACCTTTGGACTGGAGCTCAGTGGTGTAGCCCGTGCTTGCTaGGTTCTTCTAACTTCTTTT | + |
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Preference number: 4 (lower is better) Translates to: TNKQTKPKPNTFGLELSGVARAC*VLLTSF Trigger: AAAAGAAGTTAGAAGAACCCAGCAAGCACGGGCTAC...ACCACTGAGCTCCAGTCCAAAGGTGTTTGGTTTTGGTTTTGTTTGTTTGTTTGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055245.13 |
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| CDS-3UTR TCA 90 bp | ATAACCCAGTTGATCAGACATTCCCAGATTGGTAACCACCAATGGTACCCTATGAACGTTGTCCATCTGTaGATCAGTAATGCTATTCTT | + |
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Preference number: 4 (lower is better) Translates to: ITQLIRHSQIGNHQWYPMNVVHL*ISNAIL Trigger: AAGAATAGCATTACTGATTCACAGATGGACAACGTT...CATAGGGTACCATTGGTGGTTACCAATCTGGGAATGTCTGATCAACTGGGTTAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000129358.2 |
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| CDS-3UTR TCA 90 bp | CAATATATGAAGTCAGGAAAGGTTGTGAGAGTTGGTTCTTTCCTTCACTGTGGGAGTCTTTCTGACATTTaGAAGAACCTTCTTCAGTGC | + |
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Preference number: 4 (lower is better) Translates to: QYMKSGKVVRVGSFLHCGSLSDI*KNLLQC Trigger: GCACTGAAGAAGGTTCTTTCAAATGTCAGAAAGACT...CCCACAGTGAAGGAAAGAACCAACTCTCACAACCTTTCCTGACTTCATATATTG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000044535.14 ENSMUST00000055245.13 ENSMUST00000117364.8 ENSMUST00000200657.5 |
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| CDS-3UTR TCA 90 bp | TCAGGAAAGGTTGTGAGAGTTGGTTCTTTCCTTCACTGTGGGAGTTTCAAAAATCCACCACAGTCTTTCTaGCATTTGAAAGAACCTTCT | + |
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Preference number: 4 (lower is better) Translates to: SGKVVRVGSFLHCGSFKNPPQSF*HLKEPS Trigger: AGAAGGTTCTTTCAAATGTCAGAAAGACTGTGGTGG...ATTTTTGAAACTCCCACAGTGAAGGAAAGAACCAACTCTCACAACCTTTCCTGA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000044535.14 ENSMUST00000055245.13 ENSMUST00000117364.8 ENSMUST00000200657.5 |
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| CDS-3UTR TCA 90 bp | AGGAAAGGTTGTGAGAGTTGGTTCTTTCCTTCACTGTGGGAGTTTCAAAAATCCAACGTTGTCCATCTGTaGATCAGTAATGCTATTCTT | + |
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Preference number: 4 (lower is better) Translates to: RKGCESWFFPSLWEFQKSNVVHL*ISNAIL Trigger: AAGAATAGCATTACTGATTCACAGATGGACAACGTT...GGATTTTTGAAACTCCCACAGTGAAGGAAAGAACCAACTCTCACAACCTTTCCT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000044535.14 ENSMUST00000055245.13 ENSMUST00000117364.8 ENSMUST00000200657.5 |
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| CDS-3UTR TCA 90 bp | GGTCAATATATGAAGTCAGGAAAGGTTGTGAGAGTTGGTTCTTTCCTTCACTGTAGTCTTTCTGACATTTaGAAGAACCTTCTTCAGTGC | + |
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Preference number: 4 (lower is better) Translates to: GQYMKSGKVVRVGSFLHCSLSDI*KNLLQC Trigger: GCACTGAAGAAGGTTCTTTCAAATGTCAGAAAGACT...ACAGTGAAGGAAAGAACCAACTCTCACAACCTTTCCTGACTTCATATATTGACC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000044535.14 ENSMUST00000055245.13 ENSMUST00000117364.8 ENSMUST00000200657.5 |
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| CDS-3UTR GCA 90 bp | AGGAAAGGTTGTGAGAGTTGGTTCTTTCCTTCACTGTGGGAGTTTCAAAAATCCTTTCTGTGGAGTAACTaGTCTCTAAATGTCATGATC | + |
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Preference number: 4 (lower is better) Translates to: RKGCESWFFPSLWEFQKSFLWSN*SLNVMI Trigger: GATCATGACATTTAGAGAGCAGTTACTCCACAGAAA...GGATTTTTGAAACTCCCACAGTGAAGGAAAGAACCAACTCTCACAACCTTTCCT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000044535.14 ENSMUST00000055245.13 ENSMUST00000117364.8 ENSMUST00000200657.5 |
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| CDS-3UTR CCA 90 bp | CTACCATTCACAGTTCCCAAACCACAAGCTTATATATGTATTTATAGCTATGCAGTTCCAGGCAGTGAGTaGAGCAGCTTTCTGTTGTTA | + |
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Preference number: 4 (lower is better) Translates to: LPFTVPKPQAYICIYSYAVPGSE*SSFLLL Trigger: TAACAACAGAAAGCTGCTCCACTCACTGCCTGGAAC...TGCATAGCTATAAATACATATATAAGCTTGTGGTTTGGGAACTGTGAATGGTAG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044535.14 ENSMUST00000055245.13 |
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| CDS-3UTR TCA 90 bp | TCAGGAAAGGTTGTGAGAGTTGGTTCTTTCCTTCACTGTGGGAGTTTCAAAAATAACGTTGTCCATCTGTaGATCAGTAATGCTATTCTT | + |
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Preference number: 4 (lower is better) Translates to: SGKVVRVGSFLHCGSFKNNVVHL*ISNAIL Trigger: AAGAATAGCATTACTGATTCACAGATGGACAACGTT...ATTTTTGAAACTCCCACAGTGAAGGAAAGAACCAACTCTCACAACCTTTCCTGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000044535.14 ENSMUST00000055245.13 ENSMUST00000117364.8 ENSMUST00000200657.5 |
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| CDS-3UTR GCA 90 bp | TCAGGAAAGGTTGTGAGAGTTGGTTCTTTCCTTCACTGTGGGAGTTTCAAAAATTTTCTGTGGAGTAACTaGTCTCTAAATGTCATGATC | + |
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Preference number: 4 (lower is better) Translates to: SGKVVRVGSFLHCGSFKNFLWSN*SLNVMI Trigger: GATCATGACATTTAGAGAGCAGTTACTCCACAGAAA...ATTTTTGAAACTCCCACAGTGAAGGAAAGAACCAACTCTCACAACCTTTCCTGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000044535.14 ENSMUST00000055245.13 ENSMUST00000117364.8 ENSMUST00000200657.5 |
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| CDS-3UTR TCA 90 bp | GAAGTTGCCTACCATTCACAGTTCCCAAACCACAAGCTTATATATGTATTTATAAGTCTTTCTGACATTTaGAAGAACCTTCTTCAGTGC | + |
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Preference number: 4 (lower is better) Translates to: EVAYHSQFPNHKLIYVFISLSDI*KNLLQC Trigger: GCACTGAAGAAGGTTCTTTCAAATGTCAGAAAGACT...TATAAATACATATATAAGCTTGTGGTTTGGGAACTGTGAATGGTAGGCAACTTC 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044535.14 ENSMUST00000055245.13 |
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| CDS TCA 90 bp | ATTTCACCGAGGAGAAAACCTTCCGTGTCTGAGTCTGTGTTGAGATaGTGGAAAGTGAGCGCGCCGAGCACGAAGCCAGACAGCACCCCC | + |
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Preference number: 5 (lower is better) Translates to: ISPRRKPSVSESVLR*WKVSAPSTKPDSTP Trigger: GGGGGTGCTGTCTGGCTTCGTGCTCGGCGCGCTCACTTTCCATCATCTCAACACAGACTCAGACACGGAAGGTTTTCTCCTCGGTGAAAT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000044535.14 ENSMUST00000055245.13 ENSMUST00000117364.8 ENSMUST00000129358.2 ENSMUST00000200657.5 |
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| CDS TCA 90 bp | GCATGGGATATATTTCTGAATGTCGTGTCTGAGTCTGTGTTGAGATaGTGGAAAGTGAGCGCGCCGAGCACGAAGCCAGACAGCACCCCC | + |
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Preference number: 5 (lower is better) Translates to: AWDIFLNVVSESVLR*WKVSAPSTKPDSTP Trigger: GGGGGTGCTGTCTGGCTTCGTGCTCGGCGCGCTCACTTTCCATCATCTCAACACAGACTCAGACACGACATTCAGAAATATATCCCATGC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000153302.8 |
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| CDS-3UTR CAA 90 bp | GCTACACAGAGAGACCCTATCCCAATGCACCCCTCAACCCACAAAACAAACAAAAAATGTTCGCAAAGCTaGACAAAGAAGGATGTTCTC | + |
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Preference number: 5 (lower is better) Translates to: ATQRDPIPMHPSTHKTNKKCSQS*TKKDVL Trigger: GAGAACATCCTTCTTTGTCAAGCTTTGCGAACATTT...TTTGTTTGTTTTGTGGGTTGAGGGGTGCATTGGGATAGGGTCTCTCTGTGTAGC 44% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000055245.13 |
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| CDS-3UTR CAA 90 bp | GCTCCTGTAGCCCGTGCTTGCTGGGTTCTTCTAACTTCTTTTAATTGGTTTACATGGAGCAGCTTTCTGTaGTTATACTCGGTGTTAACA | + |
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Preference number: 5 (lower is better) Translates to: APVARACWVLLTSFNWFTWSSFL*LYSVLT Trigger: TGTTAACACCGAGTATAACAACAGAAAGCTGCTCCA...TGTAAACCAATTAAAAGAAGTTAGAAGAACCCAGCAAGCACGGGCTACAGGAGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044535.14 |
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| CDS-3UTR CAA 90 bp | ATGAAGTCAGGAAAGGTTGTGAGAGTTGGTTCTTTCCTTCACTGTGGGAGTTTCTGGAGCAGCTTTCTGTaGTTATACTCGGTGTTAACA | + |
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Preference number: 5 (lower is better) Translates to: MKSGKVVRVGSFLHCGSFWSSFL*LYSVLT Trigger: TGTTAACACCGAGTATAACAACAGAAAGCTGCTCCA...GAAACTCCCACAGTGAAGGAAAGAACCAACTCTCACAACCTTTCCTGACTTCAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000044535.14 ENSMUST00000055245.13 ENSMUST00000117364.8 ENSMUST00000200657.5 |
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| CDS-3UTR CAA 90 bp | GAAATAAAATCATCTTATTGGCACACACCTTTAATCTCAGCACAGGAGGCAGAGTGGAGCAGCTTTCTGTaGTTATACTCGGTGTTAACA | + |
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Preference number: 5 (lower is better) Translates to: EIKSSYWHTPLISAQEAEWSSFL*LYSVLT Trigger: TGTTAACACCGAGTATAACAACAGAAAGCTGCTCCA...CTCTGCCTCCTGTGCTGAGATTAAAGGTGTGTGCCAATAAGATGATTTTATTTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000044535.14 ENSMUST00000055245.13 |
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| CDS-3UTR CAA 90 bp | GGTCAATATATGAAGTCAGGAAAGGTTGTGAGAGTTGGTTCTTTCCTTCACTGTTGGAGCAGCTTTCTGTaGTTATACTCGGTGTTAACA | + |
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Preference number: 5 (lower is better) Translates to: GQYMKSGKVVRVGSFLHCWSSFL*LYSVLT Trigger: TGTTAACACCGAGTATAACAACAGAAAGCTGCTCCA...ACAGTGAAGGAAAGAACCAACTCTCACAACCTTTCCTGACTTCATATATTGACC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000044535.14 ENSMUST00000055245.13 ENSMUST00000117364.8 ENSMUST00000200657.5 |
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| CDS TCA 72 bp | AGGAGAAAACCTTCCGTGTCTGAGTCTGTGTTGAGATaGTGGAAAGTGAGCGCGCCGAGCACGAAGCCAGAC | + |
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Preference number: 6 (lower is better) Translates to: RRKPSVSESVLR*WKVSAPSTKPD Trigger: GTCTGGCTTCGTGCTCGGCGCGCTCACTTTCCATCATCTCAACACAGACTCAGACACGGAAGGTTTTCTCCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000044535.14 ENSMUST00000055245.13 ENSMUST00000117364.8 ENSMUST00000129358.2 ENSMUST00000200657.5 |
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| CDS TCA 72 bp | ATATTTCTGAATGTCGTGTCTGAGTCTGTGTTGAGATaGTGGAAAGTGAGCGCGCCGAGCACGAAGCCAGAC | + |
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Preference number: 6 (lower is better) Translates to: IFLNVVSESVLR*WKVSAPSTKPD Trigger: GTCTGGCTTCGTGCTCGGCGCGCTCACTTTCCATCATCTCAACACAGACTCAGACACGACATTCAGAAATAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000153302.8 |
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