Pregenerated sensors for ABRACL (Mus musculus)

Ensembl gene IDs: ENSMUSG00000078453

Ensembl transcript IDs: ENSMUST00000020002.9, ENSMUST00000218994.2, ENSMUST00000220110.2, ENSMUST00000220433.2

Found 13 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS-3UTR TCA 90 bp	TTCCATAAACAACATTTTTCATGGCAGCTGGTCTGCAGTTTGCTTCTTGCTTTGCTGGAACCCAGGCGATaGATTTCCTCCACCAGGAGG	+
Preference number: 4 (lower is better) Translates to: FHKQHFSWQLVCSLLLALLEPRR*ISSTRR Trigger: CCTCCTGGTGGAGGAAATTCATCGCCTGGGTTCCAG...CAAAGCAAGAAGCAAACTGCAGACCAGCTGCCATGAAAAATGTTGTTTATGGAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000020002.9 ENSMUST00000220110.2
CDS-3UTR CCA 90 bp	TTCATGGCAGCTGGTCTGCAGTTTGCTTCTTGCTTTGACAGAATGTCAAGTGCCACGCTTCAAAGAGATTaGCACATCTGTCATCCTGGA	+
Preference number: 4 (lower is better) Translates to: FMAAGLQFASCFDRMSSATLQRD*HICHPG Trigger: TCCAGGATGACAGATGTGCCAATCTCTTTGAAGCGT...GGCACTTGACATTCTGTCAAAGCAAGAAGCAAACTGCAGACCAGCTGCCATGAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020002.9 ENSMUST00000220110.2
CDS-3UTR TCA 90 bp	AGTTTGCTTCTTGCTTTGACAGAATGTCAAGTGCCTGTAGAAATTGTCTTAAGACTGGAACCCAGGCGATaGATTTCCTCCACCAGGAGG	+
Preference number: 4 (lower is better) Translates to: SLLLALTECQVPVEIVLRLEPRR*ISSTRR Trigger: CCTCCTGGTGGAGGAAATTCATCGCCTGGGTTCCAG...TCTTAAGACAATTTCTACAGGCACTTGACATTCTGTCAAAGCAAGAAGCAAACT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020002.9 ENSMUST00000220110.2
CDS-3UTR GCA 90 bp	TTCATGGCAGCTGGTCTGCAGTTTGCTTCTTGCTTTGACAGAATGTCAAGTGCCAATCTTCCTTCGTTTTaGAGCTTTCAGAGTTCCTAC	+
Preference number: 4 (lower is better) Translates to: FMAAGLQFASCFDRMSSANLPSF*SFQSSY Trigger: GTAGGAACTCTGAAAGCTGCAAAACGAAGGAAGATT...GGCACTTGACATTCTGTCAAAGCAAGAAGCAAACTGCAGACCAGCTGCCATGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020002.9 ENSMUST00000220110.2
CDS-3UTR GCA 90 bp	GCAGCTGGTCTGCAGTTTGCTTCTTGCTTTGACAGAATGTCAAGTGCCTGTAGAAATCTTCCTTCGTTTTaGAGCTTTCAGAGTTCCTAC	+
Preference number: 4 (lower is better) Translates to: AAGLQFASCFDRMSSACRNLPSF*SFQSSY Trigger: GTAGGAACTCTGAAAGCTGCAAAACGAAGGAAGATT...TCTACAGGCACTTGACATTCTGTCAAAGCAAGAAGCAAACTGCAGACCAGCTGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020002.9 ENSMUST00000220110.2
CDS-3UTR CCA 90 bp	TTTTTCATGGCAGCTGGTCTGCAGTTTGCTTCTTGCTTTGACAGAATGTCAAGTACGCTTCAAAGAGATTaGCACATCTGTCATCCTGGA	+
Preference number: 4 (lower is better) Translates to: FFMAAGLQFASCFDRMSSTLQRD*HICHPG Trigger: TCCAGGATGACAGATGTGCCAATCTCTTTGAAGCGT...ACTTGACATTCTGTCAAAGCAAGAAGCAAACTGCAGACCAGCTGCCATGAAAAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000020002.9 ENSMUST00000220110.2
3UTR CAA 72 bp	TTTTCATGGCAGCTGGTCTGCAGTTTGCTTCTTGCTTaGACAGAATGTCAAGTGCCTGTAGAAATTGTCTTA	+
Preference number: 4 (lower is better) Translates to: FSWQLVCSLLLA*TECQVPVEIVL Trigger: TAAGACAATTTCTACAGGCACTTGACATTCTGTCAAAGCAAGAAGCAAACTGCAGACCAGCTGCCATGAAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020002.9 ENSMUST00000220110.2
CDS-3UTR CAA 90 bp	CAGCTGGTCTGCAGTTTGCTTCTTGCTTTGACAGAATGTCAAGTGCCTGTAGAACAATCTTCCTTCGTTTaGCAGCTTTCAGAGTTCCTA	+
Preference number: 5 (lower is better) Translates to: QLVCSLLLALTECQVPVEQSSFV*QLSEFL Trigger: TAGGAACTCTGAAAGCTGCAAAACGAAGGAAGATTG...TTCTACAGGCACTTGACATTCTGTCAAAGCAAGAAGCAAACTGCAGACCAGCTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020002.9 ENSMUST00000220110.2
CDS-3UTR CAA 90 bp	GCTTCTTGCTTTGACAGAATGTCAAGTGCCTGTAGAAATTGTCTTAAGAATGGTAACGCTTCAAAGAGATaGGCACATCTGTCATCCTGG	+
Preference number: 5 (lower is better) Translates to: ASCFDRMSSACRNCLKNGNASKR*AHLSSW Trigger: CCAGGATGACAGATGTGCCAATCTCTTTGAAGCGTT...ACCATTCTTAAGACAATTTCTACAGGCACTTGACATTCTGTCAAAGCAAGAAGC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020002.9 ENSMUST00000220110.2
CDS-3UTR CAA 90 bp	AGTTTGCTTCTTGCTTTGACAGAATGTCAAGTGCCTGTAGAAATTGTCTTAAGAAACGCTTCAAAGAGATaGGCACATCTGTCATCCTGG	+
Preference number: 5 (lower is better) Translates to: SLLLALTECQVPVEIVLRNASKR*AHLSSW Trigger: CCAGGATGACAGATGTGCCAATCTCTTTGAAGCGTT...TCTTAAGACAATTTCTACAGGCACTTGACATTCTGTCAAAGCAAGAAGCAAACT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020002.9 ENSMUST00000220110.2
CDS-3UTR CAA 90 bp	GCTTCTTGCTTTGACAGAATGTCAAGTGCCTGTAGAAATTGTCTTAAGAATGGTCAATCTTCCTTCGTTTaGCAGCTTTCAGAGTTCCTA	+
Preference number: 5 (lower is better) Translates to: ASCFDRMSSACRNCLKNGQSSFV*QLSEFL Trigger: TAGGAACTCTGAAAGCTGCAAAACGAAGGAAGATTG...ACCATTCTTAAGACAATTTCTACAGGCACTTGACATTCTGTCAAAGCAAGAAGC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020002.9 ENSMUST00000220110.2
CDS CAA 72 bp	GCAGCTTTCAGAGTTCCTACCAACGCTTCAAAGAGATaGGCACATCTGTCATCCTGGAAGAGGACCCCAAAC	+
Preference number: 6 (lower is better) Translates to: AAFRVPTNASKR*AHLSSWKRTPN Trigger: GTTTGGGGTCCTCTTCCAGGATGACAGATGTGCCAATCTCTTTGAAGCGTTGGTAGGAACTCTGAAAGCTGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000020002.9 ENSMUST00000218994.2 ENSMUST00000220110.2 ENSMUST00000220433.2
CDS CCA 72 bp	CAGCTTTCAGAGTTCCTACCAACGCTTCAAAGAGATTaGCACATCTGTCATCCTGGAAGAGGACCCCAAACT	+
Preference number: 6 (lower is better) Translates to: QLSEFLPTLQRD*HICHPGRGPQT Trigger: AGTTTGGGGTCCTCTTCCAGGATGACAGATGTGCCAATCTCTTTGAAGCGTTGGTAGGAACTCTGAAAGCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000020002.9 ENSMUST00000218994.2 ENSMUST00000220110.2 ENSMUST00000220433.2