Pregenerated sensors for ABO (Mus musculus)
Ensembl gene IDs: ENSMUSG00000015787Ensembl transcript IDs: ENSMUST00000102900.2, ENSMUST00000114045.9
Found 56 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CCCTCCTGCCTGGTCCTCCATCAGCCTCCCAGCACCAGACAAGCCTaGGTGAGGATGCACATGCCCCCAGATAACTATATGACAAGAATT | + |
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Preference number: 1 (lower is better) Translates to: PSCLVLHQPPSTRQA*VRMHMPPDNYMTRI Trigger: AATTCTTGTCATATAGTTATCTGGGGGCATGTGCATCCTCACTCAGGCTTGTCTGGTGCTGGGAGGCTGATGGAGGACCAGGCAGGAGGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000102900.2 ENSMUST00000114045.9 |
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| 3UTR-3UTR CCA 90 bp | AGTAGATGTAGCACACATCAAGTTCAGTCAGTATGTGTCTCTAAGATAGTCTGCAGTTTCATCACAGCCTaGAGTGCCACCTGGCTATCA | + |
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Preference number: 2 (lower is better) Translates to: SRCSTHQVQSVCVSKIVCSFITA*SATWLS Trigger: TGATAGCCAGGTGGCACTCCAGGCTGTGATGAAACT...GCAGACTATCTTAGAGACACATACTGACTGAACTTGATGTGTGCTACATCTACT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102900.2 ENSMUST00000114045.9 |
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| 3UTR-3UTR TCA 90 bp | AGTAGATGTAGCACACATCAAGTTCAGTCAGTATGTGTCTCTAAGATAGTCTGCCAAATAAACCAAAAATaGGCAGAGGTTATGGGCACA | + |
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Preference number: 2 (lower is better) Translates to: SRCSTHQVQSVCVSKIVCQINQK*AEVMGT Trigger: TGTGCCCATAACCTCTGCTCATTTTTGGTTTATTTG...GCAGACTATCTTAGAGACACATACTGACTGAACTTGATGTGTGCTACATCTACT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000102900.2 ENSMUST00000114045.9 |
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| 3UTR TCA 72 bp | CTGGTCCTCCATCAGCCTCCCAGCACCAGACAAGCCTaGGTGAGGATGCACATGCCCCCAGATAACTATATG | + |
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Preference number: 3 (lower is better) Translates to: LVLHQPPSTRQA*VRMHMPPDNYM Trigger: CATATAGTTATCTGGGGGCATGTGCATCCTCACTCAGGCTTGTCTGGTGCTGGGAGGCTGATGGAGGACCAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000102900.2 ENSMUST00000114045.9 |
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| 3UTR CCA 72 bp | AATTGGCTCTCAAATCCTTTTAGTTTCATCACAGCCTaGAGTGCCACCTGGCTATCAGCCTGTCCTCTCCAA | + |
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Preference number: 3 (lower is better) Translates to: NWLSNPFSFITA*SATWLSACPLQ Trigger: TTGGAGAGGACAGGCTGATAGCCAGGTGGCACTCCAGGCTGTGATGAAACTAAAAGGATTTGAGAGCCAATT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102900.2 ENSMUST00000114045.9 |
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| CDS-3UTR TCA 90 bp | GGGACACACAGTGGAGCTGAAGGTGGTTGCCACTCCAGGGCTCAAAGTGTGTGGAGGTCCCCTCCCAGATaGTGGGCGCCAGCCAAGGAG | + |
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Preference number: 4 (lower is better) Translates to: GTHSGAEGGCHSRAQSVWRSPPR*WAPAKE Trigger: CTCCTTGGCTGGCGCCCATCATCTGGGAGGGGACCT...CCACACACTTTGAGCCCTGGAGTGGCAACCACCTTCAGCTCCACTGTGTGTCCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102900.2 ENSMUST00000114045.9 |
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| CDS-3UTR GCA 90 bp | GGTCCTCCATCAGCCTCCCAGCACCAGACAAGCCTGAGTGAGGATGCACATGCCGGCCAGCCCAGCAGCTaGTGGTCCCACAAATACTCT | + |
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Preference number: 4 (lower is better) Translates to: GPPSASQHQTSLSEDAHAGQPSS*WSHKYS Trigger: AGAGTATTTGTGGGACCAGCAGCTGCTGGGCTGGCC...GGCATGTGCATCCTCACTCAGGCTTGTCTGGTGCTGGGAGGCTGATGGAGGACC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102900.2 ENSMUST00000114045.9 |
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| CDS-3UTR TCA 90 bp | GGTCCTCCATCAGCCTCCCAGCACCAGACAAGCCTGAGTGAGGATGCACATGCCATCTCAGCTTCTTCATaGTGGAGGGCCAGCCCAGCA | + |
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Preference number: 4 (lower is better) Translates to: GPPSASQHQTSLSEDAHAISASS*WRASPA Trigger: TGCTGGGCTGGCCCTCCATCATGAAGAAGCTGAGAT...GGCATGTGCATCCTCACTCAGGCTTGTCTGGTGCTGGGAGGCTGATGGAGGACC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102900.2 ENSMUST00000114045.9 |
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| CDS-3UTR TCA 90 bp | GGTCCTCCATCAGCCTCCCAGCACCAGACAAGCCTGAGTGAGGATGCACATGCCCATGGCAGGCCTTGGTaGGATGGTACACTTCTAGCA | + |
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Preference number: 4 (lower is better) Translates to: GPPSASQHQTSLSEDAHAHGRPW*DGTLLA Trigger: TGCTAGAAGTGTACCATCTCACCAAGGCCTGCCATG...GGCATGTGCATCCTCACTCAGGCTTGTCTGGTGCTGGGAGGCTGATGGAGGACC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102900.2 ENSMUST00000114045.9 |
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| CDS-3UTR TCA 90 bp | GGGACACACAGTGGAGCTGAAGGTGGTTGCCACTCCAGGGCTCAAAGTGTGTGGCACCCACATGGTCACTaGACTTCATGTCCGCATCTG | + |
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Preference number: 4 (lower is better) Translates to: GTHSGAEGGCHSRAQSVWHPHGH*TSCPHL Trigger: CAGATGCGGACATGAAGTTCAGTGACCATGTGGGTG...CCACACACTTTGAGCCCTGGAGTGGCAACCACCTTCAGCTCCACTGTGTGTCCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102900.2 ENSMUST00000114045.9 |
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| CDS-3UTR TCA 90 bp | GGTCCTCCATCAGCCTCCCAGCACCAGACAAGCCTGAGTGAGGATGCACATGCCGGAAGGATTCCAAGGTaGAGGAAGTTGCATTTCGGT | + |
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Preference number: 4 (lower is better) Translates to: GPPSASQHQTSLSEDAHAGRIPR*RKLHFG Trigger: ACCGAAATGCAACTTCCTTCACCTTGGAATCCTTCC...GGCATGTGCATCCTCACTCAGGCTTGTCTGGTGCTGGGAGGCTGATGGAGGACC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102900.2 ENSMUST00000114045.9 |
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| CDS-3UTR TCA 90 bp | GGTCCTCCATCAGCCTCCCAGCACCAGACAAGCCTGAGTGAGGATGCACATGCCAGTGCCAAAGAATGTTaGGAGAATCTCCACACCCAC | + |
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Preference number: 4 (lower is better) Translates to: GPPSASQHQTSLSEDAHASAKEC*ENLHTH Trigger: GTGGGTGTGGAGATTCTCTCAACATTCTTTGGCACT...GGCATGTGCATCCTCACTCAGGCTTGTCTGGTGCTGGGAGGCTGATGGAGGACC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102900.2 ENSMUST00000114045.9 |
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| CDS-3UTR GCA 90 bp | CTCAGTAAAAGGAGCTTAGGGACACACAGTGGAGCTGAAGGTGGTTGCCACTCCGGCCAGCCCAGCAGCTaGTGGTCCCACAAATACTCT | + |
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Preference number: 4 (lower is better) Translates to: LSKRSLGTHSGAEGGCHSGQPSS*WSHKYS Trigger: AGAGTATTTGTGGGACCAGCAGCTGCTGGGCTGGCC...GGAGTGGCAACCACCTTCAGCTCCACTGTGTGTCCCTAAGCTCCTTTTACTGAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102900.2 ENSMUST00000114045.9 |
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| CDS-3UTR CCA 90 bp | GTGGAGCTGAAGGTGGTTGCCACTCCAGGGCTCAAAGTGTGTGGTAAGCCAAGTCCTAGTCACAGCTCCTaGGTGACCCAAGTTCTGGCT | + |
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Preference number: 4 (lower is better) Translates to: VELKVVATPGLKVCGKPSPSHSS*VTQVLA Trigger: AGCCAGAACTTGGGTCACCCAGGAGCTGTGACTAGG...ACTTGGCTTACCACACACTTTGAGCCCTGGAGTGGCAACCACCTTCAGCTCCAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102900.2 ENSMUST00000114045.9 |
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| CDS-3UTR CCA 90 bp | CTCAGTAAAAGGAGCTTAGGGACACACAGTGGAGCTGAAGGTGGTTGCCACTCCCAGCCCAGCAGCTGCTaGTCCCACAAATACTCTGGG | + |
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Preference number: 4 (lower is better) Translates to: LSKRSLGTHSGAEGGCHSQPSSC*SHKYSG Trigger: CCCAGAGTATTTGTGGGACCAGCAGCTGCTGGGCTG...GGAGTGGCAACCACCTTCAGCTCCACTGTGTGTCCCTAAGCTCCTTTTACTGAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102900.2 ENSMUST00000114045.9 |
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| CDS-3UTR GCA 90 bp | GGGACACACAGTGGAGCTGAAGGTGGTTGCCACTCCAGGGCTCAAAGTGTGTGGAGCCAGGGTGCAGAGTaGCAAAGAATGTTGAGAGAA | + |
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Preference number: 4 (lower is better) Translates to: GTHSGAEGGCHSRAQSVWSQGAE*QRMLRE Trigger: TTCTCTCAACATTCTTTGGCACTCTGCACCCTGGCT...CCACACACTTTGAGCCCTGGAGTGGCAACCACCTTCAGCTCCACTGTGTGTCCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102900.2 ENSMUST00000114045.9 |
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| CDS-3UTR CCA 90 bp | GTGGAGCTGAAGGTGGTTGCCACTCCAGGGCTCAAAGTGTGTGGTAAGCCAAGTCGTCGCTCTGAGAAGTaGCTGATCATCTCCATCCTG | + |
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Preference number: 4 (lower is better) Translates to: VELKVVATPGLKVCGKPSRRSEK*LIISIL Trigger: CAGGATGGAGATGATCAGCCACTTCTCAGAGCGACG...ACTTGGCTTACCACACACTTTGAGCCCTGGAGTGGCAACCACCTTCAGCTCCAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102900.2 ENSMUST00000114045.9 |
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| CDS-3UTR TCA 90 bp | GTGGAGCTGAAGGTGGTTGCCACTCCAGGGCTCAAAGTGTGTGGTAAGCCAAGTCCAAGTTCTGGCTTCTaGAGCTTAGGAACAGGTAGC | + |
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Preference number: 4 (lower is better) Translates to: VELKVVATPGLKVCGKPSPSSGF*SLGTGS Trigger: GCTACCTGTTCCTAAGCTTCAGAAGCCAGAACTTGG...ACTTGGCTTACCACACACTTTGAGCCCTGGAGTGGCAACCACCTTCAGCTCCAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102900.2 ENSMUST00000114045.9 |
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| CDS-3UTR GCA 90 bp | GTGGAGCTGAAGGTGGTTGCCACTCCAGGGCTCAAAGTGTGTGGTAAGCCAAGTCTTCATGTCCGCATCTaGACACACCAGGTAATCCAC | + |
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Preference number: 4 (lower is better) Translates to: VELKVVATPGLKVCGKPSLHVRI*THQVIH Trigger: GTGGATTACCTGGTGTGTGCAGATGCGGACATGAAG...ACTTGGCTTACCACACACTTTGAGCCCTGGAGTGGCAACCACCTTCAGCTCCAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102900.2 ENSMUST00000114045.9 |
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| CDS-3UTR CCA 90 bp | AATCCTTTTAGTTTCATCACAGCCTGGAGTGCCACCTGGCTATCAGCCTGTCCTCAGCCCAGCAGCTGCTaGTCCCACAAATACTCTGGG | + |
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Preference number: 4 (lower is better) Translates to: NPFSFITAWSATWLSACPQPSSC*SHKYSG Trigger: CCCAGAGTATTTGTGGGACCAGCAGCTGCTGGGCTG...AGGACAGGCTGATAGCCAGGTGGCACTCCAGGCTGTGATGAAACTAAAAGGATT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102900.2 ENSMUST00000114045.9 |
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| CDS-3UTR GCA 90 bp | GGGACACACAGTGGAGCTGAAGGTGGTTGCCACTCCAGGGCTCAAAGTGTGTGGCATGAAGTGTTGTTCTaGAGTCTCAAGGAACAGCTT | + |
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Preference number: 4 (lower is better) Translates to: GTHSGAEGGCHSRAQSVWHEVLF*SLKEQL Trigger: AAGCTGTTCCTTGAGACTGCAGAACAACACTTCATG...CCACACACTTTGAGCCCTGGAGTGGCAACCACCTTCAGCTCCACTGTGTGTCCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102900.2 ENSMUST00000114045.9 |
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| CDS-3UTR CCA 90 bp | GTGGAGCTGAAGGTGGTTGCCACTCCAGGGCTCAAAGTGTGTGGTAAGCCAAGTATCTCCACACCCACATaGTCACTGAACTTCATGTCC | + |
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Preference number: 4 (lower is better) Translates to: VELKVVATPGLKVCGKPSISTPT*SLNFMS Trigger: GGACATGAAGTTCAGTGACCATGTGGGTGTGGAGAT...ACTTGGCTTACCACACACTTTGAGCCCTGGAGTGGCAACCACCTTCAGCTCCAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102900.2 ENSMUST00000114045.9 |
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| CDS-3UTR TCA 90 bp | CTCAGTAAAAGGAGCTTAGGGACACACAGTGGAGCTGAAGGTGGTTGCCACTCCAGTGCCAAAGAATGTTaGGAGAATCTCCACACCCAC | + |
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Preference number: 4 (lower is better) Translates to: LSKRSLGTHSGAEGGCHSSAKEC*ENLHTH Trigger: GTGGGTGTGGAGATTCTCTCAACATTCTTTGGCACT...GGAGTGGCAACCACCTTCAGCTCCACTGTGTGTCCCTAAGCTCCTTTTACTGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102900.2 ENSMUST00000114045.9 |
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| CDS-3UTR GCA 90 bp | CTCAGTAAAAGGAGCTTAGGGACACACAGTGGAGCTGAAGGTGGTTGCCACTCCATCATCTCCATCCTGTaGATGGACACATCCTGCCAT | + |
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Preference number: 4 (lower is better) Translates to: LSKRSLGTHSGAEGGCHSIISIL*MDTSCH Trigger: ATGGCAGGATGTGTCCATGCACAGGATGGAGATGAT...GGAGTGGCAACCACCTTCAGCTCCACTGTGTGTCCCTAAGCTCCTTTTACTGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102900.2 ENSMUST00000114045.9 |
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| CDS-3UTR TCA 90 bp | AATCCTTTTAGTTTCATCACAGCCTGGAGTGCCACCTGGCTATCAGCCTGTCCTCCAAGTTCTGGCTTCTaGAGCTTAGGAACAGGTAGC | + |
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Preference number: 4 (lower is better) Translates to: NPFSFITAWSATWLSACPPSSGF*SLGTGS Trigger: GCTACCTGTTCCTAAGCTTCAGAAGCCAGAACTTGG...AGGACAGGCTGATAGCCAGGTGGCACTCCAGGCTGTGATGAAACTAAAAGGATT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102900.2 ENSMUST00000114045.9 |
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| CDS-3UTR GCA 90 bp | AATCCTTTTAGTTTCATCACAGCCTGGAGTGCCACCTGGCTATCAGCCTGTCCTGCCATCGAGTATAGTTaGGCACAGTTAGCACCACCA | + |
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Preference number: 4 (lower is better) Translates to: NPFSFITAWSATWLSACPAIEYS*AQLAPP Trigger: TGGTGGTGCTAACTGTGCGCAACTATACTCGATGGC...AGGACAGGCTGATAGCCAGGTGGCACTCCAGGCTGTGATGAAACTAAAAGGATT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102900.2 ENSMUST00000114045.9 |
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| CDS-3UTR GCA 90 bp | AATCCTTTTAGTTTCATCACAGCCTGGAGTGCCACCTGGCTATCAGCCTGTCCTCTTCATGTCCGCATCTaGACACACCAGGTAATCCAC | + |
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Preference number: 4 (lower is better) Translates to: NPFSFITAWSATWLSACPLHVRI*THQVIH Trigger: GTGGATTACCTGGTGTGTGCAGATGCGGACATGAAG...AGGACAGGCTGATAGCCAGGTGGCACTCCAGGCTGTGATGAAACTAAAAGGATT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102900.2 ENSMUST00000114045.9 |
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| CDS-3UTR CCA 90 bp | ACAATTGGCTCTCAAATCCTTTTAGTTTCATCACAGCCTGGAGTGCCACCTGGCCGTCGCTCTGAGAAGTaGCTGATCATCTCCATCCTG | + |
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Preference number: 4 (lower is better) Translates to: TIGSQILLVSSQPGVPPGRRSEK*LIISIL Trigger: CAGGATGGAGATGATCAGCCACTTCTCAGAGCGACG...GCCAGGTGGCACTCCAGGCTGTGATGAAACTAAAAGGATTTGAGAGCCAATTGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102900.2 ENSMUST00000114045.9 |
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| CDS-3UTR CCA 90 bp | AGGATGACAATTGGCTCTCAAATCCTTTTAGTTTCATCACAGCCTGGAGTGCCAGTAGGCCTGGGACTGTaGCCGGCGCTCATAGGTAAA | + |
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Preference number: 4 (lower is better) Translates to: RMTIGSQILLVSSQPGVPVGLGL*PALIGK Trigger: TTTACCTATGAGCGCCGGCCACAGTCCCAGGCCTAC...TGGCACTCCAGGCTGTGATGAAACTAAAAGGATTTGAGAGCCAATTGTCATCCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102900.2 ENSMUST00000114045.9 |
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| CDS-3UTR TCA 90 bp | AGGATGACAATTGGCTCTCAAATCCTTTTAGTTTCATCACAGCCTGGAGTGCCAATCTCAGCTTCTTCATaGTGGAGGGCCAGCCCAGCA | + |
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Preference number: 4 (lower is better) Translates to: RMTIGSQILLVSSQPGVPISASS*WRASPA Trigger: TGCTGGGCTGGCCCTCCATCATGAAGAAGCTGAGAT...TGGCACTCCAGGCTGTGATGAAACTAAAAGGATTTGAGAGCCAATTGTCATCCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102900.2 ENSMUST00000114045.9 |
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| CDS-3UTR CCA 90 bp | AGTAGATGTAGCACACATCAAGTTCAGTCAGTATGTGTCTCTAAGATAGTCTGCGTAGGCCTGGGACTGTaGCCGGCGCTCATAGGTAAA | + |
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Preference number: 4 (lower is better) Translates to: SRCSTHQVQSVCVSKIVCVGLGL*PALIGK Trigger: TTTACCTATGAGCGCCGGCCACAGTCCCAGGCCTAC...GCAGACTATCTTAGAGACACATACTGACTGAACTTGATGTGTGCTACATCTACT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102900.2 ENSMUST00000114045.9 |
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| CDS-3UTR GCA 90 bp | AATCCTTTTAGTTTCATCACAGCCTGGAGTGCCACCTGGCTATCAGCCTGTCCTCATGAAGTGTTGTTCTaGAGTCTCAAGGAACAGCTT | + |
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Preference number: 4 (lower is better) Translates to: NPFSFITAWSATWLSACPHEVLF*SLKEQL Trigger: AAGCTGTTCCTTGAGACTGCAGAACAACACTTCATG...AGGACAGGCTGATAGCCAGGTGGCACTCCAGGCTGTGATGAAACTAAAAGGATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102900.2 ENSMUST00000114045.9 |
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| CDS-3UTR CCA 90 bp | AGTAGATGTAGCACACATCAAGTTCAGTCAGTATGTGTCTCTAAGATAGTCTGCCCTAGTCACAGCTCCTaGGTGACCCAAGTTCTGGCT | + |
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Preference number: 4 (lower is better) Translates to: SRCSTHQVQSVCVSKIVCPSHSS*VTQVLA Trigger: AGCCAGAACTTGGGTCACCCAGGAGCTGTGACTAGG...GCAGACTATCTTAGAGACACATACTGACTGAACTTGATGTGTGCTACATCTACT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102900.2 ENSMUST00000114045.9 |
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| CDS-3UTR TCA 90 bp | AGGATGACAATTGGCTCTCAAATCCTTTTAGTTTCATCACAGCCTGGAGTGCCAGGAAGGATTCCAAGGTaGAGGAAGTTGCATTTCGGT | + |
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Preference number: 4 (lower is better) Translates to: RMTIGSQILLVSSQPGVPGRIPR*RKLHFG Trigger: ACCGAAATGCAACTTCCTTCACCTTGGAATCCTTCC...TGGCACTCCAGGCTGTGATGAAACTAAAAGGATTTGAGAGCCAATTGTCATCCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102900.2 ENSMUST00000114045.9 |
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| CDS-3UTR TCA 90 bp | AGTAGATGTAGCACACATCAAGTTCAGTCAGTATGTGTCTCTAAGATAGTCTGCCACCCACATGGTCACTaGACTTCATGTCCGCATCTG | + |
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Preference number: 4 (lower is better) Translates to: SRCSTHQVQSVCVSKIVCHPHGH*TSCPHL Trigger: CAGATGCGGACATGAAGTTCAGTGACCATGTGGGTG...GCAGACTATCTTAGAGACACATACTGACTGAACTTGATGTGTGCTACATCTACT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102900.2 ENSMUST00000114045.9 |
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| CDS-3UTR TCA 90 bp | AGTAGATGTAGCACACATCAAGTTCAGTCAGTATGTGTCTCTAAGATAGTCTGCCATGGCAGGCCTTGGTaGGATGGTACACTTCTAGCA | + |
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Preference number: 4 (lower is better) Translates to: SRCSTHQVQSVCVSKIVCHGRPW*DGTLLA Trigger: TGCTAGAAGTGTACCATCTCACCAAGGCCTGCCATG...GCAGACTATCTTAGAGACACATACTGACTGAACTTGATGTGTGCTACATCTACT 46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102900.2 ENSMUST00000114045.9 |
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| CDS-3UTR GCA 90 bp | AATCCTTTTAGTTTCATCACAGCCTGGAGTGCCACCTGGCTATCAGCCTGTCCTTTCCGAATCCTGAACTaGTCATTCAATATGTCGATG | + |
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Preference number: 4 (lower is better) Translates to: NPFSFITAWSATWLSACPFRILN*SFNMSM Trigger: CATCGACATATTGAATGAGCAGTTCAGGATTCGGAA...AGGACAGGCTGATAGCCAGGTGGCACTCCAGGCTGTGATGAAACTAAAAGGATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102900.2 ENSMUST00000114045.9 |
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| CDS-3UTR GCA 90 bp | ACAATTGGCTCTCAAATCCTTTTAGTTTCATCACAGCCTGGAGTGCCACCTGGCTTCCGAATCCTGAACTaGTCATTCAATATGTCGATG | + |
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Preference number: 4 (lower is better) Translates to: TIGSQILLVSSQPGVPPGFRILN*SFNMSM Trigger: CATCGACATATTGAATGAGCAGTTCAGGATTCGGAA...GCCAGGTGGCACTCCAGGCTGTGATGAAACTAAAAGGATTTGAGAGCCAATTGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102900.2 ENSMUST00000114045.9 |
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| CDS-3UTR GCA 90 bp | AGTAGATGTAGCACACATCAAGTTCAGTCAGTATGTGTCTCTAAGATAGTCTGCAGCCAGGGTGCAGAGTaGCAAAGAATGTTGAGAGAA | + |
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Preference number: 4 (lower is better) Translates to: SRCSTHQVQSVCVSKIVCSQGAE*QRMLRE Trigger: TTCTCTCAACATTCTTTGGCACTCTGCACCCTGGCT...GCAGACTATCTTAGAGACACATACTGACTGAACTTGATGTGTGCTACATCTACT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102900.2 ENSMUST00000114045.9 |
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| CDS-3UTR GCA 90 bp | AGTAGATGTAGCACACATCAAGTTCAGTCAGTATGTGTCTCTAAGATAGTCTGCCAAGGTGAAGGAAGTTaGATTTCGGTCTTCCCAACC | + |
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Preference number: 4 (lower is better) Translates to: SRCSTHQVQSVCVSKIVCQGEGS*ISVFPT Trigger: GGTTGGGAAGACCGAAATGCAACTTCCTTCACCTTG...GCAGACTATCTTAGAGACACATACTGACTGAACTTGATGTGTGCTACATCTACT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114045.9 |
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| CDS TCA 90 bp | TCGGCTGCTACTGTAGAAGCCAGGGTGCAGAGTGCCAAAGAATGTTaGGAGAATCTCCACACCCACATGGTCACTGAACTTCATGTCCGC | + |
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Preference number: 5 (lower is better) Translates to: SAATVEARVQSAKEC*ENLHTHMVTELHVR Trigger: GCGGACATGAAGTTCAGTGACCATGTGGGTGTGGAGATTCTCTCAACATTCTTTGGCACTCTGCACCCTGGCTTCTACAGTAGCAGCCGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102900.2 ENSMUST00000114045.9 |
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| CDS TCA 90 bp | GAGTGCCAAAGAATGTTGAGAGAATCTCCACACCCACATGGTCACTaGACTTCATGTCCGCATCTGCACACACCAGGTAATCCACCTCAC | + |
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Preference number: 5 (lower is better) Translates to: ECQRMLRESPHPHGH*TSCPHLHTPGNPPH Trigger: GTGAGGTGGATTACCTGGTGTGTGCAGATGCGGACATGAAGTTCAGTGACCATGTGGGTGTGGAGATTCTCTCAACATTCTTTGGCACTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102900.2 ENSMUST00000114045.9 |
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| CDS-3UTR CAA 90 bp | AGGATGACAATTGGCTCTCAAATCCTTTTAGTTTCATCACAGCCTGGAGTGCCATCAATGCCGTTGGCCTaGTCCTCCATCATAGCTTCA | + |
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Preference number: 5 (lower is better) Translates to: RMTIGSQILLVSSQPGVPSMPLA*SSIIAS Trigger: TGAAGCTATGATGGAGGACAAGGCCAACGGCATTGA...TGGCACTCCAGGCTGTGATGAAACTAAAAGGATTTGAGAGCCAATTGTCATCCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102900.2 ENSMUST00000114045.9 |
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| CDS-3UTR CAA 90 bp | AGTAGATGTAGCACACATCAAGTTCAGTCAGTATGTGTCTCTAAGATAGTCTGCTCAATGCCGTTGGCCTaGTCCTCCATCATAGCTTCA | + |
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Preference number: 5 (lower is better) Translates to: SRCSTHQVQSVCVSKIVCSMPLA*SSIIAS Trigger: TGAAGCTATGATGGAGGACAAGGCCAACGGCATTGA...GCAGACTATCTTAGAGACACATACTGACTGAACTTGATGTGTGCTACATCTACT 44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102900.2 ENSMUST00000114045.9 |
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| CDS GCA 90 bp | ATAGCAAATACAGTCAGTCCAATCGTAGTATTCCGAATCCTGAACTaGTCATTCAATATGTCGATGTTGAAGGTCCCCTCCCAGATGATG | + |
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Preference number: 5 (lower is better) Translates to: IANTVSPIVVFRILN*SFNMSMLKVPSQMM Trigger: CATCATCTGGGAGGGGACCTTCAACATCGACATATTGAATGAGCAGTTCAGGATTCGGAATACTACGATTGGACTGACTGTATTTGCTAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102900.2 ENSMUST00000114045.9 |
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| CDS GCA 90 bp | GAAGACATAGTAGATGACCTTGTGTCCCACCATGAAGTGTTGTTCTaGAGTCTCAAGGAACAGCTTAAGGAACACCACATACTTTTTGAT | + |
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Preference number: 5 (lower is better) Translates to: EDIVDDLVSHHEVLF*SLKEQLKEHHILFD Trigger: ATCAAAAAGTATGTGGTGTTCCTTAAGCTGTTCCTTGAGACTGCAGAACAACACTTCATGGTGGGACACAAGGTCATCTACTATGTCTTC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000102900.2 ENSMUST00000114045.9 |
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| CDS TCA 72 bp | CCACCTCACGTAGAAAGCGTCGCTCTGAGAAGTGGCTaGTCATCTCCATCCTGTGCATGGACACATCCTGCC | + |
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Preference number: 6 (lower is better) Translates to: PPHVESVALRSG*SSPSCAWTHPA Trigger: GGCAGGATGTGTCCATGCACAGGATGGAGATGATCAGCCACTTCTCAGAGCGACGCTTTCTACGTGAGGTGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102900.2 ENSMUST00000114045.9 |
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| CDS GCA 72 bp | TCCTGTGCATGGACACATCCTGCCATCGAGTATAGTTaGGCACAGTTAGCACCACCAGTTGCCGTCCTGCAC | + |
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Preference number: 6 (lower is better) Translates to: SCAWTHPAIEYS*AQLAPPVAVLH Trigger: GTGCAGGACGGCAACTGGTGGTGCTAACTGTGCGCAACTATACTCGATGGCAGGATGTGTCCATGCACAGGA 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102900.2 ENSMUST00000114045.9 |
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| CDS CCA 72 bp | CCGTCCTGCACCCAGGATCACCTGTGGCACATCAGCTaGACGGTCAGTGAAGACATAGTAGATGACCTTGTG | + |
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Preference number: 6 (lower is better) Translates to: PSCTQDHLWHIS*TVSEDIVDDLV Trigger: CACAAGGTCATCTACTATGTCTTCACTGACCGTCCAGCTGATGTGCCACAGGTGATCCTGGGTGCAGGACGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102900.2 ENSMUST00000114045.9 |
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| CDS CAA 72 bp | CTCTCATCATGCCACACAGGCTCAATGCCGTTGGCCTaGTCCTCCATCATAGCTTCATGGCAGGCCTTGGTG | + |
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Preference number: 6 (lower is better) Translates to: LSSCHTGSMPLA*SSIIASWQALV Trigger: CACCAAGGCCTGCCATGAAGCTATGATGGAGGACAAGGCCAACGGCATTGAGCCTGTGTGGCATGATGAGAG 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102900.2 ENSMUST00000114045.9 |
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| CDS CCA 72 bp | GTGCCAAAGAATGTTGAGAGAATCTCCACACCCACATaGTCACTGAACTTCATGTCCGCATCTGCACACACC | + |
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Preference number: 6 (lower is better) Translates to: VPKNVERISTPT*SLNFMSASAHT Trigger: GGTGTGTGCAGATGCGGACATGAAGTTCAGTGACCATGTGGGTGTGGAGATTCTCTCAACATTCTTTGGCAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102900.2 ENSMUST00000114045.9 |
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| CDS TCA 72 bp | ACTGTAGAAGCCAGGGTGCAGAGTGCCAAAGAATGTTaGGAGAATCTCCACACCCACATGGTCACTGAACTT | + |
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Preference number: 6 (lower is better) Translates to: TVEARVQSAKEC*ENLHTHMVTEL Trigger: AAGTTCAGTGACCATGTGGGTGTGGAGATTCTCTCAACATTCTTTGGCACTCTGCACCCTGGCTTCTACAGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102900.2 ENSMUST00000114045.9 |
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| CDS GCA 72 bp | ACAGTCAGTCCAATCGTAGTATTCCGAATCCTGAACTaGTCATTCAATATGTCGATGTTGAAGGTCCCCTCC | + |
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Preference number: 6 (lower is better) Translates to: TVSPIVVFRILN*SFNMSMLKVPS Trigger: GGAGGGGACCTTCAACATCGACATATTGAATGAGCAGTTCAGGATTCGGAATACTACGATTGGACTGACTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102900.2 ENSMUST00000114045.9 |
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| CDS CAA 90 bp | GTCAGTGAAGACATAGTAGATGACCTTGTGTCCCACCATGAAGTGTaGTTCTGCAGTCTCAAGGAACAGCTTAAGGAACACCACATACTT | + |
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Preference number: 6 (lower is better) Translates to: VSEDIVDDLVSHHEV*FCSLKEQLKEHHIL Trigger: AAGTATGTGGTGTTCCTTAAGCTGTTCCTTGAGACTGCAGAACAACACTTCATGGTGGGACACAAGGTCATCTACTATGTCTTCACTGAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102900.2 ENSMUST00000114045.9 |
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| CDS CAA 90 bp | TGTTCTGCAGTCTCAAGGAACAGCTTAAGGAACACCACATACTTTTaGATAGCAAATACAGTCAGTCCAATCGTAGTATTCCGAATCCTG | + |
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Preference number: 6 (lower is better) Translates to: CSAVSRNSLRNTTYF*IANTVSPIVVFRIL Trigger: CAGGATTCGGAATACTACGATTGGACTGACTGTATTTGCTATCAAAAAGTATGTGGTGTTCCTTAAGCTGTTCCTTGAGACTGCAGAACA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102900.2 ENSMUST00000114045.9 |
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| CDS CAA 72 bp | GTCTCAAGGAACAGCTTAAGGAACACCACATACTTTTaGATAGCAAATACAGTCAGTCCAATCGTAGTATTC | + |
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Preference number: 6 (lower is better) Translates to: VSRNSLRNTTYF*IANTVSPIVVF Trigger: GAATACTACGATTGGACTGACTGTATTTGCTATCAAAAAGTATGTGGTGTTCCTTAAGCTGTTCCTTGAGAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102900.2 ENSMUST00000114045.9 |
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