RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ABLIM3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000032735

Ensembl transcript IDs: ENSMUST00000049378.15, ENSMUST00000166783.3

Found 286 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp ACCACGGTGTGTGAACACTTCGTGGCCGGCGTCAGCCCTGGAGACTaGGGGAAGGTCCTGAAGCAGGGAGTAGAGGCTCCTCCAGGCACC +
Preference number: 1 (lower is better)
Translates to: TTVCEHFVAGVSPGD*GKVLKQGVEAPPGT
Trigger: GGTGCCTGGAGGAGCCTCTACTCCCTGCTTCAGGACCTTCCCCCAGTCTCCAGGGCTGACGCCGGCCACGAAGTGTTCACACACCGTGGT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
3UTR GCA 90 bp GAATTCTTTACGAGGCCTCAAAGGTGCTCGCTGATTTGGGTGGATTaGCACGGACCTCCCACCGGAGGGCCCATCCGTGACCACGGTGTG +
Preference number: 1 (lower is better)
Translates to: EFFTRPQRCSLIWVD*HGPPTGGPIRDHGV
Trigger: CACACCGTGGTCACGGATGGGCCCTCCGGTGGGAGGTCCGTGGCAATCCACCCAAATCAGCGAGCACCTTTGAGGCCTCGTAAAGAATTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
3UTR TCA 90 bp TGGATGTGTGAAGAGAATTCTTTACGAGGCCTCAAAGGTGCTCGCTaGTTTGGGTGGATTGCCACGGACCTCCCACCGGAGGGCCCATCC +
Preference number: 1 (lower is better)
Translates to: WMCEENSLRGLKGAR*FGWIATDLPPEGPS
Trigger: GGATGGGCCCTCCGGTGGGAGGTCCGTGGCAATCCACCCAAATCAGCGAGCACCTTTGAGGCCTCGTAAAGAATTCTCTTCACACATCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
3UTR CCA 90 bp CGAGAGTCAGTCCCTGAGGCCACCGGGAAAGAACATGAGCAGTGTTaGTCAAGGCCTCATTCTGGAATCCTCTCAACAGTCACCCTTCGG +
Preference number: 1 (lower is better)
Translates to: RESVPEATGKEHEQC*SRPHSGILSTVTLR
Trigger: CCGAAGGGTGACTGTTGAGAGGATTCCAGAATGAGGCCTTGACCAACACTGCTCATGTTCTTTCCCGGTGGCCTCAGGGACTGACTCTCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
3UTR CCA 90 bp TTTGGGGTGTGGCCTATTCTCCCTGCACAGGGTGGTGAGTGTGTCTaGTTGCTTGCTGGAGCTTATTGTGGGAACATTAGCCCTGTGGTG +
Preference number: 1 (lower is better)
Translates to: FGVWPILPAQGGECV*LLAGAYCGNISPVV
Trigger: CACCACAGGGCTAATGTTCCCACAATAAGCTCCAGCAAGCAACCAGACACACTCACCACCCTGTGCAGGGAGAATAGGCCACACCCCAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
3UTR TCA 90 bp TTGCAGTCCCTCCGCCCCGTCACCCTTCCAATGTGCAGATTCTTCTaGTCCTTTTTGATTTCTGCTCGCATGCAACCTCTTCCAGAAGCC +
Preference number: 1 (lower is better)
Translates to: LQSLRPVTLPMCRFF*SFLISARMQPLPEA
Trigger: GGCTTCTGGAAGAGGTTGCATGCGAGCAGAAATCAAAAAGGATCAGAAGAATCTGCACATTGGAAGGGTGACGGGGCGGAGGGACTGCAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
3UTR GCA 90 bp ACGTCACACACACTTTCTCAGGCCTCCGTCCGTCACGTTCTGCCTTaGATCCGTTACGTTACGTTACGTTACGTTACGTTACGTCTGGCA +
Preference number: 1 (lower is better)
Translates to: TSHTLSQASVRHVLP*IRYVTLRYVTLRLA
Trigger: TGCCAGACGTAACGTAACGTAACGTAACGTAACGTAACGGATGCAAGGCAGAACGTGACGGACGGAGGCCTGAGAAAGTGTGTGTGACGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
3UTR GCA 90 bp CAGCAACGTCACACACACTTTCTCAGGCCTCCGTCCGTCACGTTCTaGCTTGCATCCGTTACGTTACGTTACGTTACGTTACGTTACGTC +
Preference number: 1 (lower is better)
Translates to: QQRHTHFLRPPSVTF*LASVTLRYVTLRYV
Trigger: GACGTAACGTAACGTAACGTAACGTAACGTAACGGATGCAAGGCAGAACGTGACGGACGGAGGCCTGAGAAAGTGTGTGTGACGTTGCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
3UTR TCA 90 bp GCGGGTGGTAGAGGGAAGGGAAGTGCCTTTTTCCGTTTCCTACCATaGATTCTAGATTTGCATGAGGGAGTGCTTAGGACCAAGGGTGGA +
Preference number: 1 (lower is better)
Translates to: AGGRGKGSAFFRFLP*ILDLHEGVLRTKGG
Trigger: TCCACCCTTGGTCCTAAGCACTCCCTCATGCAAATCTAGAATTCATGGTAGGAAACGGAAAAAGGCACTTCCCTTCCCTCTACCACCCGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
3UTR CCA 90 bp TCCAAGAGGGAACAGCTACCACTGATCAATGACTCAGAATTGAAGTaGGGGTGTGAGAAGGCTCTGTTCTCCCTTGTCCCAGAAAGCACG +
Preference number: 1 (lower is better)
Translates to: SKREQLPLINDSELK*GCEKALFSLVPEST
Trigger: CGTGCTTTCTGGGACAAGGGAGAACAGAGCCTTCTCACACCCCCACTTCAATTCTGAGTCATTGATCAGTGGTAGCTGTTCCCTCTTGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
3UTR-3UTR CCA 90 bp ACGTCACACACACTTTCTCAGGCCTCCGTCCGTCACGTTCTGCCTTGCATCCGTGGCCGGCGTCAGCCCTaGAGACTGGGGGAAGGTCCT +
Preference number: 2 (lower is better)
Translates to: TSHTLSQASVRHVLPCIRGRRQP*RLGEGP
Trigger: AGGACCTTCCCCCAGTCTCCAGGGCTGACGCCGGCC...ACGGATGCAAGGCAGAACGTGACGGACGGAGGCCTGAGAAAGTGTGTGTGACGT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
3UTR-3UTR CCA 90 bp ATTAAACGTCCCTTGCAGTCCCTCCGCCCCGTCACCCTTCCAATGTGCAGATTCGGCCGGCGTCAGCCCTaGAGACTGGGGGAAGGTCCT +
Preference number: 2 (lower is better)
Translates to: IKRPLQSLRPVTLPMCRFGRRQP*RLGEGP
Trigger: AGGACCTTCCCCCAGTCTCCAGGGCTGACGCCGGCC...GAATCTGCACATTGGAAGGGTGACGGGGCGGAGGGACTGCAAGGGACGTTTAAT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
3UTR-3UTR TCA 90 bp CTTCAGCAACGTCACACACACTTTCTCAGGCCTCCGTCCGTCACGTTCTGCCTTCGGAGGGCCCATCCGTaGCCACGGTGTGTGAACACT +
Preference number: 2 (lower is better)
Translates to: LQQRHTHFLRPPSVTFCLRRAHP*PRCVNT
Trigger: AGTGTTCACACACCGTGGTCACGGATGGGCCCTCCG...AAGGCAGAACGTGACGGACGGAGGCCTGAGAAAGTGTGTGTGACGTTGCTGAAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
3UTR-3UTR TCA 90 bp AATGACTCAGAATTGAAGTGGGGGTGTGAGAAGGCTCTGTTCTCCCTTGTCCCAGGGTGCTGGGACCACTaGGGTGGGGGAGAGGAGCCG +
Preference number: 2 (lower is better)
Translates to: NDSELKWGCEKALFSLVPGCWDH*GGGEEP
Trigger: CGGCTCCTCTCCCCCACCTCAGTGGTCCCAGCACCC...TGGGACAAGGGAGAACAGAGCCTTCTCACACCCCCACTTCAATTCTGAGTCATT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
3UTR-3UTR CCA 90 bp ATTAAACGTCCCTTGCAGTCCCTCCGCCCCGTCACCCTTCCAATGTGCAGATTCGTCAGCCCTGGAGACTaGGGGAAGGTCCTGAAGCAG +
Preference number: 2 (lower is better)
Translates to: IKRPLQSLRPVTLPMCRFVSPGD*GKVLKQ
Trigger: CTGCTTCAGGACCTTCCCCCAGTCTCCAGGGCTGAC...GAATCTGCACATTGGAAGGGTGACGGGGCGGAGGGACTGCAAGGGACGTTTAAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
3UTR-3UTR TCA 90 bp CGTCACACACACTTTCTCAGGCCTCCGTCCGTCACGTTCTGCCTTGCATCCGTTGGTGGGGGTCTGATATaGATGTCTTGCCCTCTAGGG +
Preference number: 2 (lower is better)
Translates to: RHTHFLRPPSVTFCLASVGGGLI*MSCPLG
Trigger: CCCTAGAGGGCAAGACATTCATATCAGACCCCCACC...AACGGATGCAAGGCAGAACGTGACGGACGGAGGCCTGAGAAAGTGTGTGTGACG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
3UTR-3UTR TCA 90 bp ACGTCACACACACTTTCTCAGGCCTCCGTCCGTCACGTTCTGCCTTGCATCCGTCACCGGGAAAGAACATaGGCAGTGTTGGTCAAGGCC +
Preference number: 2 (lower is better)
Translates to: TSHTLSQASVRHVLPCIRHRERT*AVLVKA
Trigger: GGCCTTGACCAACACTGCTCATGTTCTTTCCCGGTG...ACGGATGCAAGGCAGAACGTGACGGACGGAGGCCTGAGAAAGTGTGTGTGACGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
3UTR CAA 90 bp GGGGTGTGGCCTATTCTCCCTGCACAGGGTGGTGAGTGTGTCTGGTaGCTTGCTGGAGCTTATTGTGGGAACATTAGCCCTGTGGTGTGT +
Preference number: 2 (lower is better)
Translates to: GVWPILPAQGGECVW*LAGAYCGNISPVVC
Trigger: ACACACCACAGGGCTAATGTTCCCACAATAAGCTCCAGCAAGCAACCAGACACACTCACCACCCTGTGCAGGGAGAATAGGCCACACCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
3UTR-3UTR CCA 90 bp TTGCGGGTGGTAGAGGGAAGGGAAGTGCCTTTTTCCGTTTCCTACCATGAATTCGTCAGCCCTGGAGACTaGGGGAAGGTCCTGAAGCAG +
Preference number: 2 (lower is better)
Translates to: LRVVEGREVPFSVSYHEFVSPGD*GKVLKQ
Trigger: CTGCTTCAGGACCTTCCCCCAGTCTCCAGGGCTGAC...GAATTCATGGTAGGAAACGGAAAAAGGCACTTCCCTTCCCTCTACCACCCGCAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
3UTR-3UTR CCA 90 bp ACGTCACACACACTTTCTCAGGCCTCCGTCCGTCACGTTCTGCCTTGCATCCGTGACTCAGAATTGAAGTaGGGGTGTGAGAAGGCTCTG +
Preference number: 2 (lower is better)
Translates to: TSHTLSQASVRHVLPCIRDSELK*GCEKAL
Trigger: CAGAGCCTTCTCACACCCCCACTTCAATTCTGAGTC...ACGGATGCAAGGCAGAACGTGACGGACGGAGGCCTGAGAAAGTGTGTGTGACGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
3UTR CAA 90 bp TCCTTTTTGATTTCTGCTCGCATGCAACCTCTTCCAGAAGCCTCCTaGGGTCTGCACCAGCTGCACACGCCTTCAGCAACGTCACACACA +
Preference number: 2 (lower is better)
Translates to: SFLISARMQPLPEAS*GLHQLHTPSATSHT
Trigger: TGTGTGTGACGTTGCTGAAGGCGTGTGCAGCTGGTGCAGACCCAAGGAGGCTTCTGGAAGAGGTTGCATGCGAGCAGAAATCAAAAAGGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
3UTR-3UTR TCA 90 bp ATCAATGACTCAGAATTGAAGTGGGGGTGTGAGAAGGCTCTGTTCTCCCTTGTCCCCTGCACAGGGTGGTaGGTGTGTCTGGTTGCTTGC +
Preference number: 2 (lower is better)
Translates to: INDSELKWGCEKALFSLVPCTGW*VCLVAC
Trigger: GCAAGCAACCAGACACACTCACCACCCTGTGCAGGG...GACAAGGGAGAACAGAGCCTTCTCACACCCCCACTTCAATTCTGAGTCATTGAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
3UTR-3UTR GCA 90 bp TTGCGGGTGGTAGAGGGAAGGGAAGTGCCTTTTTCCGTTTCCTACCATGAATTCCTGATTTGGGTGGATTaGCACGGACCTCCCACCGGA +
Preference number: 2 (lower is better)
Translates to: LRVVEGREVPFSVSYHEFLIWVD*HGPPTG
Trigger: TCCGGTGGGAGGTCCGTGGCAATCCACCCAAATCAG...GAATTCATGGTAGGAAACGGAAAAAGGCACTTCCCTTCCCTCTACCACCCGCAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
3UTR-3UTR CCA 90 bp CTTCAGCAACGTCACACACACTTTCTCAGGCCTCCGTCCGTCACGTTCTGCCTTAATACCTCGATGATGTaGGCTCGCCTGACAGTACAG +
Preference number: 2 (lower is better)
Translates to: LQQRHTHFLRPPSVTFCLNTSMM*ARLTVQ
Trigger: CTGTACTGTCAGGCGAGCCCACATCATCGAGGTATT...AAGGCAGAACGTGACGGACGGAGGCCTGAGAAAGTGTGTGTGACGTTGCTGAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
3UTR-3UTR CCA 90 bp GACTCAGAATTGAAGTGGGGGTGTGAGAAGGCTCTGTTCTCCCTTGTCCCAGAAAGGAGAGCCAGTTCTTaGGGACTCAAGGTGGGACAG +
Preference number: 2 (lower is better)
Translates to: DSELKWGCEKALFSLVPERRASS*GLKVGQ
Trigger: CTGTCCCACCTTGAGTCCCCAAGAACTGGCTCTCCT...TTCTGGGACAAGGGAGAACAGAGCCTTCTCACACCCCCACTTCAATTCTGAGTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
3UTR-3UTR CCA 90 bp CCTTGTCCCAGAAAGCACGAGAGTCAGTCCCTGAGGCCACCGGGAAAGAACATGGGAACATTAGCCCTGTaGTGTGTAGATCATCAGGCA +
Preference number: 2 (lower is better)
Translates to: PCPRKHESQSLRPPGKNMGTLAL*CVDHQA
Trigger: TGCCTGATGATCTACACACCACAGGGCTAATGTTCC...CATGTTCTTTCCCGGTGGCCTCAGGGACTGACTCTCGTGCTTTCTGGGACAAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
3UTR CAA 90 bp TGTGGCCTATTCTCCCTGCACAGGGTGGTGAGTGTGTCTGGTTGCTaGCTGGAGCTTATTGTGGGAACATTAGCCCTGTGGTGTGTAGAT +
Preference number: 2 (lower is better)
Translates to: CGLFSLHRVVSVSGC*LELIVGTLALWCVD
Trigger: ATCTACACACCACAGGGCTAATGTTCCCACAATAAGCTCCAGCAAGCAACCAGACACACTCACCACCCTGTGCAGGGAGAATAGGCCACA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
3UTR CAA 90 bp AACGTCACACACACTTTCTCAGGCCTCCGTCCGTCACGTTCTGCCTaGCATCCGTTACGTTACGTTACGTTACGTTACGTTACGTCTGGC +
Preference number: 2 (lower is better)
Translates to: NVTHTFSGLRPSRSA*HPLRYVTLRYVTSG
Trigger: GCCAGACGTAACGTAACGTAACGTAACGTAACGTAACGGATGCAAGGCAGAACGTGACGGACGGAGGCCTGAGAAAGTGTGTGTGACGTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
3UTR-3UTR CCA 90 bp CCTTGTCCCAGAAAGCACGAGAGTCAGTCCCTGAGGCCACCGGGAAAGAACATGCTTGGGGACTCAAGGTaGGACAGATGTTTCAGTATA +
Preference number: 2 (lower is better)
Translates to: PCPRKHESQSLRPPGKNMLGDSR*DRCFSI
Trigger: TATACTGAAACATCTGTCCCACCTTGAGTCCCCAAG...CATGTTCTTTCCCGGTGGCCTCAGGGACTGACTCTCGTGCTTTCTGGGACAAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
3UTR-3UTR CCA 90 bp ATTAAACGTCCCTTGCAGTCCCTCCGCCCCGTCACCCTTCCAATGTGCAGATTCGGAACATTAGCCCTGTaGTGTGTAGATCATCAGGCA +
Preference number: 2 (lower is better)
Translates to: IKRPLQSLRPVTLPMCRFGTLAL*CVDHQA
Trigger: TGCCTGATGATCTACACACCACAGGGCTAATGTTCC...GAATCTGCACATTGGAAGGGTGACGGGGCGGAGGGACTGCAAGGGACGTTTAAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
3UTR-3UTR CCA 90 bp ACGTCACACACACTTTCTCAGGCCTCCGTCCGTCACGTTCTGCCTTGCATCCGTTGTCTGGTTGCTTGCTaGAGCTTATTGTGGGAACAT +
Preference number: 2 (lower is better)
Translates to: TSHTLSQASVRHVLPCIRCLVAC*SLLWEH
Trigger: ATGTTCCCACAATAAGCTCCAGCAAGCAACCAGACA...ACGGATGCAAGGCAGAACGTGACGGACGGAGGCCTGAGAAAGTGTGTGTGACGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
3UTR-3UTR CCA 90 bp CTTCAGCAACGTCACACACACTTTCTCAGGCCTCCGTCCGTCACGTTCTGCCTTGCCAAGATTTTTCTTTaGGGTGTGGCCTATTCTCCC +
Preference number: 2 (lower is better)
Translates to: LQQRHTHFLRPPSVTFCLAKIFL*GVAYSP
Trigger: GGGAGAATAGGCCACACCCCAAAGAAAAATCTTGGC...AAGGCAGAACGTGACGGACGGAGGCCTGAGAAAGTGTGTGTGACGTTGCTGAAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
3UTR-3UTR CCA 90 bp CTTCAGCAACGTCACACACACTTTCTCAGGCCTCCGTCCGTCACGTTCTGCCTTGTCAAGGCCTCATTCTaGAATCCTCTCAACAGTCAC +
Preference number: 2 (lower is better)
Translates to: LQQRHTHFLRPPSVTFCLVKASF*NPLNSH
Trigger: GTGACTGTTGAGAGGATTCCAGAATGAGGCCTTGAC...AAGGCAGAACGTGACGGACGGAGGCCTGAGAAAGTGTGTGTGACGTTGCTGAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
3UTR CAA 90 bp GGCATCTCCAAGAGGGAACAGCTACCACTGATCAATGACTCAGAATaGAAGTGGGGGTGTGAGAAGGCTCTGTTCTCCCTTGTCCCAGAA +
Preference number: 2 (lower is better)
Translates to: GISKREQLPLINDSE*KWGCEKALFSLVPE
Trigger: TTCTGGGACAAGGGAGAACAGAGCCTTCTCACACCCCCACTTCAATTCTGAGTCATTGATCAGTGGTAGCTGTTCCCTCTTGGAGATGCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
3UTR-3UTR CCA 90 bp CTTCAGCAACGTCACACACACTTTCTCAGGCCTCCGTCCGTCACGTTCTGCCTTTCCCCAGTAAAAGGATaGAGTCCCTTCAGATTCCTT +
Preference number: 2 (lower is better)
Translates to: LQQRHTHFLRPPSVTFCLSPVKG*SPFRFL
Trigger: AAGGAATCTGAAGGGACTCCATCCTTTTACTGGGGA...AAGGCAGAACGTGACGGACGGAGGCCTGAGAAAGTGTGTGTGACGTTGCTGAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
3UTR-3UTR CCA 90 bp CTGGAGCTTATTGTGGGAACATTAGCCCTGTGGTGTGTAGATCATCAGGCACATAGGAGAGCCAGTTCTTaGGGACTCAAGGTGGGACAG +
Preference number: 2 (lower is better)
Translates to: LELIVGTLALWCVDHQAHRRASS*GLKVGQ
Trigger: CTGTCCCACCTTGAGTCCCCAAGAACTGGCTCTCCT...ATGTGCCTGATGATCTACACACCACAGGGCTAATGTTCCCACAATAAGCTCCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
3UTR-3UTR CCA 90 bp CACCTTTTCAAAGGAGAGCCAGTTCTTGGGGACTCAAGGTGGGACAGATGTTTCAATACCTCGATGATGTaGGCTCGCCTGACAGTACAG +
Preference number: 2 (lower is better)
Translates to: HLFKGEPVLGDSRWDRCFNTSMM*ARLTVQ
Trigger: CTGTACTGTCAGGCGAGCCCACATCATCGAGGTATT...GAAACATCTGTCCCACCTTGAGTCCCCAAGAACTGGCTCTCCTTTGAAAAGGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
3UTR-3UTR GCA 90 bp ACCGGGAAAGAACATGAGCAGTGTTGGTCAAGGCCTCATTCTGGAATCCTCTCAATTTGCATGAGGGAGTaGTTAGGACCAAGGGTGGAA +
Preference number: 2 (lower is better)
Translates to: TGKEHEQCWSRPHSGILSICMRE*LGPRVE
Trigger: TTCCACCCTTGGTCCTAAGCACTCCCTCATGCAAAT...TGAGAGGATTCCAGAATGAGGCCTTGACCAACACTGCTCATGTTCTTTCCCGGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
3UTR-3UTR GCA 90 bp AATGACTCAGAATTGAAGTGGGGGTGTGAGAAGGCTCTGTTCTCCCTTGTCCCAGTGTGTCTGGTTGCTTaGTGGAGCTTATTGTGGGAA +
Preference number: 2 (lower is better)
Translates to: NDSELKWGCEKALFSLVPVCLVA*WSLLWE
Trigger: TTCCCACAATAAGCTCCAGCAAGCAACCAGACACAC...TGGGACAAGGGAGAACAGAGCCTTCTCACACCCCCACTTCAATTCTGAGTCATT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
3UTR-3UTR GCA 90 bp ACCGGGAAAGAACATGAGCAGTGTTGGTCAAGGCCTCATTCTGGAATCCTCTCAGTGTGTCTGGTTGCTTaGTGGAGCTTATTGTGGGAA +
Preference number: 2 (lower is better)
Translates to: TGKEHEQCWSRPHSGILSVCLVA*WSLLWE
Trigger: TTCCCACAATAAGCTCCAGCAAGCAACCAGACACAC...TGAGAGGATTCCAGAATGAGGCCTTGACCAACACTGCTCATGTTCTTTCCCGGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
3UTR-3UTR GCA 90 bp ATCAATGACTCAGAATTGAAGTGGGGGTGTGAGAAGGCTCTGTTCTCCCTTGTCATTTGCATGAGGGAGTaGTTAGGACCAAGGGTGGAA +
Preference number: 2 (lower is better)
Translates to: INDSELKWGCEKALFSLVICMRE*LGPRVE
Trigger: TTCCACCCTTGGTCCTAAGCACTCCCTCATGCAAAT...GACAAGGGAGAACAGAGCCTTCTCACACCCCCACTTCAATTCTGAGTCATTGAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
3UTR-3UTR CCA 90 bp ACCGGGAAAGAACATGAGCAGTGTTGGTCAAGGCCTCATTCTGGAATCCTCTCATCCCCAGTAAAAGGATaGAGTCCCTTCAGATTCCTT +
Preference number: 2 (lower is better)
Translates to: TGKEHEQCWSRPHSGILSSPVKG*SPFRFL
Trigger: AAGGAATCTGAAGGGACTCCATCCTTTTACTGGGGA...TGAGAGGATTCCAGAATGAGGCCTTGACCAACACTGCTCATGTTCTTTCCCGGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
3UTR CAA 90 bp TCTAATGGATTGGGAAAGTTGAAAGGCGTTGGCCAAAAAGAGAAGTaGCAGGGAGGTGACATCATAAATGAGAGTACATTAAACGTCCCT +
Preference number: 2 (lower is better)
Translates to: SNGLGKLKGVGQKEK*QGGDIINESTLNVP
Trigger: AGGGACGTTTAATGTACTCTCATTTATGATGTCACCTCCCTGCAACTTCTCTTTTTGGCCAACGCCTTTCAACTTTCCCAATCCATTAGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
3UTR GCA 72 bp ACGAGGCCTCAAAGGTGCTCGCTGATTTGGGTGGATTaGCACGGACCTCCCACCGGAGGGCCCATCCGTGAC +
Preference number: 3 (lower is better)
Translates to: TRPQRCSLIWVD*HGPPTGGPIRD
Trigger: GTCACGGATGGGCCCTCCGGTGGGAGGTCCGTGGCAATCCACCCAAATCAGCGAGCACCTTTGAGGCCTCGT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
3UTR CCA 72 bp GAATTCTTTACGAGGCCTCAAAGGTGCTCGCTGATTTaGGTGGATTGCCACGGACCTCCCACCGGAGGGCCC +
Preference number: 3 (lower is better)
Translates to: EFFTRPQRCSLI*VDCHGPPTGGP
Trigger: GGGCCCTCCGGTGGGAGGTCCGTGGCAATCCACCCAAATCAGCGAGCACCTTTGAGGCCTCGTAAAGAATTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
3UTR GCA 72 bp CTCGCATGCAACCTCTTCCAGAAGCCTCCTTGGGTCTaGACCAGCTGCACACGCCTTCAGCAACGTCACACA +
Preference number: 3 (lower is better)
Translates to: LACNLFQKPPWV*TSCTRLQQRHT
Trigger: TGTGTGACGTTGCTGAAGGCGTGTGCAGCTGGTGCAGACCCAAGGAGGCTTCTGGAAGAGGTTGCATGCGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
3UTR CCA 72 bp TTTCTGCTCGCATGCAACCTCTTCCAGAAGCCTCCTTaGGTCTGCACCAGCTGCACACGCCTTCAGCAACGT +
Preference number: 3 (lower is better)
Translates to: FLLACNLFQKPP*VCTSCTRLQQR
Trigger: ACGTTGCTGAAGGCGTGTGCAGCTGGTGCAGACCCAAGGAGGCTTCTGGAAGAGGTTGCATGCGAGCAGAAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
3UTR TCA 72 bp CTTTGGGGTGTGGCCTATTCTCCCTGCACAGGGTGGTaGGTGTGTCTGGTTGCTTGCTGGAGCTTATTGTGG +
Preference number: 3 (lower is better)
Translates to: LWGVAYSPCTGW*VCLVACWSLLW
Trigger: CCACAATAAGCTCCAGCAAGCAACCAGACACACTCACCACCCTGTGCAGGGAGAATAGGCCACACCCCAAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
3UTR CCA 72 bp GACCAGTGGCCTAGGCCAAGATTTTTCTTTGGGGTGTaGCCTATTCTCCCTGCACAGGGTGGTGAGTGTGTC +
Preference number: 3 (lower is better)
Translates to: DQWPRPRFFFGV*PILPAQGGECV
Trigger: GACACACTCACCACCCTGTGCAGGGAGAATAGGCCACACCCCAAAGAAAAATCTTGGCCTAGGCCACTGGTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
3UTR CCA 72 bp GTCCCTGAGGCCACCGGGAAAGAACATGAGCAGTGTTaGTCAAGGCCTCATTCTGGAATCCTCTCAACAGTC +
Preference number: 3 (lower is better)
Translates to: VPEATGKEHEQC*SRPHSGILSTV
Trigger: GACTGTTGAGAGGATTCCAGAATGAGGCCTTGACCAACACTGCTCATGTTCTTTCCCGGTGGCCTCAGGGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
3UTR-3UTR CAA 90 bp ATTAAACGTCCCTTGCAGTCCCTCCGCCCCGTCACCCTTCCAATGTGCAGATTCGGCCAAGATTTTTCTTaGGGGTGTGGCCTATTCTCC +
Preference number: 3 (lower is better)
Translates to: IKRPLQSLRPVTLPMCRFGQDFS*GCGLFS
Trigger: GGAGAATAGGCCACACCCCAAAGAAAAATCTTGGCC...GAATCTGCACATTGGAAGGGTGACGGGGCGGAGGGACTGCAAGGGACGTTTAAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
3UTR CCA 72 bp TGGCCTATTCTCCCTGCACAGGGTGGTGAGTGTGTCTaGTTGCTTGCTGGAGCTTATTGTGGGAACATTAGC +
Preference number: 3 (lower is better)
Translates to: WPILPAQGGECV*LLAGAYCGNIS
Trigger: GCTAATGTTCCCACAATAAGCTCCAGCAAGCAACCAGACACACTCACCACCCTGTGCAGGGAGAATAGGCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
3UTR-3UTR CAA 90 bp GACTCAGAATTGAAGTGGGGGTGTGAGAAGGCTCTGTTCTCCCTTGTCCCAGAAGGCCAAGATTTTTCTTaGGGGTGTGGCCTATTCTCC +
Preference number: 3 (lower is better)
Translates to: DSELKWGCEKALFSLVPEGQDFS*GCGLFS
Trigger: GGAGAATAGGCCACACCCCAAAGAAAAATCTTGGCC...TTCTGGGACAAGGGAGAACAGAGCCTTCTCACACCCCCACTTCAATTCTGAGTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
3UTR TCA 72 bp AGCATTCAGCAGGTGCTCAGGAACGGTTTGCTTTGCTaGCGTCATTTCTACACTCGCCACGTCACATCACCA +
Preference number: 3 (lower is better)
Translates to: SIQQVLRNGLLC*RHFYTRHVTSP
Trigger: TGGTGATGTGACGTGGCGAGTGTAGAAATGACGTCAGCAAAGCAAACCGTTCCTGAGCACCTGCTGAATGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
3UTR GCA 72 bp CACACACACTTTCTCAGGCCTCCGTCCGTCACGTTCTaGCTTGCATCCGTTACGTTACGTTACGTTACGTTA +
Preference number: 3 (lower is better)
Translates to: HTHFLRPPSVTF*LASVTLRYVTL
Trigger: TAACGTAACGTAACGTAACGTAACGGATGCAAGGCAGAACGTGACGGACGGAGGCCTGAGAAAGTGTGTGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
3UTR GCA 72 bp GGTGACATCATAAATGAGAGTACATTAAACGTCCCTTaGAGTCCCTCCGCCCCGTCACCCTTCCAATGTGCA +
Preference number: 3 (lower is better)
Translates to: GDIINESTLNVP*SPSAPSPFQCA
Trigger: TGCACATTGGAAGGGTGACGGGGCGGAGGGACTGCAAGGGACGTTTAATGTACTCTCATTTATGATGTCACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
3UTR TCA 72 bp CTCCGCCCCGTCACCCTTCCAATGTGCAGATTCTTCTaGTCCTTTTTGATTTCTGCTCGCATGCAACCTCTT +
Preference number: 3 (lower is better)
Translates to: LRPVTLPMCRFF*SFLISARMQPL
Trigger: AAGAGGTTGCATGCGAGCAGAAATCAAAAAGGATCAGAAGAATCTGCACATTGGAAGGGTGACGGGGCGGAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
3UTR GCA 72 bp ACACTTTCTCAGGCCTCCGTCCGTCACGTTCTGCCTTaGATCCGTTACGTTACGTTACGTTACGTTACGTTA +
Preference number: 3 (lower is better)
Translates to: TLSQASVRHVLP*IRYVTLRYVTL
Trigger: TAACGTAACGTAACGTAACGTAACGTAACGGATGCAAGGCAGAACGTGACGGACGGAGGCCTGAGAAAGTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
3UTR CCA 72 bp GAACAGCTACCACTGATCAATGACTCAGAATTGAAGTaGGGGTGTGAGAAGGCTCTGTTCTCCCTTGTCCCA +
Preference number: 3 (lower is better)
Translates to: EQLPLINDSELK*GCEKALFSLVP
Trigger: TGGGACAAGGGAGAACAGAGCCTTCTCACACCCCCACTTCAATTCTGAGTCATTGATCAGTGGTAGCTGTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
3UTR CCA 72 bp CTCCTCCAGGCACCTTTTCAAAGGAGAGCCAGTTCTTaGGGACTCAAGGTGGGACAGATGTTTCAGTATAAA +
Preference number: 3 (lower is better)
Translates to: LLQAPFQRRASS*GLKVGQMFQYK
Trigger: TTTATACTGAAACATCTGTCCCACCTTGAGTCCCCAAGAACTGGCTCTCCTTTGAAAAGGTGCCTGGAGGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
3UTR TCA 72 bp AGAGGGAAGGGAAGTGCCTTTTTCCGTTTCCTACCATaGATTCTAGATTTGCATGAGGGAGTGCTTAGGACC +
Preference number: 3 (lower is better)
Translates to: RGKGSAFFRFLP*ILDLHEGVLRT
Trigger: GGTCCTAAGCACTCCCTCATGCAAATCTAGAATTCATGGTAGGAAACGGAAAAAGGCACTTCCCTTCCCTCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
3UTR GCA 72 bp TCCAATGTGCAGATTCTTCTGATCCTTTTTGATTTCTaGTCGCATGCAACCTCTTCCAGAAGCCTCCTTGGG +
Preference number: 3 (lower is better)
Translates to: SNVQILLILFDF*SHATSSRSLLG
Trigger: CCCAAGGAGGCTTCTGGAAGAGGTTGCATGCGAGCAGAAATCAAAAAGGATCAGAAGAATCTGCACATTGGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
3UTR CCA 72 bp AAGAGAAGTAAGGAGCATAAAAATACCTCGATGATGTaGGCTCGCCTGACAGTACAGAAAAGCAAGTCTCAC +
Preference number: 3 (lower is better)
Translates to: KRSKEHKNTSMM*ARLTVQKSKSH
Trigger: GTGAGACTTGCTTTTCTGTACTGTCAGGCGAGCCCACATCATCGAGGTATTTTTATGCTCCTTACTTCTCTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR CCA 90 bp GGCCGGCGTCAGCCCTGGAGACTGGGGGAAGGTCCTGAAGCAGGGAGTAGAGGCGCTGGTGGAGCTCCGTaGAGGGGTCCAAGGATCCGC +
Preference number: 4 (lower is better)
Translates to: GRRQPWRLGEGPEAGSRGAGGAP*RGPRIR
Trigger: GCGGATCCTTGGACCCCTCCACGGAGCTCCACCAGC...GCCTCTACTCCCTGCTTCAGGACCTTCCCCCAGTCTCCAGGGCTGACGCCGGCC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR CCA 90 bp GGCCGGCGTCAGCCCTGGAGACTGGGGGAAGGTCCTGAAGCAGGGAGTAGAGGCTGGCTCGGGGCACTTTaGGGGACCCATGGTAGGTCC +
Preference number: 4 (lower is better)
Translates to: GRRQPWRLGEGPEAGSRGWLGAL*GTHGRS
Trigger: GGACCTACCATGGGTCCCCCAAAGTGCCCCGAGCCA...GCCTCTACTCCCTGCTTCAGGACCTTCCCCCAGTCTCCAGGGCTGACGCCGGCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR GCA 90 bp GGCCGGCGTCAGCCCTGGAGACTGGGGGAAGGTCCTGAAGCAGGGAGTAGAGGCCTTCTCTGCCCTGGCTaGCTGCTTGCAGATTGGGTG +
Preference number: 4 (lower is better)
Translates to: GRRQPWRLGEGPEAGSRGLLCPG*LLADWV
Trigger: CACCCAATCTGCAAGCAGGCAGCCAGGGCAGAGAAG...GCCTCTACTCCCTGCTTCAGGACCTTCCCCCAGTCTCCAGGGCTGACGCCGGCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR TCA 90 bp GGCCGGCGTCAGCCCTGGAGACTGGGGGAAGGTCCTGAAGCAGGGAGTAGAGGCCCAAGACCCTGCCACTaGTGTACCGGTCACAAGTCT +
Preference number: 4 (lower is better)
Translates to: GRRQPWRLGEGPEAGSRGPRPCH*CTGHKS
Trigger: AGACTTGTGACCGGTACATCAGTGGCAGGGTCTTGG...GCCTCTACTCCCTGCTTCAGGACCTTCCCCCAGTCTCCAGGGCTGACGCCGGCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR CCA 90 bp CGTCACACACACTTTCTCAGGCCTCCGTCCGTCACGTTCTGCCTTGCATCCGTTGGGCCTCCCGACTGCTaGTGGAGCTCCGTGGAGGGG +
Preference number: 4 (lower is better)
Translates to: RHTHFLRPPSVTFCLASVGPPDC*WSSVEG
Trigger: CCCCTCCACGGAGCTCCACCAGCAGTCGGGAGGCCC...AACGGATGCAAGGCAGAACGTGACGGACGGAGGCCTGAGAAAGTGTGTGTGACG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR CCA 90 bp CTTCAGCAACGTCACACACACTTTCTCAGGCCTCCGTCCGTCACGTTCTGCCTTGGGCCTCCCGACTGCTaGTGGAGCTCCGTGGAGGGG +
Preference number: 4 (lower is better)
Translates to: LQQRHTHFLRPPSVTFCLGPPDC*WSSVEG
Trigger: CCCCTCCACGGAGCTCCACCAGCAGTCGGGAGGCCC...AAGGCAGAACGTGACGGACGGAGGCCTGAGAAAGTGTGTGTGACGTTGCTGAAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR GCA 90 bp GCAGGGAGTAGAGGCTCCTCCAGGCACCTTTTCAAAGGAGAGCCAGTTCTTGGGCTGGAGGCCCGCCTCTaGCGGAGGTCCAGGTTCTCA +
Preference number: 4 (lower is better)
Translates to: AGSRGSSRHLFKGEPVLGLEARL*RRSRFS
Trigger: TGAGAACCTGGACCTCCGGCAGAGGCGGGCCTCCAG...CCCAAGAACTGGCTCTCCTTTGAAAAGGTGCCTGGAGGAGCCTCTACTCCCTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR GCA 90 bp ACGTCACACACACTTTCTCAGGCCTCCGTCCGTCACGTTCTGCCTTGCATCCGTCTGGAGGCCCGCCTCTaGCGGAGGTCCAGGTTCTCA +
Preference number: 4 (lower is better)
Translates to: TSHTLSQASVRHVLPCIRLEARL*RRSRFS
Trigger: TGAGAACCTGGACCTCCGGCAGAGGCGGGCCTCCAG...ACGGATGCAAGGCAGAACGTGACGGACGGAGGCCTGAGAAAGTGTGTGTGACGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR CCA 90 bp GGCCGGCGTCAGCCCTGGAGACTGGGGGAAGGTCCTGAAGCAGGGAGTAGAGGCATGACGCTACAGGTCTaGCATTTGAAACAGCTGACG +
Preference number: 4 (lower is better)
Translates to: GRRQPWRLGEGPEAGSRGMTLQV*HLKQLT
Trigger: CGTCAGCTGTTTCAAATGCCAGACCTGTAGCGTCAT...GCCTCTACTCCCTGCTTCAGGACCTTCCCCCAGTCTCCAGGGCTGACGCCGGCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR CCA 90 bp ATTAAACGTCCCTTGCAGTCCCTCCGCCCCGTCACCCTTCCAATGTGCAGATTCGCTGGTGGAGCTCCGTaGAGGGGTCCAAGGATCCGC +
Preference number: 4 (lower is better)
Translates to: IKRPLQSLRPVTLPMCRFAGGAP*RGPRIR
Trigger: GCGGATCCTTGGACCCCTCCACGGAGCTCCACCAGC...GAATCTGCACATTGGAAGGGTGACGGGGCGGAGGGACTGCAAGGGACGTTTAAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR TCA 90 bp ACGTCACACACACTTTCTCAGGCCTCCGTCCGTCACGTTCTGCCTTGCATCCGTGAGGCTCGTAGGAAATaGGGTCGGGGCGTTGCACCT +
Preference number: 4 (lower is better)
Translates to: TSHTLSQASVRHVLPCIREARRK*GRGVAP
Trigger: AGGTGCAACGCCCCGACCTCATTTCCTACGAGCCTC...ACGGATGCAAGGCAGAACGTGACGGACGGAGGCCTGAGAAAGTGTGTGTGACGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR GCA 90 bp GGCCGGCGTCAGCCCTGGAGACTGGGGGAAGGTCCTGAAGCAGGGAGTAGAGGCTCTGGAGCTTGTGCATaGTTCGGTCAAAATCCTCTT +
Preference number: 4 (lower is better)
Translates to: GRRQPWRLGEGPEAGSRGSGACA*FGQNPL
Trigger: AAGAGGATTTTGACCGAAGCATGCACAAGCTCCAGA...GCCTCTACTCCCTGCTTCAGGACCTTCCCCCAGTCTCCAGGGCTGACGCCGGCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR CCA 90 bp CTTCAGCAACGTCACACACACTTTCTCAGGCCTCCGTCCGTCACGTTCTGCCTTGCGAGCGGGAGAAGGTaGGAGACATGCCTTGCCGAC +
Preference number: 4 (lower is better)
Translates to: LQQRHTHFLRPPSVTFCLASGRR*ETCLAD
Trigger: GTCGGCAAGGCATGTCTCCCACCTTCTCCCGCTCGC...AAGGCAGAACGTGACGGACGGAGGCCTGAGAAAGTGTGTGTGACGTTGCTGAAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR TCA 90 bp CCTTGTCCCAGAAAGCACGAGAGTCAGTCCCTGAGGCCACCGGGAAAGAACATGTCTCCTCCCCCTCAGTaGACATCTGGTGGCAGCGTA +
Preference number: 4 (lower is better)
Translates to: PCPRKHESQSLRPPGKNMSPPPQ*TSGGSV
Trigger: TACGCTGCCACCAGATGTTCACTGAGGGGGAGGAGA...CATGTTCTTTCCCGGTGGCCTCAGGGACTGACTCTCGTGCTTTCTGGGACAAGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR TCA 90 bp CCTTGTCCCAGAAAGCACGAGAGTCAGTCCCTGAGGCCACCGGGAAAGAACATGTTCCTCTCCTCCAGATaGGAACCTTCTGGCTCGGGG +
Preference number: 4 (lower is better)
Translates to: PCPRKHESQSLRPPGKNMFLSSR*EPSGSG
Trigger: CCCCGAGCCAGAAGGTTCTCATCTGGAGGAGAGGAA...CATGTTCTTTCCCGGTGGCCTCAGGGACTGACTCTCGTGCTTTCTGGGACAAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR TCA 90 bp CGTCACACACACTTTCTCAGGCCTCCGTCCGTCACGTTCTGCCTTGCATCCGTTCTCGCATGCCCCAGTTaGCTGCGTTCATGCTGTCGT +
Preference number: 4 (lower is better)
Translates to: RHTHFLRPPSVTFCLASVLACPS*LRSCCR
Trigger: ACGACAGCATGAACGCAGTCAACTGGGGCATGCGAG...AACGGATGCAAGGCAGAACGTGACGGACGGAGGCCTGAGAAAGTGTGTGTGACG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR GCA 90 bp GCAGGGAGTAGAGGCTCCTCCAGGCACCTTTTCAAAGGAGAGCCAGTTCTTGGGCCCTGGCTGCCTGCTTaGAGATTGGGTGCCAAACCT +
Preference number: 4 (lower is better)
Translates to: AGSRGSSRHLFKGEPVLGPWLPA*RLGAKP
Trigger: AGGTTTGGCACCCAATCTGCAAGCAGGCAGCCAGGG...CCCAAGAACTGGCTCTCCTTTGAAAAGGTGCCTGGAGGAGCCTCTACTCCCTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR GCA 90 bp CGTCACACACACTTTCTCAGGCCTCCGTCCGTCACGTTCTGCCTTGCATCCGTTCCCTGGCTGCCTGCTTaGAGATTGGGTGCCAAACCT +
Preference number: 4 (lower is better)
Translates to: RHTHFLRPPSVTFCLASVPWLPA*RLGAKP
Trigger: AGGTTTGGCACCCAATCTGCAAGCAGGCAGCCAGGG...AACGGATGCAAGGCAGAACGTGACGGACGGAGGCCTGAGAAAGTGTGTGTGACG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR GCA 90 bp TCTGCACCAGCTGCACACGCCTTCAGCAACGTCACACACACTTTCTCAGGCCTCTCTGCCCTGGCTGCCTaGTTGCAGATTGGGTGCCAA +
Preference number: 4 (lower is better)
Translates to: SAPAAHAFSNVTHTFSGLSALAA*LQIGCQ
Trigger: TTGGCACCCAATCTGCAAGCAGGCAGCCAGGGCAGA...GAGGCCTGAGAAAGTGTGTGTGACGTTGCTGAAGGCGTGTGCAGCTGGTGCAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR GCA 90 bp CGTCACACACACTTTCTCAGGCCTCCGTCCGTCACGTTCTGCCTTGCATCCGTTTCTGCCCTGGCTGCCTaGTTGCAGATTGGGTGCCAA +
Preference number: 4 (lower is better)
Translates to: RHTHFLRPPSVTFCLASVSALAA*LQIGCQ
Trigger: TTGGCACCCAATCTGCAAGCAGGCAGCCAGGGCAGA...AACGGATGCAAGGCAGAACGTGACGGACGGAGGCCTGAGAAAGTGTGTGTGACG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR CCA 90 bp CCTTGTCCCAGAAAGCACGAGAGTCAGTCCCTGAGGCCACCGGGAAAGAACATGCAGATGAGAACCTTCTaGCTCGGGGCACTTTGGGGG +
Preference number: 4 (lower is better)
Translates to: PCPRKHESQSLRPPGKNMQMRTF*LGALWG
Trigger: CCCCCAAAGTGCCCCGAGCCAGAAGGTTCTCATCTG...CATGTTCTTTCCCGGTGGCCTCAGGGACTGACTCTCGTGCTTTCTGGGACAAGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
3UTR CAA 72 bp AGAATTCTTTACGAGGCCTCAAAGGTGCTCGCTGATTaGGGTGGATTGCCACGGACCTCCCACCGGAGGGCC +
Preference number: 4 (lower is better)
Translates to: RILYEASKVLAD*GGLPRTSHRRA
Trigger: GGCCCTCCGGTGGGAGGTCCGTGGCAATCCACCCAAATCAGCGAGCACCTTTGAGGCCTCGTAAAGAATTCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR TCA 90 bp AATGACTCAGAATTGAAGTGGGGGTGTGAGAAGGCTCTGTTCTCCCTTGTCCCAAGCGGTAGCACTGGATaGCATTGGAGCCGCCCCGGG +
Preference number: 4 (lower is better)
Translates to: NDSELKWGCEKALFSLVPSGSTG*HWSRPG
Trigger: CCCGGGGCGGCTCCAATGTCATCCAGTGCTACCGCT...TGGGACAAGGGAGAACAGAGCCTTCTCACACCCCCACTTCAATTCTGAGTCATT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR TCA 90 bp GCAGGGAGTAGAGGCTCCTCCAGGCACCTTTTCAAAGGAGAGCCAGTTCTTGGGCCAAGACCCTGCCACTaGTGTACCGGTCACAAGTCT +
Preference number: 4 (lower is better)
Translates to: AGSRGSSRHLFKGEPVLGPRPCH*CTGHKS
Trigger: AGACTTGTGACCGGTACATCAGTGGCAGGGTCTTGG...CCCAAGAACTGGCTCTCCTTTGAAAAGGTGCCTGGAGGAGCCTCTACTCCCTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR TCA 90 bp ATTAAACGTCCCTTGCAGTCCCTCCGCCCCGTCACCCTTCCAATGTGCAGATTCATGTCCGCCTGTGCTTaGGCTTCTTCTCTGCCCTGG +
Preference number: 4 (lower is better)
Translates to: IKRPLQSLRPVTLPMCRFMSACA*ASSLPW
Trigger: CCAGGGCAGAGAAGAAGCTCAAGCACAGGCGGACAT...GAATCTGCACATTGGAAGGGTGACGGGGCGGAGGGACTGCAAGGGACGTTTAAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR TCA 90 bp TCTGCACCAGCTGCACACGCCTTCAGCAACGTCACACACACTTTCTCAGGCCTCCCTGTAGGCAGGCAGTaGGGCAGATTTGGAGATGAG +
Preference number: 4 (lower is better)
Translates to: SAPAAHAFSNVTHTFSGLPVGRQ*GRFGDE
Trigger: CTCATCTCCAAATCTGCCTCACTGCCTGCCTACAGG...GAGGCCTGAGAAAGTGTGTGTGACGTTGCTGAAGGCGTGTGCAGCTGGTGCAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR TCA 90 bp GTGGGCTCGCCTGACAGTACAGAAAAGCAAGTCTCACGGCAGGCAGCATGTTGTCTCGCATGCCCCAGTTaGCTGCGTTCATGCTGTCGT +
Preference number: 4 (lower is better)
Translates to: VGSPDSTEKQVSRQAACCLACPS*LRSCCR
Trigger: ACGACAGCATGAACGCAGTCAACTGGGGCATGCGAG...ACAACATGCTGCCTGCCGTGAGACTTGCTTTTCTGTACTGTCAGGCGAGCCCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR GCA 90 bp CCTTGTCCCAGAAAGCACGAGAGTCAGTCCCTGAGGCCACCGGGAAAGAACATGGTAGTGTTTCCCTCCTaGCTCCAAGACCCTGCCACT +
Preference number: 4 (lower is better)
Translates to: PCPRKHESQSLRPPGKNMVVFPS*LQDPAT
Trigger: AGTGGCAGGGTCTTGGAGGCAGGAGGGAAACACTAC...CATGTTCTTTCCCGGTGGCCTCAGGGACTGACTCTCGTGCTTTCTGGGACAAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR GCA 90 bp CCTTGTCCCAGAAAGCACGAGAGTCAGTCCCTGAGGCCACCGGGAAAGAACATGCTTGAGCTTCTTCTCTaGCCTGGCTGCCTGCTTGCA +
Preference number: 4 (lower is better)
Translates to: PCPRKHESQSLRPPGKNMLELLL*PGCLLA
Trigger: TGCAAGCAGGCAGCCAGGGCAGAGAAGAAGCTCAAG...CATGTTCTTTCCCGGTGGCCTCAGGGACTGACTCTCGTGCTTTCTGGGACAAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR CCA 90 bp ACGTCACACACACTTTCTCAGGCCTCCGTCCGTCACGTTCTGCCTTGCATCCGTAAGAAGAAGCCCGACTaGGCCAGGCCACATCCACAT +
Preference number: 4 (lower is better)
Translates to: TSHTLSQASVRHVLPCIRKKKPD*ARPHPH
Trigger: ATGTGGATGTGGCCTGGCCCAGTCGGGCTTCTTCTT...ACGGATGCAAGGCAGAACGTGACGGACGGAGGCCTGAGAAAGTGTGTGTGACGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR CCA 90 bp ACCGGGAAAGAACATGAGCAGTGTTGGTCAAGGCCTCATTCTGGAATCCTCTCACAATGTAGCCAGGGCTaGAGGCCCGCCTCTGCCGGA +
Preference number: 4 (lower is better)
Translates to: TGKEHEQCWSRPHSGILSQCSQG*RPASAG
Trigger: TCCGGCAGAGGCGGGCCTCCAGCCCTGGCTACATTG...TGAGAGGATTCCAGAATGAGGCCTTGACCAACACTGCTCATGTTCTTTCCCGGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR CCA 90 bp CGTCACACACACTTTCTCAGGCCTCCGTCCGTCACGTTCTGCCTTGCATCCGTTAGCCTGGTAAGAGGTTaGCGTGGAGGACCTCACATC +
Preference number: 4 (lower is better)
Translates to: RHTHFLRPPSVTFCLASVSLVRG*RGGPHI
Trigger: GATGTGAGGTCCTCCACGCCAACCTCTTACCAGGCT...AACGGATGCAAGGCAGAACGTGACGGACGGAGGCCTGAGAAAGTGTGTGTGACG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR CCA 90 bp GCTCGCCTGACAGTACAGAAAAGCAAGTCTCACGGCAGGCAGCATGTTGTGTCCACATCTCATAGCCAGTaGTGTGCAGGGCCTCCCGAC +
Preference number: 4 (lower is better)
Translates to: ARLTVQKSKSHGRQHVVSTSHSQ*CAGPPD
Trigger: GTCGGGAGGCCCTGCACACCACTGGCTATGAGATGT...GGACACAACATGCTGCCTGCCGTGAGACTTGCTTTTCTGTACTGTCAGGCGAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR CCA 90 bp CTTCAGCAACGTCACACACACTTTCTCAGGCCTCCGTCCGTCACGTTCTGCCTTACATCTCATAGCCAGTaGTGTGCAGGGCCTCCCGAC +
Preference number: 4 (lower is better)
Translates to: LQQRHTHFLRPPSVTFCLTSHSQ*CAGPPD
Trigger: GTCGGGAGGCCCTGCACACCACTGGCTATGAGATGT...AAGGCAGAACGTGACGGACGGAGGCCTGAGAAAGTGTGTGTGACGTTGCTGAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
3UTR CAA 72 bp CCTCTAGGGACCAGTGGCCTAGGCCAAGATTTTTCTTaGGGGTGTGGCCTATTCTCCCTGCACAGGGTGGTG +
Preference number: 4 (lower is better)
Translates to: PLGTSGLGQDFS*GCGLFSLHRVV
Trigger: CACCACCCTGTGCAGGGAGAATAGGCCACACCCCAAAGAAAAATCTTGGCCTAGGCCACTGGTCCCTAGAGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
3UTR CAA 72 bp ATTTCTGCTCGCATGCAACCTCTTCCAGAAGCCTCCTaGGGTCTGCACCAGCTGCACACGCCTTCAGCAACG +
Preference number: 4 (lower is better)
Translates to: ISARMQPLPEAS*GLHQLHTPSAT
Trigger: CGTTGCTGAAGGCGTGTGCAGCTGGTGCAGACCCAAGGAGGCTTCTGGAAGAGGTTGCATGCGAGCAGAAAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR TCA 90 bp ATTAAACGTCCCTTGCAGTCCCTCCGCCCCGTCACCCTTCCAATGTGCAGATTCCTTGCTGCTGGTCATTaGCTGGGAGCACGTCTGACA +
Preference number: 4 (lower is better)
Translates to: IKRPLQSLRPVTLPMCRFLAAGH*LGARLT
Trigger: TGTCAGACGTGCTCCCAGTCAATGACCAGCAGCAAG...GAATCTGCACATTGGAAGGGTGACGGGGCGGAGGGACTGCAAGGGACGTTTAAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR TCA 90 bp GTGGGCTCGCCTGACAGTACAGAAAAGCAAGTCTCACGGCAGGCAGCATGTTGTCTTGCTGCTGGTCATTaGCTGGGAGCACGTCTGACA +
Preference number: 4 (lower is better)
Translates to: VGSPDSTEKQVSRQAACCLAAGH*LGARLT
Trigger: TGTCAGACGTGCTCCCAGTCAATGACCAGCAGCAAG...ACAACATGCTGCCTGCCGTGAGACTTGCTTTTCTGTACTGTCAGGCGAGCCCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR TCA 90 bp GTGGGCTCGCCTGACAGTACAGAAAAGCAAGTCTCACGGCAGGCAGCATGTTGTGTCAGCCAGGTAGTGTaGACGAGGGGAGCCATTGAA +
Preference number: 4 (lower is better)
Translates to: VGSPDSTEKQVSRQAACCVSQVV*TRGAIE
Trigger: TTCAATGGCTCCCCTCGTTCACACTACCTGGCTGAC...ACAACATGCTGCCTGCCGTGAGACTTGCTTTTCTGTACTGTCAGGCGAGCCCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR TCA 90 bp GCAGGGAGTAGAGGCTCCTCCAGGCACCTTTTCAAAGGAGAGCCAGTTCTTGGGAGGCAGATTTGGAGATaGGGGGATCACTGTCAGCCA +
Preference number: 4 (lower is better)
Translates to: AGSRGSSRHLFKGEPVLGRQIWR*GDHCQP
Trigger: TGGCTGACAGTGATCCCCTCATCTCCAAATCTGCCT...CCCAAGAACTGGCTCTCCTTTGAAAAGGTGCCTGGAGGAGCCTCTACTCCCTGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR GCA 90 bp GCTCGCCTGACAGTACAGAAAAGCAAGTCTCACGGCAGGCAGCATGTTGTGTCCCTTGAGCTTCTTCTCTaGCCTGGCTGCCTGCTTGCA +
Preference number: 4 (lower is better)
Translates to: ARLTVQKSKSHGRQHVVSLELLL*PGCLLA
Trigger: TGCAAGCAGGCAGCCAGGGCAGAGAAGAAGCTCAAG...GGACACAACATGCTGCCTGCCGTGAGACTTGCTTTTCTGTACTGTCAGGCGAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR CCA 90 bp ATTAAACGTCCCTTGCAGTCCCTCCGCCCCGTCACCCTTCCAATGTGCAGATTCTGGAAGTGGTTGTTGTaGACACGGACCACCTCCCCT +
Preference number: 4 (lower is better)
Translates to: IKRPLQSLRPVTLPMCRFWKWLL*TRTTSP
Trigger: AGGGGAGGTGGTCCGTGTCCACAACAACCACTTCCA...GAATCTGCACATTGGAAGGGTGACGGGGCGGAGGGACTGCAAGGGACGTTTAAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR CCA 90 bp ACGTCACACACACTTTCTCAGGCCTCCGTCCGTCACGTTCTGCCTTGCATCCGTCATCGGATGTGGAAGTaGTTGTTGTGGACACGGACC +
Preference number: 4 (lower is better)
Translates to: TSHTLSQASVRHVLPCIRHRMWK*LLWTRT
Trigger: GGTCCGTGTCCACAACAACCACTTCCACATCCGATG...ACGGATGCAAGGCAGAACGTGACGGACGGAGGCCTGAGAAAGTGTGTGTGACGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR CCA 90 bp GTGGGCTCGCCTGACAGTACAGAAAAGCAAGTCTCACGGCAGGCAGCATGTTGTAAGAAGAAGCCCGACTaGGCCAGGCCACATCCACAT +
Preference number: 4 (lower is better)
Translates to: VGSPDSTEKQVSRQAACCKKKPD*ARPHPH
Trigger: ATGTGGATGTGGCCTGGCCCAGTCGGGCTTCTTCTT...ACAACATGCTGCCTGCCGTGAGACTTGCTTTTCTGTACTGTCAGGCGAGCCCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR CCA 90 bp AATGACTCAGAATTGAAGTGGGGGTGTGAGAAGGCTCTGTTCTCCCTTGTCCCAGCGAGCGGGAGAAGGTaGGAGACATGCCTTGCCGAC +
Preference number: 4 (lower is better)
Translates to: NDSELKWGCEKALFSLVPASGRR*ETCLAD
Trigger: GTCGGCAAGGCATGTCTCCCACCTTCTCCCGCTCGC...TGGGACAAGGGAGAACAGAGCCTTCTCACACCCCCACTTCAATTCTGAGTCATT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR CCA 90 bp ACGTCACACACACTTTCTCAGGCCTCCGTCCGTCACGTTCTGCCTTGCATCCGTAGCATAGTAGGGGTCTaGCGAGTAGGCTGGGCTATA +
Preference number: 4 (lower is better)
Translates to: TSHTLSQASVRHVLPCIRSIVGV*RVGWAI
Trigger: TATAGCCCAGCCTACTCGCCAGACCCCTACTATGCT...ACGGATGCAAGGCAGAACGTGACGGACGGAGGCCTGAGAAAGTGTGTGTGACGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR CCA 90 bp AATGACTCAGAATTGAAGTGGGGGTGTGAGAAGGCTCTGTTCTCCCTTGTCCCATGGCTCGGGGCACTTTaGGGGACCCATGGTAGGTCC +
Preference number: 4 (lower is better)
Translates to: NDSELKWGCEKALFSLVPWLGAL*GTHGRS
Trigger: GGACCTACCATGGGTCCCCCAAAGTGCCCCGAGCCA...TGGGACAAGGGAGAACAGAGCCTTCTCACACCCCCACTTCAATTCTGAGTCATT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR TCA 90 bp ATTAAACGTCCCTTGCAGTCCCTCCGCCCCGTCACCCTTCCAATGTGCAGATTCTGTACTCCTGGTTCTTaGAGAAGAAGCCCGACTGGG +
Preference number: 4 (lower is better)
Translates to: IKRPLQSLRPVTLPMCRFCTPGS*RRSPTG
Trigger: CCCAGTCGGGCTTCTTCTTCAAGAACCAGGAGTACA...GAATCTGCACATTGGAAGGGTGACGGGGCGGAGGGACTGCAAGGGACGTTTAAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR TCA 90 bp CGTCACACACACTTTCTCAGGCCTCCGTCCGTCACGTTCTGCCTTGCATCCGTTGTCCAGTGCCAGAAGTaGCTGGCCATGTTTAATCTC +
Preference number: 4 (lower is better)
Translates to: RHTHFLRPPSVTFCLASVVQCQK*LAMFNL
Trigger: GAGATTAAACATGGCCAGTCACTTCTGGCACTGGAC...AACGGATGCAAGGCAGAACGTGACGGACGGAGGCCTGAGAAAGTGTGTGTGACG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR TCA 90 bp AATGACTCAGAATTGAAGTGGGGGTGTGAGAAGGCTCTGTTCTCCCTTGTCCCAGAGGCTCGTAGGAAATaGGGTCGGGGCGTTGCACCT +
Preference number: 4 (lower is better)
Translates to: NDSELKWGCEKALFSLVPEARRK*GRGVAP
Trigger: AGGTGCAACGCCCCGACCTCATTTCCTACGAGCCTC...TGGGACAAGGGAGAACAGAGCCTTCTCACACCCCCACTTCAATTCTGAGTCATT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR TCA 90 bp ACGTCACACACACTTTCTCAGGCCTCCGTCCGTCACGTTCTGCCTTGCATCCGTCCAATACTCAGACTCTaGAGCATAGTAGGGGTCTGG +
Preference number: 4 (lower is better)
Translates to: TSHTLSQASVRHVLPCIRPILRL*SIVGVW
Trigger: CCAGACCCCTACTATGCTTCAGAGTCTGAGTATTGG...ACGGATGCAAGGCAGAACGTGACGGACGGAGGCCTGAGAAAGTGTGTGTGACGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR GCA 90 bp CCTTGTCCCAGAAAGCACGAGAGTCAGTCCCTGAGGCCACCGGGAAAGAACATGGTTGGTAGTCCTGGGTaGAGATGTACTCCTGGTTCT +
Preference number: 4 (lower is better)
Translates to: PCPRKHESQSLRPPGKNMVGSPG*RCTPGS
Trigger: AGAACCAGGAGTACATCTGCACCCAGGACTACCAAC...CATGTTCTTTCCCGGTGGCCTCAGGGACTGACTCTCGTGCTTTCTGGGACAAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR GCA 90 bp ATTAAACGTCCCTTGCAGTCCCTCCGCCCCGTCACCCTTCCAATGTGCAGATTCCATGCCCCAGTTGACTaGGTTCATGCTGTCGTAGTG +
Preference number: 4 (lower is better)
Translates to: IKRPLQSLRPVTLPMCRFHAPVD*VHAVVV
Trigger: CACTACGACAGCATGAACGCAGTCAACTGGGGCATG...GAATCTGCACATTGGAAGGGTGACGGGGCGGAGGGACTGCAAGGGACGTTTAAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR CCA 90 bp TCTGCACCAGCTGCACACGCCTTCAGCAACGTCACACACACTTTCTCAGGCCTCTCAGTGAACATCTGGTaGCAGCGTACACATCTGGCA +
Preference number: 4 (lower is better)
Translates to: SAPAAHAFSNVTHTFSGLSVNIW*QRTHLA
Trigger: TGCCAGATGTGTACGCTGCCACCAGATGTTCACTGA...GAGGCCTGAGAAAGTGTGTGTGACGTTGCTGAAGGCGTGTGCAGCTGGTGCAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR CCA 90 bp ACGTCACACACACTTTCTCAGGCCTCCGTCCGTCACGTTCTGCCTTGCATCCGTGGATGTGAAAGTGCTTaGGAGCCTGGTAAGAGGTTG +
Preference number: 4 (lower is better)
Translates to: TSHTLSQASVRHVLPCIRGCESA*EPGKRL
Trigger: CAACCTCTTACCAGGCTCCCAAGCACTTTCACATCC...ACGGATGCAAGGCAGAACGTGACGGACGGAGGCCTGAGAAAGTGTGTGTGACGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR CCA 90 bp CGTCACACACACTTTCTCAGGCCTCCGTCCGTCACGTTCTGCCTTGCATCCGTTGGATGTGAAAGTGCTTaGGAGCCTGGTAAGAGGTTG +
Preference number: 4 (lower is better)
Translates to: RHTHFLRPPSVTFCLASVGCESA*EPGKRL
Trigger: CAACCTCTTACCAGGCTCCCAAGCACTTTCACATCC...AACGGATGCAAGGCAGAACGTGACGGACGGAGGCCTGAGAAAGTGTGTGTGACG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR CCA 90 bp ACGTCACACACACTTTCTCAGGCCTCCGTCCGTCACGTTCTGCCTTGCATCCGTGGTTCCTTCCTCTTGTaGTCACCAGTAGCAGCTCAT +
Preference number: 4 (lower is better)
Translates to: TSHTLSQASVRHVLPCIRGSFLL*SPVAAH
Trigger: ATGAGCTGCTACTGGTGACCACAAGAGGAAGGAACC...ACGGATGCAAGGCAGAACGTGACGGACGGAGGCCTGAGAAAGTGTGTGTGACGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
3UTR CAA 72 bp TTCTCCCTGCACAGGGTGGTGAGTGTGTCTGGTTGCTaGCTGGAGCTTATTGTGGGAACATTAGCCCTGTGG +
Preference number: 4 (lower is better)
Translates to: FSLHRVVSVSGC*LELIVGTLALW
Trigger: CCACAGGGCTAATGTTCCCACAATAAGCTCCAGCAAGCAACCAGACACACTCACCACCCTGTGCAGGGAGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR TCA 90 bp TTGCGGGTGGTAGAGGGAAGGGAAGTGCCTTTTTCCGTTTCCTACCATGAATTCTCTCCTCCCCCTCAGTaGACATCTGGTGGCAGCGTA +
Preference number: 4 (lower is better)
Translates to: LRVVEGREVPFSVSYHEFSPPPQ*TSGGSV
Trigger: TACGCTGCCACCAGATGTTCACTGAGGGGGAGGAGA...GAATTCATGGTAGGAAACGGAAAAAGGCACTTCCCTTCCCTCTACCACCCGCAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR TCA 90 bp AATGACTCAGAATTGAAGTGGGGGTGTGAGAAGGCTCTGTTCTCCCTTGTCCCAATGTCCGCCTGTGCTTaGGCTTCTTCTCTGCCCTGG +
Preference number: 4 (lower is better)
Translates to: NDSELKWGCEKALFSLVPMSACA*ASSLPW
Trigger: CCAGGGCAGAGAAGAAGCTCAAGCACAGGCGGACAT...TGGGACAAGGGAGAACAGAGCCTTCTCACACCCCCACTTCAATTCTGAGTCATT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR TCA 90 bp AATGACTCAGAATTGAAGTGGGGGTGTGAGAAGGCTCTGTTCTCCCTTGTCCCATTCCTCTCCTCCAGATaGGAACCTTCTGGCTCGGGG +
Preference number: 4 (lower is better)
Translates to: NDSELKWGCEKALFSLVPFLSSR*EPSGSG
Trigger: CCCCGAGCCAGAAGGTTCTCATCTGGAGGAGAGGAA...TGGGACAAGGGAGAACAGAGCCTTCTCACACCCCCACTTCAATTCTGAGTCATT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR GCA 90 bp CTTCAGCAACGTCACACACACTTTCTCAGGCCTCCGTCCGTCACGTTCTGCCTTGTTGGTAGTCCTGGGTaGAGATGTACTCCTGGTTCT +
Preference number: 4 (lower is better)
Translates to: LQQRHTHFLRPPSVTFCLVGSPG*RCTPGS
Trigger: AGAACCAGGAGTACATCTGCACCCAGGACTACCAAC...AAGGCAGAACGTGACGGACGGAGGCCTGAGAAAGTGTGTGTGACGTTGCTGAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR CCA 90 bp ACGTCACACACACTTTCTCAGGCCTCCGTCCGTCACGTTCTGCCTTGCATCCGTGTGCAGATGTACTCCTaGTTCTTGAAGAAGAAGCCC +
Preference number: 4 (lower is better)
Translates to: TSHTLSQASVRHVLPCIRVQMYS*FLKKKP
Trigger: GGGCTTCTTCTTCAAGAACCAGGAGTACATCTGCAC...ACGGATGCAAGGCAGAACGTGACGGACGGAGGCCTGAGAAAGTGTGTGTGACGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR CCA 90 bp CTTCAGCAACGTCACACACACTTTCTCAGGCCTCCGTCCGTCACGTTCTGCCTTCGTCGGAGGTGTATCTaGAATGAGGCTCGTAGGAAA +
Preference number: 4 (lower is better)
Translates to: LQQRHTHFLRPPSVTFCLRRRCI*NEARRK
Trigger: TTTCCTACGAGCCTCATTCCAGATACACCTCCGACG...AAGGCAGAACGTGACGGACGGAGGCCTGAGAAAGTGTGTGTGACGTTGCTGAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR CCA 90 bp CTTCAGCAACGTCACACACACTTTCTCAGGCCTCCGTCCGTCACGTTCTGCCTTACATCTAATTGGCTATaGTATGGGGAGCTCCGGCCA +
Preference number: 4 (lower is better)
Translates to: LQQRHTHFLRPPSVTFCLTSNWL*YGELRP
Trigger: TGGCCGGAGCTCCCCATACCATAGCCAATTAGATGT...AAGGCAGAACGTGACGGACGGAGGCCTGAGAAAGTGTGTGTGACGTTGCTGAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR CCA 90 bp CGTCACACACACTTTCTCAGGCCTCCGTCCGTCACGTTCTGCCTTGCATCCGTTGACCTCACATCTAATTaGCTATGGTATGGGGAGCTC +
Preference number: 4 (lower is better)
Translates to: RHTHFLRPPSVTFCLASVDLTSN*LWYGEL
Trigger: GAGCTCCCCATACCATAGCCAATTAGATGTGAGGTC...AACGGATGCAAGGCAGAACGTGACGGACGGAGGCCTGAGAAAGTGTGTGTGACG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR CCA 90 bp GTGGGCTCGCCTGACAGTACAGAAAAGCAAGTCTCACGGCAGGCAGCATGTTGTGTTACTCTCTCCAGCTaGGATGTGAAAGTGCTTGGG +
Preference number: 4 (lower is better)
Translates to: VGSPDSTEKQVSRQAACCVTLSS*DVKVLG
Trigger: CCCAAGCACTTTCACATCCCAGCTGGAGAGAGTAAC...ACAACATGCTGCCTGCCGTGAGACTTGCTTTTCTGTACTGTCAGGCGAGCCCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR CCA 90 bp CCTTGTCCCAGAAAGCACGAGAGTCAGTCCCTGAGGCCACCGGGAAAGAACATGTGCTCTTGGTTGCTGTaGACAAATCACCATGCCGTT +
Preference number: 4 (lower is better)
Translates to: PCPRKHESQSLRPPGKNMCSWLL*TNHHAV
Trigger: AACGGCATGGTGATTTGTCCACAGCAACCAAGAGCA...CATGTTCTTTCCCGGTGGCCTCAGGGACTGACTCTCGTGCTTTCTGGGACAAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
3UTR CAA 72 bp CCTATTCTCCCTGCACAGGGTGGTGAGTGTGTCTGGTaGCTTGCTGGAGCTTATTGTGGGAACATTAGCCCT +
Preference number: 4 (lower is better)
Translates to: PILPAQGGECVW*LAGAYCGNISP
Trigger: AGGGCTAATGTTCCCACAATAAGCTCCAGCAAGCAACCAGACACACTCACCACCCTGTGCAGGGAGAATAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
3UTR CAA 72 bp GCTCAGCATTCAGCAGGTGCTCAGGAACGGTTTGCTTaGCTGACGTCATTTCTACACTCGCCACGTCACATC +
Preference number: 4 (lower is better)
Translates to: AQHSAGAQERFA*LTSFLHSPRHI
Trigger: GATGTGACGTGGCGAGTGTAGAAATGACGTCAGCAAAGCAAACCGTTCCTGAGCACCTGCTGAATGCTGAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR TCA 90 bp GCTCGCCTGACAGTACAGAAAAGCAAGTCTCACGGCAGGCAGCATGTTGTGTCCCACAAGTCTCACATTTaGTGCCAAACTGGGAGTGGT +
Preference number: 4 (lower is better)
Translates to: ARLTVQKSKSHGRQHVVSHKSHI*CQTGSG
Trigger: ACCACTCCCAGTTTGGCATCAAATGTGAGACTTGTG...GGACACAACATGCTGCCTGCCGTGAGACTTGCTTTTCTGTACTGTCAGGCGAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR TCA 90 bp CACCTTTTCAAAGGAGAGCCAGTTCTTGGGGACTCAAGGTGGGACAGATGTTTCATCCGCATAGGAGCTTaGCCGCGCCTTCATCTCTTC +
Preference number: 4 (lower is better)
Translates to: HLFKGEPVLGDSRWDRCFIRIGA*PRLHLF
Trigger: GAAGAGATGAAGGCGCGGTCAAGCTCCTATGCGGAT...GAAACATCTGTCCCACCTTGAGTCCCCAAGAACTGGCTCTCCTTTGAAAAGGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR TCA 90 bp TTGCGGGTGGTAGAGGGAAGGGAAGTGCCTTTTTCCGTTTCCTACCATGAATTCGTCAGCCAGGTAGTGTaGACGAGGGGAGCCATTGAA +
Preference number: 4 (lower is better)
Translates to: LRVVEGREVPFSVSYHEFVSQVV*TRGAIE
Trigger: TTCAATGGCTCCCCTCGTTCACACTACCTGGCTGAC...GAATTCATGGTAGGAAACGGAAAAAGGCACTTCCCTTCCCTCTACCACCCGCAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR TCA 90 bp ACCGGGAAAGAACATGAGCAGTGTTGGTCAAGGCCTCATTCTGGAATCCTCTCACCTGTAGGCAGGCAGTaGGGCAGATTTGGAGATGAG +
Preference number: 4 (lower is better)
Translates to: TGKEHEQCWSRPHSGILSPVGRQ*GRFGDE
Trigger: CTCATCTCCAAATCTGCCTCACTGCCTGCCTACAGG...TGAGAGGATTCCAGAATGAGGCCTTGACCAACACTGCTCATGTTCTTTCCCGGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR GCA 90 bp ATTAAACGTCCCTTGCAGTCCCTCCGCCCCGTCACCCTTCCAATGTGCAGATTCAGCTATCACAGCGGGTaGCATAAAGCTGTTGGTAGT +
Preference number: 4 (lower is better)
Translates to: IKRPLQSLRPVTLPMCRFSYHSG*HKAVGS
Trigger: ACTACCAACAGCTTTATGGCACCCGCTGTGATAGCT...GAATCTGCACATTGGAAGGGTGACGGGGCGGAGGGACTGCAAGGGACGTTTAAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR GCA 90 bp AATGACTCAGAATTGAAGTGGGGGTGTGAGAAGGCTCTGTTCTCCCTTGTCCCACAGCTGACGTGCCACTaGTTGTCCAGTGCCAGAAGT +
Preference number: 4 (lower is better)
Translates to: NDSELKWGCEKALFSLVPQLTCH*LSSARS
Trigger: ACTTCTGGCACTGGACAAGCAGTGGCACGTCAGCTG...TGGGACAAGGGAGAACAGAGCCTTCTCACACCCCCACTTCAATTCTGAGTCATT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR GCA 90 bp ATCAATGACTCAGAATTGAAGTGGGGGTGTGAGAAGGCTCTGTTCTCCCTTGTCCTTCTCTGCCCTGGCTaGCTGCTTGCAGATTGGGTG +
Preference number: 4 (lower is better)
Translates to: INDSELKWGCEKALFSLVLLCPG*LLADWV
Trigger: CACCCAATCTGCAAGCAGGCAGCCAGGGCAGAGAAG...GACAAGGGAGAACAGAGCCTTCTCACACCCCCACTTCAATTCTGAGTCATTGAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR GCA 90 bp CTTCAGCAACGTCACACACACTTTCTCAGGCCTCCGTCCGTCACGTTCTGCCTTACTCGGAGATGGTCATaGCGAAGACTTGGTAGAACT +
Preference number: 4 (lower is better)
Translates to: LQQRHTHFLRPPSVTFCLTRRWS*RRLGRT
Trigger: AGTTCTACCAAGTCTTCGGCATGACCATCTCCGAGT...AAGGCAGAACGTGACGGACGGAGGCCTGAGAAAGTGTGTGTGACGTTGCTGAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR GCA 90 bp ATTAAACGTCCCTTGCAGTCCCTCCGCCCCGTCACCCTTCCAATGTGCAGATTCACTCGGAGATGGTCATaGCGAAGACTTGGTAGAACT +
Preference number: 4 (lower is better)
Translates to: IKRPLQSLRPVTLPMCRFTRRWS*RRLGRT
Trigger: AGTTCTACCAAGTCTTCGGCATGACCATCTCCGAGT...GAATCTGCACATTGGAAGGGTGACGGGGCGGAGGGACTGCAAGGGACGTTTAAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR CCA 90 bp GACTCAGAATTGAAGTGGGGGTGTGAGAAGGCTCTGTTCTCCCTTGTCCCAGAACATCGGATGTGGAAGTaGTTGTTGTGGACACGGACC +
Preference number: 4 (lower is better)
Translates to: DSELKWGCEKALFSLVPEHRMWK*LLWTRT
Trigger: GGTCCGTGTCCACAACAACCACTTCCACATCCGATG...TTCTGGGACAAGGGAGAACAGAGCCTTCTCACACCCCCACTTCAATTCTGAGTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR CCA 90 bp GTGGGCTCGCCTGACAGTACAGAAAAGCAAGTCTCACGGCAGGCAGCATGTTGTGTGCAGATGTACTCCTaGTTCTTGAAGAAGAAGCCC +
Preference number: 4 (lower is better)
Translates to: VGSPDSTEKQVSRQAACCVQMYS*FLKKKP
Trigger: GGGCTTCTTCTTCAAGAACCAGGAGTACATCTGCAC...ACAACATGCTGCCTGCCGTGAGACTTGCTTTTCTGTACTGTCAGGCGAGCCCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR CCA 90 bp AATGACTCAGAATTGAAGTGGGGGTGTGAGAAGGCTCTGTTCTCCCTTGTCCCAGCTTCTTCTCTGCCCTaGCTGCCTGCTTGCAGATTG +
Preference number: 4 (lower is better)
Translates to: NDSELKWGCEKALFSLVPASSLP*LPACRL
Trigger: CAATCTGCAAGCAGGCAGCCAGGGCAGAGAAGAAGC...TGGGACAAGGGAGAACAGAGCCTTCTCACACCCCCACTTCAATTCTGAGTCATT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR CCA 90 bp GCTCGCCTGACAGTACAGAAAAGCAAGTCTCACGGCAGGCAGCATGTTGTGTCCGACCTCACATCTAATTaGCTATGGTATGGGGAGCTC +
Preference number: 4 (lower is better)
Translates to: ARLTVQKSKSHGRQHVVSDLTSN*LWYGEL
Trigger: GAGCTCCCCATACCATAGCCAATTAGATGTGAGGTC...GGACACAACATGCTGCCTGCCGTGAGACTTGCTTTTCTGTACTGTCAGGCGAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR CCA 90 bp CTGGAGCTTATTGTGGGAACATTAGCCCTGTGGTGTGTAGATCATCAGGCACATCAGATGAGAACCTTCTaGCTCGGGGCACTTTGGGGG +
Preference number: 4 (lower is better)
Translates to: LELIVGTLALWCVDHQAHQMRTF*LGALWG
Trigger: CCCCCAAAGTGCCCCGAGCCAGAAGGTTCTCATCTG...ATGTGCCTGATGATCTACACACCACAGGGCTAATGTTCCCACAATAAGCTCCAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR TCA 90 bp CTTCAGCAACGTCACACACACTTTCTCAGGCCTCCGTCCGTCACGTTCTGCCTTCACATACTTGACAAGTaGAGCATCGGATGTGGAAGT +
Preference number: 4 (lower is better)
Translates to: LQQRHTHFLRPPSVTFCLHILDK*SIGCGS
Trigger: ACTTCCACATCCGATGCTTCACTTGTCAAGTATGTG...AAGGCAGAACGTGACGGACGGAGGCCTGAGAAAGTGTGTGTGACGTTGCTGAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR TCA 90 bp GACTCAGAATTGAAGTGGGGGTGTGAGAAGGCTCTGTTCTCCCTTGTCCCAGAAGACTGGGAGCACGTCTaGCATACACATTCTTTCCCA +
Preference number: 4 (lower is better)
Translates to: DSELKWGCEKALFSLVPEDWEHV*HTHSFP
Trigger: TGGGAAAGAATGTGTATGTCAGACGTGCTCCCAGTC...TTCTGGGACAAGGGAGAACAGAGCCTTCTCACACCCCCACTTCAATTCTGAGTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR TCA 90 bp CACATCACCTCATGGAGCGCTGAGCTCCTCCTATTTGGATGTGTGAAGAGAATTATCCGCATAGGAGCTTaGCCGCGCCTTCATCTCTTC +
Preference number: 4 (lower is better)
Translates to: HITSWSAELLLFGCVKRIIRIGA*PRLHLF
Trigger: GAAGAGATGAAGGCGCGGTCAAGCTCCTATGCGGAT...AATTCTCTTCACACATCCAAATAGGAGGAGCTCAGCGCTCCATGAGGTGATGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR TCA 90 bp AATGACTCAGAATTGAAGTGGGGGTGTGAGAAGGCTCTGTTCTCCCTTGTCCCAAACGAGGGGAGCCATTaGAGGACATCTCATAGCCAG +
Preference number: 4 (lower is better)
Translates to: NDSELKWGCEKALFSLVPNEGSH*RTSHSQ
Trigger: CTGGCTATGAGATGTCCTTCAATGGCTCCCCTCGTT...TGGGACAAGGGAGAACAGAGCCTTCTCACACCCCCACTTCAATTCTGAGTCATT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR GCA 90 bp CACATCACCTCATGGAGCGCTGAGCTCCTCCTATTTGGATGTGTGAAGAGAATTGTAGTGTTTCCCTCCTaGCTCCAAGACCCTGCCACT +
Preference number: 4 (lower is better)
Translates to: HITSWSAELLLFGCVKRIVVFPS*LQDPAT
Trigger: AGTGGCAGGGTCTTGGAGGCAGGAGGGAAACACTAC...AATTCTCTTCACACATCCAAATAGGAGGAGCTCAGCGCTCCATGAGGTGATGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR GCA 90 bp ACCGGGAAAGAACATGAGCAGTGTTGGTCAAGGCCTCATTCTGGAATCCTCTCATCAGATGTCCGCCTGTaGTTGAGCTTCTTCTCTGCC +
Preference number: 4 (lower is better)
Translates to: TGKEHEQCWSRPHSGILSSDVRL*LSFFSA
Trigger: GGCAGAGAAGAAGCTCAAGCACAGGCGGACATCTGA...TGAGAGGATTCCAGAATGAGGCCTTGACCAACACTGCTCATGTTCTTTCCCGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR GCA 90 bp GCTCGCCTGACAGTACAGAAAAGCAAGTCTCACGGCAGGCAGCATGTTGTGTCCAACCTTGGGGAGAGCTaGCAGGTCTTTGTAATTAAG +
Preference number: 4 (lower is better)
Translates to: ARLTVQKSKSHGRQHVVSNLGES*QVFVIK
Trigger: CTTAATTACAAAGACCTGGCAGCTCTCCCCAAGGTT...GGACACAACATGCTGCCTGCCGTGAGACTTGCTTTTCTGTACTGTCAGGCGAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR GCA 90 bp TCTGCACCAGCTGCACACGCCTTCAGCAACGTCACACACACTTTCTCAGGCCTCTGTTTTGCTCTTGGTTaGTGTGGACAAATCACCATG +
Preference number: 4 (lower is better)
Translates to: SAPAAHAFSNVTHTFSGLCFALG*CGQITM
Trigger: CATGGTGATTTGTCCACAGCAACCAAGAGCAAAACA...GAGGCCTGAGAAAGTGTGTGTGACGTTGCTGAAGGCGTGTGCAGCTGGTGCAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR GCA 90 bp GCTCGCCTGACAGTACAGAAAAGCAAGTCTCACGGCAGGCAGCATGTTGTGTCCTCTGGAGCTTGTGCATaGTTCGGTCAAAATCCTCTT +
Preference number: 4 (lower is better)
Translates to: ARLTVQKSKSHGRQHVVSSGACA*FGQNPL
Trigger: AAGAGGATTTTGACCGAAGCATGCACAAGCTCCAGA...GGACACAACATGCTGCCTGCCGTGAGACTTGCTTTTCTGTACTGTCAGGCGAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR CCA 90 bp CTGGAGCTTATTGTGGGAACATTAGCCCTGTGGTGTGTAGATCATCAGGCACATTGGAAGTGGTTGTTGTaGACACGGACCACCTCCCCT +
Preference number: 4 (lower is better)
Translates to: LELIVGTLALWCVDHQAHWKWLL*TRTTSP
Trigger: AGGGGAGGTGGTCCGTGTCCACAACAACCACTTCCA...ATGTGCCTGATGATCTACACACCACAGGGCTAATGTTCCCACAATAAGCTCCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR CCA 90 bp GACTCAGAATTGAAGTGGGGGTGTGAGAAGGCTCTGTTCTCCCTTGTCCCAGAATCAGTGAACATCTGGTaGCAGCGTACACATCTGGCA +
Preference number: 4 (lower is better)
Translates to: DSELKWGCEKALFSLVPESVNIW*QRTHLA
Trigger: TGCCAGATGTGTACGCTGCCACCAGATGTTCACTGA...TTCTGGGACAAGGGAGAACAGAGCCTTCTCACACCCCCACTTCAATTCTGAGTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR CCA 90 bp CACCTTTTCAAAGGAGAGCCAGTTCTTGGGGACTCAAGGTGGGACAGATGTTTCCCCTCAGTGAACATCTaGTGGCAGCGTACACATCTG +
Preference number: 4 (lower is better)
Translates to: HLFKGEPVLGDSRWDRCFPSVNI*WQRTHL
Trigger: CAGATGTGTACGCTGCCACCAGATGTTCACTGAGGG...GAAACATCTGTCCCACCTTGAGTCCCCAAGAACTGGCTCTCCTTTGAAAAGGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR CCA 90 bp TTGCGGGTGGTAGAGGGAAGGGAAGTGCCTTTTTCCGTTTCCTACCATGAATTCCCCTCAGTGAACATCTaGTGGCAGCGTACACATCTG +
Preference number: 4 (lower is better)
Translates to: LRVVEGREVPFSVSYHEFPSVNI*WQRTHL
Trigger: CAGATGTGTACGCTGCCACCAGATGTTCACTGAGGG...GAATTCATGGTAGGAAACGGAAAAAGGCACTTCCCTTCCCTCTACCACCCGCAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR CCA 90 bp ACCGGGAAAGAACATGAGCAGTGTTGGTCAAGGCCTCATTCTGGAATCCTCTCAAACCAGGGGGTGAGATaGAAGTTTCAGATGTCCGCC +
Preference number: 4 (lower is better)
Translates to: TGKEHEQCWSRPHSGILSNQGVR*KFQMSA
Trigger: GGCGGACATCTGAAACTTCCATCTCACCCCCTGGTT...TGAGAGGATTCCAGAATGAGGCCTTGACCAACACTGCTCATGTTCTTTCCCGGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR CCA 90 bp GTGGGCTCGCCTGACAGTACAGAAAAGCAAGTCTCACGGCAGGCAGCATGTTGTCTATACTTGGAGGCCTaGCTGATGTCTTCACTTGTT +
Preference number: 4 (lower is better)
Translates to: VGSPDSTEKQVSRQAACCLYLEA*LMSSLV
Trigger: AACAAGTGAAGACATCAGCCAGGCCTCCAAGTATAG...ACAACATGCTGCCTGCCGTGAGACTTGCTTTTCTGTACTGTCAGGCGAGCCCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR CCA 90 bp TTGCGGGTGGTAGAGGGAAGGGAAGTGCCTTTTTCCGTTTCCTACCATGAATTCAGCATAGTAGGGGTCTaGCGAGTAGGCTGGGCTATA +
Preference number: 4 (lower is better)
Translates to: LRVVEGREVPFSVSYHEFSIVGV*RVGWAI
Trigger: TATAGCCCAGCCTACTCGCCAGACCCCTACTATGCT...GAATTCATGGTAGGAAACGGAAAAAGGCACTTCCCTTCCCTCTACCACCCGCAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
3UTR CAA 72 bp CACACTTTCTCAGGCCTCCGTCCGTCACGTTCTGCCTaGCATCCGTTACGTTACGTTACGTTACGTTACGTT +
Preference number: 4 (lower is better)
Translates to: HTFSGLRPSRSA*HPLRYVTLRYV
Trigger: AACGTAACGTAACGTAACGTAACGTAACGGATGCAAGGCAGAACGTGACGGACGGAGGCCTGAGAAAGTGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR TCA 90 bp TTGCGGGTGGTAGAGGGAAGGGAAGTGCCTTTTTCCGTTTCCTACCATGAATTCGTCCAGTGCCAGAAGTaGCTGGCCATGTTTAATCTC +
Preference number: 4 (lower is better)
Translates to: LRVVEGREVPFSVSYHEFVQCQK*LAMFNL
Trigger: GAGATTAAACATGGCCAGTCACTTCTGGCACTGGAC...GAATTCATGGTAGGAAACGGAAAAAGGCACTTCCCTTCCCTCTACCACCCGCAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR TCA 90 bp CACCTTTTCAAAGGAGAGCCAGTTCTTGGGGACTCAAGGTGGGACAGATGTTTCACTTGGAGGCCTGGCTaGTGTCTTCACTTGTTTTGC +
Preference number: 4 (lower is better)
Translates to: HLFKGEPVLGDSRWDRCFTWRPG*CLHLFC
Trigger: GCAAAACAAGTGAAGACATCAGCCAGGCCTCCAAGT...GAAACATCTGTCCCACCTTGAGTCCCCAAGAACTGGCTCTCCTTTGAAAAGGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR TCA 90 bp ACCGGGAAAGAACATGAGCAGTGTTGGTCAAGGCCTCATTCTGGAATCCTCTCACCAATACTCAGACTCTaGAGCATAGTAGGGGTCTGG +
Preference number: 4 (lower is better)
Translates to: TGKEHEQCWSRPHSGILSPILRL*SIVGVW
Trigger: CCAGACCCCTACTATGCTTCAGAGTCTGAGTATTGG...TGAGAGGATTCCAGAATGAGGCCTTGACCAACACTGCTCATGTTCTTTCCCGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR TCA 90 bp CACATCACCTCATGGAGCGCTGAGCTCCTCCTATTTGGATGTGTGAAGAGAATTAACGAGGGGAGCCATTaGAGGACATCTCATAGCCAG +
Preference number: 4 (lower is better)
Translates to: HITSWSAELLLFGCVKRINEGSH*RTSHSQ
Trigger: CTGGCTATGAGATGTCCTTCAATGGCTCCCCTCGTT...AATTCTCTTCACACATCCAAATAGGAGGAGCTCAGCGCTCCATGAGGTGATGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR CCA 90 bp TTGCGGGTGGTAGAGGGAAGGGAAGTGCCTTTTTCCGTTTCCTACCATGAATTCACATCTAATTGGCTATaGTATGGGGAGCTCCGGCCA +
Preference number: 4 (lower is better)
Translates to: LRVVEGREVPFSVSYHEFTSNWL*YGELRP
Trigger: TGGCCGGAGCTCCCCATACCATAGCCAATTAGATGT...GAATTCATGGTAGGAAACGGAAAAAGGCACTTCCCTTCCCTCTACCACCCGCAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR CCA 90 bp ACCGGGAAAGAACATGAGCAGTGTTGGTCAAGGCCTCATTCTGGAATCCTCTCAGTTACTCTCTCCAGCTaGGATGTGAAAGTGCTTGGG +
Preference number: 4 (lower is better)
Translates to: TGKEHEQCWSRPHSGILSVTLSS*DVKVLG
Trigger: CCCAAGCACTTTCACATCCCAGCTGGAGAGAGTAAC...TGAGAGGATTCCAGAATGAGGCCTTGACCAACACTGCTCATGTTCTTTCCCGGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR CCA 90 bp GACTCAGAATTGAAGTGGGGGTGTGAGAAGGCTCTGTTCTCCCTTGTCCCAGAATGCTCTTGGTTGCTGTaGACAAATCACCATGCCGTT +
Preference number: 4 (lower is better)
Translates to: DSELKWGCEKALFSLVPECSWLL*TNHHAV
Trigger: AACGGCATGGTGATTTGTCCACAGCAACCAAGAGCA...TTCTGGGACAAGGGAGAACAGAGCCTTCTCACACCCCCACTTCAATTCTGAGTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR CCA 90 bp ATTAAACGTCCCTTGCAGTCCCTCCGCCCCGTCACCCTTCCAATGTGCAGATTCCACTTGTTTTGCTCTTaGTTGCTGTGGACAAATCAC +
Preference number: 4 (lower is better)
Translates to: IKRPLQSLRPVTLPMCRFHLFCS*LLWTNH
Trigger: GTGATTTGTCCACAGCAACCAAGAGCAAAACAAGTG...GAATCTGCACATTGGAAGGGTGACGGGGCGGAGGGACTGCAAGGGACGTTTAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR TCA 90 bp CTGGAGCTTATTGTGGGAACATTAGCCCTGTGGTGTGTAGATCATCAGGCACATGACTGGGAGCACGTCTaGCATACACATTCTTTCCCA +
Preference number: 4 (lower is better)
Translates to: LELIVGTLALWCVDHQAHDWEHV*HTHSFP
Trigger: TGGGAAAGAATGTGTATGTCAGACGTGCTCCCAGTC...ATGTGCCTGATGATCTACACACCACAGGGCTAATGTTCCCACAATAAGCTCCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR TCA 90 bp CACCTTTTCAAAGGAGAGCCAGTTCTTGGGGACTCAAGGTGGGACAGATGTTTCCACAAGTCTCACATTTaGTGCCAAACTGGGAGTGGT +
Preference number: 4 (lower is better)
Translates to: HLFKGEPVLGDSRWDRCFHKSHI*CQTGSG
Trigger: ACCACTCCCAGTTTGGCATCAAATGTGAGACTTGTG...GAAACATCTGTCCCACCTTGAGTCCCCAAGAACTGGCTCTCCTTTGAAAAGGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR GCA 90 bp AATGACTCAGAATTGAAGTGGGGGTGTGAGAAGGCTCTGTTCTCCCTTGTCCCAAGCTATCACAGCGGGTaGCATAAAGCTGTTGGTAGT +
Preference number: 4 (lower is better)
Translates to: NDSELKWGCEKALFSLVPSYHSG*HKAVGS
Trigger: ACTACCAACAGCTTTATGGCACCCGCTGTGATAGCT...TGGGACAAGGGAGAACAGAGCCTTCTCACACCCCCACTTCAATTCTGAGTCATT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR GCA 90 bp CTGGAGCTTATTGTGGGAACATTAGCCCTGTGGTGTGTAGATCATCAGGCACATTGCTTGCAGATTGGGTaGCAAACCTCAGAACCTGTG +
Preference number: 4 (lower is better)
Translates to: LELIVGTLALWCVDHQAHCLQIG*QTSEPV
Trigger: CACAGGTTCTGAGGTTTGGCACCCAATCTGCAAGCA...ATGTGCCTGATGATCTACACACCACAGGGCTAATGTTCCCACAATAAGCTCCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR GCA 90 bp CACATCACCTCATGGAGCGCTGAGCTCCTCCTATTTGGATGTGTGAAGAGAATTTGCTTGCAGATTGGGTaGCAAACCTCAGAACCTGTG +
Preference number: 4 (lower is better)
Translates to: HITSWSAELLLFGCVKRICLQIG*QTSEPV
Trigger: CACAGGTTCTGAGGTTTGGCACCCAATCTGCAAGCA...AATTCTCTTCACACATCCAAATAGGAGGAGCTCAGCGCTCCATGAGGTGATGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR GCA 90 bp AGGAGAGCCAGTTCTTGGGGACTCAAGGTGGGACAGATGTTTCAGTATAAAAAGTCAGATGTCCGCCTGTaGTTGAGCTTCTTCTCTGCC +
Preference number: 4 (lower is better)
Translates to: RRASSWGLKVGQMFQYKKSDVRL*LSFFSA
Trigger: GGCAGAGAAGAAGCTCAAGCACAGGCGGACATCTGA...CTTTTTATACTGAAACATCTGTCCCACCTTGAGTCCCCAAGAACTGGCTCTCCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR GCA 90 bp AGGAGAGCCAGTTCTTGGGGACTCAAGGTGGGACAGATGTTTCAGTATAAAAAGCATGCCCCAGTTGACTaGGTTCATGCTGTCGTAGTG +
Preference number: 4 (lower is better)
Translates to: RRASSWGLKVGQMFQYKKHAPVD*VHAVVV
Trigger: CACTACGACAGCATGAACGCAGTCAACTGGGGCATG...CTTTTTATACTGAAACATCTGTCCCACCTTGAGTCCCCAAGAACTGGCTCTCCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR CCA 90 bp CACCTTTTCAAAGGAGAGCCAGTTCTTGGGGACTCAAGGTGGGACAGATGTTTCGTGAAGCATCGGATGTaGAAGTGGTTGTTGTGGACA +
Preference number: 4 (lower is better)
Translates to: HLFKGEPVLGDSRWDRCFVKHRM*KWLLWT
Trigger: TGTCCACAACAACCACTTCCACATCCGATGCTTCAC...GAAACATCTGTCCCACCTTGAGTCCCCAAGAACTGGCTCTCCTTTGAAAAGGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR CCA 90 bp AGGAGAGCCAGTTCTTGGGGACTCAAGGTGGGACAGATGTTTCAGTATAAAAAGAACCAGGGGGTGAGATaGAAGTTTCAGATGTCCGCC +
Preference number: 4 (lower is better)
Translates to: RRASSWGLKVGQMFQYKKNQGVR*KFQMSA
Trigger: GGCGGACATCTGAAACTTCCATCTCACCCCCTGGTT...CTTTTTATACTGAAACATCTGTCCCACCTTGAGTCCCCAAGAACTGGCTCTCCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR CCA 90 bp CACATCACCTCATGGAGCGCTGAGCTCCTCCTATTTGGATGTGTGAAGAGAATTCGTCGGAGGTGTATCTaGAATGAGGCTCGTAGGAAA +
Preference number: 4 (lower is better)
Translates to: HITSWSAELLLFGCVKRIRRRCI*NEARRK
Trigger: TTTCCTACGAGCCTCATTCCAGATACACCTCCGACG...AATTCTCTTCACACATCCAAATAGGAGGAGCTCAGCGCTCCATGAGGTGATGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR CCA 90 bp AATGACTCAGAATTGAAGTGGGGGTGTGAGAAGGCTCTGTTCTCCCTTGTCCCAGGTAAGAGGTTGGCGTaGAGGACCTCACATCTAATT +
Preference number: 4 (lower is better)
Translates to: NDSELKWGCEKALFSLVPGKRLA*RTSHLI
Trigger: AATTAGATGTGAGGTCCTCCACGCCAACCTCTTACC...TGGGACAAGGGAGAACAGAGCCTTCTCACACCCCCACTTCAATTCTGAGTCATT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
3UTR CAA 72 bp AAGAGGGAACAGCTACCACTGATCAATGACTCAGAATaGAAGTGGGGGTGTGAGAAGGCTCTGTTCTCCCTT +
Preference number: 4 (lower is better)
Translates to: KREQLPLINDSE*KWGCEKALFSL
Trigger: AAGGGAGAACAGAGCCTTCTCACACCCCCACTTCAATTCTGAGTCATTGATCAGTGGTAGCTGTTCCCTCTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR TCA 90 bp CCATTATACAAGAGGATTATACTGCGTGTCAGGATAGAGATTTACATACATCTTAGCGGTAGCACTGGATaGCATTGGAGCCGCCCCGGG +
Preference number: 4 (lower is better)
Translates to: PLYKRIILRVRIEIYIHLSGSTG*HWSRPG
Trigger: CCCGGGGCGGCTCCAATGTCATCCAGTGCTACCGCT...AAGATGTATGTAAATCTCTATCCTGACACGCAGTATAATCCTCTTGTATAATGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR TCA 90 bp CACCTTTTCAAAGGAGAGCCAGTTCTTGGGGACTCAAGGTGGGACAGATGTTTCCACATACTTGACAAGTaGAGCATCGGATGTGGAAGT +
Preference number: 4 (lower is better)
Translates to: HLFKGEPVLGDSRWDRCFHILDK*SIGCGS
Trigger: ACTTCCACATCCGATGCTTCACTTGTCAAGTATGTG...GAAACATCTGTCCCACCTTGAGTCCCCAAGAACTGGCTCTCCTTTGAAAAGGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR CCA 90 bp ATCAATGACTCAGAATTGAAGTGGGGGTGTGAGAAGGCTCTGTTCTCCCTTGTCGGTAAGAGGTTGGCGTaGAGGACCTCACATCTAATT +
Preference number: 4 (lower is better)
Translates to: INDSELKWGCEKALFSLVGKRLA*RTSHLI
Trigger: AATTAGATGTGAGGTCCTCCACGCCAACCTCTTACC...GACAAGGGAGAACAGAGCCTTCTCACACCCCCACTTCAATTCTGAGTCATTGAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR CCA 90 bp ACCGGGAAAGAACATGAGCAGTGTTGGTCAAGGCCTCATTCTGGAATCCTCTCACTATACTTGGAGGCCTaGCTGATGTCTTCACTTGTT +
Preference number: 4 (lower is better)
Translates to: TGKEHEQCWSRPHSGILSLYLEA*LMSSLV
Trigger: AACAAGTGAAGACATCAGCCAGGCCTCCAAGTATAG...TGAGAGGATTCCAGAATGAGGCCTTGACCAACACTGCTCATGTTCTTTCCCGGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR CCA 90 bp AGGAGAGCCAGTTCTTGGGGACTCAAGGTGGGACAGATGTTTCAGTATAAAAAGGGTTCCTTCCTCTTGTaGTCACCAGTAGCAGCTCAT +
Preference number: 4 (lower is better)
Translates to: RRASSWGLKVGQMFQYKKGSFLL*SPVAAH
Trigger: ATGAGCTGCTACTGGTGACCACAAGAGGAAGGAACC...CTTTTTATACTGAAACATCTGTCCCACCTTGAGTCCCCAAGAACTGGCTCTCCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR GCA 90 bp TTGCGGGTGGTAGAGGGAAGGGAAGTGCCTTTTTCCGTTTCCTACCATGAATTCTGTTTTGCTCTTGGTTaGTGTGGACAAATCACCATG +
Preference number: 4 (lower is better)
Translates to: LRVVEGREVPFSVSYHEFCFALG*CGQITM
Trigger: CATGGTGATTTGTCCACAGCAACCAAGAGCAAAACA...GAATTCATGGTAGGAAACGGAAAAAGGCACTTCCCTTCCCTCTACCACCCGCAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
3UTR CAA 72 bp CAGTACAGAAAAGCAAGTCTCACGGCAGGCAGCATGTaGTGTCCCATTATACAAGAGGATTATACTGCGTGT +
Preference number: 4 (lower is better)
Translates to: QYRKASLTAGSM*CPIIQEDYTAC
Trigger: ACACGCAGTATAATCCTCTTGTATAATGGGACACAACATGCTGCCTGCCGTGAGACTTGCTTTTCTGTACTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR CCA 90 bp AGGAGAGCCAGTTCTTGGGGACTCAAGGTGGGACAGATGTTTCAGTATAAAAAGCACTTGTTTTGCTCTTaGTTGCTGTGGACAAATCAC +
Preference number: 4 (lower is better)
Translates to: RRASSWGLKVGQMFQYKKHLFCS*LLWTNH
Trigger: GTGATTTGTCCACAGCAACCAAGAGCAAAACAAGTG...CTTTTTATACTGAAACATCTGTCCCACCTTGAGTCCCCAAGAACTGGCTCTCCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR CCA 90 bp CCATTATACAAGAGGATTATACTGCGTGTCAGGATAGAGATTTACATACATCTTGCTTCTTCTCTGCCCTaGCTGCCTGCTTGCAGATTG +
Preference number: 4 (lower is better)
Translates to: PLYKRIILRVRIEIYIHLASSLP*LPACRL
Trigger: CAATCTGCAAGCAGGCAGCCAGGGCAGAGAAGAAGC...AAGATGTATGTAAATCTCTATCCTGACACGCAGTATAATCCTCTTGTATAATGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR CCA 90 bp CCATTATACAAGAGGATTATACTGCGTGTCAGGATAGAGATTTACATACATCTTAGCCTGGTAAGAGGTTaGCGTGGAGGACCTCACATC +
Preference number: 4 (lower is better)
Translates to: PLYKRIILRVRIEIYIHLSLVRG*RGGPHI
Trigger: GATGTGAGGTCCTCCACGCCAACCTCTTACCAGGCT...AAGATGTATGTAAATCTCTATCCTGACACGCAGTATAATCCTCTTGTATAATGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR TCA 90 bp CCATTATACAAGAGGATTATACTGCGTGTCAGGATAGAGATTTACATACATCTTAGGCAGATTTGGAGATaGGGGGATCACTGTCAGCCA +
Preference number: 4 (lower is better)
Translates to: PLYKRIILRVRIEIYIHLRQIWR*GDHCQP
Trigger: TGGCTGACAGTGATCCCCTCATCTCCAAATCTGCCT...AAGATGTATGTAAATCTCTATCCTGACACGCAGTATAATCCTCTTGTATAATGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR CAA 90 bp GGCCGGCGTCAGCCCTGGAGACTGGGGGAAGGTCCTGAAGCAGGGAGTAGAGGCGCCCTGGCTGCCTGCTaGCAGATTGGGTGCCAAACC +
Preference number: 5 (lower is better)
Translates to: GRRQPWRLGEGPEAGSRGALAAC*QIGCQT
Trigger: GGTTTGGCACCCAATCTGCAAGCAGGCAGCCAGGGC...GCCTCTACTCCCTGCTTCAGGACCTTCCCCCAGTCTCCAGGGCTGACGCCGGCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS TCA 90 bp GCTGGTGGAGCTCCGTGGAGGGGTCCAAGGATCCGCATAGGAGCTTaGCCGCGCCTTCATCTCTTCCTTCAGGATCAGCCGGCCAATCCC +
Preference number: 5 (lower is better)
Translates to: AGGAPWRGPRIRIGA*PRLHLFLQDQPANP
Trigger: GGGATTGGCCGGCTGATCCTGAAGGAAGAGATGAAGGCGCGGTCAAGCTCCTATGCGGATCCTTGGACCCCTCCACGGAGCTCCACCAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS CCA 90 bp AGGACATCTCATAGCCAGTGGTGTGCAGGGCCTCCCGACTGCTGGTaGAGCTCCGTGGAGGGGTCCAAGGATCCGCATAGGAGCTTGACC +
Preference number: 5 (lower is better)
Translates to: RTSHSQWCAGPPDCW*SSVEGSKDPHRSLT
Trigger: GGTCAAGCTCCTATGCGGATCCTTGGACCCCTCCACGGAGCTCCACCAGCAGTCGGGAGGCCCTGCACACCACTGGCTATGAGATGTCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR CAA 90 bp GCAGGGAGTAGAGGCTCCTCCAGGCACCTTTTCAAAGGAGAGCCAGTTCTTGGGCGGACCACCTCCCCTTaGCAGGTGTCTCCGCAGCGG +
Preference number: 5 (lower is better)
Translates to: AGSRGSSRHLFKGEPVLGRTTSP*QVSPQR
Trigger: CCGCTGCGGAGACACCTGCAAAGGGGAGGTGGTCCG...CCCAAGAACTGGCTCTCCTTTGAAAAGGTGCCTGGAGGAGCCTCTACTCCCTGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR CAA 90 bp CGTCACACACACTTTCTCAGGCCTCCGTCCGTCACGTTCTGCCTTGCATCCGTTCGGACCACCTCCCCTTaGCAGGTGTCTCCGCAGCGG +
Preference number: 5 (lower is better)
Translates to: RHTHFLRPPSVTFCLASVRTTSP*QVSPQR
Trigger: CCGCTGCGGAGACACCTGCAAAGGGGAGGTGGTCCG...AACGGATGCAAGGCAGAACGTGACGGACGGAGGCCTGAGAAAGTGTGTGTGACG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS GCA 90 bp GCCCTGAGCGGTAGTAATGAGGCGAGCGGGAGAAGGTGGGAGACATaGCTTGCCGACTGTAGGTGGGGGAATCAATGTAGCCAGGGCTGG +
Preference number: 5 (lower is better)
Translates to: ALSGSNEASGRRWET*LADCRWGNQCSQGW
Trigger: CCAGCCCTGGCTACATTGATTCCCCCACCTACAGTCGGCAAGGCATGTCTCCCACCTTCTCCCGCTCGCCTCATTACTACCGCTCAGGGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR CAA 90 bp GGCCGGCGTCAGCCCTGGAGACTGGGGGAAGGTCCTGAAGCAGGGAGTAGAGGCCTAGAAAAGCCGGGCTaGCTTCTTCAGTTCGTTCCT +
Preference number: 5 (lower is better)
Translates to: GRRQPWRLGEGPEAGSRGLEKPG*LLQFVP
Trigger: AGGAACGAACTGAAGAAGCAAGCCCGGCTTTTCTAG...GCCTCTACTCCCTGCTTCAGGACCTTCCCCCAGTCTCCAGGGCTGACGCCGGCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS CCA 90 bp ACATGCCTTGCCGACTGTAGGTGGGGGAATCAATGTAGCCAGGGCTaGAGGCCCGCCTCTGCCGGAGGTCCAGGTTCTCATAGATGTCCT +
Preference number: 5 (lower is better)
Translates to: TCLADCRWGNQCSQG*RPASAGGPGSHRCP
Trigger: AGGACATCTATGAGAACCTGGACCTCCGGCAGAGGCGGGCCTCCAGCCCTGGCTACATTGATTCCCCCACCTACAGTCGGCAAGGCATGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR CAA 90 bp GCAGGGAGTAGAGGCTCCTCCAGGCACCTTTTCAAAGGAGAGCCAGTTCTTGGGGGTGGGAGACATGCCTaGCCGACTGTAGGTGGGGGA +
Preference number: 5 (lower is better)
Translates to: AGSRGSSRHLFKGEPVLGGGRHA*PTVGGG
Trigger: TCCCCCACCTACAGTCGGCAAGGCATGTCTCCCACC...CCCAAGAACTGGCTCTCCTTTGAAAAGGTGCCTGGAGGAGCCTCTACTCCCTGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS CCA 90 bp CACTCTCAGGCCCTGAGCGGTAGTAATGAGGCGAGCGGGAGAAGGTaGGAGACATGCCTTGCCGACTGTAGGTGGGGGAATCAATGTAGC +
Preference number: 5 (lower is better)
Translates to: HSQALSGSNEASGRR*ETCLADCRWGNQCS
Trigger: GCTACATTGATTCCCCCACCTACAGTCGGCAAGGCATGTCTCCCACCTTCTCCCGCTCGCCTCATTACTACCGCTCAGGGCCTGAGAGTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR CAA 90 bp GGCCGGCGTCAGCCCTGGAGACTGGGGGAAGGTCCTGAAGCAGGGAGTAGAGGCTATGGAACACCGTCTTaGCTAATGTATTCCCCAGTG +
Preference number: 5 (lower is better)
Translates to: GRRQPWRLGEGPEAGSRGYGTPS*LMYSPV
Trigger: CACTGGGGAATACATTAGCAAAGACGGTGTTCCATA...GCCTCTACTCCCTGCTTCAGGACCTTCCCCCAGTCTCCAGGGCTGACGCCGGCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR CAA 90 bp TCTGCACCAGCTGCACACGCCTTCAGCAACGTCACACACACTTTCTCAGGCCTCGATGTCCGCCTGTGCTaGAGCTTCTTCTCTGCCCTG +
Preference number: 5 (lower is better)
Translates to: SAPAAHAFSNVTHTFSGLDVRLC*SFFSAL
Trigger: CAGGGCAGAGAAGAAGCTCAAGCACAGGCGGACATC...GAGGCCTGAGAAAGTGTGTGTGACGTTGCTGAAGGCGTGTGCAGCTGGTGCAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR CAA 90 bp CCTTGTCCCAGAAAGCACGAGAGTCAGTCCCTGAGGCCACCGGGAAAGAACATGGATGTCCGCCTGTGCTaGAGCTTCTTCTCTGCCCTG +
Preference number: 5 (lower is better)
Translates to: PCPRKHESQSLRPPGKNMDVRLC*SFFSAL
Trigger: CAGGGCAGAGAAGAAGCTCAAGCACAGGCGGACATC...CATGTTCTTTCCCGGTGGCCTCAGGGACTGACTCTCGTGCTTTCTGGGACAAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS CCA 90 bp CAGCTGGGATGTGAAAGTGCTTGGGAGCCTGGTAAGAGGTTGGCGTaGAGGACCTCACATCTAATTGGCTATGGTATGGGGAGCTCCGGC +
Preference number: 5 (lower is better)
Translates to: QLGCESAWEPGKRLA*RTSHLIGYGMGSSG
Trigger: GCCGGAGCTCCCCATACCATAGCCAATTAGATGTGAGGTCCTCCACGCCAACCTCTTACCAGGCTCCCAAGCACTTTCACATCCCAGCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR CAA 90 bp GTGGGCTCGCCTGACAGTACAGAAAAGCAAGTCTCACGGCAGGCAGCATGTTGTCTGACGTGCCACTGCTaGTCCAGTGCCAGAAGTGAC +
Preference number: 5 (lower is better)
Translates to: VGSPDSTEKQVSRQAACCLTCHC*SSARSD
Trigger: GTCACTTCTGGCACTGGACAAGCAGTGGCACGTCAG...ACAACATGCTGCCTGCCGTGAGACTTGCTTTTCTGTACTGTCAGGCGAGCCCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR CAA 90 bp GACTCAGAATTGAAGTGGGGGTGTGAGAAGGCTCTGTTCTCCCTTGTCCCAGAAGCCCTGGCTGCCTGCTaGCAGATTGGGTGCCAAACC +
Preference number: 5 (lower is better)
Translates to: DSELKWGCEKALFSLVPEALAAC*QIGCQT
Trigger: GGTTTGGCACCCAATCTGCAAGCAGGCAGCCAGGGC...TTCTGGGACAAGGGAGAACAGAGCCTTCTCACACCCCCACTTCAATTCTGAGTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR CAA 90 bp CTTCAGCAACGTCACACACACTTTCTCAGGCCTCCGTCCGTCACGTTCTGCCTTGAGCCTGGTAAGAGGTaGGCGTGGAGGACCTCACAT +
Preference number: 5 (lower is better)
Translates to: LQQRHTHFLRPPSVTFCLEPGKR*AWRTSH
Trigger: ATGTGAGGTCCTCCACGCCAACCTCTTACCAGGCTC...AAGGCAGAACGTGACGGACGGAGGCCTGAGAAAGTGTGTGTGACGTTGCTGAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR CAA 90 bp GCTCGCCTGACAGTACAGAAAAGCAAGTCTCACGGCAGGCAGCATGTTGTGTCCTCTCGCATGCCCCAGTaGACTGCGTTCATGCTGTCG +
Preference number: 5 (lower is better)
Translates to: ARLTVQKSKSHGRQHVVSSRMPQ*TAFMLS
Trigger: CGACAGCATGAACGCAGTCAACTGGGGCATGCGAGA...GGACACAACATGCTGCCTGCCGTGAGACTTGCTTTTCTGTACTGTCAGGCGAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR CAA 90 bp ATTAAACGTCCCTTGCAGTCCCTCCGCCCCGTCACCCTTCCAATGTGCAGATTCTCCGGTCCACATCCTTaGGCAGTCGGTTCCTTCCTC +
Preference number: 5 (lower is better)
Translates to: IKRPLQSLRPVTLPMCRFSGPHP*AVGSFL
Trigger: GAGGAAGGAACCGACTGCCAAAGGATGTGGACCGGA...GAATCTGCACATTGGAAGGGTGACGGGGCGGAGGGACTGCAAGGGACGTTTAAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR CAA 90 bp GCTCGCCTGACAGTACAGAAAAGCAAGTCTCACGGCAGGCAGCATGTTGTGTCCTCCGGTCCACATCCTTaGGCAGTCGGTTCCTTCCTC +
Preference number: 5 (lower is better)
Translates to: ARLTVQKSKSHGRQHVVSSGPHP*AVGSFL
Trigger: GAGGAAGGAACCGACTGCCAAAGGATGTGGACCGGA...GGACACAACATGCTGCCTGCCGTGAGACTTGCTTTTCTGTACTGTCAGGCGAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS TCA 90 bp AGCACAGATGACTCGGTTAGGCGACCCGATGCTGGAACCAGGGGGTaGGATGGAAGTTTCAGATGTCCGCCTGTGCTTGAGCTTCTTCTC +
Preference number: 5 (lower is better)
Translates to: STDDSVRRPDAGTRG*DGSFRCPPVLELLL
Trigger: GAGAAGAAGCTCAAGCACAGGCGGACATCTGAAACTTCCATCTCACCCCCTGGTTCCAGCATCGGGTCGCCTAACCGAGTCATCTGTGCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR CAA 90 bp CCTTGTCCCAGAAAGCACGAGAGTCAGTCCCTGAGGCCACCGGGAAAGAACATGGGTGCCATAAAGCTGTaGGTAGTCCTGGGTGCAGAT +
Preference number: 5 (lower is better)
Translates to: PCPRKHESQSLRPPGKNMGAIKL*VVLGAD
Trigger: ATCTGCACCCAGGACTACCAACAGCTTTATGGCACC...CATGTTCTTTCCCGGTGGCCTCAGGGACTGACTCTCGTGCTTTCTGGGACAAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR CAA 90 bp CTTCAGCAACGTCACACACACTTTCTCAGGCCTCCGTCCGTCACGTTCTGCCTTCTGCCTGCTTGCAGATaGGGTGCCAAACCTCAGAAC +
Preference number: 5 (lower is better)
Translates to: LQQRHTHFLRPPSVTFCLLPACR*GAKPQN
Trigger: GTTCTGAGGTTTGGCACCCAATCTGCAAGCAGGCAG...AAGGCAGAACGTGACGGACGGAGGCCTGAGAAAGTGTGTGTGACGTTGCTGAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR CAA 90 bp ATTAAACGTCCCTTGCAGTCCCTCCGCCCCGTCACCCTTCCAATGTGCAGATTCAATGAGGTCGGGGCGTaGCACCTCGTAGATGGACTT +
Preference number: 5 (lower is better)
Translates to: IKRPLQSLRPVTLPMCRFNEVGA*HLVDGL
Trigger: AAGTCCATCTACGAGGTGCAACGCCCCGACCTCATT...GAATCTGCACATTGGAAGGGTGACGGGGCGGAGGGACTGCAAGGGACGTTTAAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR CAA 90 bp CTTCAGCAACGTCACACACACTTTCTCAGGCCTCCGTCCGTCACGTTCTGCCTTAATGAGGTCGGGGCGTaGCACCTCGTAGATGGACTT +
Preference number: 5 (lower is better)
Translates to: LQQRHTHFLRPPSVTFCLNEVGA*HLVDGL
Trigger: AAGTCCATCTACGAGGTGCAACGCCCCGACCTCATT...AAGGCAGAACGTGACGGACGGAGGCCTGAGAAAGTGTGTGTGACGTTGCTGAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR CAA 90 bp GCTCGCCTGACAGTACAGAAAAGCAAGTCTCACGGCAGGCAGCATGTTGTGTCCGATCCGCATAGGAGCTaGACCGCGCCTTCATCTCTT +
Preference number: 5 (lower is better)
Translates to: ARLTVQKSKSHGRQHVVSDPHRS*TAPSSL
Trigger: AAGAGATGAAGGCGCGGTCAAGCTCCTATGCGGATC...GGACACAACATGCTGCCTGCCGTGAGACTTGCTTTTCTGTACTGTCAGGCGAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR CAA 90 bp GTGGGCTCGCCTGACAGTACAGAAAAGCAAGTCTCACGGCAGGCAGCATGTTGTGGCAGTGAGGCAGATTaGGAGATGAGGGGATCACTG +
Preference number: 5 (lower is better)
Translates to: VGSPDSTEKQVSRQAACCGSEAD*EMRGSL
Trigger: CAGTGATCCCCTCATCTCCAAATCTGCCTCACTGCC...ACAACATGCTGCCTGCCGTGAGACTTGCTTTTCTGTACTGTCAGGCGAGCCCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR CAA 90 bp CGTCACACACACTTTCTCAGGCCTCCGTCCGTCACGTTCTGCCTTGCATCCGTTATGTACTCCTGGTTCTaGAAGAAGAAGCCCGACTGG +
Preference number: 5 (lower is better)
Translates to: RHTHFLRPPSVTFCLASVMYSWF*KKKPDW
Trigger: CCAGTCGGGCTTCTTCTTCAAGAACCAGGAGTACAT...AACGGATGCAAGGCAGAACGTGACGGACGGAGGCCTGAGAAAGTGTGTGTGACG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS TCA 90 bp GTAGCAGCTCATAAGGATAGATCTTGTACTCTCGCATGCCCCAGTTaGCTGCGTTCATGCTGTCGTAGTGGAAGAGGTCCGCACTGGGTG +
Preference number: 5 (lower is better)
Translates to: VAAHKDRSCTLACPS*LRSCCRSGRGPHWV
Trigger: CACCCAGTGCGGACCTCTTCCACTACGACAGCATGAACGCAGTCAACTGGGGCATGCGAGAGTACAAGATCTATCCTTATGAGCTGCTAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS GCA 90 bp AGTTTCAGATGTCCGCCTGTGCTTGAGCTTCTTCTCTGCCCTGGCTaGCTGCTTGCAGATTGGGTGCCAAACCTCAGAACCTGTGAGATA +
Preference number: 5 (lower is better)
Translates to: SFRCPPVLELLLCPG*LLADWVPNLRTCEI
Trigger: TATCTCACAGGTTCTGAGGTTTGGCACCCAATCTGCAAGCAGGCAGCCAGGGCAGAGAAGAAGCTCAAGCACAGGCGGACATCTGAAACT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS GCA 90 bp CAGCTCATAAGGATAGATCTTGTACTCTCGCATGCCCCAGTTGACTaGGTTCATGCTGTCGTAGTGGAAGAGGTCCGCACTGGGTGTCCT +
Preference number: 5 (lower is better)
Translates to: QLIRIDLVLSHAPVD*VHAVVVEEVRTGCP
Trigger: AGGACACCCAGTGCGGACCTCTTCCACTACGACAGCATGAACGCAGTCAACTGGGGCATGCGAGAGTACAAGATCTATCCTTATGAGCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR CAA 90 bp ACCGGGAAAGAACATGAGCAGTGTTGGTCAAGGCCTCATTCTGGAATCCTCTCAGCTTGCTGCTGGTCATaGACTGGGAGCACGTCTGAC +
Preference number: 5 (lower is better)
Translates to: TGKEHEQCWSRPHSGILSACCWS*TGSTSD
Trigger: GTCAGACGTGCTCCCAGTCAATGACCAGCAGCAAGC...TGAGAGGATTCCAGAATGAGGCCTTGACCAACACTGCTCATGTTCTTTCCCGGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR CAA 90 bp ACCGGGAAAGAACATGAGCAGTGTTGGTCAAGGCCTCATTCTGGAATCCTCTCACTTGGTCCACGGATCTaGATCGGCTTGCTGCTGGTC +
Preference number: 5 (lower is better)
Translates to: TGKEHEQCWSRPHSGILSLGPRI*IGLLLV
Trigger: GACCAGCAGCAAGCCGATCAAGATCCGTGGACCAAG...TGAGAGGATTCCAGAATGAGGCCTTGACCAACACTGCTCATGTTCTTTCCCGGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR CAA 90 bp TTGCGGGTGGTAGAGGGAAGGGAAGTGCCTTTTTCCGTTTCCTACCATGAATTCCTGACGTGCCACTGCTaGTCCAGTGCCAGAAGTGAC +
Preference number: 5 (lower is better)
Translates to: LRVVEGREVPFSVSYHEFLTCHC*SSARSD
Trigger: GTCACTTCTGGCACTGGACAAGCAGTGGCACGTCAG...GAATTCATGGTAGGAAACGGAAAAAGGCACTTCCCTTCCCTCTACCACCCGCAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS TCA 90 bp ACAGTGGCTTGGTCCACGGATCTTGATCGGCTTGCTGCTGGTCATTaGCTGGGAGCACGTCTGACATACACATTCTTTCCCACTGAAGGT +
Preference number: 5 (lower is better)
Translates to: TVAWSTDLDRLAAGH*LGARLTYTFFPTEG
Trigger: ACCTTCAGTGGGAAAGAATGTGTATGTCAGACGTGCTCCCAGTCAATGACCAGCAGCAAGCCGATCAAGATCCGTGGACCAAGCCACTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS GCA 90 bp CCAGTGAGGATGACGCTACAGGTCTGGCATTTGAAACAGCTGACGTaGCACTGCTTGTCCAGTGCCAGAAGTGACTGGCCATGTTTAATC +
Preference number: 5 (lower is better)
Translates to: PVRMTLQVWHLKQLT*HCLSSARSDWPCLI
Trigger: GATTAAACATGGCCAGTCACTTCTGGCACTGGACAAGCAGTGGCACGTCAGCTGTTTCAAATGCCAGACCTGTAGCGTCATCCTCACTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS CCA 90 bp AGCGAGTCCGGTCCACATCCTTTGGCAGTCGGTTCCTTCCTCTTGTaGTCACCAGTAGCAGCTCATAAGGATAGATCTTGTACTCTCGCA +
Preference number: 5 (lower is better)
Translates to: SESGPHPLAVGSFLL*SPVAAHKDRSCTLA
Trigger: TGCGAGAGTACAAGATCTATCCTTATGAGCTGCTACTGGTGACCACAAGAGGAAGGAACCGACTGCCAAAGGATGTGGACCGGACTCGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR CAA 90 bp AATGACTCAGAATTGAAGTGGGGGTGTGAGAAGGCTCTGTTCTCCCTTGTCCCAATGTGGAAGTGGTTGTaGTGGACACGGACCACCTCC +
Preference number: 5 (lower is better)
Translates to: NDSELKWGCEKALFSLVPMWKWL*WTRTTS
Trigger: GGAGGTGGTCCGTGTCCACAACAACCACTTCCACAT...TGGGACAAGGGAGAACAGAGCCTTCTCACACCCCCACTTCAATTCTGAGTCATT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR CAA 90 bp ACCGGGAAAGAACATGAGCAGTGTTGGTCAAGGCCTCATTCTGGAATCCTCTCAATGTGGAAGTGGTTGTaGTGGACACGGACCACCTCC +
Preference number: 5 (lower is better)
Translates to: TGKEHEQCWSRPHSGILSMWKWL*WTRTTS
Trigger: GGAGGTGGTCCGTGTCCACAACAACCACTTCCACAT...TGAGAGGATTCCAGAATGAGGCCTTGACCAACACTGCTCATGTTCTTTCCCGGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR CAA 90 bp ATCAATGACTCAGAATTGAAGTGGGGGTGTGAGAAGGCTCTGTTCTCCCTTGTCCTTGGTCCACGGATCTaGATCGGCTTGCTGCTGGTC +
Preference number: 5 (lower is better)
Translates to: INDSELKWGCEKALFSLVLGPRI*IGLLLV
Trigger: GACCAGCAGCAAGCCGATCAAGATCCGTGGACCAAG...GACAAGGGAGAACAGAGCCTTCTCACACCCCCACTTCAATTCTGAGTCATTGAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR CAA 90 bp CTTCAGCAACGTCACACACACTTTCTCAGGCCTCCGTCCGTCACGTTCTGCCTTTCACAAGTCTCACATTaGATGCCAAACTGGGAGTGG +
Preference number: 5 (lower is better)
Translates to: LQQRHTHFLRPPSVTFCLSQVSH*MPNWEW
Trigger: CCACTCCCAGTTTGGCATCAAATGTGAGACTTGTGA...AAGGCAGAACGTGACGGACGGAGGCCTGAGAAAGTGTGTGTGACGTTGCTGAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR CAA 90 bp CACATCACCTCATGGAGCGCTGAGCTCCTCCTATTTGGATGTGTGAAGAGAATTGAGCCTGGTAAGAGGTaGGCGTGGAGGACCTCACAT +
Preference number: 5 (lower is better)
Translates to: HITSWSAELLLFGCVKRIEPGKR*AWRTSH
Trigger: ATGTGAGGTCCTCCACGCCAACCTCTTACCAGGCTC...AATTCTCTTCACACATCCAAATAGGAGGAGCTCAGCGCTCCATGAGGTGATGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR CAA 90 bp CACATCACCTCATGGAGCGCTGAGCTCCTCCTATTTGGATGTGTGAAGAGAATTTCTCGCATGCCCCAGTaGACTGCGTTCATGCTGTCG +
Preference number: 5 (lower is better)
Translates to: HITSWSAELLLFGCVKRISRMPQ*TAFMLS
Trigger: CGACAGCATGAACGCAGTCAACTGGGGCATGCGAGA...AATTCTCTTCACACATCCAAATAGGAGGAGCTCAGCGCTCCATGAGGTGATGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS GCA 90 bp AGGATGACGCTACAGGTCTGGCATTTGAAACAGCTGACGTGCCACTaGTTGTCCAGTGCCAGAAGTGACTGGCCATGTTTAATCTCCTCT +
Preference number: 5 (lower is better)
Translates to: RMTLQVWHLKQLTCH*LSSARSDWPCLISS
Trigger: AGAGGAGATTAAACATGGCCAGTCACTTCTGGCACTGGACAAGCAGTGGCACGTCAGCTGTTTCAAATGCCAGACCTGTAGCGTCATCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR CAA 90 bp AGGAGAGCCAGTTCTTGGGGACTCAAGGTGGGACAGATGTTTCAGTATAAAAAGCGGATGTGGAAGTGGTaGTTGTGGACACGGACCACC +
Preference number: 5 (lower is better)
Translates to: RRASSWGLKVGQMFQYKKRMWKW*LWTRTT
Trigger: GGTGGTCCGTGTCCACAACAACCACTTCCACATCCG...CTTTTTATACTGAAACATCTGTCCCACCTTGAGTCCCCAAGAACTGGCTCTCCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR CAA 90 bp GACTCAGAATTGAAGTGGGGGTGTGAGAAGGCTCTGTTCTCCCTTGTCCCAGAAATGTACTCCTGGTTCTaGAAGAAGAAGCCCGACTGG +
Preference number: 5 (lower is better)
Translates to: DSELKWGCEKALFSLVPEMYSWF*KKKPDW
Trigger: CCAGTCGGGCTTCTTCTTCAAGAACCAGGAGTACAT...TTCTGGGACAAGGGAGAACAGAGCCTTCTCACACCCCCACTTCAATTCTGAGTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR CAA 90 bp AATGACTCAGAATTGAAGTGGGGGTGTGAGAAGGCTCTGTTCTCCCTTGTCCCACTACAGGTCTGGCATTaGAAACAGCTGACGTGCCAC +
Preference number: 5 (lower is better)
Translates to: NDSELKWGCEKALFSLVPLQVWH*KQLTCH
Trigger: GTGGCACGTCAGCTGTTTCAAATGCCAGACCTGTAG...TGGGACAAGGGAGAACAGAGCCTTCTCACACCCCCACTTCAATTCTGAGTCATT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR CAA 90 bp ATTAAACGTCCCTTGCAGTCCCTCCGCCCCGTCACCCTTCCAATGTGCAGATTCTATGGAACACCGTCTTaGCTAATGTATTCCCCAGTG +
Preference number: 5 (lower is better)
Translates to: IKRPLQSLRPVTLPMCRFYGTPS*LMYSPV
Trigger: CACTGGGGAATACATTAGCAAAGACGGTGTTCCATA...GAATCTGCACATTGGAAGGGTGACGGGGCGGAGGGACTGCAAGGGACGTTTAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR CAA 90 bp CACATCACCTCATGGAGCGCTGAGCTCCTCCTATTTGGATGTGTGAAGAGAATTCTGCCTGCTTGCAGATaGGGTGCCAAACCTCAGAAC +
Preference number: 5 (lower is better)
Translates to: HITSWSAELLLFGCVKRILPACR*GAKPQN
Trigger: GTTCTGAGGTTTGGCACCCAATCTGCAAGCAGGCAG...AATTCTCTTCACACATCCAAATAGGAGGAGCTCAGCGCTCCATGAGGTGATGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR CAA 90 bp TCTGCACCAGCTGCACACGCCTTCAGCAACGTCACACACACTTTCTCAGGCCTCTTGTTTTGCTCTTGGTaGCTGTGGACAAATCACCAT +
Preference number: 5 (lower is better)
Translates to: SAPAAHAFSNVTHTFSGLLFCSW*LWTNHH
Trigger: ATGGTGATTTGTCCACAGCAACCAAGAGCAAAACAA...GAGGCCTGAGAAAGTGTGTGTGACGTTGCTGAAGGCGTGTGCAGCTGGTGCAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR CAA 90 bp CGTCACACACACTTTCTCAGGCCTCCGTCCGTCACGTTCTGCCTTGCATCCGTTTCACTTGTTTTGCTCTaGGTTGCTGTGGACAAATCA +
Preference number: 5 (lower is better)
Translates to: RHTHFLRPPSVTFCLASVSLVLL*VAVDKS
Trigger: TGATTTGTCCACAGCAACCAAGAGCAAAACAAGTGA...AACGGATGCAAGGCAGAACGTGACGGACGGAGGCCTGAGAAAGTGTGTGTGACG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR CAA 90 bp ATCAATGACTCAGAATTGAAGTGGGGGTGTGAGAAGGCTCTGTTCTCCCTTGTCGATCCGCATAGGAGCTaGACCGCGCCTTCATCTCTT +
Preference number: 5 (lower is better)
Translates to: INDSELKWGCEKALFSLVDPHRS*TAPSSL
Trigger: AAGAGATGAAGGCGCGGTCAAGCTCCTATGCGGATC...GACAAGGGAGAACAGAGCCTTCTCACACCCCCACTTCAATTCTGAGTCATTGAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR CAA 90 bp ATCAATGACTCAGAATTGAAGTGGGGGTGTGAGAAGGCTCTGTTCTCCCTTGTCGGCAGTGAGGCAGATTaGGAGATGAGGGGATCACTG +
Preference number: 5 (lower is better)
Translates to: INDSELKWGCEKALFSLVGSEAD*EMRGSL
Trigger: CAGTGATCCCCTCATCTCCAAATCTGCCTCACTGCC...GACAAGGGAGAACAGAGCCTTCTCACACCCCCACTTCAATTCTGAGTCATTGAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR CAA 90 bp ATCAATGACTCAGAATTGAAGTGGGGGTGTGAGAAGGCTCTGTTCTCCCTTGTCGTCGGTTCCTTCCTCTaGTGGTCACCAGTAGCAGCT +
Preference number: 5 (lower is better)
Translates to: INDSELKWGCEKALFSLVVGSFL*WSPVAA
Trigger: AGCTGCTACTGGTGACCACAAGAGGAAGGAACCGAC...GACAAGGGAGAACAGAGCCTTCTCACACCCCCACTTCAATTCTGAGTCATTGAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR CAA 90 bp ATCAATGACTCAGAATTGAAGTGGGGGTGTGAGAAGGCTCTGTTCTCCCTTGTCGGTGCCATAAAGCTGTaGGTAGTCCTGGGTGCAGAT +
Preference number: 5 (lower is better)
Translates to: INDSELKWGCEKALFSLVGAIKL*VVLGAD
Trigger: ATCTGCACCCAGGACTACCAACAGCTTTATGGCACC...GACAAGGGAGAACAGAGCCTTCTCACACCCCCACTTCAATTCTGAGTCATTGAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR CAA 90 bp CACATCACCTCATGGAGCGCTGAGCTCCTCCTATTTGGATGTGTGAAGAGAATTCTACAGGTCTGGCATTaGAAACAGCTGACGTGCCAC +
Preference number: 5 (lower is better)
Translates to: HITSWSAELLLFGCVKRILQVWH*KQLTCH
Trigger: GTGGCACGTCAGCTGTTTCAAATGCCAGACCTGTAG...AATTCTCTTCACACATCCAAATAGGAGGAGCTCAGCGCTCCATGAGGTGATGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR CAA 90 bp ATTAAACGTCCCTTGCAGTCCCTCCGCCCCGTCACCCTTCCAATGTGCAGATTCTCACTTGTTTTGCTCTaGGTTGCTGTGGACAAATCA +
Preference number: 5 (lower is better)
Translates to: IKRPLQSLRPVTLPMCRFSLVLL*VAVDKS
Trigger: TGATTTGTCCACAGCAACCAAGAGCAAAACAAGTGA...GAATCTGCACATTGGAAGGGTGACGGGGCGGAGGGACTGCAAGGGACGTTTAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR CAA 90 bp AGGAGAGCCAGTTCTTGGGGACTCAAGGTGGGACAGATGTTTCAGTATAAAAAGGTCGGTTCCTTCCTCTaGTGGTCACCAGTAGCAGCT +
Preference number: 5 (lower is better)
Translates to: RRASSWGLKVGQMFQYKKVGSFL*WSPVAA
Trigger: AGCTGCTACTGGTGACCACAAGAGGAAGGAACCGAC...CTTTTTATACTGAAACATCTGTCCCACCTTGAGTCCCCAAGAACTGGCTCTCCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS TCA 90 bp CGGATCTTGATCGGCTTGCTGCTGGTCATTGACTGGGAGCACGTCTaGCATACACATTCTTTCCCACTGAAGGTCACCTTATCTCCAATA +
Preference number: 5 (lower is better)
Translates to: RILIGLLLVIDWEHV*HTHSFPLKVTLSPI
Trigger: TATTGGAGATAAGGTGACCTTCAGTGGGAAAGAATGTGTATGTCAGACGTGCTCCCAGTCAATGACCAGCAGCAAGCCGATCAAGATCCG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR CAA 90 bp TTGCGGGTGGTAGAGGGAAGGGAAGTGCCTTTTTCCGTTTCCTACCATGAATTCTCACAAGTCTCACATTaGATGCCAAACTGGGAGTGG +
Preference number: 5 (lower is better)
Translates to: LRVVEGREVPFSVSYHEFSQVSH*MPNWEW
Trigger: CCACTCCCAGTTTGGCATCAAATGTGAGACTTGTGA...GAATTCATGGTAGGAAACGGAAAAAGGCACTTCCCTTCCCTCTACCACCCGCAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR CAA 90 bp CACATCACCTCATGGAGCGCTGAGCTCCTCCTATTTGGATGTGTGAAGAGAATTCTAGAAAAGCCGGGCTaGCTTCTTCAGTTCGTTCCT +
Preference number: 5 (lower is better)
Translates to: HITSWSAELLLFGCVKRILEKPG*LLQFVP
Trigger: AGGAACGAACTGAAGAAGCAAGCCCGGCTTTTCTAG...AATTCTCTTCACACATCCAAATAGGAGGAGCTCAGCGCTCCATGAGGTGATGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS-3UTR CAA 90 bp CACCTTTTCAAAGGAGAGCCAGTTCTTGGGGACTCAAGGTGGGACAGATGTTTCTTGTTTTGCTCTTGGTaGCTGTGGACAAATCACCAT +
Preference number: 5 (lower is better)
Translates to: HLFKGEPVLGDSRWDRCFLFCSW*LWTNHH
Trigger: ATGGTGATTTGTCCACAGCAACCAAGAGCAAAACAA...GAAACATCTGTCCCACCTTGAGTCCCCAAGAACTGGCTCTCCTTTGAAAAGGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS CCA 72 bp GCCGACTGTAGGTGGGGGAATCAATGTAGCCAGGGCTaGAGGCCCGCCTCTGCCGGAGGTCCAGGTTCTCAT +
Preference number: 6 (lower is better)
Translates to: ADCRWGNQCSQG*RPASAGGPGSH
Trigger: ATGAGAACCTGGACCTCCGGCAGAGGCGGGCCTCCAGCCCTGGCTACATTGATTCCCCCACCTACAGTCGGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS CAA 90 bp TGCTGGTGGAGCTCCGTGGAGGGGTCCAAGGATCCGCATAGGAGCTaGACCGCGCCTTCATCTCTTCCTTCAGGATCAGCCGGCCAATCC +
Preference number: 6 (lower is better)
Translates to: CWWSSVEGSKDPHRS*TAPSSLPSGSAGQS
Trigger: GGATTGGCCGGCTGATCCTGAAGGAAGAGATGAAGGCGCGGTCAAGCTCCTATGCGGATCCTTGGACCCCTCCACGGAGCTCCACCAGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS TCA 72 bp GCTCCGTGGAGGGGTCCAAGGATCCGCATAGGAGCTTaGCCGCGCCTTCATCTCTTCCTTCAGGATCAGCCG +
Preference number: 6 (lower is better)
Translates to: APWRGPRIRIGA*PRLHLFLQDQP
Trigger: CGGCTGATCCTGAAGGAAGAGATGAAGGCGCGGTCAAGCTCCTATGCGGATCCTTGGACCCCTCCACGGAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS CCA 72 bp GCCCTGAGCGGTAGTAATGAGGCGAGCGGGAGAAGGTaGGAGACATGCCTTGCCGACTGTAGGTGGGGGAAT +
Preference number: 6 (lower is better)
Translates to: ALSGSNEASGRR*ETCLADCRWGN
Trigger: ATTCCCCCACCTACAGTCGGCAAGGCATGTCTCCCACCTTCTCCCGCTCGCCTCATTACTACCGCTCAGGGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS CCA 72 bp GAGGTTGGCGTGGAGGACCTCACATCTAATTGGCTATaGTATGGGGAGCTCCGGCCACTCTCAGGCCCTGAG +
Preference number: 6 (lower is better)
Translates to: EVGVEDLTSNWL*YGELRPLSGPE
Trigger: CTCAGGGCCTGAGAGTGGCCGGAGCTCCCCATACCATAGCCAATTAGATGTGAGGTCCTCCACGCCAACCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS CAA 72 bp AGCTCCGTGGAGGGGTCCAAGGATCCGCATAGGAGCTaGACCGCGCCTTCATCTCTTCCTTCAGGATCAGCC +
Preference number: 6 (lower is better)
Translates to: SSVEGSKDPHRS*TAPSSLPSGSA
Trigger: GGCTGATCCTGAAGGAAGAGATGAAGGCGCGGTCAAGCTCCTATGCGGATCCTTGGACCCCTCCACGGAGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS CAA 90 bp CCTCCTGGGACAGGTGGCGCTCTAAGCGAGTCCGGTCCACATCCTTaGGCAGTCGGTTCCTTCCTCTTGTGGTCACCAGTAGCAGCTCAT +
Preference number: 6 (lower is better)
Translates to: PPGTGGALSESGPHP*AVGSFLLWSPVAAH
Trigger: ATGAGCTGCTACTGGTGACCACAAGAGGAAGGAACCGACTGCCAAAGGATGTGGACCGGACTCGCTTAGAGCGCCACCTGTCCCAGGAGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS TCA 72 bp CTTTGCACCCAGCACAGTGGCTTGGTCCACGGATCTTaGTCGGCTTGCTGCTGGTCATTGACTGGGAGCACG +
Preference number: 6 (lower is better)
Translates to: LCTQHSGLVHGS*SACCWSLTGST
Trigger: CGTGCTCCCAGTCAATGACCAGCAGCAAGCCGATCAAGATCCGTGGACCAAGCCACTGTGCTGGGTGCAAAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS TCA 72 bp GACTCGGTTAGGCGACCCGATGCTGGAACCAGGGGGTaGGATGGAAGTTTCAGATGTCCGCCTGTGCTTGAG +
Preference number: 6 (lower is better)
Translates to: DSVRRPDAGTRG*DGSFRCPPVLE
Trigger: CTCAAGCACAGGCGGACATCTGAAACTTCCATCTCACCCCCTGGTTCCAGCATCGGGTCGCCTAACCGAGTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS CAA 72 bp GTAATGAGGCGAGCGGGAGAAGGTGGGAGACATGCCTaGCCGACTGTAGGTGGGGGAATCAATGTAGCCAGG +
Preference number: 6 (lower is better)
Translates to: VMRRAGEGGRHA*PTVGGGINVAR
Trigger: CCTGGCTACATTGATTCCCCCACCTACAGTCGGCAAGGCATGTCTCCCACCTTCTCCCGCTCGCCTCATTAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS GCA 72 bp GGTAGTAATGAGGCGAGCGGGAGAAGGTGGGAGACATaGCTTGCCGACTGTAGGTGGGGGAATCAATGTAGC +
Preference number: 6 (lower is better)
Translates to: GSNEASGRRWET*LADCRWGNQCS
Trigger: GCTACATTGATTCCCCCACCTACAGTCGGCAAGGCATGTCTCCCACCTTCTCCCGCTCGCCTCATTACTACC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS GCA 72 bp TCCAGAGGGCTAGCCTCTCGAACTCGGAGATGGTCATaGCGAAGACTTGGTAGAACTCCTCCTGGGACAGGT +
Preference number: 6 (lower is better)
Translates to: SRGLASRTRRWS*RRLGRTPPGTG
Trigger: ACCTGTCCCAGGAGGAGTTCTACCAAGTCTTCGGCATGACCATCTCCGAGTTCGAGAGGCTAGCCCTCTGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS CAA 72 bp TCTTTGCACCCAGCACAGTGGCTTGGTCCACGGATCTaGATCGGCTTGCTGCTGGTCATTGACTGGGAGCAC +
Preference number: 6 (lower is better)
Translates to: SLHPAQWLGPRI*IGLLLVIDWEH
Trigger: GTGCTCCCAGTCAATGACCAGCAGCAAGCCGATCAAGATCCGTGGACCAAGCCACTGTGCTGGGTGCAAAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS CAA 72 bp ACAGGTGGCGCTCTAAGCGAGTCCGGTCCACATCCTTaGGCAGTCGGTTCCTTCCTCTTGTGGTCACCAGTA +
Preference number: 6 (lower is better)
Translates to: TGGALSESGPHP*AVGSFLLWSPV
Trigger: TACTGGTGACCACAAGAGGAAGGAACCGACTGCCAAAGGATGTGGACCGGACTCGCTTAGAGCGCCACCTGT
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS TCA 72 bp TTTGGGGGACCCATGGTAGGTCCAATACTCAGACTCTaGAGCATAGTAGGGGTCTGGCGAGTAGGCTGGGCT +
Preference number: 6 (lower is better)
Translates to: FGGPMVGPILRL*SIVGVWRVGWA
Trigger: AGCCCAGCCTACTCGCCAGACCCCTACTATGCTTCAGAGTCTGAGTATTGGACCTACCATGGGTCCCCCAAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS CAA 90 bp TCTCTCCAGCTGGGATGTGAAAGTGCTTGGGAGCCTGGTAAGAGGTaGGCGTGGAGGACCTCACATCTAATTGGCTATGGTATGGGGAGC +
Preference number: 6 (lower is better)
Translates to: SLQLGCESAWEPGKR*AWRTSHLIGYGMGS
Trigger: GCTCCCCATACCATAGCCAATTAGATGTGAGGTCCTCCACGCCAACCTCTTACCAGGCTCCCAAGCACTTTCACATCCCAGCTGGAGAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS GCA 72 bp ATGACGCTACAGGTCTGGCATTTGAAACAGCTGACGTaGCACTGCTTGTCCAGTGCCAGAAGTGACTGGCCA +
Preference number: 6 (lower is better)
Translates to: MTLQVWHLKQLT*HCLSSARSDWP
Trigger: TGGCCAGTCACTTCTGGCACTGGACAAGCAGTGGCACGTCAGCTGTTTCAAATGCCAGACCTGTAGCGTCAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS CCA 72 bp TGGCCATGTTTAATCTCCTCTTTGCACCCAGCACAGTaGCTTGGTCCACGGATCTTGATCGGCTTGCTGCTG +
Preference number: 6 (lower is better)
Translates to: WPCLISSLHPAQ*LGPRILIGLLL
Trigger: CAGCAGCAAGCCGATCAAGATCCGTGGACCAAGCCACTGTGCTGGGTGCAAAGAGGAGATTAAACATGGCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS CCA 72 bp AGATGTTACTCTCTCCAGCTGGGATGTGAAAGTGCTTaGGAGCCTGGTAAGAGGTTGGCGTGGAGGACCTCA +
Preference number: 6 (lower is better)
Translates to: RCYSLQLGCESA*EPGKRLAWRTS
Trigger: TGAGGTCCTCCACGCCAACCTCTTACCAGGCTCCCAAGCACTTTCACATCCCAGCTGGAGAGAGTAACATCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS TCA 72 bp TGGTCCACGGATCTTGATCGGCTTGCTGCTGGTCATTaGCTGGGAGCACGTCTGACATACACATTCTTTCCC +
Preference number: 6 (lower is better)
Translates to: WSTDLDRLAAGH*LGARLTYTFFP
Trigger: GGGAAAGAATGTGTATGTCAGACGTGCTCCCAGTCAATGACCAGCAGCAAGCCGATCAAGATCCGTGGACCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS GCA 72 bp AGGATAGATCTTGTACTCTCGCATGCCCCAGTTGACTaGGTTCATGCTGTCGTAGTGGAAGAGGTCCGCACT +
Preference number: 6 (lower is better)
Translates to: RIDLVLSHAPVD*VHAVVVEEVRT
Trigger: AGTGCGGACCTCTTCCACTACGACAGCATGAACGCAGTCAACTGGGGCATGCGAGAGTACAAGATCTATCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS CAA 90 bp CTAAGCGAGTCCGGTCCACATCCTTTGGCAGTCGGTTCCTTCCTCTaGTGGTCACCAGTAGCAGCTCATAAGGATAGATCTTGTACTCTC +
Preference number: 6 (lower is better)
Translates to: LSESGPHPLAVGSFL*WSPVAAHKDRSCTL
Trigger: GAGAGTACAAGATCTATCCTTATGAGCTGCTACTGGTGACCACAAGAGGAAGGAACCGACTGCCAAAGGATGTGGACCGGACTCGCTTAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS TCA 72 bp CATAAGGATAGATCTTGTACTCTCGCATGCCCCAGTTaGCTGCGTTCATGCTGTCGTAGTGGAAGAGGTCCG +
Preference number: 6 (lower is better)
Translates to: HKDRSCTLACPS*LRSCCRSGRGP
Trigger: CGGACCTCTTCCACTACGACAGCATGAACGCAGTCAACTGGGGCATGCGAGAGTACAAGATCTATCCTTATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS GCA 72 bp CTACAGGTCTGGCATTTGAAACAGCTGACGTGCCACTaGTTGTCCAGTGCCAGAAGTGACTGGCCATGTTTA +
Preference number: 6 (lower is better)
Translates to: LQVWHLKQLTCH*LSSARSDWPCL
Trigger: TAAACATGGCCAGTCACTTCTGGCACTGGACAAGCAGTGGCACGTCAGCTGTTTCAAATGCCAGACCTGTAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS CAA 72 bp TCCGGTCCACATCCTTTGGCAGTCGGTTCCTTCCTCTaGTGGTCACCAGTAGCAGCTCATAAGGATAGATCT +
Preference number: 6 (lower is better)
Translates to: SGPHPLAVGSFL*WSPVAAHKDRS
Trigger: AGATCTATCCTTATGAGCTGCTACTGGTGACCACAAGAGGAAGGAACCGACTGCCAAAGGATGTGGACCGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS CCA 72 bp GATGCCAAACTGGGAGTGGTAGTCAGACTCGCAGTATaGAACACCGTCTTTGCTAATGTATTCCCCAGTGAG +
Preference number: 6 (lower is better)
Translates to: DAKLGVVVRLAV*NTVFANVFPSE
Trigger: CTCACTGGGGAATACATTAGCAAAGACGGTGTTCCATACTGCGAGTCTGACTACCACTCCCAGTTTGGCATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS CCA 72 bp GGTCCACATCCTTTGGCAGTCGGTTCCTTCCTCTTGTaGTCACCAGTAGCAGCTCATAAGGATAGATCTTGT +
Preference number: 6 (lower is better)
Translates to: GPHPLAVGSFLL*SPVAAHKDRSC
Trigger: ACAAGATCTATCCTTATGAGCTGCTACTGGTGACCACAAGAGGAAGGAACCGACTGCCAAAGGATGTGGACC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS CAA 72 bp CTATACTTGGAGGCCTGGCTGATGTCTTCACTTGTTTaGCTCTTGGTTGCTGTGGACAAATCACCATGCCGT +
Preference number: 6 (lower is better)
Translates to: LYLEAWLMSSLV*LLVAVDKSPCR
Trigger: ACGGCATGGTGATTTGTCCACAGCAACCAAGAGCAAAACAAGTGAAGACATCAGCCAGGCCTCCAAGTATAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3
CDS GCA 72 bp TTGCACCTCGTAGATGGACTTAACCTTGGGGAGAGCTaGCAGGTCTTTGTAATTAAGGATCTCATTATCCAC +
Preference number: 6 (lower is better)
Translates to: LHLVDGLNLGES*QVFVIKDLIIH
Trigger: GTGGATAATGAGATCCTTAATTACAAAGACCTGGCAGCTCTCCCCAAGGTTAAGTCCATCTACGAGGTGCAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049378.15
ENSMUST00000166783.3