RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ABCE1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000058355

Ensembl transcript IDs: ENSMUST00000080536.8

Found 33 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GTCTCAAATATGGTCCTCATGAGCGTGCAGCTTGTACTTACTGACTaGACCATCTCCCCAGCCCAAGCCTATAGTTCTGCAGGAAGCAAA +
Preference number: 1 (lower is better)
Translates to: VSNMVLMSVQLVLTD*TISPAQAYSSAGSK
Trigger: TTTGCTTCCTGCAGAACTATAGGCTTGGGCTGGGGAGATGGTTCAGTCAGTAAGTACAAGCTGCACGCTCATGAGGACCATATTTGAGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000080536.8
3UTR CCA 90 bp CACTGCAGCAATGGACACTTTGTATTGCTATTTCCCTGCACTCACTaGAGAAGTTGTTTTAGGTTGTCCTTGGTTGCTCAACAGAAGACT +
Preference number: 1 (lower is better)
Translates to: HCSNGHFVLLFPCTH*RSCFRLSLVAQQKT
Trigger: AGTCTTCTGTTGAGCAACCAAGGACAACCTAAAACAACTTCTCCAGTGAGTGCAGGGAAATAGCAATACAAAGTGTCCATTGCTGCAGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000080536.8
3UTR TCA 90 bp TGGCATATTAGTAAAATGTGGATAATGTCCTTTGTATCCAACAAATaGGTATGCACTGCAGCAATGGACACTTTGTATTGCTATTTCCCT +
Preference number: 1 (lower is better)
Translates to: WHISKMWIMSFVSNK*VCTAAMDTLYCYFP
Trigger: AGGGAAATAGCAATACAAAGTGTCCATTGCTGCAGTGCATACTCATTTGTTGGATACAAAGGACATTATCCACATTTTACTAATATGCCA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000080536.8
3UTR-3UTR CCA 90 bp GGCCAGTGGGCTTTAGGGATCTGCTGGACTTCACTTCTACTAAAGTCTCAAATAGCAGACACTGTTCCTTaGAAGCACACACTGAACACA +
Preference number: 2 (lower is better)
Translates to: GQWALGICWTSLLLKSQIADTVP*KHTLNT
Trigger: TGTGTTCAGTGTGTGCTTCCAAGGAACAGTGTCTGC...TATTTGAGACTTTAGTAGAAGTGAAGTCCAGCAGATCCCTAAAGCCCACTGGCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080536.8
3UTR-3UTR CCA 90 bp GGCCAGTGGGCTTTAGGGATCTGCTGGACTTCACTTCTACTAAAGTCTCAAATAATCCCAGTAAGTAAATaGCTTATAAGTTCAGACTCA +
Preference number: 2 (lower is better)
Translates to: GQWALGICWTSLLLKSQIIPVSK*LISSDS
Trigger: TGAGTCTGAACTTATAAGCCATTTACTTACTGGGAT...TATTTGAGACTTTAGTAGAAGTGAAGTCCAGCAGATCCCTAAAGCCCACTGGCC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080536.8
3UTR-3UTR CCA 90 bp TGTATCGGTTGGGTTTTGTGTGTGTGTGTTGGTGCCAGAGTGTCTTCCTCAATTAAACAATGCATAAGTTaGTCATCAACATCTTCCAAC +
Preference number: 2 (lower is better)
Translates to: CIGWVLCVCVGARVSSSIKQCIS*SSTSSN
Trigger: GTTGGAAGATGTTGATGACCAACTTATGCATTGTTT...AATTGAGGAAGACACTCTGGCACCAACACACACACACAAAACCCAACCGATACA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000080536.8
3UTR CAA 90 bp TTTGTATTGCTATTTCCCTGCACTCACTGGAGAAGTTGTTTTAGGTaGTCCTTGGTTGCTCAACAGAAGACTCTGGAGTCTAAATATGTA +
Preference number: 2 (lower is better)
Translates to: FVLLFPCTHWRSCFR*SLVAQQKTLESKYV
Trigger: TACATATTTAGACTCCAGAGTCTTCTGTTGAGCAACCAAGGACAACCTAAAACAACTTCTCCAGTGAGTGCAGGGAAATAGCAATACAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000080536.8
3UTR-3UTR TCA 90 bp AGTTGTTTTAGGTTGTCCTTGGTTGCTCAACAGAAGACTCTGGAGTCTAAATATCTTGGAAGCACACACTaGACACAAGTAGCAAATATA +
Preference number: 2 (lower is better)
Translates to: SCFRLSLVAQQKTLESKYLGSTH*TQVANI
Trigger: TATATTTGCTACTTGTGTTCAGTGTGTGCTTCCAAG...ATATTTAGACTCCAGAGTCTTCTGTTGAGCAACCAAGGACAACCTAAAACAACT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000080536.8
3UTR-3UTR GCA 90 bp AGTTGTTTTAGGTTGTCCTTGGTTGCTCAACAGAAGACTCTGGAGTCTAAATATAATAGTCTTCAGAAATaGCTCCTCCCTAATCTTGAT +
Preference number: 2 (lower is better)
Translates to: SCFRLSLVAQQKTLESKYNSLQK*LLPNLD
Trigger: ATCAAGATTAGGGAGGAGGCATTTCTGAAGACTATT...ATATTTAGACTCCAGAGTCTTCTGTTGAGCAACCAAGGACAACCTAAAACAACT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000080536.8
3UTR GCA 72 bp ATATGTAGGGCTGGGGATGTAGCTCAGTTGTTAGAGTaGTTGCCTAGCACACACAAAGCCCTGGGTTTGATC +
Preference number: 3 (lower is better)
Translates to: ICRAGDVAQLLE*LPSTHKALGLI
Trigger: GATCAAACCCAGGGCTTTGTGTGTGCTAGGCAAGCACTCTAACAACTGAGCTACATCCCCAGCCCTACATAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000080536.8
3UTR CCA 72 bp AATGTGCTCATAGACTGTGTTAGGCTGGCAGGCCAGTaGGCTTTAGGGATCTGCTGGACTTCACTTCTACTA +
Preference number: 3 (lower is better)
Translates to: NVLIDCVRLAGQ*ALGICWTSLLL
Trigger: TAGTAGAAGTGAAGTCCAGCAGATCCCTAAAGCCCACTGGCCTGCCAGCCTAACACAGTCTATGAGCACATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080536.8
3UTR GCA 72 bp TGTGTTAGGCTGGCAGGCCAGTGGGCTTTAGGGATCTaGTGGACTTCACTTCTACTAAAGTCTCAAATATGG +
Preference number: 3 (lower is better)
Translates to: CVRLAGQWALGI*WTSLLLKSQIW
Trigger: CCATATTTGAGACTTTAGTAGAAGTGAAGTCCAGCAGATCCCTAAAGCCCACTGGCCTGCCAGCCTAACACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080536.8
3UTR GCA 72 bp AGACTGTATCGGTTGGGTTTTGTGTGTGTGTGTTGGTaGCAGAGTGTCTTCCTCAATTACTGTCCACTTAGC +
Preference number: 3 (lower is better)
Translates to: RLYRLGFVCVCW*QSVFLNYCPLS
Trigger: GCTAAGTGGACAGTAATTGAGGAAGACACTCTGGCACCAACACACACACACAAAACCCAACCGATACAGTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000080536.8
3UTR CCA 72 bp TGCTTATGTATCAGACTTTGGCAGCAAGTCTGTGACTaGCTTTTTAGAAGGGGGCAGTTCTGTTATACTGGT +
Preference number: 3 (lower is better)
Translates to: CLCIRLWQQVCD*LFRRGQFCYTG
Trigger: ACCAGTATAACAGAACTGCCCCCTTCTAAAAAGCCAGTCACAGACTTGCTGCCAAAGTCTGATACATAAGCA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000080536.8
3UTR CCA 72 bp AGATACTTAGGCACCAACTATAAAGACTGTATCGGTTaGGTTTTGTGTGTGTGTGTTGGTGCCAGAGTGTCT +
Preference number: 3 (lower is better)
Translates to: RYLGTNYKDCIG*VLCVCVGARVS
Trigger: AGACACTCTGGCACCAACACACACACACAAAACCCAACCGATACAGTCTTTATAGTTGGTGCCTAAGTATCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000080536.8
3UTR CCA 72 bp CAAGGTTGTCCTTGGATACCTAATTTGAGGCCAGCTTaGGCTATAGGACGACAAGCTGTCTCAAAACAAAAT +
Preference number: 3 (lower is better)
Translates to: QGCPWIPNLRPA*AIGRQAVSKQN
Trigger: ATTTTGTTTTGAGACAGCTTGTCGTCCTATAGCCCAAGCTGGCCTCAAATTAGGTATCCAAGGACAACCTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000080536.8
3UTR CCA 72 bp CCTGCACTCACTGGAGAAGTTGTTTTAGGTTGTCCTTaGTTGCTCAACAGAAGACTCTGGAGTCTAAATATG +
Preference number: 3 (lower is better)
Translates to: PALTGEVVLGCP*LLNRRLWSLNM
Trigger: CATATTTAGACTCCAGAGTCTTCTGTTGAGCAACCAAGGACAACCTAAAACAACTTCTCCAGTGAGTGCAGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000080536.8
3UTR CCA 72 bp CTTCCAACAATGGTGTTTGTAGCAGACACTGTTCCTTaGAAGCACACACTGAACACAAGTAGCAAATATAGC +
Preference number: 3 (lower is better)
Translates to: LPTMVFVADTVP*KHTLNTSSKYS
Trigger: GCTATATTTGCTACTTGTGTTCAGTGTGTGCTTCCAAGGAACAGTGTCTGCTACAAACACCATTGTTGGAAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080536.8
3UTR CCA 72 bp CCTTTGTATCCAACAAATGAGTATGCACTGCAGCAATaGACACTTTGTATTGCTATTTCCCTGCACTCACTG +
Preference number: 3 (lower is better)
Translates to: PLYPTNEYALQQ*TLCIAISLHSL
Trigger: CAGTGAGTGCAGGGAAATAGCAATACAAAGTGTCCATTGCTGCAGTGCATACTCATTTGTTGGATACAAAGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080536.8
3UTR TCA 72 bp ACTTCACTTCTACTAAAGTCTCAAATATGGTCCTCATaGGCGTGCAGCTTGTACTTACTGACTGAACCATCT +
Preference number: 3 (lower is better)
Translates to: TSLLLKSQIWSS*ACSLYLLTEPS
Trigger: AGATGGTTCAGTCAGTAAGTACAAGCTGCACGCTCATGAGGACCATATTTGAGACTTTAGTAGAAGTGAAGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080536.8
3UTR GCA 72 bp GATAATGTCCTTTGTATCCAACAAATGAGTATGCACTaGAGCAATGGACACTTTGTATTGCTATTTCCCTGC +
Preference number: 3 (lower is better)
Translates to: DNVLCIQQMSMH*SNGHFVLLFPC
Trigger: GCAGGGAAATAGCAATACAAAGTGTCCATTGCTGCAGTGCATACTCATTTGTTGGATACAAAGGACATTATC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080536.8
CDS-3UTR GCA 90 bp GAACCATCTCCCCAGCCCAAGCCTATAGTTCTGCAGGAAGCAAATAGTCTTCAGGCCCACTGTCCCCTTTaGAGCCTTGGGAATTTGGTC +
Preference number: 4 (lower is better)
Translates to: EPSPQPKPIVLQEANSLQAHCPL*SLGNLV
Trigger: GACCAAATTCCCAAGGCTGCAAAGGGGACAGTGGGC...CTGAAGACTATTTGCTTCCTGCAGAACTATAGGCTTGGGCTGGGGAGATGGTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000080536.8
CDS-3UTR TCA 90 bp GAACCATCTCCCCAGCCCAAGCCTATAGTTCTGCAGGAAGCAAATAGTCTTCAGAGTTGCTTGGCAAATTaGCAATTGATAAGGCGCCAA +
Preference number: 4 (lower is better)
Translates to: EPSPQPKPIVLQEANSLQSCLAN*QLIRRQ
Trigger: TTGGCGCCTTATCAATTGTCAATTTGCCAAGCAACT...CTGAAGACTATTTGCTTCCTGCAGAACTATAGGCTTGGGCTGGGGAGATGGTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000080536.8
CDS-3UTR TCA 90 bp TTTGAGGCCAGCTTGGGCTATAGGACGACAAGCTGTCTCAAAACAAAATTAAAAGCAACCTGTGAAGCTTaGAGGCATTGGCACAGTAGC +
Preference number: 4 (lower is better)
Translates to: FEASLGYRTTSCLKTKLKATCEA*RHWHSS
Trigger: GCTACTGTGCCAATGCCTTCAAGCTTCACAGGTTGC...TTTTAATTTTGTTTTGAGACAGCTTGTCGTCCTATAGCCCAAGCTGGCCTCAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000080536.8
3UTR CAA 72 bp TTAGGCACCAACTATAAAGACTGTATCGGTTGGGTTTaGTGTGTGTGTGTTGGTGCCAGAGTGTCTTCCTCA +
Preference number: 4 (lower is better)
Translates to: LGTNYKDCIGWV*CVCVGARVSSS
Trigger: TGAGGAAGACACTCTGGCACCAACACACACACACAAAACCCAACCGATACAGTCTTTATAGTTGGTGCCTAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080536.8
3UTR CAA 72 bp CTATTTCCCTGCACTCACTGGAGAAGTTGTTTTAGGTaGTCCTTGGTTGCTCAACAGAAGACTCTGGAGTCT +
Preference number: 4 (lower is better)
Translates to: LFPCTHWRSCFR*SLVAQQKTLES
Trigger: AGACTCCAGAGTCTTCTGTTGAGCAACCAAGGACAACCTAAAACAACTTCTCCAGTGAGTGCAGGGAAATAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000080536.8
3UTR CAA 72 bp CCCTGCACTCACTGGAGAAGTTGTTTTAGGTTGTCCTaGGTTGCTCAACAGAAGACTCTGGAGTCTAAATAT +
Preference number: 4 (lower is better)
Translates to: PCTHWRSCFRLS*VAQQKTLESKY
Trigger: ATATTTAGACTCCAGAGTCTTCTGTTGAGCAACCAAGGACAACCTAAAACAACTTCTCCAGTGAGTGCAGGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000080536.8
CDS-3UTR TCA 90 bp GGTCATCAACATCTTCCAACAATGGTGTTTGTAGCAGACACTGTTCCTTGGAAGGTACCTCTTGGTCAATaGTGTTTTCAATCTGTAGGG +
Preference number: 4 (lower is better)
Translates to: GHQHLPTMVFVADTVPWKVPLGQ*CFQSVG
Trigger: CCCTACAGATTGAAAACATCATTGACCAAGAGGTAC...CTTCCAAGGAACAGTGTCTGCTACAAACACCATTGTTGGAAGATGTTGATGACC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000080536.8
CDS-3UTR GCA 90 bp GGCCAGTGGGCTTTAGGGATCTGCTGGACTTCACTTCTACTAAAGTCTCAAATAACAAAAATTTGTTCATaGCAGCCAAAAGAGTCTGAG +
Preference number: 4 (lower is better)
Translates to: GQWALGICWTSLLLKSQITKICS*QPKESE
Trigger: CTCAGACTCTTTTGGCTGGCATGAACAAATTTTTGT...TATTTGAGACTTTAGTAGAAGTGAAGTCCAGCAGATCCCTAAAGCCCACTGGCC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000080536.8
3UTR CAA 72 bp CAAATGAGTATGCACTGCAGCAATGGACACTTTGTATaGCTATTTCCCTGCACTCACTGGAGAAGTTGTTTT +
Preference number: 4 (lower is better)
Translates to: QMSMHCSNGHFV*LFPCTHWRSCF
Trigger: AAAACAACTTCTCCAGTGAGTGCAGGGAAATAGCAATACAAAGTGTCCATTGCTGCAGTGCATACTCATTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080536.8
3UTR CAA 72 bp TCCAAGATTTTAAAGATGGGCAACACCAGGAAGCATTaGGTACATGAATATAATATACAACTGAAAATCTCC +
Preference number: 4 (lower is better)
Translates to: SKILKMGNTRKH*VHEYNIQLKIS
Trigger: GGAGATTTTCAGTTGTATATTATATTCATGTACCAAATGCTTCCTGGTGTTGCCCATCTTTAAAATCTTGGA
35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000080536.8
CDS-3UTR CAA 90 bp GGCCAGTGGGCTTTAGGGATCTGCTGGACTTCACTTCTACTAAAGTCTCAAATAAGCCCACTGTCCCCTTaGCAGCCTTGGGAATTTGGT +
Preference number: 5 (lower is better)
Translates to: GQWALGICWTSLLLKSQISPLSP*QPWEFG
Trigger: ACCAAATTCCCAAGGCTGCAAAGGGGACAGTGGGCT...TATTTGAGACTTTAGTAGAAGTGAAGTCCAGCAGATCCCTAAAGCCCACTGGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000080536.8
CDS-3UTR CAA 90 bp GGTCATCAACATCTTCCAACAATGGTGTTTGTAGCAGACACTGTTCCTTGGAAGACAGGGCAACTCTTTTaGCACTCCTGTCGACATTTC +
Preference number: 5 (lower is better)
Translates to: GHQHLPTMVFVADTVPWKTGQLF*HSCRHF
Trigger: GAAATGTCGACAGGAGTGCAAAAAGAGTTGCCCTGT...CTTCCAAGGAACAGTGTCTGCTACAAACACCATTGTTGGAAGATGTTGATGACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000080536.8