RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ABCD1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000031378

Ensembl transcript IDs: ENSMUST00000002084.14, ENSMUST00000114461.3

Found 180 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp ATATCTACCTGTCCCAGAGTGGGGTCTTCAGGGAATGCAGGTAATTaGCTAGGAGGCTTGGGAGGGGTAAGGCATGCAGGGCAATGGGGG +
Preference number: 1 (lower is better)
Translates to: ISTCPRVGSSGNAGN*LGGLGGVRHAGQWG
Trigger: CCCCCATTGCCCTGCATGCCTTACCCCTCCCAAGCCTCCTAGCCAATTACCTGCATTCCCTGAAGACCCCACTCTGGGACAGGTAGATAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000002084.14
3UTR TCA 90 bp CTAGCAAAGCTAAGTGAGCCAAGGGCTAGGGTTTACAGATGCAGGTaGCCAGATAATCTGGGAAGTGTACCTTGTCCCCAGCTACTTGGC +
Preference number: 1 (lower is better)
Translates to: LAKLSEPRARVYRCR*PDNLGSVPCPQLLG
Trigger: GCCAAGTAGCTGGGGACAAGGTACACTTCCCAGATTATCTGGTCACCTGCATCTGTAAACCCTAGCCCTTGGCTCACTTAGCTTTGCTAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114461.3
3UTR CCA 90 bp TTGGTTTCAAGTACCCAGCCCAGAGTTCAGGGAAGCCAGGTGGGATaGATGAATCATCAGACTAGGAGCACTTGGGTAACCCTTGGACAA +
Preference number: 1 (lower is better)
Translates to: LVSSTQPRVQGSQVG*MNHQTRSTWVTLGQ
Trigger: TTGTCCAAGGGTTACCCAAGTGCTCCTAGTCTGATGATTCATCCATCCCACCTGGCTTCCCTGAACTCTGGGCTGGGTACTTGAAACCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114461.3
3UTR TCA 90 bp GCTGGTCACACAAGGGGATGGCAACAAAGGGATGGATCAAAACAATaGCAAGGATTTGGGTTTCGGCAGGGATGTAACCCACAACTACCA +
Preference number: 1 (lower is better)
Translates to: AGHTRGWQQRDGSKQ*QGFGFRQGCNPQLP
Trigger: TGGTAGTTGTGGGTTACATCCCTGCCGAAACCCAAATCCTTGTCATTGTTTTGATCCATCCCTTTGTTGCCATCCCCTTGTGTGACCAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000002084.14
3UTR CCA 90 bp TTCAGGTCTCATGGTCAGAGATATGTTGGTCTTTCAGCTTCACCTTaGCCTATCTTCCACGTGGCTGGGGACAATGTTGCTGCTAGCAAA +
Preference number: 1 (lower is better)
Translates to: FRSHGQRYVGLSASP*PIFHVAGDNVAASK
Trigger: TTTGCTAGCAGCAACATTGTCCCCAGCCACGTGGAAGATAGGCCAAGGTGAAGCTGAAAGACCAACATATCTCTGACCATGAGACCTGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114461.3
3UTR CCA 90 bp TCAGCACTTACACTATTGCTTCAGGTCTCATGGTCAGAGATATGTTaGTCTTTCAGCTTCACCTTGGCCTATCTTCCACGTGGCTGGGGA +
Preference number: 1 (lower is better)
Translates to: SALTLLLQVSWSEIC*SFSFTLAYLPRGWG
Trigger: TCCCCAGCCACGTGGAAGATAGGCCAAGGTGAAGCTGAAAGACCAACATATCTCTGACCATGAGACCTGAAGCAATAGTGTAAGTGCTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114461.3
3UTR CCA 90 bp TTCCCAAGTGCTGGGATTAAAGGTATGTGTCACAACAGTAAGCAGTaGATACTTCTTAAGGTCACTCACTCCACTCTCCAATTTATCTTT +
Preference number: 1 (lower is better)
Translates to: FPSAGIKGMCHNSKQ*ILLKVTHSTLQFIF
Trigger: AAAGATAAATTGGAGAGTGGAGTGAGTGACCTTAAGAAGTATCCACTGCTTACTGTTGTGACACATACCTTTAATCCCAGCACTTGGGAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114461.3
3UTR-3UTR GCA 90 bp GAGGAGTGGGAGGGCCAGGGCTATATTCTCTTCATGGCTCAGGAGGAACTCTGTGGGAGGGGTAAGGCATaGAGGGCAATGGGGGAGGGG +
Preference number: 2 (lower is better)
Translates to: EEWEGQGYILFMAQEELCGRGKA*RAMGEG
Trigger: CCCCTCCCCCATTGCCCTGCATGCCTTACCCCTCCC...ACAGAGTTCCTCCTGAGCCATGAAGAGAATATAGCCCTGGCCCTCCCACTCCTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000002084.14
3UTR-3UTR CCA 90 bp GGAAGGGCACACTTTGGGCCCTGTCTAATCCTGGGCCCCATTAGGCTGTTTTCAAGGCATGCAGGGCAATaGGGGAGGGGAGGAGCTTCC +
Preference number: 2 (lower is better)
Translates to: GRAHFGPCLILGPIRLFSRHAGQ*GRGGAS
Trigger: GGAAGCTCCTCCCCTCCCCCATTGCCCTGCATGCCT...TGAAAACAGCCTAATGGGGCCCAGGATTAGACAGGGCCCAAAGTGTGCCCTTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000002084.14
3UTR CAA 90 bp TATAGGCTGGTGAAGGGCCAGGTTTGGCACCAGAGACTGGGTAGATaGAAGGGACCACCCAGTCACCTCCTGTGCTGGCAGGGTACTCAT +
Preference number: 2 (lower is better)
Translates to: YRLVKGQVWHQRLGR*KGPPSHLLCWQGTH
Trigger: ATGAGTACCCTGCCAGCACAGGAGGTGACTGGGTGGTCCCTTCAATCTACCCAGTCTCTGGTGCCAAACCTGGCCCTTCACCAGCCTATA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002084.14
3UTR-3UTR GCA 90 bp TGGGTAACCATGGGGAAGGGCACACTTTGGGCCCTGTCTAATCCTGGGCCCCATCACAACTACCAGGGTTaGCACACATTCTGGCTGCTG +
Preference number: 2 (lower is better)
Translates to: WVTMGKGTLWALSNPGPHHNYQG*HTFWLL
Trigger: CAGCAGCCAGAATGTGTGGCAACCCTGGTAGTTGTG...ATGGGGCCCAGGATTAGACAGGGCCCAAAGTGTGCCCTTCCCCATGGTTACCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000002084.14
3UTR-3UTR CCA 90 bp GAAGGGACCACCCAGTCACCTCCTGTGCTGGCAGGGTACTCATGTTGGCAATTTGGGAATGCAGGTAATTaGCTAGGAGGCTTGGGAGGG +
Preference number: 2 (lower is better)
Translates to: EGTTQSPPVLAGYSCWQFGNAGN*LGGLGG
Trigger: CCCTCCCAAGCCTCCTAGCCAATTACCTGCATTCCC...AAATTGCCAACATGAGTACCCTGCCAGCACAGGAGGTGACTGGGTGGTCCCTTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002084.14
3UTR-3UTR CCA 90 bp GCACACAATGGCAGTAGGGTGTGTGTGTGGGGGCGTCTCCCTCTTGGTGAGGGCGCTATATTCTCTTCATaGCTCAGGAGGAACTCTGTC +
Preference number: 2 (lower is better)
Translates to: AHNGSRVCVWGRLPLGEGAIFSS*LRRNSV
Trigger: GACAGAGTTCCTCCTGAGCCATGAAGAGAATATAGC...GCCCTCACCAAGAGGGAGACGCCCCCACACACACACCCTACTGCCATTGTGTGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000002084.14
3UTR-3UTR TCA 90 bp GGTATAGAGTCAGGACTGGGGACTTCCAAACCCTCCATCCCTCCCCAGGGAAAAGAGCAGAACCCAGAGTaGAGGTGGAATGCAGTGTGT +
Preference number: 2 (lower is better)
Translates to: GIESGLGTSKPSIPPQGKEQNPE*RWNAVC
Trigger: ACACACTGCATTCCACCTTCACTCTGGGTTCTGCTC...TTTTCCCTGGGGAGGGATGGAGGGTTTGGAAGTCCCCAGTCCTGACTCTATACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000002084.14
3UTR-3UTR GCA 90 bp TGGAGGAGTGGGAGGGCCAGGGCTATATTCTCTTCATGGCTCAGGAGGAACTCTAAGGGAGGCAGCTCCTaGTTACTTCCTATGGCTCAG +
Preference number: 2 (lower is better)
Translates to: WRSGRARAIFSSWLRRNSKGGSS*LLPMAQ
Trigger: CTGAGCCATAGGAAGTAAGCAGGAGCTGCCTCCCTT...AGAGTTCCTCCTGAGCCATGAAGAGAATATAGCCCTGGCCCTCCCACTCCTCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002084.14
3UTR-3UTR CCA 90 bp CCTTCTTGGGTAACCATGGGGAAGGGCACACTTTGGGCCCTGTCTAATCCTGGGCCTGCTTACTTCCTATaGCTCAGCCATACTGGTATA +
Preference number: 2 (lower is better)
Translates to: PSWVTMGKGTLWALSNPGPAYFL*LSHTGI
Trigger: TATACCAGTATGGCTGAGCCATAGGAAGTAAGCAGG...CCCAGGATTAGACAGGGCCCAAAGTGTGCCCTTCCCCATGGTTACCCAAGAAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002084.14
3UTR CAA 90 bp TTTCAGCTTCACCTTGGCCTATCTTCCACGTGGCTGGGGACAATGTaGCTGCTAGCAAAGCTAAGTGAGCCAAGGGCTAGGGTTTACAGA +
Preference number: 2 (lower is better)
Translates to: FQLHLGLSSTWLGTM*LLAKLSEPRARVYR
Trigger: TCTGTAAACCCTAGCCCTTGGCTCACTTAGCTTTGCTAGCAGCAACATTGTCCCCAGCCACGTGGAAGATAGGCCAAGGTGAAGCTGAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114461.3
3UTR-3UTR CCA 90 bp CCTTCTTGGGTAACCATGGGGAAGGGCACACTTTGGGCCCTGTCTAATCCTGGGATGGCAACAAAGGGATaGATCAAAACAATGACAAGG +
Preference number: 2 (lower is better)
Translates to: PSWVTMGKGTLWALSNPGMATKG*IKTMTR
Trigger: CCTTGTCATTGTTTTGATCCATCCCTTTGTTGCCAT...CCCAGGATTAGACAGGGCCCAAAGTGTGCCCTTCCCCATGGTTACCCAAGAAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000002084.14
3UTR CAA 90 bp ATCAGCACTTACACTATTGCTTCAGGTCTCATGGTCAGAGATATGTaGGTCTTTCAGCTTCACCTTGGCCTATCTTCCACGTGGCTGGGG +
Preference number: 2 (lower is better)
Translates to: ISTYTIASGLMVRDM*VFQLHLGLSSTWLG
Trigger: CCCCAGCCACGTGGAAGATAGGCCAAGGTGAAGCTGAAAGACCAACATATCTCTGACCATGAGACCTGAAGCAATAGTGTAAGTGCTGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114461.3
3UTR-3UTR CCA 90 bp ACTCCACTCTCCAATTTATCTTTGGTTTCAAGTACCCAGCCCAGAGTTCAGGGACAGACTAGGAGCACTTaGGTAACCCTTGGACAACCC +
Preference number: 2 (lower is better)
Translates to: TPLSNLSLVSSTQPRVQGQTRST*VTLGQP
Trigger: GGGTTGTCCAAGGGTTACCCAAGTGCTCCTAGTCTG...TCCCTGAACTCTGGGCTGGGTACTTGAAACCAAAGATAAATTGGAGAGTGGAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114461.3
3UTR-3UTR CCA 90 bp AAACTGGCCTCAAACTCACAGAGATTTACCCACCTCTGCTTCCCAAGTGCTGGGTGGTCAGAGATATGTTaGTCTTTCAGCTTCACCTTG +
Preference number: 2 (lower is better)
Translates to: KLASNSQRFTHLCFPSAGWSEIC*SFSFTL
Trigger: CAAGGTGAAGCTGAAAGACCAACATATCTCTGACCA...CCCAGCACTTGGGAAGCAGAGGTGGGTAAATCTCTGTGAGTTTGAGGCCAGTTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114461.3
3UTR-3UTR TCA 90 bp ACTATGCAGACCAAACTGGCCTCAAACTCACAGAGATTTACCCACCTCTGCTTCGTTTACAGATGCAGGTaGCCAGATAATCTGGGAAGT +
Preference number: 2 (lower is better)
Translates to: TMQTKLASNSQRFTHLCFVYRCR*PDNLGS
Trigger: ACTTCCCAGATTATCTGGTCACCTGCATCTGTAAAC...GAAGCAGAGGTGGGTAAATCTCTGTGAGTTTGAGGCCAGTTTGGTCTGCATAGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114461.3
3UTR-3UTR CCA 90 bp AGCCCTGGCTGTCTTGGAACTTACTATGCAGACCAAACTGGCCTCAAACTCACACACAACAGTAAGCAGTaGATACTTCTTAAGGTCACT +
Preference number: 2 (lower is better)
Translates to: SPGCLGTYYADQTGLKLTHNSKQ*ILLKVT
Trigger: AGTGACCTTAAGAAGTATCCACTGCTTACTGTTGTG...TGTGAGTTTGAGGCCAGTTTGGTCTGCATAGTAAGTTCCAAGACAGCCAGGGCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114461.3
3UTR CCA 72 bp CCAGGAAAGGCACACAATGGCAGTAGGGTGTGTGTGTaGGGGCGTCTCCCTCTTGGTGAGGGCTGGTTTAGC +
Preference number: 3 (lower is better)
Translates to: PGKAHNGSRVCV*GRLPLGEGWFS
Trigger: GCTAAACCAGCCCTCACCAAGAGGGAGACGCCCCCACACACACACCCTACTGCCATTGTGTGCCTTTCCTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002084.14
3UTR CCA 72 bp TGTCCCAGAGTGGGGTCTTCAGGGAATGCAGGTAATTaGCTAGGAGGCTTGGGAGGGGTAAGGCATGCAGGG +
Preference number: 3 (lower is better)
Translates to: CPRVGSSGNAGN*LGGLGGVRHAG
Trigger: CCCTGCATGCCTTACCCCTCCCAAGCCTCCTAGCCAATTACCTGCATTCCCTGAAGACCCCACTCTGGGACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000002084.14
3UTR CCA 72 bp GGCAACTGGCAGTATAGGCTGGTGAAGGGCCAGGTTTaGCACCAGAGACTGGGTAGATTGAAGGGACCACCC +
Preference number: 3 (lower is better)
Translates to: GNWQYRLVKGQV*HQRLGRLKGPP
Trigger: GGGTGGTCCCTTCAATCTACCCAGTCTCTGGTGCCAAACCTGGCCCTTCACCAGCCTATACTGCCAGTTGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002084.14
3UTR-3UTR CAA 90 bp TATCCTGTGGGACAGGGGCATTGGCTGGTCACACAAGGGGATGGCAACAAAGGGAATTGGCTAGGAGGCTaGGGAGGGGTAAGGCATGCA +
Preference number: 3 (lower is better)
Translates to: YPVGQGHWLVTQGDGNKGNWLGG*GGVRHA
Trigger: TGCATGCCTTACCCCTCCCAAGCCTCCTAGCCAATT...CCCTTTGTTGCCATCCCCTTGTGTGACCAGCCAATGCCCCTGTCCCACAGGATA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000002084.14
3UTR-3UTR CAA 90 bp GGAGTGGGAGGGCCAGGGCTATATTCTCTTCATGGCTCAGGAGGAACTCTGTCCCCACAACTACCAGGGTaGCCACACATTCTGGCTGCT +
Preference number: 3 (lower is better)
Translates to: GVGGPGLYSLHGSGGTLSPQLPG*PHILAA
Trigger: AGCAGCCAGAATGTGTGGCAACCCTGGTAGTTGTGG...GGACAGAGTTCCTCCTGAGCCATGAAGAGAATATAGCCCTGGCCCTCCCACTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002084.14
3UTR GCA 72 bp GGTTTCGGCAGGGATGTAACCCACAACTACCAGGGTTaGCACACATTCTGGCTGCTGGCAGTAAGGGAGGCA +
Preference number: 3 (lower is better)
Translates to: GFGRDVTHNYQG*HTFWLLAVREA
Trigger: TGCCTCCCTTACTGCCAGCAGCCAGAATGTGTGGCAACCCTGGTAGTTGTGGGTTACATCCCTGCCGAAACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002084.14
3UTR CCA 72 bp CTGGCAGTAAGGGAGGCAGCTCCTGCTTACTTCCTATaGCTCAGCCATACTGGTATAGAGTCAGGACTGGGG +
Preference number: 3 (lower is better)
Translates to: LAVREAAPAYFL*LSHTGIESGLG
Trigger: CCCCAGTCCTGACTCTATACCAGTATGGCTGAGCCATAGGAAGTAAGCAGGAGCTGCCTCCCTTACTGCCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002084.14
3UTR CCA 72 bp ATTCTCTTCATGGCTCAGGAGGAACTCTGTCCTTCTTaGGTAACCATGGGGAAGGGCACACTTTGGGCCCTG +
Preference number: 3 (lower is better)
Translates to: ILFMAQEELCPS*VTMGKGTLWAL
Trigger: CAGGGCCCAAAGTGTGCCCTTCCCCATGGTTACCCAAGAAGGACAGAGTTCCTCCTGAGCCATGAAGAGAAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002084.14
3UTR CCA 72 bp AGTACCCAGCCCAGAGTTCAGGGAAGCCAGGTGGGATaGATGAATCATCAGACTAGGAGCACTTGGGTAACC +
Preference number: 3 (lower is better)
Translates to: STQPRVQGSQVG*MNHQTRSTWVT
Trigger: GGTTACCCAAGTGCTCCTAGTCTGATGATTCATCCATCCCACCTGGCTTCCCTGAACTCTGGGCTGGGTACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114461.3
3UTR-3UTR CAA 90 bp CACAGAGATTTACCCACCTCTGCTTCCCAAGTGCTGGGATTAAAGGTATGTGTCCTTGTCCCCAGCTACTaGGCTCAGATTGGTCAGCAC +
Preference number: 3 (lower is better)
Translates to: HRDLPTSASQVLGLKVCVLVPSY*AQIGQH
Trigger: GTGCTGACCAATCTGAGCCAAGTAGCTGGGGACAAG...GACACATACCTTTAATCCCAGCACTTGGGAAGCAGAGGTGGGTAAATCTCTGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114461.3
3UTR TCA 72 bp CTGAACAGGGCAGAGTTCCTGGAGCAGAACCCAGAGTaGAGGTGGAATGCAGTGTGTCCCCATTCATATCTA +
Preference number: 3 (lower is better)
Translates to: LNRAEFLEQNPE*RWNAVCPHSYL
Trigger: TAGATATGAATGGGGACACACTGCATTCCACCTTCACTCTGGGTTCTGCTCCAGGAACTCTGCCCTGTTCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002084.14
3UTR TCA 72 bp CTAAGTGAGCCAAGGGCTAGGGTTTACAGATGCAGGTaGCCAGATAATCTGGGAAGTGTACCTTGTCCCCAG +
Preference number: 3 (lower is better)
Translates to: LSEPRARVYRCR*PDNLGSVPCPQ
Trigger: CTGGGGACAAGGTACACTTCCCAGATTATCTGGTCACCTGCATCTGTAAACCCTAGCCCTTGGCTCACTTAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114461.3
3UTR GCA 72 bp AGAGTTCCTGGAGCAGAACCCAGAGTGAAGGTGGAATaGAGTGTGTCCCCATTCATATCTACCTGTCCCAGA +
Preference number: 3 (lower is better)
Translates to: RVPGAEPRVKVE*SVSPFISTCPR
Trigger: TCTGGGACAGGTAGATATGAATGGGGACACACTGCATTCCACCTTCACTCTGGGTTCTGCTCCAGGAACTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002084.14
3UTR-3UTR CAA 90 bp CACAGAGATTTACCCACCTCTGCTTCCCAAGTGCTGGGATTAAAGGTATGTGTCCTCTCCAATTTATCTTaGGTTTCAAGTACCCAGCCC +
Preference number: 3 (lower is better)
Translates to: HRDLPTSASQVLGLKVCVLSNLS*VSSTQP
Trigger: GGGCTGGGTACTTGAAACCAAAGATAAATTGGAGAG...GACACATACCTTTAATCCCAGCACTTGGGAAGCAGAGGTGGGTAAATCTCTGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114461.3
3UTR TCA 72 bp ACAAGGGGATGGCAACAAAGGGATGGATCAAAACAATaGCAAGGATTTGGGTTTCGGCAGGGATGTAACCCA +
Preference number: 3 (lower is better)
Translates to: TRGWQQRDGSKQ*QGFGFRQGCNP
Trigger: TGGGTTACATCCCTGCCGAAACCCAAATCCTTGTCATTGTTTTGATCCATCCCTTTGTTGCCATCCCCTTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000002084.14
3UTR CCA 72 bp ACACTATTGCTTCAGGTCTCATGGTCAGAGATATGTTaGTCTTTCAGCTTCACCTTGGCCTATCTTCCACGT +
Preference number: 3 (lower is better)
Translates to: TLLLQVSWSEIC*SFSFTLAYLPR
Trigger: ACGTGGAAGATAGGCCAAGGTGAAGCTGAAAGACCAACATATCTCTGACCATGAGACCTGAAGCAATAGTGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114461.3
3UTR CCA 72 bp GCTGGGATTAAAGGTATGTGTCACAACAGTAAGCAGTaGATACTTCTTAAGGTCACTCACTCCACTCTCCAA +
Preference number: 3 (lower is better)
Translates to: AGIKGMCHNSKQ*ILLKVTHSTLQ
Trigger: TTGGAGAGTGGAGTGAGTGACCTTAAGAAGTATCCACTGCTTACTGTTGTGACACATACCTTTAATCCCAGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114461.3
3UTR-3UTR CAA 90 bp AACTTACTATGCAGACCAAACTGGCCTCAAACTCACAGAGATTTACCCACCTCTATGGTCAGAGATATGTaGGTCTTTCAGCTTCACCTT +
Preference number: 3 (lower is better)
Translates to: NLLCRPNWPQTHRDLPTSMVRDM*VFQLHL
Trigger: AAGGTGAAGCTGAAAGACCAACATATCTCTGACCAT...AGAGGTGGGTAAATCTCTGTGAGTTTGAGGCCAGTTTGGTCTGCATAGTAAGTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114461.3
3UTR CCA 72 bp CTTTTATCAGCACTTACACTATTGCTTCAGGTCTCATaGTCAGAGATATGTTGGTCTTTCAGCTTCACCTTG +
Preference number: 3 (lower is better)
Translates to: LLSALTLLLQVS*SEICWSFSFTL
Trigger: CAAGGTGAAGCTGAAAGACCAACATATCTCTGACCATGAGACCTGAAGCAATAGTGTAAGTGCTGATAAAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114461.3
CDS-3UTR TCA 90 bp GGGGGAGGGGAGGAGCTTCCTTCATGTGATCCGAGAGCCTGGAGAAGGGTGGGACAGGCCAGCGATGGCTaGGGGCCAGGCTGTGCCAGC +
Preference number: 4 (lower is better)
Translates to: GGGEELPSCDPRAWRRVGQASDG*GPGCAS
Trigger: GCTGGCACAGCCTGGCCCTCAGCCATCGCTGGCCTG...TCCCACCCTTCTCCAGGCTCTCGGATCACATGAAGGAAGCTCCTCCCCTCCCCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000002084.14
CDS-3UTR GCA 90 bp GGGAGGAGCTTCCTTCATGTGATCCGAGAGCCTGGAGAAGGGTGGGAGCTGGGGAGCCACTGCAGCAGTTaGCAGCTAAAGGCCCGCGGG +
Preference number: 4 (lower is better)
Translates to: GRSFLHVIREPGEGWELGSHCSS*QLKARG
Trigger: CCCGCGGGCCTTTAGCTGGCAACTGCTGCAGTGGCT...CCCCAGCTCCCACCCTTCTCCAGGCTCTCGGATCACATGAAGGAAGCTCCTCCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002084.14
CDS-3UTR TCA 90 bp GGTATAGAGTCAGGACTGGGGACTTCCAAACCCTCCATCCCTCCCCAGGGAAAACAGCGTGGTCACCCGTaGGGGCCGGGGAGTGGAGAG +
Preference number: 4 (lower is better)
Translates to: GIESGLGTSKPSIPPQGKQRGHP*GPGSGE
Trigger: CTCTCCACTCCCCGGCCCTCACGGGTGACCACGCTG...TTTTCCCTGGGGAGGGATGGAGGGTTTGGAAGTCCCCAGTCCTGACTCTATACC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 20 nt.
Matches the following 1 transcripts:
ENSMUST00000002084.14
CDS-3UTR TCA 90 bp TGGGTAACCATGGGGAAGGGCACACTTTGGGCCCTGTCTAATCCTGGGCCCCATTCCCCAGCTGGCACCTaGGGACCTCTGGCAGGAGTC +
Preference number: 4 (lower is better)
Translates to: WVTMGKGTLWALSNPGPHSPAGT*GPLAGV
Trigger: GACTCCTGCCAGAGGTCCTCAGGTGCCAGCTGGGGA...ATGGGGCCCAGGATTAGACAGGGCCCAAAGTGTGCCCTTCCCCATGGTTACCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000002084.14
CDS-3UTR TCA 90 bp GGAAGGGCACACTTTGGGCCCTGTCTAATCCTGGGCCCCATTAGGCTGTTTTCAGCTCCAGAGGCCTCTTaGGTGGGCTCCCCAGCTGGC +
Preference number: 4 (lower is better)
Translates to: GRAHFGPCLILGPIRLFSAPEAS*VGSPAG
Trigger: GCCAGCTGGGGAGCCCACTCAAGAGGCCTCTGGAGC...TGAAAACAGCCTAATGGGGCCCAGGATTAGACAGGGCCCAAAGTGTGCCCTTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000002084.14
CDS-3UTR GCA 90 bp GCACACAATGGCAGTAGGGTGTGTGTGTGGGGGCGTCTCCCTCTTGGTGAGGGCGGAATACCCGGTTCATaGCAGCCTTGGTTGCGGTGG +
Preference number: 4 (lower is better)
Translates to: AHNGSRVCVWGRLPLGEGGIPGS*QPWLRW
Trigger: CCACCGCAACCAAGGCTGGCATGAACCGGGTATTCC...GCCCTCACCAAGAGGGAGACGCCCCCACACACACACCCTACTGCCATTGTGTGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000002084.14
CDS-3UTR GCA 90 bp GGGGGAGGGGAGGAGCTTCCTTCATGTGATCCGAGAGCCTGGAGAAGGGTGGGAAGCGCCAAGAGCCGCTaGAGGAATACCCGGTTCATG +
Preference number: 4 (lower is better)
Translates to: GGGEELPSCDPRAWRRVGSAKSR*RNTRFM
Trigger: CATGAACCGGGTATTCCTGCAGCGGCTCTTGGCGCT...TCCCACCCTTCTCCAGGCTCTCGGATCACATGAAGGAAGCTCCTCCCCTCCCCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000002084.14
CDS-3UTR GCA 90 bp GGTTGCCACACATTCTGGCTGCTGGCAGTAAGGGAGGCAGCTCCTGCTTACTTCTGCAGCGGGCCAGTCTaGCGTCCAGGCGGGCAACAT +
Preference number: 4 (lower is better)
Translates to: GCHTFWLLAVREAAPAYFCSGPV*RPGGQH
Trigger: ATGTTGCCCGCCTGGACGGCAGACTGGCCCGCTGCA...GAAGTAAGCAGGAGCTGCCTCCCTTACTGCCAGCAGCCAGAATGTGTGGCAACC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002084.14
CDS-3UTR CCA 90 bp GAGGAGTGGGAGGGCCAGGGCTATATTCTCTTCATGGCTCAGGAGGAACTCTGTCCACCAGGCCAGCGATaGCTGAGGGCCAGGCTGTGC +
Preference number: 4 (lower is better)
Translates to: EEWEGQGYILFMAQEELCPPGQR*LRARLC
Trigger: GCACAGCCTGGCCCTCAGCCATCGCTGGCCTGGTGG...ACAGAGTTCCTCCTGAGCCATGAAGAGAATATAGCCCTGGCCCTCCCACTCCTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002084.14
CDS-3UTR TCA 90 bp TTCAAGTACCCAGCCCAGAGTTCAGGGAAGCCAGGTGGGATGGATGAATCATCACAGGCCAGCGATGGCTaGGGGCCAGGCTGTGCCAGC +
Preference number: 4 (lower is better)
Translates to: FKYPAQSSGKPGGMDESSQASDG*GPGCAS
Trigger: GCTGGCACAGCCTGGCCCTCAGCCATCGCTGGCCTG...TGATGATTCATCCATCCCACCTGGCTTCCCTGAACTCTGGGCTGGGTACTTGAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114461.3
CDS-3UTR TCA 90 bp GGAGGAGTGGGAGGGCCAGGGCTATATTCTCTTCATGGCTCAGGAGGAACTCTGACCCCAGGCCCAGCCTaGGCCTCCTCTAGATCTCCT +
Preference number: 4 (lower is better)
Translates to: GGVGGPGLYSLHGSGGTLTPGPA*ASSRSP
Trigger: AGGAGATCTAGAGGAGGCTCAGGCTGGGCCTGGGGT...CAGAGTTCCTCCTGAGCCATGAAGAGAATATAGCCCTGGCCCTCCCACTCCTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002084.14
CDS-3UTR TCA 90 bp GGTTGCCACACATTCTGGCTGCTGGCAGTAAGGGAGGCAGCTCCTGCTTACTTCCACCAGACTGTACCATaGCCCCAGGCCCAGCCTGAG +
Preference number: 4 (lower is better)
Translates to: GCHTFWLLAVREAAPAYFHQTVP*PQAQPE
Trigger: CTCAGGCTGGGCCTGGGGTCATGGTACAGTCTGGTG...GAAGTAAGCAGGAGCTGCCTCCCTTACTGCCAGCAGCCAGAATGTGTGGCAACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002084.14
CDS-3UTR GCA 90 bp GCACACAATGGCAGTAGGGTGTGTGTGTGGGGGCGTCTCCCTCTTGGTGAGGGCGCGATGAGGAGCCACTaGAGCAGTTGCCAGCTAAAG +
Preference number: 4 (lower is better)
Translates to: AHNGSRVCVWGRLPLGEGAMRSH*SSCQLK
Trigger: CTTTAGCTGGCAACTGCTGCAGTGGCTCCTCATCGC...GCCCTCACCAAGAGGGAGACGCCCCCACACACACACCCTACTGCCATTGTGTGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000002084.14
CDS-3UTR GCA 90 bp GGGGGAGGGGAGGAGCTTCCTTCATGTGATCCGAGAGCCTGGAGAAGGGTGGGACCTTTCGGTGGCATCTaGAGCAGCTGTGAGGAGGTT +
Preference number: 4 (lower is better)
Translates to: GGGEELPSCDPRAWRRVGPFGGI*SSCEEV
Trigger: AACCTCCTCACAGCTGCTGCAGATGCCACCGAAAGG...TCCCACCCTTCTCCAGGCTCTCGGATCACATGAAGGAAGCTCCTCCCCTCCCCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000002084.14
CDS-3UTR GCA 90 bp GGGAGGAGCTTCCTTCATGTGATCCGAGAGCCTGGAGAAGGGTGGGAGCTGGGGGGAACAGAGAACTCTTaGCACAGCCATTGGGGCCTG +
Preference number: 4 (lower is better)
Translates to: GRSFLHVIREPGEGWELGGTENS*HSHWGL
Trigger: CAGGCCCCAATGGCTGTGGCAAGAGTTCTCTGTTCC...CCCCAGCTCCCACCCTTCTCCAGGCTCTCGGATCACATGAAGGAAGCTCCTCCC
60% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000002084.14
CDS-3UTR CCA 90 bp AGTGGGAGGGCCAGGGCTATATTCTCTTCATGGCTCAGGAGGAACTCTGTCCTTCTGTGCGCTTCAGCGTaGTCACCCGTGAGGGCCGGG +
Preference number: 4 (lower is better)
Translates to: SGRARAIFSSWLRRNSVLLCASA*SPVRAG
Trigger: CCCGGCCCTCACGGGTGACCACGCTGAAGCGCACAG...AAGGACAGAGTTCCTCCTGAGCCATGAAGAGAATATAGCCCTGGCCCTCCCACT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002084.14
CDS-3UTR CCA 90 bp ACCTGTCCCAGAGTGGGGTCTTCAGGGAATGCAGGTAATTGGCTAGGAGGCTTGAGTGGGCTCCCCAGCTaGCACCTGAGGACCTCTGGC +
Preference number: 4 (lower is better)
Translates to: TCPRVGSSGNAGNWLGGLSGLPS*HLRTSG
Trigger: GCCAGAGGTCCTCAGGTGCCAGCTGGGGAGCCCACT...CAAGCCTCCTAGCCAATTACCTGCATTCCCTGAAGACCCCACTCTGGGACAGGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000002084.14
3UTR CAA 72 bp GGGTCTTCAGGGAATGCAGGTAATTGGCTAGGAGGCTaGGGAGGGGTAAGGCATGCAGGGCAATGGGGGAGG +
Preference number: 4 (lower is better)
Translates to: GSSGNAGNWLGG*GGVRHAGQWGR
Trigger: CCTCCCCCATTGCCCTGCATGCCTTACCCCTCCCAAGCCTCCTAGCCAATTACCTGCATTCCCTGAAGACCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000002084.14
CDS-3UTR TCA 90 bp GGAGTGGGAGGGCCAGGGCTATATTCTCTTCATGGCTCAGGAGGAACTCTGTCCGGGAGGGTCGATGGGTaGTGGAGAGCAGTGCGATAC +
Preference number: 4 (lower is better)
Translates to: GVGGPGLYSLHGSGGTLSGRVDG*WRAVRY
Trigger: GTATCGCACTGCTCTCCATCACCCATCGACCCTCCC...GGACAGAGTTCCTCCTGAGCCATGAAGAGAATATAGCCCTGGCCCTCCCACTCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002084.14
CDS-3UTR GCA 90 bp GAGTGGGAGGGCCAGGGCTATATTCTCTTCATGGCTCAGGAGGAACTCTGTCCTCATGCCAGCCTTGGTTaGGGTGGCTCCAGAGGCCTC +
Preference number: 4 (lower is better)
Translates to: EWEGQGYILFMAQEELCPHASLG*GGSRGL
Trigger: GAGGCCTCTGGAGCCACCGCAACCAAGGCTGGCATG...AGGACAGAGTTCCTCCTGAGCCATGAAGAGAATATAGCCCTGGCCCTCCCACTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002084.14
CDS-3UTR GCA 90 bp TGGGTAACCATGGGGAAGGGCACACTTTGGGCCCTGTCTAATCCTGGGCCCCATCCTGTGATGAGCAGGTaGATGCCTTCCTCCACCCTG +
Preference number: 4 (lower is better)
Translates to: WVTMGKGTLWALSNPGPHPVMSR*MPSSTL
Trigger: CAGGGTGGAGGAAGGCATGCACCTGCTCATCACAGG...ATGGGGCCCAGGATTAGACAGGGCCCAAAGTGTGCCCTTCCCCATGGTTACCCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000002084.14
CDS-3UTR GCA 90 bp GGGGGAGGGGAGGAGCTTCCTTCATGTGATCCGAGAGCCTGGAGAAGGGTGGGAGAGGGATATAGAACATaGGCTGGGGTGGGGGCTTAT +
Preference number: 4 (lower is better)
Translates to: GGGEELPSCDPRAWRRVGEGYRT*AGVGAY
Trigger: ATAAGCCCCCACCCCAGCGCATGTTCTATATCCCTC...TCCCACCCTTCTCCAGGCTCTCGGATCACATGAAGGAAGCTCCTCCCCTCCCCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000002084.14
CDS-3UTR CCA 90 bp TCTACCTGTCCCAGAGTGGGGTCTTCAGGGAATGCAGGTAATTGGCTAGGAGGCCAGAGGCCTCTTGAGTaGGCTCCCCAGCTGGCACCT +
Preference number: 4 (lower is better)
Translates to: STCPRVGSSGNAGNWLGGQRPLE*APQLAP
Trigger: AGGTGCCAGCTGGGGAGCCCACTCAAGAGGCCTCTG...GCCTCCTAGCCAATTACCTGCATTCCCTGAAGACCCCACTCTGGGACAGGTAGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000002084.14
CDS-3UTR CCA 90 bp TTCAAGTACCCAGCCCAGAGTTCAGGGAAGCCAGGTGGGATGGATGAATCATCACCACCAGGCCAGCGATaGCTGAGGGCCAGGCTGTGC +
Preference number: 4 (lower is better)
Translates to: FKYPAQSSGKPGGMDESSPPGQR*LRARLC
Trigger: GCACAGCCTGGCCCTCAGCCATCGCTGGCCTGGTGG...TGATGATTCATCCATCCCACCTGGCTTCCCTGAACTCTGGGCTGGGTACTTGAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114461.3
CDS-3UTR TCA 90 bp ACTATGCAGACCAAACTGGCCTCAAACTCACAGAGATTTACCCACCTCTGCTTCCAGCGTGGTCACCCGTaGGGGCCGGGGAGTGGAGAG +
Preference number: 4 (lower is better)
Translates to: TMQTKLASNSQRFTHLCFQRGHP*GPGSGE
Trigger: CTCTCCACTCCCCGGCCCTCACGGGTGACCACGCTG...GAAGCAGAGGTGGGTAAATCTCTGTGAGTTTGAGGCCAGTTTGGTCTGCATAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000114461.3
CDS-3UTR TCA 90 bp GATATGTTGGTCTTTCAGCTTCACCTTGGCCTATCTTCCACGTGGCTGGGGACATCCCCAGCTGGCACCTaGGGACCTCTGGCAGGAGTC +
Preference number: 4 (lower is better)
Translates to: DMLVFQLHLGLSSTWLGTSPAGT*GPLAGV
Trigger: GACTCCTGCCAGAGGTCCTCAGGTGCCAGCTGGGGA...TGTCCCCAGCCACGTGGAAGATAGGCCAAGGTGAAGCTGAAAGACCAACATATC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000114461.3
CDS-3UTR TCA 90 bp TCTACCTGTCCCAGAGTGGGGTCTTCAGGGAATGCAGGTAATTGGCTAGGAGGCTGGCAGGAAGGGCGATaGGGAGCCACTGCAGCAGTT +
Preference number: 4 (lower is better)
Translates to: STCPRVGSSGNAGNWLGGWQEGR*GATAAV
Trigger: AACTGCTGCAGTGGCTCCTCATCGCCCTTCCTGCCA...GCCTCCTAGCCAATTACCTGCATTCCCTGAAGACCCCACTCTGGGACAGGTAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002084.14
CDS-3UTR TCA 90 bp GTGGGGTCTTCAGGGAATGCAGGTAATTGGCTAGGAGGCTTGGGAGGGGTAAGGCATCTGCAGCAGCTGTaGGGAGGTTTCGGGCAATGG +
Preference number: 4 (lower is better)
Translates to: VGSSGNAGNWLGGLGGVRHLQQL*GGFGQW
Trigger: CCATTGCCCGAAACCTCCTCACAGCTGCTGCAGATG...CCTTACCCCTCCCAAGCCTCCTAGCCAATTACCTGCATTCCCTGAAGACCCCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000002084.14
CDS-3UTR TCA 90 bp CTGGGAAGTGTACCTTGTCCCCAGCTACTTGGCTCAGATTGGTCAGCACTTCAGACCCCAGGCCCAGCCTaGGCCTCCTCTAGATCTCCT +
Preference number: 4 (lower is better)
Translates to: LGSVPCPQLLGSDWSALQTPGPA*ASSRSP
Trigger: AGGAGATCTAGAGGAGGCTCAGGCTGGGCCTGGGGT...CTGAAGTGCTGACCAATCTGAGCCAAGTAGCTGGGGACAAGGTACACTTCCCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000114461.3
CDS-3UTR GCA 90 bp GAGGAGTGGGAGGGCCAGGGCTATATTCTCTTCATGGCTCAGGAGGAACTCTGTACCAGGGCAGCAGAATaGAGGGCCAGCAGCCCTGTT +
Preference number: 4 (lower is better)
Translates to: EEWEGQGYILFMAQEELCTRAAE*RASSPV
Trigger: AACAGGGCTGCTGGCCCTGCATTCTGCTGCCCTGGT...ACAGAGTTCCTCCTGAGCCATGAAGAGAATATAGCCCTGGCCCTCCCACTCCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002084.14
CDS-3UTR CCA 90 bp GAGGAGTGGGAGGGCCAGGGCTATATTCTCTTCATGGCTCAGGAGGAACTCTGTTCCCGTTGCAGGATGTaGCGGAGATGCACGATGCCC +
Preference number: 4 (lower is better)
Translates to: EEWEGQGYILFMAQEELCSRCRM*RRCTMP
Trigger: GGGCATCGTGCATCTCCGCCACATCCTGCAACGGGA...ACAGAGTTCCTCCTGAGCCATGAAGAGAATATAGCCCTGGCCCTCCCACTCCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002084.14
CDS-3UTR TCA 90 bp GATATGTTGGTCTTTCAGCTTCACCTTGGCCTATCTTCCACGTGGCTGGGGACACACCAGACTGTACCATaGCCCCAGGCCCAGCCTGAG +
Preference number: 4 (lower is better)
Translates to: DMLVFQLHLGLSSTWLGTHQTVP*PQAQPE
Trigger: CTCAGGCTGGGCCTGGGGTCATGGTACAGTCTGGTG...TGTCCCCAGCCACGTGGAAGATAGGCCAAGGTGAAGCTGAAAGACCAACATATC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000114461.3
CDS-3UTR GCA 90 bp CTGGGAAGTGTACCTTGTCCCCAGCTACTTGGCTCAGATTGGTCAGCACTTCAGACCAGGGCAGCAGAATaGAGGGCCAGCAGCCCTGTT +
Preference number: 4 (lower is better)
Translates to: LGSVPCPQLLGSDWSALQTRAAE*RASSPV
Trigger: AACAGGGCTGCTGGCCCTGCATTCTGCTGCCCTGGT...CTGAAGTGCTGACCAATCTGAGCCAAGTAGCTGGGGACAAGGTACACTTCCCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114461.3
CDS-3UTR GCA 90 bp GAGTGGGAGGGCCAGGGCTATATTCTCTTCATGGCTCAGGAGGAACTCTGTCCTATTGCTTCCAGCTGCTaGTCCGAGCAGCCCTTCCTC +
Preference number: 4 (lower is better)
Translates to: EWEGQGYILFMAQEELCPIASSC*SEQPFL
Trigger: GAGGAAGGGCTGCTCGGAGCAGCAGCTGGAAGCAAT...AGGACAGAGTTCCTCCTGAGCCATGAAGAGAATATAGCCCTGGCCCTCCCACTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002084.14
CDS-3UTR GCA 90 bp ACCTGTCCCAGAGTGGGGTCTTCAGGGAATGCAGGTAATTGGCTAGGAGGCTTGGGCGGAGATGCACGATaGCCAGGATTGCTTCCAGCT +
Preference number: 4 (lower is better)
Translates to: TCPRVGSSGNAGNWLGGLGGDAR*PGLLPA
Trigger: AGCTGGAAGCAATCCTGGGCATCGTGCATCTCCGCC...CAAGCCTCCTAGCCAATTACCTGCATTCCCTGAAGACCCCACTCTGGGACAGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002084.14
CDS-3UTR GCA 90 bp GGGGGAGGGGAGGAGCTTCCTTCATGTGATCCGAGAGCCTGGAGAAGGGTGGGAACCAGCATCTTTGGCTaGTTGGAAGATCTTGCCTTC +
Preference number: 4 (lower is better)
Translates to: GGGEELPSCDPRAWRRVGTSIFG*LEDLAF
Trigger: GAAGGCAAGATCTTCCAAGCAGCCAAAGATGCTGGT...TCCCACCCTTCTCCAGGCTCTCGGATCACATGAAGGAAGCTCCTCCCCTCCCCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000002084.14
CDS-3UTR CCA 90 bp AGACCAAACTGGCCTCAAACTCACAGAGATTTACCCACCTCTGCTTCCCAAGTGAGTGGGCTCCCCAGCTaGCACCTGAGGACCTCTGGC +
Preference number: 4 (lower is better)
Translates to: RPNWPQTHRDLPTSASQVSGLPS*HLRTSG
Trigger: GCCAGAGGTCCTCAGGTGCCAGCTGGGGAGCCCACT...CACTTGGGAAGCAGAGGTGGGTAAATCTCTGTGAGTTTGAGGCCAGTTTGGTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114461.3
CDS-3UTR GCA 90 bp ATATCTACCTGTCCCAGAGTGGGGTCTTCAGGGAATGCAGGTAATTGGCTAGGACCAGGACCACAGCTGTaGGCTTCAGCGTGGTCACCC +
Preference number: 4 (lower is better)
Translates to: ISTCPRVGSSGNAGNWLGPGPQL*ASAWSP
Trigger: GGGTGACCACGCTGAAGCGCACAGCTGTGGTCCTGG...TCCTAGCCAATTACCTGCATTCCCTGAAGACCCCACTCTGGGACAGGTAGATAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002084.14
CDS-3UTR GCA 90 bp AGACCAAACTGGCCTCAAACTCACAGAGATTTACCCACCTCTGCTTCCCAAGTGAGCCACTGCAGCAGTTaGCAGCTAAAGGCCCGCGGG +
Preference number: 4 (lower is better)
Translates to: RPNWPQTHRDLPTSASQVSHCSS*QLKARG
Trigger: CCCGCGGGCCTTTAGCTGGCAACTGCTGCAGTGGCT...CACTTGGGAAGCAGAGGTGGGTAAATCTCTGTGAGTTTGAGGCCAGTTTGGTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114461.3
CDS-3UTR CCA 90 bp GATTTACCCACCTCTGCTTCCCAAGTGCTGGGATTAAAGGTATGTGTCACAACACTGTGCGCTTCAGCGTaGTCACCCGTGAGGGCCGGG +
Preference number: 4 (lower is better)
Translates to: DLPTSASQVLGLKVCVTTLCASA*SPVRAG
Trigger: CCCGGCCCTCACGGGTGACCACGCTGAAGCGCACAG...TGTTGTGACACATACCTTTAATCCCAGCACTTGGGAAGCAGAGGTGGGTAAATC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114461.3
CDS-3UTR TCA 90 bp TATCCTGTGGGACAGGGGCATTGGCTGGTCACACAAGGGGATGGCAACAAAGGGTCCTCTGTCAGAGACTaGTCAGGGTTTCGAAGTCGT +
Preference number: 4 (lower is better)
Translates to: YPVGQGHWLVTQGDGNKGSSVRD*SGFRSR
Trigger: ACGACTTCGAAACCCTGATCAGTCTCTGACAGAGGA...CCCTTTGTTGCCATCCCCTTGTGTGACCAGCCAATGCCCCTGTCCCACAGGATA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000002084.14
CDS-3UTR CCA 90 bp CCTTCTTGGGTAACCATGGGGAAGGGCACACTTTGGGCCCTGTCTAATCCTGGGAGGCTGCCTTCTTCATaGCTTCTGAGTCTGACTCTG +
Preference number: 4 (lower is better)
Translates to: PSWVTMGKGTLWALSNPGRLPSS*LLSLTL
Trigger: CAGAGTCAGACTCAGAAGCCATGAAGAAGGCAGCCT...CCCAGGATTAGACAGGGCCCAAAGTGTGCCCTTCCCCATGGTTACCCAAGAAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002084.14
CDS-3UTR CCA 90 bp AGTGGGAGGGCCAGGGCTATATTCTCTTCATGGCTCAGGAGGAACTCTGTCCTTTCCACAACTTGGCCTTaGATCTTCAGGGGCCCCTCT +
Preference number: 4 (lower is better)
Translates to: SGRARAIFSSWLRRNSVLSTTWP*IFRGPS
Trigger: AGAGGGGCCCCTGAAGATCCAAGGCCAAGTTGTGGA...AAGGACAGAGTTCCTCCTGAGCCATGAAGAGAATATAGCCCTGGCCCTCCCACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000002084.14
CDS-3UTR CCA 90 bp AGTGGGAGGGCCAGGGCTATATTCTCTTCATGGCTCAGGAGGAACTCTGTCCTTGAACATGCGCTGGGGTaGGGGCTTATAGAGTACACC +
Preference number: 4 (lower is better)
Translates to: SGRARAIFSSWLRRNSVLEHALG*GLIEYT
Trigger: GGTGTACTCTATAAGCCCCCACCCCAGCGCATGTTC...AAGGACAGAGTTCCTCCTGAGCCATGAAGAGAATATAGCCCTGGCCCTCCCACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000002084.14
CDS-3UTR TCA 90 bp GGCAACAAAGGGATGGATCAAAACAATGACAAGGATTTGGGTTTCGGCAGGGATCCTGGGACCAGGGGTTaGACTGGAGCTGCAGCTTCG +
Preference number: 4 (lower is better)
Translates to: GNKGMDQNNDKDLGFGRDPGTRG*TGAAAS
Trigger: CGAAGCTGCAGCTCCAGTTCAACCCCTGGTCCCAGG...ATCCCTGCCGAAACCCAAATCCTTGTCATTGTTTTGATCCATCCCTTTGTTGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000002084.14
CDS-3UTR GCA 90 bp GATTTACCCACCTCTGCTTCCCAAGTGCTGGGATTAAAGGTATGTGTCACAACACCAGGACCACAGCTGTaGGCTTCAGCGTGGTCACCC +
Preference number: 4 (lower is better)
Translates to: DLPTSASQVLGLKVCVTTPGPQL*ASAWSP
Trigger: GGGTGACCACGCTGAAGCGCACAGCTGTGGTCCTGG...TGTTGTGACACATACCTTTAATCCCAGCACTTGGGAAGCAGAGGTGGGTAAATC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114461.3
CDS-3UTR GCA 90 bp GGAAGGGCACACTTTGGGCCCTGTCTAATCCTGGGCCCCATTAGGCTGTTTTCATCACAGATGATCCCCTaGTCCACATCCACAACTTGG +
Preference number: 4 (lower is better)
Translates to: GRAHFGPCLILGPIRLFSSQMIP*STSTTW
Trigger: CCAAGTTGTGGATGTGGAGCAGGGGATCATCTGTGA...TGAAAACAGCCTAATGGGGCCCAGGATTAGACAGGGCCCAAAGTGTGCCCTTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000002084.14
CDS-3UTR CCA 90 bp GCATGCAGGGCAATGGGGGAGGGGAGGAGCTTCCTTCATGTGATCCGAGAGCCTACATCTTCAAATACCTaGAACATCTCGTACACCCTG +
Preference number: 4 (lower is better)
Translates to: ACRAMGEGRSFLHVIREPTSSNT*NISYTL
Trigger: CAGGGTGTACGAGATGTTCCAGGTATTTGAAGATGT...AGGCTCTCGGATCACATGAAGGAAGCTCCTCCCCTCCCCCATTGCCCTGCATGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000002084.14
CDS-3UTR CCA 90 bp TTCAAGTACCCAGCCCAGAGTTCAGGGAAGCCAGGTGGGATGGATGAATCATCATCCACAACTTGGCCTTaGATCTTCAGGGGCCCCTCT +
Preference number: 4 (lower is better)
Translates to: FKYPAQSSGKPGGMDESSSTTWP*IFRGPS
Trigger: AGAGGGGCCCCTGAAGATCCAAGGCCAAGTTGTGGA...TGATGATTCATCCATCCCACCTGGCTTCCCTGAACTCTGGGCTGGGTACTTGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000114461.3
CDS-3UTR CCA 90 bp ATATCTACCTGTCCCAGAGTGGGGTCTTCAGGGAATGCAGGTAATTGGCTAGGACCAGGAGGGCGTACTTaGGCCTGTGGTAGAACATGC +
Preference number: 4 (lower is better)
Translates to: ISTCPRVGSSGNAGNWLGPGGRT*ACGRTC
Trigger: GCATGTTCTACCACAGGCCCAAGTACGCCCTCCTGG...TCCTAGCCAATTACCTGCATTCCCTGAAGACCCCACTCTGGGACAGGTAGATAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002084.14
CDS-3UTR TCA 90 bp GGCAACAAAGGGATGGATCAAAACAATGACAAGGATTTGGGTTTCGGCAGGGATGAAGCACGTTGGCTGTaGGGAACACCACCAGGCCAG +
Preference number: 4 (lower is better)
Translates to: GNKGMDQNNDKDLGFGRDEARWL*GTPPGQ
Trigger: CTGGCCTGGTGGTGTTCCTCACAGCCAACGTGCTTC...ATCCCTGCCGAAACCCAAATCCTTGTCATTGTTTTGATCCATCCCTTTGTTGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002084.14
CDS-3UTR GCA 90 bp AAGGTATGTGTCACAACAGTAAGCAGTGGATACTTCTTAAGGTCACTCACTCCATGCAGCGGGCCAGTCTaGCGTCCAGGCGGGCAACAT +
Preference number: 4 (lower is better)
Translates to: KVCVTTVSSGYFLRSLTPCSGPV*RPGGQH
Trigger: ATGTTGCCCGCCTGGACGGCAGACTGGCCCGCTGCA...TGGAGTGAGTGACCTTAAGAAGTATCCACTGCTTACTGTTGTGACACATACCTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114461.3
CDS-3UTR CCA 90 bp GGTATAGAGTCAGGACTGGGGACTTCCAAACCCTCCATCCCTCCCCAGGGAAAACATCCAGGAGTGGCTTaGTCAGGTTGGAATAAAGGT +
Preference number: 4 (lower is better)
Translates to: GIESGLGTSKPSIPPQGKHPGVA*SGWNKG
Trigger: ACCTTTATTCCAACCTGACCAAGCCACTCCTGGATG...TTTTCCCTGGGGAGGGATGGAGGGTTTGGAAGTCCCCAGTCCTGACTCTATACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000002084.14
CDS-3UTR CCA 90 bp GAGGAGTGGGAGGGCCAGGGCTATATTCTCTTCATGGCTCAGGAGGAACTCTGTCGATACCAGCATCTTTaGCTGCTTGGAAGATCTTGC +
Preference number: 4 (lower is better)
Translates to: EEWEGQGYILFMAQEELCRYQHL*LLGRSC
Trigger: GCAAGATCTTCCAAGCAGCCAAAGATGCTGGTATCG...ACAGAGTTCCTCCTGAGCCATGAAGAGAATATAGCCCTGGCCCTCCCACTCCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002084.14
CDS-3UTR CCA 90 bp CAGTGTGTCCCCATTCATATCTACCTGTCCCAGAGTGGGGTCTTCAGGGAATGCTGCAGCAAGTGTGTGTaGTACTTCCATAGGGAGGGT +
Preference number: 4 (lower is better)
Translates to: QCVPIHIYLSQSGVFRECCSKCV*YFHREG
Trigger: ACCCTCCCTATGGAAGTACCACACACACTTGCTGCA...GCATTCCCTGAAGACCCCACTCTGGGACAGGTAGATATGAATGGGGACACACTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000002084.14
CDS-3UTR TCA 90 bp GATATGTTGGTCTTTCAGCTTCACCTTGGCCTATCTTCCACGTGGCTGGGGACATCCTCTGTCAGAGACTaGTCAGGGTTTCGAAGTCGT +
Preference number: 4 (lower is better)
Translates to: DMLVFQLHLGLSSTWLGTSSVRD*SGFRSR
Trigger: ACGACTTCGAAACCCTGATCAGTCTCTGACAGAGGA...TGTCCCCAGCCACGTGGAAGATAGGCCAAGGTGAAGCTGAAAGACCAACATATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114461.3
CDS-3UTR TCA 90 bp GAGGAGTGGGAGGGCCAGGGCTATATTCTCTTCATGGCTCAGGAGGAACTCTGTCCTTATAAGATGACATaGTCCTTTCGGTGGCATCTG +
Preference number: 4 (lower is better)
Translates to: EEWEGQGYILFMAQEELCPYKMT*SFRWHL
Trigger: CAGATGCCACCGAAAGGATCATGTCATCTTATAAGG...ACAGAGTTCCTCCTGAGCCATGAAGAGAATATAGCCCTGGCCCTCCCACTCCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002084.14
CDS-3UTR GCA 90 bp GATATGTTGGTCTTTCAGCTTCACCTTGGCCTATCTTCCACGTGGCTGGGGACATCACAGATGATCCCCTaGTCCACATCCACAACTTGG +
Preference number: 4 (lower is better)
Translates to: DMLVFQLHLGLSSTWLGTSQMIP*STSTTW
Trigger: CCAAGTTGTGGATGTGGAGCAGGGGATCATCTGTGA...TGTCCCCAGCCACGTGGAAGATAGGCCAAGGTGAAGCTGAAAGACCAACATATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000114461.3
CDS-3UTR TCA 90 bp AAGGTATGTGTCACAACAGTAAGCAGTGGATACTTCTTAAGGTCACTCACTCCAGAAGCACGTTGGCTGTaGGGAACACCACCAGGCCAG +
Preference number: 4 (lower is better)
Translates to: KVCVTTVSSGYFLRSLTPEARWL*GTPPGQ
Trigger: CTGGCCTGGTGGTGTTCCTCACAGCCAACGTGCTTC...TGGAGTGAGTGACCTTAAGAAGTATCCACTGCTTACTGTTGTGACACATACCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114461.3
CDS-3UTR GCA 90 bp TATCAGCACTTACACTATTGCTTCAGGTCTCATGGTCAGAGATATGTTGGTCTTCATGCCAGCCTTGGTTaGGGTGGCTCCAGAGGCCTC +
Preference number: 4 (lower is better)
Translates to: YQHLHYCFRSHGQRYVGLHASLG*GGSRGL
Trigger: GAGGCCTCTGGAGCCACCGCAACCAAGGCTGGCATG...AAGACCAACATATCTCTGACCATGAGACCTGAAGCAATAGTGTAAGTGCTGATA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114461.3
CDS-3UTR TCA 90 bp AAGGTATGTGTCACAACAGTAAGCAGTGGATACTTCTTAAGGTCACTCACTCCACATCTGCAGCAGCTGTaGGGAGGTTTCGGGCAATGG +
Preference number: 4 (lower is better)
Translates to: KVCVTTVSSGYFLRSLTPHLQQL*GGFGQW
Trigger: CCATTGCCCGAAACCTCCTCACAGCTGCTGCAGATG...TGGAGTGAGTGACCTTAAGAAGTATCCACTGCTTACTGTTGTGACACATACCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114461.3
CDS-3UTR CCA 90 bp CACAGAGATTTACCCACCTCTGCTTCCCAAGTGCTGGGATTAAAGGTATGTGTCAGGCTGCCTTCTTCATaGCTTCTGAGTCTGACTCTG +
Preference number: 4 (lower is better)
Translates to: HRDLPTSASQVLGLKVCVRLPSS*LLSLTL
Trigger: CAGAGTCAGACTCAGAAGCCATGAAGAAGGCAGCCT...GACACATACCTTTAATCCCAGCACTTGGGAAGCAGAGGTGGGTAAATCTCTGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114461.3
CDS-3UTR TCA 90 bp TACTTCTTAAGGTCACTCACTCCACTCTCCAATTTATCTTTGGTTTCAAGTACCTGGCAGGAAGGGCGATaGGGAGCCACTGCAGCAGTT +
Preference number: 4 (lower is better)
Translates to: YFLRSLTPLSNLSLVSSTWQEGR*GATAAV
Trigger: AACTGCTGCAGTGGCTCCTCATCGCCCTTCCTGCCA...GGTACTTGAAACCAAAGATAAATTGGAGAGTGGAGTGAGTGACCTTAAGAAGTA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114461.3
CDS-3UTR CCA 90 bp GGCAACAAAGGGATGGATCAAAACAATGACAAGGATTTGGGTTTCGGCAGGGATGTGGCTTGGTCAGGTTaGAATAAAGGTGGGCTACAG +
Preference number: 4 (lower is better)
Translates to: GNKGMDQNNDKDLGFGRDVAWSG*NKGGLQ
Trigger: CTGTAGCCCACCTTTATTCCAACCTGACCAAGCCAC...ATCCCTGCCGAAACCCAAATCCTTGTCATTGTTTTGATCCATCCCTTTGTTGCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002084.14
CDS-3UTR CCA 90 bp ATGGCAACAAAGGGATGGATCAAAACAATGACAAGGATTTGGGTTTCGGCAGGGAGCCACATCCAGGAGTaGCTTGGTCAGGTTGGAATA +
Preference number: 4 (lower is better)
Translates to: MATKGWIKTMTRIWVSAGSHIQE*LGQVGI
Trigger: TATTCCAACCTGACCAAGCCACTCCTGGATGTGGCT...CCCTGCCGAAACCCAAATCCTTGTCATTGTTTTGATCCATCCCTTTGTTGCCAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002084.14
CDS-3UTR GCA 90 bp TCTTTTATCAGCACTTACACTATTGCTTCAGGTCTCATGGTCAGAGATATGTTGAGCGCCAAGAGCCGCTaGAGGAATACCCGGTTCATG +
Preference number: 4 (lower is better)
Translates to: SFISTYTIASGLMVRDMLSAKSR*RNTRFM
Trigger: CATGAACCGGGTATTCCTGCAGCGGCTCTTGGCGCT...CAACATATCTCTGACCATGAGACCTGAAGCAATAGTGTAAGTGCTGATAAAAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114461.3
CDS-3UTR CCA 90 bp GATTTACCCACCTCTGCTTCCCAAGTGCTGGGATTAAAGGTATGTGTCACAACACATCCAGGAGTGGCTTaGTCAGGTTGGAATAAAGGT +
Preference number: 4 (lower is better)
Translates to: DLPTSASQVLGLKVCVTTHPGVA*SGWNKG
Trigger: ACCTTTATTCCAACCTGACCAAGCCACTCCTGGATG...TGTTGTGACACATACCTTTAATCCCAGCACTTGGGAAGCAGAGGTGGGTAAATC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114461.3
CDS-3UTR CCA 90 bp GCACTTACACTATTGCTTCAGGTCTCATGGTCAGAGATATGTTGGTCTTTCAGCAGCCACATCCAGGAGTaGCTTGGTCAGGTTGGAATA +
Preference number: 4 (lower is better)
Translates to: ALTLLLQVSWSEICWSFSSHIQE*LGQVGI
Trigger: TATTCCAACCTGACCAAGCCACTCCTGGATGTGGCT...GCTGAAAGACCAACATATCTCTGACCATGAGACCTGAAGCAATAGTGTAAGTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114461.3
CDS-3UTR GCA 90 bp TACTTCTTAAGGTCACTCACTCCACTCTCCAATTTATCTTTGGTTTCAAGTACCGCGATGAGGAGCCACTaGAGCAGTTGCCAGCTAAAG +
Preference number: 4 (lower is better)
Translates to: YFLRSLTPLSNLSLVSSTAMRSH*SSCQLK
Trigger: CTTTAGCTGGCAACTGCTGCAGTGGCTCCTCATCGC...GGTACTTGAAACCAAAGATAAATTGGAGAGTGGAGTGAGTGACCTTAAGAAGTA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114461.3
CDS-3UTR GCA 90 bp TACTTCTTAAGGTCACTCACTCCACTCTCCAATTTATCTTTGGTTTCAAGTACCCCTTTCGGTGGCATCTaGAGCAGCTGTGAGGAGGTT +
Preference number: 4 (lower is better)
Translates to: YFLRSLTPLSNLSLVSSTPFGGI*SSCEEV
Trigger: AACCTCCTCACAGCTGCTGCAGATGCCACCGAAAGG...GGTACTTGAAACCAAAGATAAATTGGAGAGTGGAGTGAGTGACCTTAAGAAGTA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114461.3
CDS-3UTR CCA 90 bp AAGGTATGTGTCACAACAGTAAGCAGTGGATACTTCTTAAGGTCACTCACTCCAGTGGCTTGGTCAGGTTaGAATAAAGGTGGGCTACAG +
Preference number: 4 (lower is better)
Translates to: KVCVTTVSSGYFLRSLTPVAWSG*NKGGLQ
Trigger: CTGTAGCCCACCTTTATTCCAACCTGACCAAGCCAC...TGGAGTGAGTGACCTTAAGAAGTATCCACTGCTTACTGTTGTGACACATACCTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114461.3
3UTR CAA 72 bp TACACTATTGCTTCAGGTCTCATGGTCAGAGATATGTaGGTCTTTCAGCTTCACCTTGGCCTATCTTCCACG +
Preference number: 4 (lower is better)
Translates to: YTIASGLMVRDM*VFQLHLGLSST
Trigger: CGTGGAAGATAGGCCAAGGTGAAGCTGAAAGACCAACATATCTCTGACCATGAGACCTGAAGCAATAGTGTA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114461.3
3UTR CAA 72 bp TTCTTAAGGTCACTCACTCCACTCTCCAATTTATCTTaGGTTTCAAGTACCCAGCCCAGAGTTCAGGGAAGC +
Preference number: 4 (lower is better)
Translates to: FLRSLTPLSNLS*VSSTQPRVQGS
Trigger: GCTTCCCTGAACTCTGGGCTGGGTACTTGAAACCAAAGATAAATTGGAGAGTGGAGTGAGTGACCTTAAGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114461.3
CDS-3UTR CCA 90 bp GATTTACCCACCTCTGCTTCCCAAGTGCTGGGATTAAAGGTATGTGTCACAACAACATCTTCAAATACCTaGAACATCTCGTACACCCTG +
Preference number: 4 (lower is better)
Translates to: DLPTSASQVLGLKVCVTTTSSNT*NISYTL
Trigger: CAGGGTGTACGAGATGTTCCAGGTATTTGAAGATGT...TGTTGTGACACATACCTTTAATCCCAGCACTTGGGAAGCAGAGGTGGGTAAATC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114461.3
CDS-3UTR TCA 90 bp AAGGTATGTGTCACAACAGTAAGCAGTGGATACTTCTTAAGGTCACTCACTCCACCTTATAAGATGACATaGTCCTTTCGGTGGCATCTG +
Preference number: 4 (lower is better)
Translates to: KVCVTTVSSGYFLRSLTPPYKMT*SFRWHL
Trigger: CAGATGCCACCGAAAGGATCATGTCATCTTATAAGG...TGGAGTGAGTGACCTTAAGAAGTATCCACTGCTTACTGTTGTGACACATACCTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114461.3
CDS TCA 90 bp TCGAAGCACGTTGGCTGTGAGGAACACCACCAGGCCAGCGATGGCTaGGGGCCAGGCTGTGCCAGCTCCTCGGGATCGGGCAGCTCGAAG +
Preference number: 5 (lower is better)
Translates to: SKHVGCEEHHQASDG*GPGCASSSGSGSSK
Trigger: CTTCGAGCTGCCCGATCCCGAGGAGCTGGCACAGCCTGGCCCTCAGCCATCGCTGGCCTGGTGGTGTTCCTCACAGCCAACGTGCTTCGA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002084.14
ENSMUST00000114461.3
CDS GCA 90 bp CGCCAAGAGCCGCTGCAGGAATACCCGGTTCATGCCAGCCTTGGTTaGGGTGGCTCCAGAGGCCTCTTGAGTGGGCTCCCCAGCTGGCAC +
Preference number: 5 (lower is better)
Translates to: RQEPLQEYPVHASLG*GGSRGLLSGLPSWH
Trigger: GTGCCAGCTGGGGAGCCCACTCAAGAGGCCTCTGGAGCCACCGCAACCAAGGCTGGCATGAACCGGGTATTCCTGCAGCGGCTCTTGGCG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002084.14
ENSMUST00000114461.3
CDS CCA 90 bp GGAGCGCCAAGAGCCGCTGCAGGAATACCCGGTTCATGCCAGCCTTaGTTGCGGTGGCTCCAGAGGCCTCTTGAGTGGGCTCCCCAGCTG +
Preference number: 5 (lower is better)
Translates to: GAPRAAAGIPGSCQP*LRWLQRPLEWAPQL
Trigger: CAGCTGGGGAGCCCACTCAAGAGGCCTCTGGAGCCACCGCAACCAAGGCTGGCATGAACCGGGTATTCCTGCAGCGGCTCTTGGCGCTCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002084.14
ENSMUST00000114461.3
CDS GCA 90 bp GCAGCCTCAGGAGCGCCAAGAGCCGCTGCAGGAATACCCGGTTCATaGCAGCCTTGGTTGCGGTGGCTCCAGAGGCCTCTTGAGTGGGCT +
Preference number: 5 (lower is better)
Translates to: AASGAPRAAAGIPGS*QPWLRWLQRPLEWA
Trigger: AGCCCACTCAAGAGGCCTCTGGAGCCACCGCAACCAAGGCTGGCATGAACCGGGTATTCCTGCAGCGGCTCTTGGCGCTCCTGAGGCTGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000002084.14
ENSMUST00000114461.3
CDS CCA 90 bp GGTTCATGCCAGCCTTGGTTGCGGTGGCTCCAGAGGCCTCTTGAGTaGGCTCCCCAGCTGGCACCTGAGGACCTCTGGCAGGAGTCAGAC +
Preference number: 5 (lower is better)
Translates to: GSCQPWLRWLQRPLE*APQLAPEDLWQESD
Trigger: GTCTGACTCCTGCCAGAGGTCCTCAGGTGCCAGCTGGGGAGCCCACTCAAGAGGCCTCTGGAGCCACCGCAACCAAGGCTGGCATGAACC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002084.14
ENSMUST00000114461.3
CDS TCA 90 bp CTAGCTCCCCAAACTTGGGAGAGAAGGCTCGAAGCACGTTGGCTGTaGGGAACACCACCAGGCCAGCGATGGCTGAGGGCCAGGCTGTGC +
Preference number: 5 (lower is better)
Translates to: LAPQTWERRLEARWL*GTPPGQRWLRARLC
Trigger: GCACAGCCTGGCCCTCAGCCATCGCTGGCCTGGTGGTGTTCCTCACAGCCAACGTGCTTCGAGCCTTCTCTCCCAAGTTTGGGGAGCTAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002084.14
ENSMUST00000114461.3
CDS GCA 90 bp AGGATGTGGCGGAGATGCACGATGCCCAGGATTGCTTCCAGCTGCTaGTCCGAGCAGCCCTTCCTCCGCATGTCTTCCGCAGAGTCGGGA +
Preference number: 5 (lower is better)
Translates to: RMWRRCTMPRIASSC*SEQPFLRMSSAESG
Trigger: TCCCGACTCTGCGGAAGACATGCGGAGGAAGGGCTGCTCGGAGCAGCAGCTGGAAGCAATCCTGGGCATCGTGCATCTCCGCCACATCCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002084.14
CDS-3UTR CAA 90 bp GGAGTGGGAGGGCCAGGGCTATATTCTCTTCATGGCTCAGGAGGAACTCTGTCCGGCTCCAGAGGCCTCTaGAGTGGGCTCCCCAGCTGG +
Preference number: 5 (lower is better)
Translates to: GVGGPGLYSLHGSGGTLSGSRGL*SGLPSW
Trigger: CCAGCTGGGGAGCCCACTCAAGAGGCCTCTGGAGCC...GGACAGAGTTCCTCCTGAGCCATGAAGAGAATATAGCCCTGGCCCTCCCACTCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002084.14
CDS-3UTR CAA 90 bp GCATGCAGGGCAATGGGGGAGGGGAGGAGCTTCCTTCATGTGATCCGAGAGCCTCTCTTGCCACAGCCATaGGGGCCTGTGATGAGCAGG +
Preference number: 5 (lower is better)
Translates to: ACRAMGEGRSFLHVIREPLLPQP*GPVMSR
Trigger: CCTGCTCATCACAGGCCCCAATGGCTGTGGCAAGAG...AGGCTCTCGGATCACATGAAGGAAGCTCCTCCCCTCCCCCATTGCCCTGCATGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000002084.14
CDS GCA 90 bp TTGATGAAAGTGGCAGGAAGGGCGATGAGGAGCCACTGCAGCAGTTaGCAGCTAAAGGCCCGCGGGTCCTTACGTACAATGCAGCGGGCC +
Preference number: 5 (lower is better)
Translates to: LMKVAGRAMRSHCSS*QLKARGSLRTMQRA
Trigger: GGCCCGCTGCATTGTACGTAAGGACCCGCGGGCCTTTAGCTGGCAACTGCTGCAGTGGCTCCTCATCGCCCTTCCTGCCACTTTCATCAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000002084.14
ENSMUST00000114461.3
CDS-3UTR CAA 90 bp GAGGAGTGGGAGGGCCAGGGCTATATTCTCTTCATGGCTCAGGAGGAACTCTGTGAGCCACTGCAGCAGTaGCCAGCTAAAGGCCCGCGG +
Preference number: 5 (lower is better)
Translates to: EEWEGQGYILFMAQEELCEPLQQ*PAKGPR
Trigger: CCGCGGGCCTTTAGCTGGCAACTGCTGCAGTGGCTC...ACAGAGTTCCTCCTGAGCCATGAAGAGAATATAGCCCTGGCCCTCCCACTCCTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002084.14
CDS CCA 90 bp CAGAGGCCTCTTGAGTGGGCTCCCCAGCTGGCACCTGAGGACCTCTaGCAGGAGTCAGACACTGCCGTACTAGAGGGTAGATTTTGTGGA +
Preference number: 5 (lower is better)
Translates to: QRPLEWAPQLAPEDL*QESDTAVLEGRFCG
Trigger: TCCACAAAATCTACCCTCTAGTACGGCAGTGTCTGACTCCTGCCAGAGGTCCTCAGGTGCCAGCTGGGGAGCCCACTCAAGAGGCCTCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000002084.14
ENSMUST00000114461.3
CDS CCA 90 bp CCAGTTCCACCTCATGGCCCCCGTAGAAGGCAATTTCCTCTGAGTTaGCCACCACTCGAGAGTGCATGTAGCGCAGTTCCCCCTTTCGCC +
Preference number: 5 (lower is better)
Translates to: PVPPHGPRRRQFPLS*PPLESACSAVPPFA
Trigger: GGCGAAAGGGGGAACTGCGCTACATGCACTCTCGAGTGGTGGCCAACTCAGAGGAAATTGCCTTCTACGGGGGCCATGAGGTGGAACTGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000002084.14
ENSMUST00000114461.3
CDS-3UTR CAA 90 bp GAGTGGGAGGGCCAGGGCTATATTCTCTTCATGGCTCAGGAGGAACTCTGTCCTCGGTTCATGCCAGCCTaGGTTGCGGTGGCTCCAGAG +
Preference number: 5 (lower is better)
Translates to: EWEGQGYILFMAQEELCPRFMPA*VAVAPE
Trigger: CTCTGGAGCCACCGCAACCAAGGCTGGCATGAACCG...AGGACAGAGTTCCTCCTGAGCCATGAAGAGAATATAGCCCTGGCCCTCCCACTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002084.14
CDS-3UTR CAA 90 bp TGGGTAACCATGGGGAAGGGCACACTTTGGGCCCTGTCTAATCCTGGGCCCCATATCCACAACTTGGCCTaGGATCTTCAGGGGCCCCTC +
Preference number: 5 (lower is better)
Translates to: WVTMGKGTLWALSNPGPHIHNLA*DLQGPL
Trigger: GAGGGGCCCCTGAAGATCCAAGGCCAAGTTGTGGAT...ATGGGGCCCAGGATTAGACAGGGCCCAAAGTGTGCCCTTCCCCATGGTTACCCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000002084.14
CDS-3UTR CAA 90 bp GGAAGGGCACACTTTGGGCCCTGTCTAATCCTGGGCCCCATTAGGCTGTTTTCAGCACGATGCCCAGGATaGCTTCCAGCTGCTGCTCCG +
Preference number: 5 (lower is better)
Translates to: GRAHFGPCLILGPIRLFSARCPG*LPAAAP
Trigger: CGGAGCAGCAGCTGGAAGCAATCCTGGGCATCGTGC...TGAAAACAGCCTAATGGGGCCCAGGATTAGACAGGGCCCAAAGTGTGCCCTTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000002084.14
CDS-3UTR CAA 90 bp CAGTGTGTCCCCATTCATATCTACCTGTCCCAGAGTGGGGTCTTCAGGGAATGCTCCTCCACCCTGATGTaGAGGCTGGCCACCACCACC +
Preference number: 5 (lower is better)
Translates to: QCVPIHIYLSQSGVFRECSSTLM*RLATTT
Trigger: GGTGGTGGTGGCCAGCCTCAACATCAGGGTGGAGGA...GCATTCCCTGAAGACCCCACTCTGGGACAGGTAGATATGAATGGGGACACACTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000002084.14
CDS GCA 90 bp ATGGCACTGTTGATGAAAGTGGCAGGAAGGGCGATGAGGAGCCACTaGAGCAGTTGCCAGCTAAAGGCCCGCGGGTCCTTACGTACAATG +
Preference number: 5 (lower is better)
Translates to: MALLMKVAGRAMRSH*SSCQLKARGSLRTM
Trigger: CATTGTACGTAAGGACCCGCGGGCCTTTAGCTGGCAACTGCTGCAGTGGCTCCTCATCGCCCTTCCTGCCACTTTCATCAACAGTGCCAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000002084.14
ENSMUST00000114461.3
CDS CCA 90 bp CACGGACATGTAGGGCCTCTGAGGGATATAGAACATGCGCTGGGGTaGGGGCTTATAGAGTACACCACTGTATGTGGGCCAGAGTCCACC +
Preference number: 5 (lower is better)
Translates to: HGHVGPLRDIEHALG*GLIEYTTVCGPEST
Trigger: GGTGGACTCTGGCCCACATACAGTGGTGTACTCTATAAGCCCCCACCCCAGCGCATGTTCTATATCCCTCAGAGGCCCTACATGTCCGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000002084.14
CDS-3UTR CAA 90 bp AAACTGGCCTCAAACTCACAGAGATTTACCCACCTCTGCTTCCCAAGTGCTGGGCGGTTCATGCCAGCCTaGGTTGCGGTGGCTCCAGAG +
Preference number: 5 (lower is better)
Translates to: KLASNSQRFTHLCFPSAGRFMPA*VAVAPE
Trigger: CTCTGGAGCCACCGCAACCAAGGCTGGCATGAACCG...CCCAGCACTTGGGAAGCAGAGGTGGGTAAATCTCTGTGAGTTTGAGGCCAGTTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114461.3
CDS-3UTR CAA 90 bp GAAGGGACCACCCAGTCACCTCCTGTGCTGGCAGGGTACTCATGTTGGCAATTTAAGGCTCGAAGCACGTaGGCTGTGAGGAACACCACC +
Preference number: 5 (lower is better)
Translates to: EGTTQSPPVLAGYSCWQFKARST*AVRNTT
Trigger: GGTGGTGTTCCTCACAGCCAACGTGCTTCGAGCCTT...AAATTGCCAACATGAGTACCCTGCCAGCACAGGAGGTGACTGGGTGGTCCCTTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002084.14
CDS-3UTR CAA 90 bp GAGGAGTGGGAGGGCCAGGGCTATATTCTCTTCATGGCTCAGGAGGAACTCTGTCGGAACAGAGAACTCTaGCCACAGCCATTGGGGCCT +
Preference number: 5 (lower is better)
Translates to: EEWEGQGYILFMAQEELCRNREL*PQPLGP
Trigger: AGGCCCCAATGGCTGTGGCAAGAGTTCTCTGTTCCG...ACAGAGTTCCTCCTGAGCCATGAAGAGAATATAGCCCTGGCCCTCCCACTCCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002084.14
CDS-3UTR CAA 90 bp CAGCTTCACCTTGGCCTATCTTCCACGTGGCTGGGGACAATGTTGCTGCTAGCAGCAATTTCCTCTGAGTaGGCCACCACTCGAGAGTGC +
Preference number: 5 (lower is better)
Translates to: QLHLGLSSTWLGTMLLLAAISSE*ATTREC
Trigger: GCACTCTCGAGTGGTGGCCAACTCAGAGGAAATTGC...TGCTAGCAGCAACATTGTCCCCAGCCACGTGGAAGATAGGCCAAGGTGAAGCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114461.3
CDS CCA 90 bp GAGTGTAGGAGGTCACAGCCACATCCAGGAGTGGCTTGGTCAGGTTaGAATAAAGGTGGGCTACAGAGGCAGCAAAGGCTACCACATCCT +
Preference number: 5 (lower is better)
Translates to: ECRRSQPHPGVAWSG*NKGGLQRQQRLPHP
Trigger: AGGATGTGGTAGCCTTTGCTGCCTCTGTAGCCCACCTTTATTCCAACCTGACCAAGCCACTCCTGGATGTGGCTGTGACCTCCTACACTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000002084.14
ENSMUST00000114461.3
CDS CCA 90 bp AGAACATGCGCTGGGGTGGGGGCTTATAGAGTACACCACTGTATGTaGGCCAGAGTCCACCTAGGATTCGGAACAGAGAACTCTTGCCAC +
Preference number: 5 (lower is better)
Translates to: RTCAGVGAYRVHHCM*ARVHLGFGTENSCH
Trigger: GTGGCAAGAGTTCTCTGTTCCGAATCCTAGGTGGACTCTGGCCCACATACAGTGGTGTACTCTATAAGCCCCCACCCCAGCGCATGTTCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000002084.14
CDS-3UTR CAA 90 bp CTTAAGGTCACTCACTCCACTCTCCAATTTATCTTTGGTTTCAAGTACCCAGCCGGCTCCAGAGGCCTCTaGAGTGGGCTCCCCAGCTGG +
Preference number: 5 (lower is better)
Translates to: LKVTHSTLQFIFGFKYPAGSRGL*SGLPSW
Trigger: CCAGCTGGGGAGCCCACTCAAGAGGCCTCTGGAGCC...GGCTGGGTACTTGAAACCAAAGATAAATTGGAGAGTGGAGTGAGTGACCTTAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114461.3
CDS-3UTR CAA 90 bp AGTGGGAGGGCCAGGGCTATATTCTCTTCATGGCTCAGGAGGAACTCTGTCCTTGCAATTTCCTCTGAGTaGGCCACCACTCGAGAGTGC +
Preference number: 5 (lower is better)
Translates to: SGRARAIFSSWLRRNSVLAISSE*ATTREC
Trigger: GCACTCTCGAGTGGTGGCCAACTCAGAGGAAATTGC...AAGGACAGAGTTCCTCCTGAGCCATGAAGAGAATATAGCCCTGGCCCTCCCACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002084.14
CDS-3UTR CAA 90 bp AGTGGGAGGGCCAGGGCTATATTCTCTTCATGGCTCAGGAGGAACTCTGTCCTTCTCCACATCCACAACTaGGCCTTGGATCTTCAGGGG +
Preference number: 5 (lower is better)
Translates to: SGRARAIFSSWLRRNSVLLHIHN*ALDLQG
Trigger: CCCCTGAAGATCCAAGGCCAAGTTGTGGATGTGGAG...AAGGACAGAGTTCCTCCTGAGCCATGAAGAGAATATAGCCCTGGCCCTCCCACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002084.14
CDS-3UTR CAA 90 bp GGAGTGGGAGGGCCAGGGCTATATTCTCTTCATGGCTCAGGAGGAACTCTGTCCGCTGCTTGGAAGATCTaGCCTTCCACATCAATGCTC +
Preference number: 5 (lower is better)
Translates to: GVGGPGLYSLHGSGGTLSAAWKI*PSTSML
Trigger: GAGCATTGATGTGGAAGGCAAGATCTTCCAAGCAGC...GGACAGAGTTCCTCCTGAGCCATGAAGAGAATATAGCCCTGGCCCTCCCACTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002084.14
CDS-3UTR CAA 90 bp AGACCAAACTGGCCTCAAACTCACAGAGATTTACCCACCTCTGCTTCCCAAGTGAAGGCTCGAAGCACGTaGGCTGTGAGGAACACCACC +
Preference number: 5 (lower is better)
Translates to: RPNWPQTHRDLPTSASQVKARST*AVRNTT
Trigger: GGTGGTGTTCCTCACAGCCAACGTGCTTCGAGCCTT...CACTTGGGAAGCAGAGGTGGGTAAATCTCTGTGAGTTTGAGGCCAGTTTGGTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114461.3
CDS-3UTR CAA 90 bp CCTTCTTGGGTAACCATGGGGAAGGGCACACTTTGGGCCCTGTCTAATCCTGGGTCAAGCAGGATGAGGTaGATCTGTGAAGCTAGGTCT +
Preference number: 5 (lower is better)
Translates to: PSWVTMGKGTLWALSNPGSSRMR*ICEARS
Trigger: AGACCTAGCTTCACAGATCAACCTCATCCTGCTTGA...CCCAGGATTAGACAGGGCCCAAAGTGTGCCCTTCCCCATGGTTACCCAAGAAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002084.14
CDS-3UTR CAA 90 bp TCTCCAATTTATCTTTGGTTTCAAGTACCCAGCCCAGAGTTCAGGGAAGCCAGGATCCACAACTTGGCCTaGGATCTTCAGGGGCCCCTC +
Preference number: 5 (lower is better)
Translates to: SPIYLWFQVPSPEFREARIHNLA*DLQGPL
Trigger: GAGGGGCCCCTGAAGATCCAAGGCCAAGTTGTGGAT...CCTGGCTTCCCTGAACTCTGGGCTGGGTACTTGAAACCAAAGATAAATTGGAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000114461.3
CDS GCA 90 bp CCTCTGTCAGAGACTGATCAGGGTTTCGAAGTCGTCCATCCATGTTaGTTACTCGGTAGTAAGTCTGTTGGGAGAAGTAGAGTCCATAGG +
Preference number: 5 (lower is better)
Translates to: PLSETDQGFEVVHPC*LLGSKSVGRSRVHR
Trigger: CCTATGGACTCTACTTCTCCCAACAGACTTACTACCGAGTAAGCAACATGGATGGACGACTTCGAAACCCTGATCAGTCTCTGACAGAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000002084.14
ENSMUST00000114461.3
CDS-3UTR CAA 90 bp CTTAAGGTCACTCACTCCACTCTCCAATTTATCTTTGGTTTCAAGTACCCAGCCCTCCACATCCACAACTaGGCCTTGGATCTTCAGGGG +
Preference number: 5 (lower is better)
Translates to: LKVTHSTLQFIFGFKYPALHIHN*ALDLQG
Trigger: CCCCTGAAGATCCAAGGCCAAGTTGTGGATGTGGAG...GGCTGGGTACTTGAAACCAAAGATAAATTGGAGAGTGGAGTGAGTGACCTTAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114461.3
CDS-3UTR CAA 90 bp ATATCTACCTGTCCCAGAGTGGGGTCTTCAGGGAATGCAGGTAATTGGCTAGGATCGGTAGTAAGTCTGTaGGGAGAAGTAGAGTCCATA +
Preference number: 5 (lower is better)
Translates to: ISTCPRVGSSGNAGNWLGSVVSL*GEVESI
Trigger: TATGGACTCTACTTCTCCCAACAGACTTACTACCGA...TCCTAGCCAATTACCTGCATTCCCTGAAGACCCCACTCTGGGACAGGTAGATAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002084.14
CDS-3UTR CAA 90 bp CACAGAGATTTACCCACCTCTGCTTCCCAAGTGCTGGGATTAAAGGTATGTGTCGGAATGCTTCTCTACTaGACCTACCCTGATGTTGAG +
Preference number: 5 (lower is better)
Translates to: HRDLPTSASQVLGLKVCVGMLLY*TYPDVE
Trigger: CTCAACATCAGGGTAGGTCAAGTAGAGAAGCATTCC...GACACATACCTTTAATCCCAGCACTTGGGAAGCAGAGGTGGGTAAATCTCTGTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114461.3
CDS-3UTR CAA 90 bp CACAGAGATTTACCCACCTCTGCTTCCCAAGTGCTGGGATTAAAGGTATGTGTCTCGGTAGTAAGTCTGTaGGGAGAAGTAGAGTCCATA +
Preference number: 5 (lower is better)
Translates to: HRDLPTSASQVLGLKVCVSVVSL*GEVESI
Trigger: TATGGACTCTACTTCTCCCAACAGACTTACTACCGA...GACACATACCTTTAATCCCAGCACTTGGGAAGCAGAGGTGGGTAAATCTCTGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114461.3
CDS-3UTR CAA 90 bp AACTTACTATGCAGACCAAACTGGCCTCAAACTCACAGAGATTTACCCACCTCTTCAAGCAGGATGAGGTaGATCTGTGAAGCTAGGTCT +
Preference number: 5 (lower is better)
Translates to: NLLCRPNWPQTHRDLPTSSSRMR*ICEARS
Trigger: AGACCTAGCTTCACAGATCAACCTCATCCTGCTTGA...AGAGGTGGGTAAATCTCTGTGAGTTTGAGGCCAGTTTGGTCTGCATAGTAAGTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114461.3
CDS CCA 72 bp CAGCCTTGGTTGCGGTGGCTCCAGAGGCCTCTTGAGTaGGCTCCCCAGCTGGCACCTGAGGACCTCTGGCAG +
Preference number: 6 (lower is better)
Translates to: QPWLRWLQRPLE*APQLAPEDLWQ
Trigger: CTGCCAGAGGTCCTCAGGTGCCAGCTGGGGAGCCCACTCAAGAGGCCTCTGGAGCCACCGCAACCAAGGCTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002084.14
ENSMUST00000114461.3
CDS CAA 90 bp GCGCCAAGAGCCGCTGCAGGAATACCCGGTTCATGCCAGCCTTGGTaGCGGTGGCTCCAGAGGCCTCTTGAGTGGGCTCCCCAGCTGGCA +
Preference number: 6 (lower is better)
Translates to: APRAAAGIPGSCQPW*RWLQRPLEWAPQLA
Trigger: TGCCAGCTGGGGAGCCCACTCAAGAGGCCTCTGGAGCCACCGCAACCAAGGCTGGCATGAACCGGGTATTCCTGCAGCGGCTCTTGGCGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002084.14
ENSMUST00000114461.3
CDS GCA 72 bp CCGCTGCAGGAATACCCGGTTCATGCCAGCCTTGGTTaGGGTGGCTCCAGAGGCCTCTTGAGTGGGCTCCCC +
Preference number: 6 (lower is better)
Translates to: PLQEYPVHASLG*GGSRGLLSGLP
Trigger: GGGGAGCCCACTCAAGAGGCCTCTGGAGCCACCGCAACCAAGGCTGGCATGAACCGGGTATTCCTGCAGCGG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000002084.14
ENSMUST00000114461.3
CDS GCA 72 bp CGGGGGAACAGCAGCCTCAGGAGCGCCAAGAGCCGCTaGAGGAATACCCGGTTCATGCCAGCCTTGGTTGCG +
Preference number: 6 (lower is better)
Translates to: RGNSSLRSAKSR*RNTRFMPALVA
Trigger: CGCAACCAAGGCTGGCATGAACCGGGTATTCCTGCAGCGGCTCTTGGCGCTCCTGAGGCTGCTGTTCCCCCG
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000002084.14
ENSMUST00000114461.3
CDS CAA 72 bp GCCGCTGCAGGAATACCCGGTTCATGCCAGCCTTGGTaGCGGTGGCTCCAGAGGCCTCTTGAGTGGGCTCCC +
Preference number: 6 (lower is better)
Translates to: AAAGIPGSCQPW*RWLQRPLEWAP
Trigger: GGGAGCCCACTCAAGAGGCCTCTGGAGCCACCGCAACCAAGGCTGGCATGAACCGGGTATTCCTGCAGCGGC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000002084.14
ENSMUST00000114461.3
CDS CAA 90 bp TACCCGGTTCATGCCAGCCTTGGTTGCGGTGGCTCCAGAGGCCTCTaGAGTGGGCTCCCCAGCTGGCACCTGAGGACCTCTGGCAGGAGT +
Preference number: 6 (lower is better)
Translates to: YPVHASLGCGGSRGL*SGLPSWHLRTSGRS
Trigger: ACTCCTGCCAGAGGTCCTCAGGTGCCAGCTGGGGAGCCCACTCAAGAGGCCTCTGGAGCCACCGCAACCAAGGCTGGCATGAACCGGGTA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002084.14
ENSMUST00000114461.3
CDS GCA 72 bp GGAGCGCCAAGAGCCGCTGCAGGAATACCCGGTTCATaGCAGCCTTGGTTGCGGTGGCTCCAGAGGCCTCTT +
Preference number: 6 (lower is better)
Translates to: GAPRAAAGIPGS*QPWLRWLQRPL
Trigger: AAGAGGCCTCTGGAGCCACCGCAACCAAGGCTGGCATGAACCGGGTATTCCTGCAGCGGCTCTTGGCGCTCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000002084.14
ENSMUST00000114461.3
CDS CCA 72 bp GCAGGAATACCCGGTTCATGCCAGCCTTGGTTGCGGTaGCTCCAGAGGCCTCTTGAGTGGGCTCCCCAGCTG +
Preference number: 6 (lower is better)
Translates to: AGIPGSCQPWLR*LQRPLEWAPQL
Trigger: CAGCTGGGGAGCCCACTCAAGAGGCCTCTGGAGCCACCGCAACCAAGGCTGGCATGAACCGGGTATTCCTGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002084.14
ENSMUST00000114461.3
CDS GCA 72 bp CCCGCGGGTCCTTACGTACAATGCAGCGGGCCAGTCTaGCGTCCAGGCGGGCAACATACACAGACAGGAAAG +
Preference number: 6 (lower is better)
Translates to: PAGPYVQCSGPV*RPGGQHTQTGK
Trigger: CTTTCCTGTCTGTGTATGTTGCCCGCCTGGACGGCAGACTGGCCCGCTGCATTGTACGTAAGGACCCGCGGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000002084.14
ENSMUST00000114461.3
CDS GCA 72 bp CGGAGATGCACGATGCCCAGGATTGCTTCCAGCTGCTaGTCCGAGCAGCCCTTCCTCCGCATGTCTTCCGCA +
Preference number: 6 (lower is better)
Translates to: RRCTMPRIASSC*SEQPFLRMSSA
Trigger: TGCGGAAGACATGCGGAGGAAGGGCTGCTCGGAGCAGCAGCTGGAAGCAATCCTGGGCATCGTGCATCTCCG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002084.14
CDS GCA 72 bp TGGCGGAGATGCACGATGCCCAGGATTGCTTCCAGCTaGTGCTCCGAGCAGCCCTTCCTCCGCATGTCTTCC +
Preference number: 6 (lower is better)
Translates to: WRRCTMPRIASS*CSEQPFLRMSS
Trigger: GGAAGACATGCGGAGGAAGGGCTGCTCGGAGCAGCAGCTGGAAGCAATCCTGGGCATCGTGCATCTCCGCCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002084.14
CDS CAA 90 bp TCTGCCACTAGCTCCCCAAACTTGGGAGAGAAGGCTCGAAGCACGTaGGCTGTGAGGAACACCACCAGGCCAGCGATGGCTGAGGGCCAG +
Preference number: 6 (lower is better)
Translates to: SATSSPNLGEKARST*AVRNTTRPAMAEGQ
Trigger: CTGGCCCTCAGCCATCGCTGGCCTGGTGGTGTTCCTCACAGCCAACGTGCTTCGAGCCTTCTCTCCCAAGTTTGGGGAGCTAGTGGCAGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002084.14
ENSMUST00000114461.3
CDS TCA 72 bp CAAACTTGGGAGAGAAGGCTCGAAGCACGTTGGCTGTaGGGAACACCACCAGGCCAGCGATGGCTGAGGGCC +
Preference number: 6 (lower is better)
Translates to: QTWERRLEARWL*GTPPGQRWLRA
Trigger: GGCCCTCAGCCATCGCTGGCCTGGTGGTGTTCCTCACAGCCAACGTGCTTCGAGCCTTCTCTCCCAAGTTTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000002084.14
ENSMUST00000114461.3
CDS GCA 72 bp GTGGCAGGAAGGGCGATGAGGAGCCACTGCAGCAGTTaGCAGCTAAAGGCCCGCGGGTCCTTACGTACAATG +
Preference number: 6 (lower is better)
Translates to: VAGRAMRSHCSS*QLKARGSLRTM
Trigger: CATTGTACGTAAGGACCCGCGGGCCTTTAGCTGGCAACTGCTGCAGTGGCTCCTCATCGCCCTTCCTGCCAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000002084.14
ENSMUST00000114461.3
CDS CAA 90 bp GTTGATGAAAGTGGCAGGAAGGGCGATGAGGAGCCACTGCAGCAGTaGCCAGCTAAAGGCCCGCGGGTCCTTACGTACAATGCAGCGGGC +
Preference number: 6 (lower is better)
Translates to: VDESGRKGDEEPLQQ*PAKGPRVLTYNAAG
Trigger: GCCCGCTGCATTGTACGTAAGGACCCGCGGGCCTTTAGCTGGCAACTGCTGCAGTGGCTCCTCATCGCCCTTCCTGCCACTTTCATCAAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000002084.14
ENSMUST00000114461.3
CDS GCA 72 bp TTGATGAAAGTGGCAGGAAGGGCGATGAGGAGCCACTaGAGCAGTTGCCAGCTAAAGGCCCGCGGGTCCTTA +
Preference number: 6 (lower is better)
Translates to: LMKVAGRAMRSH*SSCQLKARGSL
Trigger: TAAGGACCCGCGGGCCTTTAGCTGGCAACTGCTGCAGTGGCTCCTCATCGCCCTTCCTGCCACTTTCATCAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000002084.14
ENSMUST00000114461.3
CDS CCA 72 bp CCTCATGGCCCCCGTAGAAGGCAATTTCCTCTGAGTTaGCCACCACTCGAGAGTGCATGTAGCGCAGTTCCC +
Preference number: 6 (lower is better)
Translates to: PHGPRRRQFPLS*PPLESACSAVP
Trigger: GGGAACTGCGCTACATGCACTCTCGAGTGGTGGCCAACTCAGAGGAAATTGCCTTCTACGGGGGCCATGAGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000002084.14
ENSMUST00000114461.3
CDS GCA 72 bp CCACGGACATGTAGGGCCTCTGAGGGATATAGAACATaGGCTGGGGTGGGGGCTTATAGAGTACACCACTGT +
Preference number: 6 (lower is better)
Translates to: PRTCRASEGYRT*AGVGAYRVHHC
Trigger: ACAGTGGTGTACTCTATAAGCCCCCACCCCAGCGCATGTTCTATATCCCTCAGAGGCCCTACATGTCCGTGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000002084.14
CDS CCA 72 bp GCTGGGGTGGGGGCTTATAGAGTACACCACTGTATGTaGGCCAGAGTCCACCTAGGATTCGGAACAGAGAAC +
Preference number: 6 (lower is better)
Translates to: AGVGAYRVHHCM*ARVHLGFGTEN
Trigger: GTTCTCTGTTCCGAATCCTAGGTGGACTCTGGCCCACATACAGTGGTGTACTCTATAAGCCCCCACCCCAGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000002084.14
CDS CCA 72 bp GTAGGGCCTCTGAGGGATATAGAACATGCGCTGGGGTaGGGGCTTATAGAGTACACCACTGTATGTGGGCCA +
Preference number: 6 (lower is better)
Translates to: VGPLRDIEHALG*GLIEYTTVCGP
Trigger: TGGCCCACATACAGTGGTGTACTCTATAAGCCCCCACCCCAGCGCATGTTCTATATCCCTCAGAGGCCCTAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000002084.14
CDS CCA 72 bp AGGTCACAGCCACATCCAGGAGTGGCTTGGTCAGGTTaGAATAAAGGTGGGCTACAGAGGCAGCAAAGGCTA +
Preference number: 6 (lower is better)
Translates to: RSQPHPGVAWSG*NKGGLQRQQRL
Trigger: TAGCCTTTGCTGCCTCTGTAGCCCACCTTTATTCCAACCTGACCAAGCCACTCCTGGATGTGGCTGTGACCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000002084.14
ENSMUST00000114461.3
CDS TCA 72 bp GAGGCAGCAAAGGCTACCACATCCTCTGTCAGAGACTaGTCAGGGTTTCGAAGTCGTCCATCCATGTTGCTT +
Preference number: 6 (lower is better)
Translates to: EAAKATTSSVRD*SGFRSRPSMLL
Trigger: AAGCAACATGGATGGACGACTTCGAAACCCTGATCAGTCTCTGACAGAGGATGTGGTAGCCTTTGCTGCCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000002084.14
ENSMUST00000114461.3
CDS GCA 72 bp GGTGTGATGATAGGGATGTTCTCACAGATGATCCCCTaGTCCACATCCACAACTTGGCCTTGGATCTTCAGG +
Preference number: 6 (lower is better)
Translates to: GVMIGMFSQMIP*STSTTWPWIFR
Trigger: CCTGAAGATCCAAGGCCAAGTTGTGGATGTGGAGCAGGGGATCATCTGTGAGAACATCCCTATCATCACACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002084.14
ENSMUST00000114461.3
CDS GCA 72 bp GAGACTGATCAGGGTTTCGAAGTCGTCCATCCATGTTaGTTACTCGGTAGTAAGTCTGTTGGGAGAAGTAGA +
Preference number: 6 (lower is better)
Translates to: ETDQGFEVVHPC*LLGSKSVGRSR
Trigger: TCTACTTCTCCCAACAGACTTACTACCGAGTAAGCAACATGGATGGACGACTTCGAAACCCTGATCAGTCTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000002084.14
ENSMUST00000114461.3
CDS CAA 72 bp TCCTCTAGATCTCCTGTCCTCTTAAAACGACAGTGTTaGACATCTTCAAATACCTGGAACATCTCGTACACC +
Preference number: 6 (lower is better)
Translates to: SSRSPVLLKRQC*TSSNTWNISYT
Trigger: GGTGTACGAGATGTTCCAGGTATTTGAAGATGTCAAACACTGTCGTTTTAAGAGGACAGGAGATCTAGAGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002084.14
ENSMUST00000114461.3