Pregenerated sensors for ABCB4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000042476Ensembl transcript IDs: ENSMUST00000003717.13, ENSMUST00000196067.2
Found 25 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | CCAAAGATAGCTATCATCTCAGACAGGATGATGGAGAAAGCCGGCTaGAGGGCTCCATTGGCAATGGCACAGACTGTTCCCACCACAAAG | + |
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Preference number: 5 (lower is better) Translates to: PKIAIISDRMMEKAG*RAPLAMAQTVPTTK Trigger: CTTTGTGGTGGGAACAGTCTGTGCCATTGCCAATGGAGCCCTCCAGCCGGCTTTCTCCATCATCCTGTCTGAGATGATAGCTATCTTTGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000003717.13 ENSMUST00000196067.2 |
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| CDS GCA 90 bp | AGGACTCCTAGGCCCAAGAAGACCAGGGAGAACATGTTACACTTTTaGTGCTTCACTGCGTCATCCCCAGGGCCAAAGATAGCTATCATC | + |
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Preference number: 5 (lower is better) Translates to: RTPRPKKTRENMLHF*CFTASSPGPKIAII Trigger: GATGATAGCTATCTTTGGCCCTGGGGATGACGCAGTGAAGCAGCAAAAGTGTAACATGTTCTCCCTGGTCTTCTTGGGCCTAGGAGTCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000003717.13 ENSMUST00000196067.2 |
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| CDS GCA 90 bp | GCCCAAGAAGACCAGGGAGAACATGTTACACTTTTGCTGCTTCACTaGGTCATCCCCAGGGCCAAAGATAGCTATCATCTCAGACAGGAT | + |
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Preference number: 5 (lower is better) Translates to: AQEDQGEHVTLLLLH*VIPRAKDSYHLRQD Trigger: ATCCTGTCTGAGATGATAGCTATCTTTGGCCCTGGGGATGACGCAGTGAAGCAGCAAAAGTGTAACATGTTCTCCCTGGTCTTCTTGGGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000003717.13 ENSMUST00000196067.2 |
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| CDS GCA 90 bp | ATACATGAATGCTTGGGAGATGCTAAAAGTGATGCCGTAGATGTGTaGCTTCCGCACCGAATTCCTGTAAGGTCCATGCAATTTTTCAAC | + |
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Preference number: 5 (lower is better) Translates to: IHECLGDAKSDAVDV*LPHRIPVRSMQFFN Trigger: GTTGAAAAATTGCATGGACCTTACAGGAATTCGGTGCGGAAGGCACACATCTACGGCATCACTTTTAGCATCTCCCAAGCATTCATGTAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000003717.13 |
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| CDS TCA 90 bp | GGCACGTTTGCATCAAGTTCATTGGTTTCTTCATCCAGCCTATTCTaGTGTGGACTTTTAAGACTTTTCTTTGTAGAATTCCTAAATATG | + |
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Preference number: 5 (lower is better) Translates to: GTFASSSLVSSSSLF*CGLLRLFFVEFLNM Trigger: CATATTTAGGAATTCTACAAAGAAAAGTCTTAAAAGTCCACATCAGAATAGGCTGGATGAAGAAACCAATGAACTTGATGCAAACGTGCC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000003717.13 ENSMUST00000196067.2 |
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| CDS CCA 90 bp | GTTTGCATCAAGTTCATTGGTTTCTTCATCCAGCCTATTCTGATGTaGACTTTTAAGACTTTTCTTTGTAGAATTCCTAAATATGCGTGC | + |
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Preference number: 5 (lower is better) Translates to: VCIKFIGFFIQPILM*TFKTFLCRIPKYAC Trigger: GCACGCATATTTAGGAATTCTACAAAGAAAAGTCTTAAAAGTCCACATCAGAATAGGCTGGATGAAGAAACCAATGAACTTGATGCAAAC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000003717.13 ENSMUST00000196067.2 |
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| CDS GCA 72 bp | GCAGCTGGACAGTTGTGCTTTTTCCACAGCCGCTGTTaGCAACCAGAGCCACTGTCTGTCCACTCTTCACCT | + |
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Preference number: 6 (lower is better) Translates to: AAGQLCFFHSRC*QPEPLSVHSSP Trigger: AGGTGAAGAGTGGACAGACAGTGGCTCTGGTTGGCAACAGCGGCTGTGGAAAAAGCACAACTGTCCAGCTGC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000003717.13 ENSMUST00000196067.2 |
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| CDS CCA 72 bp | GCTATCATCTCAGACAGGATGATGGAGAAAGCCGGCTaGAGGGCTCCATTGGCAATGGCACAGACTGTTCCC | + |
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Preference number: 6 (lower is better) Translates to: AIISDRMMEKAG*RAPLAMAQTVP Trigger: GGGAACAGTCTGTGCCATTGCCAATGGAGCCCTCCAGCCGGCTTTCTCCATCATCCTGTCTGAGATGATAGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000003717.13 ENSMUST00000196067.2 |
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| CDS CAA 72 bp | AGCAGCTGGACAGTTGTGCTTTTTCCACAGCCGCTGTaGCCAACCAGAGCCACTGTCTGTCCACTCTTCACC | + |
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Preference number: 6 (lower is better) Translates to: SSWTVVLFPQPL*PTRATVCPLFT Trigger: GGTGAAGAGTGGACAGACAGTGGCTCTGGTTGGCAACAGCGGCTGTGGAAAAAGCACAACTGTCCAGCTGCT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000003717.13 ENSMUST00000196067.2 |
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| CDS GCA 72 bp | CTTGCATTAGCGAAAGCATCAATACAGGGGGCAGCCTaGCCCACACTGAAAGCCCCGATGAGGATTGAGAAG | + |
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Preference number: 6 (lower is better) Translates to: LALAKASIQGAA*PTLKAPMRIEK Trigger: CTTCTCAATCCTCATCGGGGCTTTCAGTGTGGGGCAGGCTGCCCCCTGTATTGATGCTTTCGCTAATGCAAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000003717.13 ENSMUST00000196067.2 |
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| CDS GCA 72 bp | AGGCCCAAGAAGACCAGGGAGAACATGTTACACTTTTaGTGCTTCACTGCGTCATCCCCAGGGCCAAAGATA | + |
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Preference number: 6 (lower is better) Translates to: RPKKTRENMLHF*CFTASSPGPKI Trigger: TATCTTTGGCCCTGGGGATGACGCAGTGAAGCAGCAAAAGTGTAACATGTTCTCCCTGGTCTTCTTGGGCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000003717.13 ENSMUST00000196067.2 |
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| CDS CAA 90 bp | CTTATCAGGCCACAGCCCTTCTCCACTGTAGCTGTCAATCAGAGGTaGTCTTTCAAACAGGCTGAACAAGTATGCTGCAGACAGCTTGGC | + |
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Preference number: 6 (lower is better) Translates to: LIRPQPFSTVAVNQR*SFKQAEQVCCRQLG Trigger: GCCAAGCTGTCTGCAGCATACTTGTTCAGCCTGTTTGAAAGACAACCTCTGATTGACAGCTACAGTGGAGAAGGGCTGTGGCCTGATAAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003717.13 |
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| CDS TCA 72 bp | CCAAAGACTATCATCATGAGGGGAAGACCTGATCCATaGGCTATGGCCATGAGGGTGCCCAGGAACATAAAC | + |
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Preference number: 6 (lower is better) Translates to: PKTIIMRGRPDP*AMAMRVPRNIN Trigger: GTTTATGTTCCTGGGCACCCTCATGGCCATAGCTCATGGATCAGGTCTTCCCCTCATGATGATAGTCTTTGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003717.13 ENSMUST00000196067.2 |
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| CDS GCA 72 bp | GCCATGAGGGTGCCCAGGAACATAAACAATTTATCCTaGCAGTCAGAGTATCGGAACAGTGTCAACAGGCCA | + |
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Preference number: 6 (lower is better) Translates to: AMRVPRNINNLS*QSEYRNSVNRP Trigger: TGGCCTGTTGACACTGTTCCGATACTCTGACTGGCAGGATAAATTGTTTATGTTCCTGGGCACCCTCATGGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000003717.13 ENSMUST00000196067.2 |
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| CDS GCA 72 bp | TCCCTTAGACACCTGACGTTAAAGTTCCTGATATCCTaGCCATCGATGCTAATCTTACCCTCTGTGGGGTCG | + |
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Preference number: 6 (lower is better) Translates to: SLRHLTLKFLIS*PSMLILPSVGS Trigger: CGACCCCACAGAGGGTAAGATTAGCATCGATGGGCAGGATATCAGGAACTTTAACGTCAGGTGTCTAAGGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003717.13 ENSMUST00000196067.2 |
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| CDS GCA 72 bp | GACCAGGGAGAACATGTTACACTTTTGCTGCTTCACTaGGTCATCCCCAGGGCCAAAGATAGCTATCATCTC | + |
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Preference number: 6 (lower is better) Translates to: DQGEHVTLLLLH*VIPRAKDSYHL Trigger: GAGATGATAGCTATCTTTGGCCCTGGGGATGACGCAGTGAAGCAGCAAAAGTGTAACATGTTCTCCCTGGTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000003717.13 ENSMUST00000196067.2 |
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| CDS GCA 72 bp | TGCTTGGGAGATGCTAAAAGTGATGCCGTAGATGTGTaGCTTCCGCACCGAATTCCTGTAAGGTCCATGCAA | + |
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Preference number: 6 (lower is better) Translates to: CLGDAKSDAVDV*LPHRIPVRSMQ Trigger: TTGCATGGACCTTACAGGAATTCGGTGCGGAAGGCACACATCTACGGCATCACTTTTAGCATCTCCCAAGCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003717.13 |
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| CDS CAA 72 bp | TCACTGATTTTGGAGACGTCATCTGTTAGACGTGTGTaGAGTTCAGTGGTGCCCTTGATGTCAAACCAGCCC | + |
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Preference number: 6 (lower is better) Translates to: SLILETSSVRRV*SSVVPLMSNQP Trigger: GGGCTGGTTTGACATCAAGGGCACCACTGAACTCAACACACGTCTAACAGATGACGTCTCCAAAATCAGTGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003717.13 ENSMUST00000196067.2 |
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| CDS CAA 72 bp | CCACAGCCCTTCTCCACTGTAGCTGTCAATCAGAGGTaGTCTTTCAAACAGGCTGAACAAGTATGCTGCAGA | + |
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Preference number: 6 (lower is better) Translates to: PQPFSTVAVNQR*SFKQAEQVCCR Trigger: TCTGCAGCATACTTGTTCAGCCTGTTTGAAAGACAACCTCTGATTGACAGCTACAGTGGAGAAGGGCTGTGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003717.13 |
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| CDS TCA 72 bp | TTTCTTTATTTGTCGGCCAGCTGCCAAAGTCCAGAATaGGACTTGGATATAGGCAGCCACAAGAACTCCACC | + |
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Preference number: 6 (lower is better) Translates to: FLYLSASCQSPE*DLDIGSHKNST Trigger: GGTGGAGTTCTTGTGGCTGCCTATATCCAAGTCTCATTCTGGACTTTGGCAGCTGGCCGACAAATAAAGAAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000003717.13 ENSMUST00000196067.2 |
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| CDS GCA 72 bp | CAGAGGTTGTCTTTCAAACAGGCTGAACAAGTATGCTaGAGACAGCTTGGCTTTTGCATAGTCCGGAGCAAA | + |
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Preference number: 6 (lower is better) Translates to: QRLSFKQAEQVC*RQLGFCIVRSK Trigger: TTTGCTCCGGACTATGCAAAAGCCAAGCTGTCTGCAGCATACTTGTTCAGCCTGTTTGAAAGACAACCTCTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003717.13 |
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| CDS TCA 72 bp | TGTAGCTGTCAATCAGAGGTTGTCTTTCAAACAGGCTaGACAAGTATGCTGCAGACAGCTTGGCTTTTGCAT | + |
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Preference number: 6 (lower is better) Translates to: CSCQSEVVFQTG*TSMLQTAWLLH Trigger: ATGCAAAAGCCAAGCTGTCTGCAGCATACTTGTTCAGCCTGTTTGAAAGACAACCTCTGATTGACAGCTACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003717.13 |
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| CDS CCA 72 bp | TCACTTAGCTCAACTTCAAATTCTTCTGACAGGATCTaGCTTCCTGCTGTCTGCATGTTAACGAGTCTGAAG | + |
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Preference number: 6 (lower is better) Translates to: SLSSTSNSSDRI*LPAVCMLTSLK Trigger: CTTCAGACTCGTTAACATGCAGACAGCAGGAAGCCAGATCCTGTCAGAAGAATTTGAAGTTGAGCTAAGTGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000003717.13 ENSMUST00000196067.2 |
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| CDS TCA 72 bp | GCATCAAGTTCATTGGTTTCTTCATCCAGCCTATTCTaGTGTGGACTTTTAAGACTTTTCTTTGTAGAATTC | + |
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Preference number: 6 (lower is better) Translates to: ASSSLVSSSSLF*CGLLRLFFVEF Trigger: GAATTCTACAAAGAAAAGTCTTAAAAGTCCACATCAGAATAGGCTGGATGAAGAAACCAATGAACTTGATGC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000003717.13 ENSMUST00000196067.2 |
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| CDS CAA 72 bp | GCATATATTAACAAGAAAGCAATACCCATGGAGATGTaGGCTGAGATAGCCTTTTTAATTCCAATCTTTTTG | + |
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Preference number: 6 (lower is better) Translates to: AYINKKAIPMEM*AEIAFLIPIFL Trigger: CAAAAAGATTGGAATTAAAAAGGCTATCTCAGCCAACATCTCCATGGGTATTGCTTTCTTGTTAATATATGC 35% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000003717.13 ENSMUST00000196067.2 |
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