RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ABCB11 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000027048

Ensembl transcript IDs: ENSMUST00000102709.8, ENSMUST00000102710.10, ENSMUST00000180142.2

Found 365 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GAGTCCAGATTACAGAGCAGACTCTGTACAAGGAGCTTTCCCAAATaGAAAAGACAACCCTCTGCCCTAAGGAGGACTCCATGCTCTCTG +
Preference number: 1 (lower is better)
Translates to: ESRLQSRLCTRSFPK*KRQPSALRRTPCSL
Trigger: CAGAGAGCATGGAGTCCTCCTTAGGGCAGAGGGTTGTCTTTTGCATTTGGGAAAGCTCCTTGTACAGAGTCTGCTCTGTAATCTGGACTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
3UTR-3UTR GCA 90 bp GACTCCATGCTCTCTGTCACCAAGTCCTTGATGGAGACAGGGACCAGCTCCTACCCCGCAGCCCTCCTGTaGTTGGCACATCATTATCTG +
Preference number: 2 (lower is better)
Translates to: DSMLSVTKSLMETGTSSYPAALL*LAHHYL
Trigger: CAGATAATGATGTGCCAAGCACAGGAGGGCTGCGGG...GTAGGAGCTGGTCCCTGTCTCCATCAAGGACTTGGTGACAGAGAGCATGGAGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
3UTR-3UTR TCA 90 bp ACATGGTGGCAGGGAATGAAAAGTAGAAGCCCTGGTAAAGAGTCCCTGCTCCACCACCTTTGGCCTCCCTaGGCCTGGGAGATTCCAGAA +
Preference number: 2 (lower is better)
Translates to: TWWQGMKSRSPGKESLLHHLWPP*AWEIPE
Trigger: TTCTGGAATCTCCCAGGCTCAGGGAGGCCAAAGGTG...GTGGAGCAGGGACTCTTTACCAGGGCTTCTACTTTTCATTCCCTGCCACCATGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
3UTR-3UTR TCA 90 bp GACTCCATGCTCTCTGTCACCAAGTCCTTGATGGAGACAGGGACCAGCTCCTACGACTTGAACTCACAGTaGCTCTGGGTTCTCTCCTTC +
Preference number: 2 (lower is better)
Translates to: DSMLSVTKSLMETGTSSYDLNSQ*LWVLSF
Trigger: GAAGGAGAGAACCCAGAGTCACTGTGAGTTCAAGTC...GTAGGAGCTGGTCCCTGTCTCCATCAAGGACTTGGTGACAGAGAGCATGGAGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
3UTR-3UTR CCA 90 bp GACTCCATGCTCTCTGTCACCAAGTCCTTGATGGAGACAGGGACCAGCTCCTACCAGCCCTCCTGTGCTTaGCACATCATTATCTGTATG +
Preference number: 2 (lower is better)
Translates to: DSMLSVTKSLMETGTSSYQPSCA*HIIICM
Trigger: CATACAGATAATGATGTGCCAAGCACAGGAGGGCTG...GTAGGAGCTGGTCCCTGTCTCCATCAAGGACTTGGTGACAGAGAGCATGGAGTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
3UTR-3UTR TCA 90 bp ACATGGTGGCAGGGAATGAAAAGTAGAAGCCCTGGTAAAGAGTCCCTGCTCCACGCTGGCTCAAACAGTTaGGTCCAGATTACAGAGCAG +
Preference number: 2 (lower is better)
Translates to: TWWQGMKSRSPGKESLLHAGSNS*VQITEQ
Trigger: CTGCTCTGTAATCTGGACTCAACTGTTTGAGCCAGC...GTGGAGCAGGGACTCTTTACCAGGGCTTCTACTTTTCATTCCCTGCCACCATGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
3UTR-3UTR GCA 90 bp AGCTGGCTCAAACAGTTGAGTCCAGATTACAGAGCAGACTCTGTACAAGGAGCTCCCGCAGCCCTCCTGTaGTTGGCACATCATTATCTG +
Preference number: 2 (lower is better)
Translates to: SWLKQLSPDYRADSVQGAPAALL*LAHHYL
Trigger: CAGATAATGATGTGCCAAGCACAGGAGGGCTGCGGG...AGCTCCTTGTACAGAGTCTGCTCTGTAATCTGGACTCAACTGTTTGAGCCAGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
3UTR-3UTR TCA 90 bp TCCAGAATGGAAACGTGTTCCTCTCCCTACTCACGGGTGTCAGAGGTAAAGACAGACTTGAACTCACAGTaGCTCTGGGTTCTCTCCTTC +
Preference number: 2 (lower is better)
Translates to: SRMETCSSPYSRVSEVKTDLNSQ*LWVLSF
Trigger: GAAGGAGAGAACCCAGAGTCACTGTGAGTTCAAGTC...TGTCTTTACCTCTGACACCCGTGAGTAGGGAGAGGAACACGTTTCCATTCTGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
3UTR-3UTR TCA 90 bp TTCCTCTCCCTACTCACGGGTGTCAGAGGTAAAGACATTTGCTTCCCTATAGAACTGTCACCAAGTCCTTaGTGGAGACAGGGACCAGCT +
Preference number: 2 (lower is better)
Translates to: FLSLLTGVRGKDICFPIELSPSP*WRQGPA
Trigger: AGCTGGTCCCTGTCTCCATCAAGGACTTGGTGACAG...TTCTATAGGGAAGCAAATGTCTTTACCTCTGACACCCGTGAGTAGGGAGAGGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
3UTR-3UTR TCA 90 bp ACATGGTGGCAGGGAATGAAAAGTAGAAGCCCTGGTAAAGAGTCCCTGCTCCACGCAAATCAGTACCCCTaGCTGTCAACCTCTACTTCT +
Preference number: 2 (lower is better)
Translates to: TWWQGMKSRSPGKESLLHANQYP*LSTSTS
Trigger: AGAAGTAGAGGTTGACAGTCAGGGGTACTGATTTGC...GTGGAGCAGGGACTCTTTACCAGGGCTTCTACTTTTCATTCCCTGCCACCATGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
3UTR-3UTR CCA 90 bp ACATGGTGGCAGGGAATGAAAAGTAGAAGCCCTGGTAAAGAGTCCCTGCTCCACCAGCCCTCCTGTGCTTaGCACATCATTATCTGTATG +
Preference number: 2 (lower is better)
Translates to: TWWQGMKSRSPGKESLLHQPSCA*HIIICM
Trigger: CATACAGATAATGATGTGCCAAGCACAGGAGGGCTG...GTGGAGCAGGGACTCTTTACCAGGGCTTCTACTTTTCATTCCCTGCCACCATGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
3UTR-3UTR TCA 90 bp ACAGAGCAGACTCTGTACAAGGAGCTTTCCCAAATGCAAAAGACAACCCTCTGCGACTTGAACTCACAGTaGCTCTGGGTTCTCTCCTTC +
Preference number: 2 (lower is better)
Translates to: TEQTLYKELSQMQKTTLCDLNSQ*LWVLSF
Trigger: GAAGGAGAGAACCCAGAGTCACTGTGAGTTCAAGTC...GCAGAGGGTTGTCTTTTGCATTTGGGAAAGCTCCTTGTACAGAGTCTGCTCTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
3UTR-3UTR GCA 90 bp CAGAATGGAAACGTGTTCCTCTCCCTACTCACGGGTGTCAGAGGTAAAGACATTCTAAGGAGGACTCCATaGTCTCTGTCACCAAGTCCT +
Preference number: 2 (lower is better)
Translates to: QNGNVFLSLLTGVRGKDILRRTP*SLSPSP
Trigger: AGGACTTGGTGACAGAGAGCATGGAGTCCTCCTTAG...AATGTCTTTACCTCTGACACCCGTGAGTAGGGAGAGGAACACGTTTCCATTCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
3UTR-3UTR CCA 90 bp TCCAGAATGGAAACGTGTTCCTCTCCCTACTCACGGGTGTCAGAGGTAAAGACACTCTTGACCTTGAGCTaGCTCAAACAGTTGAGTCCA +
Preference number: 2 (lower is better)
Translates to: SRMETCSSPYSRVSEVKTLLTLS*LKQLSP
Trigger: TGGACTCAACTGTTTGAGCCAGCTCAAGGTCAAGAG...TGTCTTTACCTCTGACACCCGTGAGTAGGGAGAGGAACACGTTTCCATTCTGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
3UTR-3UTR CCA 90 bp ACAGAGCAGACTCTGTACAAGGAGCTTTCCCAAATGCAAAAGACAACCCTCTGCCAGCCCTCCTGTGCTTaGCACATCATTATCTGTATG +
Preference number: 2 (lower is better)
Translates to: TEQTLYKELSQMQKTTLCQPSCA*HIIICM
Trigger: CATACAGATAATGATGTGCCAAGCACAGGAGGGCTG...GCAGAGGGTTGTCTTTTGCATTTGGGAAAGCTCCTTGTACAGAGTCTGCTCTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
3UTR-3UTR CCA 90 bp ACAACCCTCTGCCCTAAGGAGGACTCCATGCTCTCTGTCACCAAGTCCTTGATGCACTCAAGATTAGTTTaGATGCCAGTGGATACTTCT +
Preference number: 2 (lower is better)
Translates to: TTLCPKEDSMLSVTKSLMHSRLV*MPVDTS
Trigger: AGAAGTATCCACTGGCATCCAAACTAATCTTGAGTG...CATCAAGGACTTGGTGACAGAGAGCATGGAGTCCTCCTTAGGGCAGAGGGTTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
3UTR-3UTR GCA 90 bp TTCCTCTCCCTACTCACGGGTGTCAGAGGTAAAGACATTTGCTTCCCTATAGAAAGGAGCTTTCCCAAATaGAAAAGACAACCCTCTGCC +
Preference number: 2 (lower is better)
Translates to: FLSLLTGVRGKDICFPIERSFPK*KRQPSA
Trigger: GGCAGAGGGTTGTCTTTTGCATTTGGGAAAGCTCCT...TTCTATAGGGAAGCAAATGTCTTTACCTCTGACACCCGTGAGTAGGGAGAGGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
3UTR-3UTR CCA 90 bp TCCAGAATGGAAACGTGTTCCTCTCCCTACTCACGGGTGTCAGAGGTAAAGACACACTCAAGATTAGTTTaGATGCCAGTGGATACTTCT +
Preference number: 2 (lower is better)
Translates to: SRMETCSSPYSRVSEVKTHSRLV*MPVDTS
Trigger: AGAAGTATCCACTGGCATCCAAACTAATCTTGAGTG...TGTCTTTACCTCTGACACCCGTGAGTAGGGAGAGGAACACGTTTCCATTCTGGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
3UTR-3UTR CAA 90 bp GACTCCATGCTCTCTGTCACCAAGTCCTTGATGGAGACAGGGACCAGCTCCTACGCAGCCCTCCTGTGCTaGGCACATCATTATCTGTAT +
Preference number: 3 (lower is better)
Translates to: DSMLSVTKSLMETGTSSYAALLC*AHHYLY
Trigger: ATACAGATAATGATGTGCCAAGCACAGGAGGGCTGC...GTAGGAGCTGGTCCCTGTCTCCATCAAGGACTTGGTGACAGAGAGCATGGAGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
3UTR-3UTR CAA 90 bp AGCTGGCTCAAACAGTTGAGTCCAGATTACAGAGCAGACTCTGTACAAGGAGCTTCTGTCACCAAGTCCTaGATGGAGACAGGGACCAGC +
Preference number: 3 (lower is better)
Translates to: SWLKQLSPDYRADSVQGASVTKS*METGTS
Trigger: GCTGGTCCCTGTCTCCATCAAGGACTTGGTGACAGA...AGCTCCTTGTACAGAGTCTGCTCTGTAATCTGGACTCAACTGTTTGAGCCAGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
3UTR TCA 72 bp AACCTCTACTTCTCCTTAGCTCACCTTTGGCCTCCCTaGGCCTGGGAGATTCCAGAATGGAAACGTGTTCCT +
Preference number: 3 (lower is better)
Translates to: NLYFSLAHLWPP*AWEIPEWKRVP
Trigger: AGGAACACGTTTCCATTCTGGAATCTCCCAGGCTCAGGGAGGCCAAAGGTGAGCTAAGGAGAAGTAGAGGTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
3UTR-3UTR CAA 90 bp TCCAGAATGGAAACGTGTTCCTCTCCCTACTCACGGGTGTCAGAGGTAAAGACAGCAGCCCTCCTGTGCTaGGCACATCATTATCTGTAT +
Preference number: 3 (lower is better)
Translates to: SRMETCSSPYSRVSEVKTAALLC*AHHYLY
Trigger: ATACAGATAATGATGTGCCAAGCACAGGAGGGCTGC...TGTCTTTACCTCTGACACCCGTGAGTAGGGAGAGGAACACGTTTCCATTCTGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
3UTR GCA 72 bp TACAAGGAGCTTTCCCAAATGCAAAAGACAACCCTCTaGCCTAAGGAGGACTCCATGCTCTCTGTCACCAAG +
Preference number: 3 (lower is better)
Translates to: YKELSQMQKTTL*PKEDSMLSVTK
Trigger: CTTGGTGACAGAGAGCATGGAGTCCTCCTTAGGGCAGAGGGTTGTCTTTTGCATTTGGGAAAGCTCCTTGTA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
3UTR-3UTR CAA 90 bp ACAGAGCAGACTCTGTACAAGGAGCTTTCCCAAATGCAAAAGACAACCCTCTGCGCAGCCCTCCTGTGCTaGGCACATCATTATCTGTAT +
Preference number: 3 (lower is better)
Translates to: TEQTLYKELSQMQKTTLCAALLC*AHHYLY
Trigger: ATACAGATAATGATGTGCCAAGCACAGGAGGGCTGC...GCAGAGGGTTGTCTTTTGCATTTGGGAAAGCTCCTTGTACAGAGTCTGCTCTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
3UTR GCA 72 bp TTACAGAGCAGACTCTGTACAAGGAGCTTTCCCAAATaGAAAAGACAACCCTCTGCCCTAAGGAGGACTCCA +
Preference number: 3 (lower is better)
Translates to: LQSRLCTRSFPK*KRQPSALRRTP
Trigger: TGGAGTCCTCCTTAGGGCAGAGGGTTGTCTTTTGCATTTGGGAAAGCTCCTTGTACAGAGTCTGCTCTGTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
3UTR TCA 72 bp ATAAGCAGCTGCTTGCCCTTGGACTTGAACTCACAGTaGCTCTGGGTTCTCTCCTTCCTACATAGACATTTC +
Preference number: 3 (lower is better)
Translates to: ISSCLPLDLNSQ*LWVLSFLHRHF
Trigger: GAAATGTCTATGTAGGAAGGAGAGAACCCAGAGTCACTGTGAGTTCAAGTCCAAGGGCAAGCAGCTGCTTAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
3UTR CCA 72 bp AGATTTCCTAGGAGTAAGGGACATCAGGTGACATGGTaGCAGGGAATGAAAAGTAGAAGCCCTGGTAAAGAG +
Preference number: 3 (lower is better)
Translates to: RFPRSKGHQVTW*QGMKSRSPGKE
Trigger: CTCTTTACCAGGGCTTCTACTTTTCATTCCCTGCCACCATGTCACCTGATGTCCCTTACTCCTAGGAAATCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
3UTR CCA 72 bp CATAGATTTCCTAGGAGTAAGGGACATCAGGTGACATaGTGGCAGGGAATGAAAAGTAGAAGCCCTGGTAAA +
Preference number: 3 (lower is better)
Translates to: HRFPRSKGHQVT*WQGMKSRSPGK
Trigger: TTTACCAGGGCTTCTACTTTTCATTCCCTGCCACCATGTCACCTGATGTCCCTTACTCCTAGGAAATCTATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR GCA 90 bp GACTCCATGCTCTCTGTCACCAAGTCCTTGATGGAGACAGGGACCAGCTCCTACTGCTGTGCTCTTCCCTaGCCCACTGGATCCCACGAA +
Preference number: 4 (lower is better)
Translates to: DSMLSVTKSLMETGTSSYCCALP*PTGSHE
Trigger: TTCGTGGGATCCAGTGGGGCAGGGAAGAGCACAGCA...GTAGGAGCTGGTCCCTGTCTCCATCAAGGACTTGGTGACAGAGAGCATGGAGTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CCA 90 bp GACTCCATGCTCTCTGTCACCAAGTCCTTGATGGAGACAGGGACCAGCTCCTACGGCTGGGCCATTCCATaGAGCAATGCGCACACACTT +
Preference number: 4 (lower is better)
Translates to: DSMLSVTKSLMETGTSSYGWAIP*SNAHTL
Trigger: AAGTGTGTGCGCATTGCTCCATGGAATGGCCCAGCC...GTAGGAGCTGGTCCCTGTCTCCATCAAGGACTTGGTGACAGAGAGCATGGAGTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CCA 90 bp AGAGCAGACTCTGTACAAGGAGCTTTCCCAAATGCAAAAGACAACCCTCTGCCCTCTTCCCTGCCCCACTaGATCCCACGAACGCCGTCG +
Preference number: 4 (lower is better)
Translates to: RADSVQGAFPNAKDNPLPSSLPH*IPRTPS
Trigger: CGACGGCGTTCGTGGGATCCAGTGGGGCAGGGAAGA...GGGCAGAGGGTTGTCTTTTGCATTTGGGAAAGCTCCTTGTACAGAGTCTGCTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR TCA 90 bp GACTCCATGCTCTCTGTCACCAAGTCCTTGATGGAGACAGGGACCAGCTCCTACCTCATTGTCCAGTGCTaGGGTAGCCATGTCCAGAAG +
Preference number: 4 (lower is better)
Translates to: DSMLSVTKSLMETGTSSYLIVQC*GSHVQK
Trigger: CTTCTGGACATGGCTACCTCAGCACTGGACAATGAG...GTAGGAGCTGGTCCCTGTCTCCATCAAGGACTTGGTGACAGAGAGCATGGAGTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR TCA 90 bp ACCCTCTGCCCTAAGGAGGACTCCATGCTCTCTGTCACCAAGTCCTTGATGGAGCTCATTGTCCAGTGCTaGGGTAGCCATGTCCAGAAG +
Preference number: 4 (lower is better)
Translates to: TLCPKEDSMLSVTKSLMELIVQC*GSHVQK
Trigger: CTTCTGGACATGGCTACCTCAGCACTGGACAATGAG...CTCCATCAAGGACTTGGTGACAGAGAGCATGGAGTCCTCCTTAGGGCAGAGGGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR TCA 90 bp ACCCTCTGCCCTAAGGAGGACTCCATGCTCTCTGTCACCAAGTCCTTGATGGAGGAGCCAGTAGCCCCTTaGACTTGGGAAGCATCTGTA +
Preference number: 4 (lower is better)
Translates to: TLCPKEDSMLSVTKSLMEEPVAP*TWEASV
Trigger: TACAGATGCTTCCCAAGTTCAAGGGGCTACTGGCTC...CTCCATCAAGGACTTGGTGACAGAGAGCATGGAGTCCTCCTTAGGGCAGAGGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR GCA 90 bp ACATGGTGGCAGGGAATGAAAAGTAGAAGCCCTGGTAAAGAGTCCCTGCTCCACTGCTGTGCTCTTCCCTaGCCCACTGGATCCCACGAA +
Preference number: 4 (lower is better)
Translates to: TWWQGMKSRSPGKESLLHCCALP*PTGSHE
Trigger: TTCGTGGGATCCAGTGGGGCAGGGAAGAGCACAGCA...GTGGAGCAGGGACTCTTTACCAGGGCTTCTACTTTTCATTCCCTGCCACCATGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR GCA 90 bp ACCCTCTGCCCTAAGGAGGACTCCATGCTCTCTGTCACCAAGTCCTTGATGGAGTTTTACCACACCCACTaGTCCCAACGAATGCCAGCG +
Preference number: 4 (lower is better)
Translates to: TLCPKEDSMLSVTKSLMEFYHTH*SQRMPA
Trigger: CGCTGGCATTCGTTGGGAGCAGTGGGTGTGGTAAAA...CTCCATCAAGGACTTGGTGACAGAGAGCATGGAGTCCTCCTTAGGGCAGAGGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CCA 90 bp AGCTGGCTCAAACAGTTGAGTCCAGATTACAGAGCAGACTCTGTACAAGGAGCTTCTTCCCTGCCCCACTaGATCCCACGAACGCCGTCG +
Preference number: 4 (lower is better)
Translates to: SWLKQLSPDYRADSVQGASSLPH*IPRTPS
Trigger: CGACGGCGTTCGTGGGATCCAGTGGGGCAGGGAAGA...AGCTCCTTGTACAGAGTCTGCTCTGTAATCTGGACTCAACTGTTTGAGCCAGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR TCA 90 bp ACAACCCTCTGCCCTAAGGAGGACTCCATGCTCTCTGTCACCAAGTCCTTGATGCTTGTAACCATCTCCTaGCATGCAGTCCATGACGGG +
Preference number: 4 (lower is better)
Translates to: TTLCPKEDSMLSVTKSLMLVTIS*HAVHDG
Trigger: CCCGTCATGGACTGCATGTCAGGAGATGGTTACAAG...CATCAAGGACTTGGTGACAGAGAGCATGGAGTCCTCCTTAGGGCAGAGGGTTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR TCA 90 bp GACTCCATGCTCTCTGTCACCAAGTCCTTGATGGAGACAGGGACCAGCTCCTACCAGTGGAGGTTCATGTaGCAGATGAGACAGCTGAGA +
Preference number: 4 (lower is better)
Translates to: DSMLSVTKSLMETGTSSYQWRFM*QMRQLR
Trigger: TCTCAGCTGTCTCATCTGTCACATGAACCTCCACTG...GTAGGAGCTGGTCCCTGTCTCCATCAAGGACTTGGTGACAGAGAGCATGGAGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR TCA 90 bp ACCCTCTGCCCTAAGGAGGACTCCATGCTCTCTGTCACCAAGTCCTTGATGGAGTACGCAGCCTTTTTGTaGGGAGCTCTCCAGATTTGG +
Preference number: 4 (lower is better)
Translates to: TLCPKEDSMLSVTKSLMEYAAFL*GALQIW
Trigger: CCAAATCTGGAGAGCTCCTCACAAAAAGGCTGCGTA...CTCCATCAAGGACTTGGTGACAGAGAGCATGGAGTCCTCCTTAGGGCAGAGGGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR TCA 90 bp ACAACCCTCTGCCCTAAGGAGGACTCCATGCTCTCTGTCACCAAGTCCTTGATGGAGCCAGTAGCCCCTTaGACTTGGGAAGCATCTGTA +
Preference number: 4 (lower is better)
Translates to: TTLCPKEDSMLSVTKSLMEPVAP*TWEASV
Trigger: TACAGATGCTTCCCAAGTTCAAGGGGCTACTGGCTC...CATCAAGGACTTGGTGACAGAGAGCATGGAGTCCTCCTTAGGGCAGAGGGTTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR TCA 90 bp GACTCCATGCTCTCTGTCACCAAGTCCTTGATGGAGACAGGGACCAGCTCCTACACAAGCGATGAGCAATaGCAATACAGGTCCGACCCT +
Preference number: 4 (lower is better)
Translates to: DSMLSVTKSLMETGTSSYTSDEQ*QYRSDP
Trigger: AGGGTCGGACCTGTATTGTCATTGCTCATCGCTTGT...GTAGGAGCTGGTCCCTGTCTCCATCAAGGACTTGGTGACAGAGAGCATGGAGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR GCA 90 bp TCCAGAATGGAAACGTGTTCCTCTCCCTACTCACGGGTGTCAGAGGTAAAGACATGCTGTGCTCTTCCCTaGCCCACTGGATCCCACGAA +
Preference number: 4 (lower is better)
Translates to: SRMETCSSPYSRVSEVKTCCALP*PTGSHE
Trigger: TTCGTGGGATCCAGTGGGGCAGGGAAGAGCACAGCA...TGTCTTTACCTCTGACACCCGTGAGTAGGGAGAGGAACACGTTTCCATTCTGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR GCA 90 bp ACATGGTGGCAGGGAATGAAAAGTAGAAGCCCTGGTAAAGAGTCCCTGCTCCACACGAATGCCAGCGTCTaGCCAGGATCCACAGATACC +
Preference number: 4 (lower is better)
Translates to: TWWQGMKSRSPGKESLLHTNASV*PGSTDT
Trigger: GGTATCTGTGGATCCTGGGCAGACGCTGGCATTCGT...GTGGAGCAGGGACTCTTTACCAGGGCTTCTACTTTTCATTCCCTGCCACCATGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CCA 90 bp ACATGGTGGCAGGGAATGAAAAGTAGAAGCCCTGGTAAAGAGTCCCTGCTCCACCATCCAGGACAAGTCTaGAGCCGTACCAGAAGGCCA +
Preference number: 4 (lower is better)
Translates to: TWWQGMKSRSPGKESLLHHPGQV*SRTRRP
Trigger: TGGCCTTCTGGTACGGCTCCAGACTTGTCCTGGATG...GTGGAGCAGGGACTCTTTACCAGGGCTTCTACTTTTCATTCCCTGCCACCATGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR TCA 90 bp ACCCTCTGCCCTAAGGAGGACTCCATGCTCTCTGTCACCAAGTCCTTGATGGAGAATACTGGAAGCTGCTaGACACCCAGTGGAGAAGAT +
Preference number: 4 (lower is better)
Translates to: TLCPKEDSMLSVTKSLMENTGSC*TPSGED
Trigger: ATCTTCTCCACTGGGTGTTCAGCAGCTTCCAGTATT...CTCCATCAAGGACTTGGTGACAGAGAGCATGGAGTCCTCCTTAGGGCAGAGGGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR GCA 90 bp ACCCTCTGCCCTAAGGAGGACTCCATGCTCTCTGTCACCAAGTCCTTGATGGAGAAGGCGGATGTTTTCTaGGATAGTGGTGGAGAACAG +
Preference number: 4 (lower is better)
Translates to: TLCPKEDSMLSVTKSLMEKADVF*DSGGEQ
Trigger: CTGTTCTCCACCACTATCGCAGAAAACATCCGCCTT...CTCCATCAAGGACTTGGTGACAGAGAGCATGGAGTCCTCCTTAGGGCAGAGGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR GCA 90 bp AGAGCAGACTCTGTACAAGGAGCTTTCCCAAATGCAAAAGACAACCCTCTGCCCGCTACCCTTTGCTTCTaGCCACCACTCATCTGGCCT +
Preference number: 4 (lower is better)
Translates to: RADSVQGAFPNAKDNPLPATLCF*PPLIWP
Trigger: AGGCCAGATGAGTGGTGGGCAGAAGCAAAGGGTAGC...GGGCAGAGGGTTGTCTTTTGCATTTGGGAAAGCTCCTTGTACAGAGTCTGCTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR GCA 90 bp TGTAGAGCTATGACAACCCGCAGCCCTCCTGTGCTTGGCACATCATTATCTGTAGCTACCCTTTGCTTCTaGCCACCACTCATCTGGCCT +
Preference number: 4 (lower is better)
Translates to: CRAMTTRSPPVLGTSLSVATLCF*PPLIWP
Trigger: AGGCCAGATGAGTGGTGGGCAGAAGCAAAGGGTAGC...TACAGATAATGATGTGCCAAGCACAGGAGGGCTGCGGGTTGTCATAGCTCTACA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR GCA 90 bp GACTCCATGCTCTCTGTCACCAAGTCCTTGATGGAGACAGGGACCAGCTCCTACACAGTTCTTCATGGGTaGCTCTTTCCACAGCTGTTC +
Preference number: 4 (lower is better)
Translates to: DSMLSVTKSLMETGTSSYTVLHG*LFPQLF
Trigger: GAACAGCTGTGGAAAGAGGCACCCATGAAGAACTGT...GTAGGAGCTGGTCCCTGTCTCCATCAAGGACTTGGTGACAGAGAGCATGGAGTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR GCA 90 bp AGAGCAGACTCTGTACAAGGAGCTTTCCCAAATGCAAAAGACAACCCTCTGCCCACGAATGCCAGCGTCTaGCCAGGATCCACAGATACC +
Preference number: 4 (lower is better)
Translates to: RADSVQGAFPNAKDNPLPTNASV*PGSTDT
Trigger: GGTATCTGTGGATCCTGGGCAGACGCTGGCATTCGT...GGGCAGAGGGTTGTCTTTTGCATTTGGGAAAGCTCCTTGTACAGAGTCTGCTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR GCA 90 bp TGTAGAGCTATGACAACCCGCAGCCCTCCTGTGCTTGGCACATCATTATCTGTAACGAATGCCAGCGTCTaGCCAGGATCCACAGATACC +
Preference number: 4 (lower is better)
Translates to: CRAMTTRSPPVLGTSLSVTNASV*PGSTDT
Trigger: GGTATCTGTGGATCCTGGGCAGACGCTGGCATTCGT...TACAGATAATGATGTGCCAAGCACAGGAGGGCTGCGGGTTGTCATAGCTCTACA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR GCA 90 bp AAGGGACATCAGGTGACATGGTGGCAGGGAATGAAAAGTAGAAGCCCTGGTAAAACTGCTCCCAACGAATaGCAGCGTCTGCCCAGGATC +
Preference number: 4 (lower is better)
Translates to: KGHQVTWWQGMKSRSPGKTAPNE*QRLPRI
Trigger: GATCCTGGGCAGACGCTGGCATTCGTTGGGAGCAGT...TTTACCAGGGCTTCTACTTTTCATTCCCTGCCACCATGTCACCTGATGTCCCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CCA 90 bp AGAGCAGACTCTGTACAAGGAGCTTTCCCAAATGCAAAAGACAACCCTCTGCCCCATCCAGGACAAGTCTaGAGCCGTACCAGAAGGCCA +
Preference number: 4 (lower is better)
Translates to: RADSVQGAFPNAKDNPLPHPGQV*SRTRRP
Trigger: TGGCCTTCTGGTACGGCTCCAGACTTGTCCTGGATG...GGGCAGAGGGTTGTCTTTTGCATTTGGGAAAGCTCCTTGTACAGAGTCTGCTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CCA 90 bp TCCAGAATGGAAACGTGTTCCTCTCCCTACTCACGGGTGTCAGAGGTAAAGACAGGTGGAGAACAGAACTaGCTCCTGTTCCACGATCCC +
Preference number: 4 (lower is better)
Translates to: SRMETCSSPYSRVSEVKTGGEQN*LLFHDP
Trigger: GGGATCGTGGAACAGGAGCCAGTTCTGTTCTCCACC...TGTCTTTACCTCTGACACCCGTGAGTAGGGAGAGGAACACGTTTCCATTCTGGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CCA 90 bp ACCCTCTGCCCTAAGGAGGACTCCATGCTCTCTGTCACCAAGTCCTTGATGGAGGCATCCTTGGCAGCTTaGACTATGTCTTCCATTGTC +
Preference number: 4 (lower is better)
Translates to: TLCPKEDSMLSVTKSLMEASLAA*TMSSIV
Trigger: GACAATGGAAGACATAGTCCAAGCTGCCAAGGATGC...CTCCATCAAGGACTTGGTGACAGAGAGCATGGAGTCCTCCTTAGGGCAGAGGGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CCA 90 bp GACTCCATGCTCTCTGTCACCAAGTCCTTGATGGAGACAGGGACCAGCTCCTACAACCGTTCCAACAGCTaGATGCTGGTGCTTTTACCA +
Preference number: 4 (lower is better)
Translates to: DSMLSVTKSLMETGTSSYNRSNS*MLVLLP
Trigger: TGGTAAAAGCACCAGCATCCAGCTGTTGGAACGGTT...GTAGGAGCTGGTCCCTGTCTCCATCAAGGACTTGGTGACAGAGAGCATGGAGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR TCA 90 bp ACAACCCTCTGCCCTAAGGAGGACTCCATGCTCTCTGTCACCAAGTCCTTGATGCAGAGAATCTTGAATTaGGCTCTCCCACAGAAGTGC +
Preference number: 4 (lower is better)
Translates to: TTLCPKEDSMLSVTKSLMQRILN*ALPQKC
Trigger: GCACTTCTGTGGGAGAGCTCAATTCAAGATTCTCTG...CATCAAGGACTTGGTGACAGAGAGCATGGAGTCCTCCTTAGGGCAGAGGGTTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR TCA 90 bp ACATGGTGGCAGGGAATGAAAAGTAGAAGCCCTGGTAAAGAGTCCCTGCTCCACTACGCAGCCTTTTTGTaGGGAGCTCTCCAGATTTGG +
Preference number: 4 (lower is better)
Translates to: TWWQGMKSRSPGKESLLHYAAFL*GALQIW
Trigger: CCAAATCTGGAGAGCTCCTCACAAAAAGGCTGCGTA...GTGGAGCAGGGACTCTTTACCAGGGCTTCTACTTTTCATTCCCTGCCACCATGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR TCA 90 bp ACAACCCTCTGCCCTAAGGAGGACTCCATGCTCTCTGTCACCAAGTCCTTGATGAATGGCAGTCTTGTATaGCTTCTCCAGCTCAACCTC +
Preference number: 4 (lower is better)
Translates to: TTLCPKEDSMLSVTKSLMNGSLV*LLQLNL
Trigger: GAGGTTGAGCTGGAGAAGTCATACAAGACTGCCATT...CATCAAGGACTTGGTGACAGAGAGCATGGAGTCCTCCTTAGGGCAGAGGGTTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR TCA 90 bp TCCAGAATGGAAACGTGTTCCTCTCCCTACTCACGGGTGTCAGAGGTAAAGACATCTCTGGGAGTGACATaGCGAAGTCATGCAGCTGAG +
Preference number: 4 (lower is better)
Translates to: SRMETCSSPYSRVSEVKTSLGVT*RSHAAE
Trigger: CTCAGCTGCATGACTTCGTCATGTCACTCCCAGAGA...TGTCTTTACCTCTGACACCCGTGAGTAGGGAGAGGAACACGTTTCCATTCTGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR TCA 90 bp ACATGGTGGCAGGGAATGAAAAGTAGAAGCCCTGGTAAAGAGTCCCTGCTCCACACAAGCGATGAGCAATaGCAATACAGGTCCGACCCT +
Preference number: 4 (lower is better)
Translates to: TWWQGMKSRSPGKESLLHTSDEQ*QYRSDP
Trigger: AGGGTCGGACCTGTATTGTCATTGCTCATCGCTTGT...GTGGAGCAGGGACTCTTTACCAGGGCTTCTACTTTTCATTCCCTGCCACCATGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR GCA 90 bp ACCCTCTGCCCTAAGGAGGACTCCATGCTCTCTGTCACCAAGTCCTTGATGGAGAGCCACACCAACTCCTaGGTAGATGCCAGAAAATTT +
Preference number: 4 (lower is better)
Translates to: TLCPKEDSMLSVTKSLMESHTNS*VDARKF
Trigger: AAATTTTCTGGCATCTACGCAGGAGTTGGTGTGGCT...CTCCATCAAGGACTTGGTGACAGAGAGCATGGAGTCCTCCTTAGGGCAGAGGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR GCA 90 bp GACTCCATGCTCTCTGTCACCAAGTCCTTGATGGAGACAGGGACCAGCTCCTACAGCCACACCAACTCCTaGGTAGATGCCAGAAAATTT +
Preference number: 4 (lower is better)
Translates to: DSMLSVTKSLMETGTSSYSHTNS*VDARKF
Trigger: AAATTTTCTGGCATCTACGCAGGAGTTGGTGTGGCT...GTAGGAGCTGGTCCCTGTCTCCATCAAGGACTTGGTGACAGAGAGCATGGAGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR GCA 90 bp AAGGGACATCAGGTGACATGGTGGCAGGGAATGAAAAGTAGAAGCCCTGGTAAACAGACCTATGACGGCTaGCCCAATCCCAATGAGAGG +
Preference number: 4 (lower is better)
Translates to: KGHQVTWWQGMKSRSPGKQTYDG*PNPNER
Trigger: CCTCTCATTGGGATTGGGGCAGCCGTCATAGGTCTG...TTTACCAGGGCTTCTACTTTTCATTCCCTGCCACCATGTCACCTGATGTCCCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR GCA 90 bp ACAGAGCAGACTCTGTACAAGGAGCTTTCCCAAATGCAAAAGACAACCCTCTGCCAGACCTATGACGGCTaGCCCAATCCCAATGAGAGG +
Preference number: 4 (lower is better)
Translates to: TEQTLYKELSQMQKTTLCQTYDG*PNPNER
Trigger: CCTCTCATTGGGATTGGGGCAGCCGTCATAGGTCTG...GCAGAGGGTTGTCTTTTGCATTTGGGAAAGCTCCTTGTACAGAGTCTGCTCTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR GCA 90 bp ACATGGTGGCAGGGAATGAAAAGTAGAAGCCCTGGTAAAGAGTCCCTGCTCCACGTTCCAACAGCTGGATaGTGGTGCTTTTACCACACC +
Preference number: 4 (lower is better)
Translates to: TWWQGMKSRSPGKESLLHVPTAG*WCFYHT
Trigger: GGTGTGGTAAAAGCACCAGCATCCAGCTGTTGGAAC...GTGGAGCAGGGACTCTTTACCAGGGCTTCTACTTTTCATTCCCTGCCACCATGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CCA 90 bp ACAGAGCAGACTCTGTACAAGGAGCTTTCCCAAATGCAAAAGACAACCCTCTGCGGCTGGGCCATTCCATaGAGCAATGCGCACACACTT +
Preference number: 4 (lower is better)
Translates to: TEQTLYKELSQMQKTTLCGWAIP*SNAHTL
Trigger: AAGTGTGTGCGCATTGCTCCATGGAATGGCCCAGCC...GCAGAGGGTTGTCTTTTGCATTTGGGAAAGCTCCTTGTACAGAGTCTGCTCTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CCA 90 bp AAGGGACATCAGGTGACATGGTGGCAGGGAATGAAAAGTAGAAGCCCTGGTAAAGGCTGGGCCATTCCATaGAGCAATGCGCACACACTT +
Preference number: 4 (lower is better)
Translates to: KGHQVTWWQGMKSRSPGKGWAIP*SNAHTL
Trigger: AAGTGTGTGCGCATTGCTCCATGGAATGGCCCAGCC...TTTACCAGGGCTTCTACTTTTCATTCCCTGCCACCATGTCACCTGATGTCCCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CCA 90 bp AGCTGGCTCAAACAGTTGAGTCCAGATTACAGAGCAGACTCTGTACAAGGAGCTCATCCAGGACAAGTCTaGAGCCGTACCAGAAGGCCA +
Preference number: 4 (lower is better)
Translates to: SWLKQLSPDYRADSVQGAHPGQV*SRTRRP
Trigger: TGGCCTTCTGGTACGGCTCCAGACTTGTCCTGGATG...AGCTCCTTGTACAGAGTCTGCTCTGTAATCTGGACTCAACTGTTTGAGCCAGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CCA 90 bp ACCCTCTGCCCTAAGGAGGACTCCATGCTCTCTGTCACCAAGTCCTTGATGGAGTGGAAGGTCACATTGTaGAACTCAATTTCGCCCTTG +
Preference number: 4 (lower is better)
Translates to: TLCPKEDSMLSVTKSLMEWKVTL*NSISPL
Trigger: CAAGGGCGAAATTGAGTTCCACAATGTGACCTTCCA...CTCCATCAAGGACTTGGTGACAGAGAGCATGGAGTCCTCCTTAGGGCAGAGGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CCA 90 bp AGACTCTGTACAAGGAGCTTTCCCAAATGCAAAAGACAACCCTCTGCCCTAAGGGGTGGAGAACAGAACTaGCTCCTGTTCCACGATCCC +
Preference number: 4 (lower is better)
Translates to: RLCTRSFPKCKRQPSALRGGEQN*LLFHDP
Trigger: GGGATCGTGGAACAGGAGCCAGTTCTGTTCTCCACC...CCTTAGGGCAGAGGGTTGTCTTTTGCATTTGGGAAAGCTCCTTGTACAGAGTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CCA 90 bp AAGGGACATCAGGTGACATGGTGGCAGGGAATGAAAAGTAGAAGCCCTGGTAAAGGTGGAGAACAGAACTaGCTCCTGTTCCACGATCCC +
Preference number: 4 (lower is better)
Translates to: KGHQVTWWQGMKSRSPGKGGEQN*LLFHDP
Trigger: GGGATCGTGGAACAGGAGCCAGTTCTGTTCTCCACC...TTTACCAGGGCTTCTACTTTTCATTCCCTGCCACCATGTCACCTGATGTCCCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CCA 90 bp ACCCTCTGCCCTAAGGAGGACTCCATGCTCTCTGTCACCAAGTCCTTGATGGAGTCTAACAGTTCTTCATaGGTGCCTCTTTCCACAGCT +
Preference number: 4 (lower is better)
Translates to: TLCPKEDSMLSVTKSLMESNSSS*VPLSTA
Trigger: AGCTGTGGAAAGAGGCACCCATGAAGAACTGTTAGA...CTCCATCAAGGACTTGGTGACAGAGAGCATGGAGTCCTCCTTAGGGCAGAGGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CCA 90 bp AGAGCAGACTCTGTACAAGGAGCTTTCCCAAATGCAAAAGACAACCCTCTGCCCCCAACAGCTGGATGCTaGTGCTTTTACCACACCCAC +
Preference number: 4 (lower is better)
Translates to: RADSVQGAFPNAKDNPLPPTAGC*CFYHTH
Trigger: GTGGGTGTGGTAAAAGCACCAGCATCCAGCTGTTGG...GGGCAGAGGGTTGTCTTTTGCATTTGGGAAAGCTCCTTGTACAGAGTCTGCTCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR TCA 90 bp ACATGGTGGCAGGGAATGAAAAGTAGAAGCCCTGGTAAAGAGTCCCTGCTCCACCAGAGAATCTTGAATTaGGCTCTCCCACAGAAGTGC +
Preference number: 4 (lower is better)
Translates to: TWWQGMKSRSPGKESLLHQRILN*ALPQKC
Trigger: GCACTTCTGTGGGAGAGCTCAATTCAAGATTCTCTG...GTGGAGCAGGGACTCTTTACCAGGGCTTCTACTTTTCATTCCCTGCCACCATGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR TCA 90 bp CAGAATGGAAACGTGTTCCTCTCCCTACTCACGGGTGTCAGAGGTAAAGACATTTCAACTCAAGCTCCGTaGACTTGGCCACACTCAGAC +
Preference number: 4 (lower is better)
Translates to: QNGNVFLSLLTGVRGKDISTQAP*TWPHSD
Trigger: GTCTGAGTGTGGCCAAGTTCACGGAGCTTGAGTTGA...AATGTCTTTACCTCTGACACCCGTGAGTAGGGAGAGGAACACGTTTCCATTCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR TCA 90 bp ACAGAGCAGACTCTGTACAAGGAGCTTTCCCAAATGCAAAAGACAACCCTCTGCTCAACTCAAGCTCCGTaGACTTGGCCACACTCAGAC +
Preference number: 4 (lower is better)
Translates to: TEQTLYKELSQMQKTTLCSTQAP*TWPHSD
Trigger: GTCTGAGTGTGGCCAAGTTCACGGAGCTTGAGTTGA...GCAGAGGGTTGTCTTTTGCATTTGGGAAAGCTCCTTGTACAGAGTCTGCTCTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR TCA 90 bp GACTCCATGCTCTCTGTCACCAAGTCCTTGATGGAGACAGGGACCAGCTCCTACCATAACAGAAGAAAATaGGACACCACATGTACCCAG +
Preference number: 4 (lower is better)
Translates to: DSMLSVTKSLMETGTSSYHNRRK*DTTCTQ
Trigger: CTGGGTACATGTGGTGTCTCATTTTCTTCTGTTATG...GTAGGAGCTGGTCCCTGTCTCCATCAAGGACTTGGTGACAGAGAGCATGGAGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR TCA 90 bp ACATGGTGGCAGGGAATGAAAAGTAGAAGCCCTGGTAAAGAGTCCCTGCTCCACAATACTGGAAGCTGCTaGACACCCAGTGGAGAAGAT +
Preference number: 4 (lower is better)
Translates to: TWWQGMKSRSPGKESLLHNTGSC*TPSGED
Trigger: ATCTTCTCCACTGGGTGTTCAGCAGCTTCCAGTATT...GTGGAGCAGGGACTCTTTACCAGGGCTTCTACTTTTCATTCCCTGCCACCATGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR TCA 90 bp CAGAATGGAAACGTGTTCCTCTCCCTACTCACGGGTGTCAGAGGTAAAGACATTCTTGTAACCATCTCCTaGCATGCAGTCCATGACGGG +
Preference number: 4 (lower is better)
Translates to: QNGNVFLSLLTGVRGKDILVTIS*HAVHDG
Trigger: CCCGTCATGGACTGCATGTCAGGAGATGGTTACAAG...AATGTCTTTACCTCTGACACCCGTGAGTAGGGAGAGGAACACGTTTCCATTCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR TCA 90 bp AGACTCTGTACAAGGAGCTTTCCCAAATGCAAAAGACAACCCTCTGCCCTAAGGCTTGTAACCATCTCCTaGCATGCAGTCCATGACGGG +
Preference number: 4 (lower is better)
Translates to: RLCTRSFPKCKRQPSALRLVTIS*HAVHDG
Trigger: CCCGTCATGGACTGCATGTCAGGAGATGGTTACAAG...CCTTAGGGCAGAGGGTTGTCTTTTGCATTTGGGAAAGCTCCTTGTACAGAGTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR TCA 90 bp CAGAATGGAAACGTGTTCCTCTCCCTACTCACGGGTGTCAGAGGTAAAGACATTCTCATTGTCCAGTGCTaGGGTAGCCATGTCCAGAAG +
Preference number: 4 (lower is better)
Translates to: QNGNVFLSLLTGVRGKDILIVQC*GSHVQK
Trigger: CTTCTGGACATGGCTACCTCAGCACTGGACAATGAG...AATGTCTTTACCTCTGACACCCGTGAGTAGGGAGAGGAACACGTTTCCATTCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR TCA 90 bp TGTAGAGCTATGACAACCCGCAGCCCTCCTGTGCTTGGCACATCATTATCTGTACAGTGGAGGTTCATGTaGCAGATGAGACAGCTGAGA +
Preference number: 4 (lower is better)
Translates to: CRAMTTRSPPVLGTSLSVQWRFM*QMRQLR
Trigger: TCTCAGCTGTCTCATCTGTCACATGAACCTCCACTG...TACAGATAATGATGTGCCAAGCACAGGAGGGCTGCGGGTTGTCATAGCTCTACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR TCA 90 bp AGAGCAGACTCTGTACAAGGAGCTTTCCCAAATGCAAAAGACAACCCTCTGCCCCAGTGGAGGTTCATGTaGCAGATGAGACAGCTGAGA +
Preference number: 4 (lower is better)
Translates to: RADSVQGAFPNAKDNPLPQWRFM*QMRQLR
Trigger: TCTCAGCTGTCTCATCTGTCACATGAACCTCCACTG...GGGCAGAGGGTTGTCTTTTGCATTTGGGAAAGCTCCTTGTACAGAGTCTGCTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR TCA 90 bp GACTCCATGCTCTCTGTCACCAAGTCCTTGATGGAGACAGGGACCAGCTCCTACGTCTTAACATTGCCTTaGAACCAAATTTACGCAGCC +
Preference number: 4 (lower is better)
Translates to: DSMLSVTKSLMETGTSSYVLTLP*NQIYAA
Trigger: GGCTGCGTAAATTTGGTTTCAAGGCAATGTTAAGAC...GTAGGAGCTGGTCCCTGTCTCCATCAAGGACTTGGTGACAGAGAGCATGGAGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR TCA 90 bp ACAGAGCAGACTCTGTACAAGGAGCTTTCCCAAATGCAAAAGACAACCCTCTGCTCTCTGGGAGTGACATaGCGAAGTCATGCAGCTGAG +
Preference number: 4 (lower is better)
Translates to: TEQTLYKELSQMQKTTLCSLGVT*RSHAAE
Trigger: CTCAGCTGCATGACTTCGTCATGTCACTCCCAGAGA...GCAGAGGGTTGTCTTTTGCATTTGGGAAAGCTCCTTGTACAGAGTCTGCTCTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR TCA 90 bp CAGAATGGAAACGTGTTCCTCTCCCTACTCACGGGTGTCAGAGGTAAAGACATTTCTCTGGGAGTGACATaGCGAAGTCATGCAGCTGAG +
Preference number: 4 (lower is better)
Translates to: QNGNVFLSLLTGVRGKDISLGVT*RSHAAE
Trigger: CTCAGCTGCATGACTTCGTCATGTCACTCCCAGAGA...AATGTCTTTACCTCTGACACCCGTGAGTAGGGAGAGGAACACGTTTCCATTCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR GCA 90 bp TTCCTCTCCCTACTCACGGGTGTCAGAGGTAAAGACATTTGCTTCCCTATAGAACAGACCTATGACGGCTaGCCCAATCCCAATGAGAGG +
Preference number: 4 (lower is better)
Translates to: FLSLLTGVRGKDICFPIEQTYDG*PNPNER
Trigger: CCTCTCATTGGGATTGGGGCAGCCGTCATAGGTCTG...TTCTATAGGGAAGCAAATGTCTTTACCTCTGACACCCGTGAGTAGGGAGAGGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR GCA 90 bp ACAACCCTCTGCCCTAAGGAGGACTCCATGCTCTCTGTCACCAAGTCCTTGATGTCCACAGCTGTTCCATaGTCAAAGCCAATGATCACA +
Preference number: 4 (lower is better)
Translates to: TTLCPKEDSMLSVTKSLMSTAVP*SKPMIT
Trigger: TGTGATCATTGGCTTTGAGCATGGAACAGCTGTGGA...CATCAAGGACTTGGTGACAGAGAGCATGGAGTCCTCCTTAGGGCAGAGGGTTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR GCA 90 bp ACCCTCTGCCCTAAGGAGGACTCCATGCTCTCTGTCACCAAGTCCTTGATGGAGTTATCTTCTTGGCTTTaGAGGGTCACAAGCATGAAG +
Preference number: 4 (lower is better)
Translates to: TLCPKEDSMLSVTKSLMELSSWL*RVTSMK
Trigger: CTTCATGCTTGTGACCCTGCAAAGCCAAGAAGATAA...CTCCATCAAGGACTTGGTGACAGAGAGCATGGAGTCCTCCTTAGGGCAGAGGGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR GCA 90 bp ACCCTCTGCCCTAAGGAGGACTCCATGCTCTCTGTCACCAAGTCCTTGATGGAGGAGGCCATAGACATTTaGCTTTCTAATGGCAGTCTT +
Preference number: 4 (lower is better)
Translates to: TLCPKEDSMLSVTKSLMEEAIDI*LSNGSL
Trigger: AAGACTGCCATTAGAAAGGCAAATGTCTATGGCCTC...CTCCATCAAGGACTTGGTGACAGAGAGCATGGAGTCCTCCTTAGGGCAGAGGGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR GCA 90 bp CAGAATGGAAACGTGTTCCTCTCCCTACTCACGGGTGTCAGAGGTAAAGACATTTTTTACCACACCCACTaGTCCCAACGAATGCCAGCG +
Preference number: 4 (lower is better)
Translates to: QNGNVFLSLLTGVRGKDIFYHTH*SQRMPA
Trigger: CGCTGGCATTCGTTGGGAGCAGTGGGTGTGGTAAAA...AATGTCTTTACCTCTGACACCCGTGAGTAGGGAGAGGAACACGTTTCCATTCTG
50% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CCA 90 bp ACAACCCTCTGCCCTAAGGAGGACTCCATGCTCTCTGTCACCAAGTCCTTGATGCTGCTGAACACCCAGTaGAGAAGATTTCCAAACAAG +
Preference number: 4 (lower is better)
Translates to: TTLCPKEDSMLSVTKSLMLLNTQ*RRFPNK
Trigger: CTTGTTTGGAAATCTTCTCCACTGGGTGTTCAGCAG...CATCAAGGACTTGGTGACAGAGAGCATGGAGTCCTCCTTAGGGCAGAGGGTTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CCA 90 bp ACCCTCTGCCCTAAGGAGGACTCCATGCTCTCTGTCACCAAGTCCTTGATGGAGTTGTTTGGAAAATACTaGAAGCTGCTGAACACCCAG +
Preference number: 4 (lower is better)
Translates to: TLCPKEDSMLSVTKSLMELFGKY*KLLNTQ
Trigger: CTGGGTGTTCAGCAGCTTCCAGTATTTTCCAAACAA...CTCCATCAAGGACTTGGTGACAGAGAGCATGGAGTCCTCCTTAGGGCAGAGGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CCA 90 bp ACAACCCTCTGCCCTAAGGAGGACTCCATGCTCTCTGTCACCAAGTCCTTGATGGGAGCTCTCCAGATTTaGCAAAATTGTAACCCTGCA +
Preference number: 4 (lower is better)
Translates to: TTLCPKEDSMLSVTKSLMGALQI*QNCNPA
Trigger: TGCAGGGTTACAATTTTGCCAAATCTGGAGAGCTCC...CATCAAGGACTTGGTGACAGAGAGCATGGAGTCCTCCTTAGGGCAGAGGGTTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CCA 90 bp TCCAGAATGGAAACGTGTTCCTCTCCCTACTCACGGGTGTCAGAGGTAAAGACAGCTTCGTTGGTGATCTaGCCAGCCTTCTCCAGAATT +
Preference number: 4 (lower is better)
Translates to: SRMETCSSPYSRVSEVKTASLVI*PAFSRI
Trigger: AATTCTGGAGAAGGCTGGCCAGATCACCAACGAAGC...TGTCTTTACCTCTGACACCCGTGAGTAGGGAGAGGAACACGTTTCCATTCTGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CCA 90 bp GACTCCATGCTCTCTGTCACCAAGTCCTTGATGGAGACAGGGACCAGCTCCTACTCCATCAGTTTCTTATaGGTCCCCTTTTCAATCACC +
Preference number: 4 (lower is better)
Translates to: DSMLSVTKSLMETGTSSYSISFL*VPFSIT
Trigger: GGTGATTGAAAAGGGGACCCATAAGAAACTGATGGA...GTAGGAGCTGGTCCCTGTCTCCATCAAGGACTTGGTGACAGAGAGCATGGAGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR TCA 90 bp AGCTGGCTCAAACAGTTGAGTCCAGATTACAGAGCAGACTCTGTACAAGGAGCTACAAGCGATGAGCAATaGCAATACAGGTCCGACCCT +
Preference number: 4 (lower is better)
Translates to: SWLKQLSPDYRADSVQGATSDEQ*QYRSDP
Trigger: AGGGTCGGACCTGTATTGTCATTGCTCATCGCTTGT...AGCTCCTTGTACAGAGTCTGCTCTGTAATCTGGACTCAACTGTTTGAGCCAGCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR TCA 90 bp ACATGGTGGCAGGGAATGAAAAGTAGAAGCCCTGGTAAAGAGTCCCTGCTCCACGACGGCGATGATATCTaGGTTCTGGATAGTAGACAA +
Preference number: 4 (lower is better)
Translates to: TWWQGMKSRSPGKESLLHDGDDI*VLDSRQ
Trigger: TTGTCTACTATCCAGAACTCAGATATCATCGCCGTC...GTGGAGCAGGGACTCTTTACCAGGGCTTCTACTTTTCATTCCCTGCCACCATGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR TCA 90 bp ACCCTCTGCCCTAAGGAGGACTCCATGCTCTCTGTCACCAAGTCCTTGATGGAGATTCTGGAAACCATCTaGTTCGAAAGCATGATTCTC +
Preference number: 4 (lower is better)
Translates to: TLCPKEDSMLSVTKSLMEILETI*FESMIL
Trigger: GAGAATCATGCTTTCGAATCAGATGGTTTCCAGAAT...CTCCATCAAGGACTTGGTGACAGAGAGCATGGAGTCCTCCTTAGGGCAGAGGGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180142.2
CDS-3UTR GCA 90 bp GACTCCATGCTCTCTGTCACCAAGTCCTTGATGGAGACAGGGACCAGCTCCTACCATAATGAAGTTGTATaGATTAGCATCCTTGGCAGC +
Preference number: 4 (lower is better)
Translates to: DSMLSVTKSLMETGTSSYHNEVV*ISILGS
Trigger: GCTGCCAAGGATGCTAATGCATACAACTTCATTATG...GTAGGAGCTGGTCCCTGTCTCCATCAAGGACTTGGTGACAGAGAGCATGGAGTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR GCA 90 bp TCCAGAATGGAAACGTGTTCCTCTCCCTACTCACGGGTGTCAGAGGTAAAGACAACAGTTCTTCATGGGTaGCTCTTTCCACAGCTGTTC +
Preference number: 4 (lower is better)
Translates to: SRMETCSSPYSRVSEVKTTVLHG*LFPQLF
Trigger: GAACAGCTGTGGAAAGAGGCACCCATGAAGAACTGT...TGTCTTTACCTCTGACACCCGTGAGTAGGGAGAGGAACACGTTTCCATTCTGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR GCA 90 bp TTCCTCTCCCTACTCACGGGTGTCAGAGGTAAAGACATTTGCTTCCCTATAGAAAGCCGTTGCGCTCATTaGAATGGAAGAGACCACCCT +
Preference number: 4 (lower is better)
Translates to: FLSLLTGVRGKDICFPIESRCAH*NGRDHP
Trigger: AGGGTGGTCTCTTCCATTGCAATGAGCGCAACGGCT...TTCTATAGGGAAGCAAATGTCTTTACCTCTGACACCCGTGAGTAGGGAGAGGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR GCA 90 bp CAGAATGGAAACGTGTTCCTCTCCCTACTCACGGGTGTCAGAGGTAAAGACATTGTTCCAACAGCTGGATaGTGGTGCTTTTACCACACC +
Preference number: 4 (lower is better)
Translates to: QNGNVFLSLLTGVRGKDIVPTAG*WCFYHT
Trigger: GGTGTGGTAAAAGCACCAGCATCCAGCTGTTGGAAC...AATGTCTTTACCTCTGACACCCGTGAGTAGGGAGAGGAACACGTTTCCATTCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR GCA 90 bp AAGGGACATCAGGTGACATGGTGGCAGGGAATGAAAAGTAGAAGCCCTGGTAAAGTTCCAACAGCTGGATaGTGGTGCTTTTACCACACC +
Preference number: 4 (lower is better)
Translates to: KGHQVTWWQGMKSRSPGKVPTAG*WCFYHT
Trigger: GGTGTGGTAAAAGCACCAGCATCCAGCTGTTGGAAC...TTTACCAGGGCTTCTACTTTTCATTCCCTGCCACCATGTCACCTGATGTCCCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CCA 90 bp AGACTCTGTACAAGGAGCTTTCCCAAATGCAAAAGACAACCCTCTGCCCTAAGGCACAATAATCATGCCTaGCTGGGCCATTCCATGGAG +
Preference number: 4 (lower is better)
Translates to: RLCTRSFPKCKRQPSALRHNNHA*LGHSME
Trigger: CTCCATGGAATGGCCCAGCCAGGCATGATTATTGTG...CCTTAGGGCAGAGGGTTGTCTTTTGCATTTGGGAAAGCTCCTTGTACAGAGTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CCA 90 bp ACAACCCTCTGCCCTAAGGAGGACTCCATGCTCTCTGTCACCAAGTCCTTGATGTTGTTTGGAAAATACTaGAAGCTGCTGAACACCCAG +
Preference number: 4 (lower is better)
Translates to: TTLCPKEDSMLSVTKSLMLFGKY*KLLNTQ
Trigger: CTGGGTGTTCAGCAGCTTCCAGTATTTTCCAAACAA...CATCAAGGACTTGGTGACAGAGAGCATGGAGTCCTCCTTAGGGCAGAGGGTTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CCA 90 bp ACATGGTGGCAGGGAATGAAAAGTAGAAGCCCTGGTAAAGAGTCCCTGCTCCACTGGAAGGTCACATTGTaGAACTCAATTTCGCCCTTG +
Preference number: 4 (lower is better)
Translates to: TWWQGMKSRSPGKESLLHWKVTL*NSISPL
Trigger: CAAGGGCGAAATTGAGTTCCACAATGTGACCTTCCA...GTGGAGCAGGGACTCTTTACCAGGGCTTCTACTTTTCATTCCCTGCCACCATGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CCA 90 bp TCCAGAATGGAAACGTGTTCCTCTCCCTACTCACGGGTGTCAGAGGTAAAGACAGCATCCTTGGCAGCTTaGACTATGTCTTCCATTGTC +
Preference number: 4 (lower is better)
Translates to: SRMETCSSPYSRVSEVKTASLAA*TMSSIV
Trigger: GACAATGGAAGACATAGTCCAAGCTGCCAAGGATGC...TGTCTTTACCTCTGACACCCGTGAGTAGGGAGAGGAACACGTTTCCATTCTGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CCA 90 bp AGACTCTGTACAAGGAGCTTTCCCAAATGCAAAAGACAACCCTCTGCCCTAAGGGCTTCGTTGGTGATCTaGCCAGCCTTCTCCAGAATT +
Preference number: 4 (lower is better)
Translates to: RLCTRSFPKCKRQPSALRASLVI*PAFSRI
Trigger: AATTCTGGAGAAGGCTGGCCAGATCACCAACGAAGC...CCTTAGGGCAGAGGGTTGTCTTTTGCATTTGGGAAAGCTCCTTGTACAGAGTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CCA 90 bp ACAGAGCAGACTCTGTACAAGGAGCTTTCCCAAATGCAAAAGACAACCCTCTGCGCTTCGTTGGTGATCTaGCCAGCCTTCTCCAGAATT +
Preference number: 4 (lower is better)
Translates to: TEQTLYKELSQMQKTTLCASLVI*PAFSRI
Trigger: AATTCTGGAGAAGGCTGGCCAGATCACCAACGAAGC...GCAGAGGGTTGTCTTTTGCATTTGGGAAAGCTCCTTGTACAGAGTCTGCTCTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CCA 90 bp TTCCTCTCCCTACTCACGGGTGTCAGAGGTAAAGACATTTGCTTCCCTATAGAACCAACAGCTGGATGCTaGTGCTTTTACCACACCCAC +
Preference number: 4 (lower is better)
Translates to: FLSLLTGVRGKDICFPIEPTAGC*CFYHTH
Trigger: GTGGGTGTGGTAAAAGCACCAGCATCCAGCTGTTGG...TTCTATAGGGAAGCAAATGTCTTTACCTCTGACACCCGTGAGTAGGGAGAGGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR TCA 90 bp ACAACCCTCTGCCCTAAGGAGGACTCCATGCTCTCTGTCACCAAGTCCTTGATGGTTATGGAAACCATCTaGTTCGAAAGCATGATTCTC +
Preference number: 4 (lower is better)
Translates to: TTLCPKEDSMLSVTKSLMVMETI*FESMIL
Trigger: GAGAATCATGCTTTCGAATCAGATGGTTTCCATAAC...CATCAAGGACTTGGTGACAGAGAGCATGGAGTCCTCCTTAGGGCAGAGGGTTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
CDS-3UTR TCA 90 bp AAGGGACATCAGGTGACATGGTGGCAGGGAATGAAAAGTAGAAGCCCTGGTAAACAGAGAATCTTGAATTaGGCTCTCCCACAGAAGTGC +
Preference number: 4 (lower is better)
Translates to: KGHQVTWWQGMKSRSPGKQRILN*ALPQKC
Trigger: GCACTTCTGTGGGAGAGCTCAATTCAAGATTCTCTG...TTTACCAGGGCTTCTACTTTTCATTCCCTGCCACCATGTCACCTGATGTCCCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR TCA 90 bp AGACTCTGTACAAGGAGCTTTCCCAAATGCAAAAGACAACCCTCTGCCCTAAGGAATACTGGAAGCTGCTaGACACCCAGTGGAGAAGAT +
Preference number: 4 (lower is better)
Translates to: RLCTRSFPKCKRQPSALRNTGSC*TPSGED
Trigger: ATCTTCTCCACTGGGTGTTCAGCAGCTTCCAGTATT...CCTTAGGGCAGAGGGTTGTCTTTTGCATTTGGGAAAGCTCCTTGTACAGAGTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR TCA 90 bp TGTAGAGCTATGACAACCCGCAGCCCTCCTGTGCTTGGCACATCATTATCTGTACATAGAATCTCTGAATaGGCTGTAGTGCTGTGCTCT +
Preference number: 4 (lower is better)
Translates to: CRAMTTRSPPVLGTSLSVHRISE*AVVLCS
Trigger: AGAGCACAGCACTACAGCTCATTCAGAGATTCTATG...TACAGATAATGATGTGCCAAGCACAGGAGGGCTGCGGGTTGTCATAGCTCTACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR TCA 90 bp TCCAGAATGGAAACGTGTTCCTCTCCCTACTCACGGGTGTCAGAGGTAAAGACACCTGCAGAAATTGTGTaGAAAGTGATACACAGCCCA +
Preference number: 4 (lower is better)
Translates to: SRMETCSSPYSRVSEVKTPAEIV*KVIHSP
Trigger: TGGGCTGTGTATCACTTTTCACACAATTTCTGCAGG...TGTCTTTACCTCTGACACCCGTGAGTAGGGAGAGGAACACGTTTCCATTCTGGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR TCA 90 bp AGCTGGCTCAAACAGTTGAGTCCAGATTACAGAGCAGACTCTGTACAAGGAGCTAATGGCAGTCTTGTATaGCTTCTCCAGCTCAACCTC +
Preference number: 4 (lower is better)
Translates to: SWLKQLSPDYRADSVQGANGSLV*LLQLNL
Trigger: GAGGTTGAGCTGGAGAAGTCATACAAGACTGCCATT...AGCTCCTTGTACAGAGTCTGCTCTGTAATCTGGACTCAACTGTTTGAGCCAGCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR GCA 90 bp ACAACCCTCTGCCCTAAGGAGGACTCCATGCTCTCTGTCACCAAGTCCTTGATGCAAATTTCTTCACACTaGGAAGAATCACTGAGTCAG +
Preference number: 4 (lower is better)
Translates to: TTLCPKEDSMLSVTKSLMQISSH*EESLSQ
Trigger: CTGACTCAGTGATTCTTCGCAGTGTGAAGAAATTTG...CATCAAGGACTTGGTGACAGAGAGCATGGAGTCCTCCTTAGGGCAGAGGGTTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR GCA 90 bp TGTAGAGCTATGACAACCCGCAGCCCTCCTGTGCTTGGCACATCATTATCTGTAAGCCACACCAACTCCTaGGTAGATGCCAGAAAATTT +
Preference number: 4 (lower is better)
Translates to: CRAMTTRSPPVLGTSLSVSHTNS*VDARKF
Trigger: AAATTTTCTGGCATCTACGCAGGAGTTGGTGTGGCT...TACAGATAATGATGTGCCAAGCACAGGAGGGCTGCGGGTTGTCATAGCTCTACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR GCA 90 bp GACTCCATGCTCTCTGTCACCAAGTCCTTGATGGAGACAGGGACCAGCTCCTACGCCAATATTCATAGCTaGTATTATGACACAGAGGAA +
Preference number: 4 (lower is better)
Translates to: DSMLSVTKSLMETGTSSYANIHS*YYDTEE
Trigger: TTCCTCTGTGTCATAATAGCAGCTATGAATATTGGC...GTAGGAGCTGGTCCCTGTCTCCATCAAGGACTTGGTGACAGAGAGCATGGAGTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR GCA 90 bp CAGAATGGAAACGTGTTCCTCTCCCTACTCACGGGTGTCAGAGGTAAAGACATTAAGGCGGATGTTTTCTaGGATAGTGGTGGAGAACAG +
Preference number: 4 (lower is better)
Translates to: QNGNVFLSLLTGVRGKDIKADVF*DSGGEQ
Trigger: CTGTTCTCCACCACTATCGCAGAAAACATCCGCCTT...AATGTCTTTACCTCTGACACCCGTGAGTAGGGAGAGGAACACGTTTCCATTCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR GCA 90 bp AGAGCAGACTCTGTACAAGGAGCTTTCCCAAATGCAAAAGACAACCCTCTGCCCTCCACAGCTGTTCCATaGTCAAAGCCAATGATCACA +
Preference number: 4 (lower is better)
Translates to: RADSVQGAFPNAKDNPLPSTAVP*SKPMIT
Trigger: TGTGATCATTGGCTTTGAGCATGGAACAGCTGTGGA...GGGCAGAGGGTTGTCTTTTGCATTTGGGAAAGCTCCTTGTACAGAGTCTGCTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CCA 90 bp CAGAATGGAAACGTGTTCCTCTCCCTACTCACGGGTGTCAGAGGTAAAGACATTATAATCATGCCTGGCTaGGCCATTCCATGGAGCAAT +
Preference number: 4 (lower is better)
Translates to: QNGNVFLSLLTGVRGKDIIIMPG*AIPWSN
Trigger: ATTGCTCCATGGAATGGCCCAGCCAGGCATGATTAT...AATGTCTTTACCTCTGACACCCGTGAGTAGGGAGAGGAACACGTTTCCATTCTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CCA 90 bp AGCTGGCTCAAACAGTTGAGTCCAGATTACAGAGCAGACTCTGTACAAGGAGCTATAATCATGCCTGGCTaGGCCATTCCATGGAGCAAT +
Preference number: 4 (lower is better)
Translates to: SWLKQLSPDYRADSVQGAIIMPG*AIPWSN
Trigger: ATTGCTCCATGGAATGGCCCAGCCAGGCATGATTAT...AGCTCCTTGTACAGAGTCTGCTCTGTAATCTGGACTCAACTGTTTGAGCCAGCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CCA 90 bp TGTAGAGCTATGACAACCCGCAGCCCTCCTGTGCTTGGCACATCATTATCTGTACCGTTTGTCATGTTCTaGTTGAAGGAGCTGTTGATC +
Preference number: 4 (lower is better)
Translates to: CRAMTTRSPPVLGTSLSVPFVMF*LKELLI
Trigger: GATCAACAGCTCCTTCAACCAGAACATGACAAACGG...TACAGATAATGATGTGCCAAGCACAGGAGGGCTGCGGGTTGTCATAGCTCTACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CCA 90 bp AGCTGGCTCAAACAGTTGAGTCCAGATTACAGAGCAGACTCTGTACAAGGAGCTGCATCCTTGGCAGCTTaGACTATGTCTTCCATTGTC +
Preference number: 4 (lower is better)
Translates to: SWLKQLSPDYRADSVQGAASLAA*TMSSIV
Trigger: GACAATGGAAGACATAGTCCAAGCTGCCAAGGATGC...AGCTCCTTGTACAGAGTCTGCTCTGTAATCTGGACTCAACTGTTTGAGCCAGCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CCA 90 bp TGTAGAGCTATGACAACCCGCAGCCCTCCTGTGCTTGGCACATCATTATCTGTAACTGTTGATAGGCGATaGGCAACTGAGATGATTGTG +
Preference number: 4 (lower is better)
Translates to: CRAMTTRSPPVLGTSLSVTVDRR*ATEMIV
Trigger: CACAATCATCTCAGTTGCCCATCGCCTATCAACAGT...TACAGATAATGATGTGCCAAGCACAGGAGGGCTGCGGGTTGTCATAGCTCTACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CCA 90 bp AGACTCTGTACAAGGAGCTTTCCCAAATGCAAAAGACAACCCTCTGCCCTAAGGAACCGTTCCAACAGCTaGATGCTGGTGCTTTTACCA +
Preference number: 4 (lower is better)
Translates to: RLCTRSFPKCKRQPSALRNRSNS*MLVLLP
Trigger: TGGTAAAAGCACCAGCATCCAGCTGTTGGAACGGTT...CCTTAGGGCAGAGGGTTGTCTTTTGCATTTGGGAAAGCTCCTTGTACAGAGTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR TCA 90 bp AAGGGACATCAGGTGACATGGTGGCAGGGAATGAAAAGTAGAAGCCCTGGTAAACATAGAATCTCTGAATaGGCTGTAGTGCTGTGCTCT +
Preference number: 4 (lower is better)
Translates to: KGHQVTWWQGMKSRSPGKHRISE*AVVLCS
Trigger: AGAGCACAGCACTACAGCTCATTCAGAGATTCTATG...TTTACCAGGGCTTCTACTTTTCATTCCCTGCCACCATGTCACCTGATGTCCCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR TCA 90 bp CAGAATGGAAACGTGTTCCTCTCCCTACTCACGGGTGTCAGAGGTAAAGACATTCATAGAATCTCTGAATaGGCTGTAGTGCTGTGCTCT +
Preference number: 4 (lower is better)
Translates to: QNGNVFLSLLTGVRGKDIHRISE*AVVLCS
Trigger: AGAGCACAGCACTACAGCTCATTCAGAGATTCTATG...AATGTCTTTACCTCTGACACCCGTGAGTAGGGAGAGGAACACGTTTCCATTCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR TCA 90 bp AAGGGACATCAGGTGACATGGTGGCAGGGAATGAAAAGTAGAAGCCCTGGTAAACCTGCAGAAATTGTGTaGAAAGTGATACACAGCCCA +
Preference number: 4 (lower is better)
Translates to: KGHQVTWWQGMKSRSPGKPAEIV*KVIHSP
Trigger: TGGGCTGTGTATCACTTTTCACACAATTTCTGCAGG...TTTACCAGGGCTTCTACTTTTCATTCCCTGCCACCATGTCACCTGATGTCCCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR TCA 90 bp TCCAGAATGGAAACGTGTTCCTCTCCCTACTCACGGGTGTCAGAGGTAAAGACAGTCTTAACATTGCCTTaGAACCAAATTTACGCAGCC +
Preference number: 4 (lower is better)
Translates to: SRMETCSSPYSRVSEVKTVLTLP*NQIYAA
Trigger: GGCTGCGTAAATTTGGTTTCAAGGCAATGTTAAGAC...TGTCTTTACCTCTGACACCCGTGAGTAGGGAGAGGAACACGTTTCCATTCTGGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR TCA 90 bp AGCTGGCTCAAACAGTTGAGTCCAGATTACAGAGCAGACTCTGTACAAGGAGCTAGAATTGGCAAGAAATaGTATCCCCTGGGAAAAGGC +
Preference number: 4 (lower is better)
Translates to: SWLKQLSPDYRADSVQGARIGKK*YPLGKG
Trigger: GCCTTTTCCCAGGGGATATCATTTCTTGCCAATTCT...AGCTCCTTGTACAGAGTCTGCTCTGTAATCTGGACTCAACTGTTTGAGCCAGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR TCA 90 bp TCCAGAATGGAAACGTGTTCCTCTCCCTACTCACGGGTGTCAGAGGTAAAGACATGTTGTCCCCATACTTaGTGTTGTCCATTATGCTAC +
Preference number: 4 (lower is better)
Translates to: SRMETCSSPYSRVSEVKTCCPHT*CCPLCY
Trigger: GTAGCATAATGGACAACATCAAGTATGGGGACAACA...TGTCTTTACCTCTGACACCCGTGAGTAGGGAGAGGAACACGTTTCCATTCTGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR TCA 90 bp AGAGCAGACTCTGTACAAGGAGCTTTCCCAAATGCAAAAGACAACCCTCTGCCCTGTTGTCCCCATACTTaGTGTTGTCCATTATGCTAC +
Preference number: 4 (lower is better)
Translates to: RADSVQGAFPNAKDNPLPCCPHT*CCPLCY
Trigger: GTAGCATAATGGACAACATCAAGTATGGGGACAACA...GGGCAGAGGGTTGTCTTTTGCATTTGGGAAAGCTCCTTGTACAGAGTCTGCTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR TCA 90 bp TGTAGAGCTATGACAACCCGCAGCCCTCCTGTGCTTGGCACATCATTATCTGTAATAGTAGACAAGCGATaGGCAATGACAATACAGGTC +
Preference number: 4 (lower is better)
Translates to: CRAMTTRSPPVLGTSLSVIVDKR*AMTIQV
Trigger: GACCTGTATTGTCATTGCTCATCGCTTGTCTACTAT...TACAGATAATGATGTGCCAAGCACAGGAGGGCTGCGGGTTGTCATAGCTCTACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR TCA 90 bp ACAGAGCAGACTCTGTACAAGGAGCTTTCCCAAATGCAAAAGACAACCCTCTGCGACGGCGATGATATCTaGGTTCTGGATAGTAGACAA +
Preference number: 4 (lower is better)
Translates to: TEQTLYKELSQMQKTTLCDGDDI*VLDSRQ
Trigger: TTGTCTACTATCCAGAACTCAGATATCATCGCCGTC...GCAGAGGGTTGTCTTTTGCATTTGGGAAAGCTCCTTGTACAGAGTCTGCTCTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR TCA 90 bp AAGGGACATCAGGTGACATGGTGGCAGGGAATGAAAAGTAGAAGCCCTGGTAAAGACGGCGATGATATCTaGGTTCTGGATAGTAGACAA +
Preference number: 4 (lower is better)
Translates to: KGHQVTWWQGMKSRSPGKDGDDI*VLDSRQ
Trigger: TTGTCTACTATCCAGAACTCAGATATCATCGCCGTC...TTTACCAGGGCTTCTACTTTTCATTCCCTGCCACCATGTCACCTGATGTCCCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR GCA 90 bp AGCTGGCTCAAACAGTTGAGTCCAGATTACAGAGCAGACTCTGTACAAGGAGCTCATTCCATGGAGCAATaGGCACACACTTCCCATAAA +
Preference number: 4 (lower is better)
Translates to: SWLKQLSPDYRADSVQGAHSMEQ*AHTSHK
Trigger: TTTATGGGAAGTGTGTGCGCATTGCTCCATGGAATG...AGCTCCTTGTACAGAGTCTGCTCTGTAATCTGGACTCAACTGTTTGAGCCAGCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR GCA 90 bp TCCAGAATGGAAACGTGTTCCTCTCCCTACTCACGGGTGTCAGAGGTAAAGACAGTACCAGAAGGCCAGTaGATAACAGAAGAAAATGAG +
Preference number: 4 (lower is better)
Translates to: SRMETCSSPYSRVSEVKTVPEGQ*ITEENE
Trigger: CTCATTTTCTTCTGTTATGCACTGGCCTTCTGGTAC...TGTCTTTACCTCTGACACCCGTGAGTAGGGAGAGGAACACGTTTCCATTCTGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR GCA 90 bp GACTCCATGCTCTCTGTCACCAAGTCCTTGATGGAGACAGGGACCAGCTCCTACTTCCAAACAAGAAGATaGATTGCCAATATTCATAGC +
Preference number: 4 (lower is better)
Translates to: DSMLSVTKSLMETGTSSYFQTRR*IANIHS
Trigger: GCTATGAATATTGGCAATGCATCTTCTTGTTTGGAA...GTAGGAGCTGGTCCCTGTCTCCATCAAGGACTTGGTGACAGAGAGCATGGAGTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR GCA 90 bp ACCCTCTGCCCTAAGGAGGACTCCATGCTCTCTGTCACCAAGTCCTTGATGGAGTTCCAAACAAGAAGATaGATTGCCAATATTCATAGC +
Preference number: 4 (lower is better)
Translates to: TLCPKEDSMLSVTKSLMEFQTRR*IANIHS
Trigger: GCTATGAATATTGGCAATGCATCTTCTTGTTTGGAA...CTCCATCAAGGACTTGGTGACAGAGAGCATGGAGTCCTCCTTAGGGCAGAGGGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR GCA 90 bp TTCCTCTCCCTACTCACGGGTGTCAGAGGTAAAGACATTTGCTTCCCTATAGAAAAGGCGGATGTTTTCTaGGATAGTGGTGGAGAACAG +
Preference number: 4 (lower is better)
Translates to: FLSLLTGVRGKDICFPIEKADVF*DSGGEQ
Trigger: CTGTTCTCCACCACTATCGCAGAAAACATCCGCCTT...TTCTATAGGGAAGCAAATGTCTTTACCTCTGACACCCGTGAGTAGGGAGAGGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR GCA 90 bp AAGGGACATCAGGTGACATGGTGGCAGGGAATGAAAAGTAGAAGCCCTGGTAAATCCACAGCTGTTCCATaGTCAAAGCCAATGATCACA +
Preference number: 4 (lower is better)
Translates to: KGHQVTWWQGMKSRSPGKSTAVP*SKPMIT
Trigger: TGTGATCATTGGCTTTGAGCATGGAACAGCTGTGGA...TTTACCAGGGCTTCTACTTTTCATTCCCTGCCACCATGTCACCTGATGTCCCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR GCA 90 bp TCCAGAATGGAAACGTGTTCCTCTCCCTACTCACGGGTGTCAGAGGTAAAGACAGAGGCCATAGACATTTaGCTTTCTAATGGCAGTCTT +
Preference number: 4 (lower is better)
Translates to: SRMETCSSPYSRVSEVKTEAIDI*LSNGSL
Trigger: AAGACTGCCATTAGAAAGGCAAATGTCTATGGCCTC...TGTCTTTACCTCTGACACCCGTGAGTAGGGAGAGGAACACGTTTCCATTCTGGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CCA 90 bp ACCCTCTGCCCTAAGGAGGACTCCATGCTCTCTGTCACCAAGTCCTTGATGGAGCATACACACTTTTTCTaGAATACTGAGTTCTTGTCT +
Preference number: 4 (lower is better)
Translates to: TLCPKEDSMLSVTKSLMEHTHFF*NTEFLS
Trigger: AGACAAGAACTCAGTATTCCAGAAAAAGTGTGTATG...CTCCATCAAGGACTTGGTGACAGAGAGCATGGAGTCCTCCTTAGGGCAGAGGGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CCA 90 bp GACTCCATGCTCTCTGTCACCAAGTCCTTGATGGAGACAGGGACCAGCTCCTACCATACACACTTTTTCTaGAATACTGAGTTCTTGTCT +
Preference number: 4 (lower is better)
Translates to: DSMLSVTKSLMETGTSSYHTHFF*NTEFLS
Trigger: AGACAAGAACTCAGTATTCCAGAAAAAGTGTGTATG...GTAGGAGCTGGTCCCTGTCTCCATCAAGGACTTGGTGACAGAGAGCATGGAGTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CCA 90 bp CAGAATGGAAACGTGTTCCTCTCCCTACTCACGGGTGTCAGAGGTAAAGACATTCCGTTTGTCATGTTCTaGTTGAAGGAGCTGTTGATC +
Preference number: 4 (lower is better)
Translates to: QNGNVFLSLLTGVRGKDIPFVMF*LKELLI
Trigger: GATCAACAGCTCCTTCAACCAGAACATGACAAACGG...AATGTCTTTACCTCTGACACCCGTGAGTAGGGAGAGGAACACGTTTCCATTCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CCA 90 bp ACAGAGCAGACTCTGTACAAGGAGCTTTCCCAAATGCAAAAGACAACCCTCTGCCCGTTTGTCATGTTCTaGTTGAAGGAGCTGTTGATC +
Preference number: 4 (lower is better)
Translates to: TEQTLYKELSQMQKTTLCPFVMF*LKELLI
Trigger: GATCAACAGCTCCTTCAACCAGAACATGACAAACGG...GCAGAGGGTTGTCTTTTGCATTTGGGAAAGCTCCTTGTACAGAGTCTGCTCTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CCA 90 bp AAGGGACATCAGGTGACATGGTGGCAGGGAATGAAAAGTAGAAGCCCTGGTAAACTGCTGAACACCCAGTaGAGAAGATTTCCAAACAAG +
Preference number: 4 (lower is better)
Translates to: KGHQVTWWQGMKSRSPGKLLNTQ*RRFPNK
Trigger: CTTGTTTGGAAATCTTCTCCACTGGGTGTTCAGCAG...TTTACCAGGGCTTCTACTTTTCATTCCCTGCCACCATGTCACCTGATGTCCCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CCA 90 bp ACAGAGCAGACTCTGTACAAGGAGCTTTCCCAAATGCAAAAGACAACCCTCTGCTGGAAGGTCACATTGTaGAACTCAATTTCGCCCTTG +
Preference number: 4 (lower is better)
Translates to: TEQTLYKELSQMQKTTLCWKVTL*NSISPL
Trigger: CAAGGGCGAAATTGAGTTCCACAATGTGACCTTCCA...GCAGAGGGTTGTCTTTTGCATTTGGGAAAGCTCCTTGTACAGAGTCTGCTCTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CCA 90 bp AGAGCAGACTCTGTACAAGGAGCTTTCCCAAATGCAAAAGACAACCCTCTGCCCATTGTGTGTCCATGTTaGATCTTATTCAGTGCTCCC +
Preference number: 4 (lower is better)
Translates to: RADSVQGAFPNAKDNPLPIVCPC*ILFSAP
Trigger: GGGAGCACTGAATAAGATCCAACATGGACACACAAT...GGGCAGAGGGTTGTCTTTTGCATTTGGGAAAGCTCCTTGTACAGAGTCTGCTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CCA 90 bp AGCTGGCTCAAACAGTTGAGTCCAGATTACAGAGCAGACTCTGTACAAGGAGCTACTGTTGATAGGCGATaGGCAACTGAGATGATTGTG +
Preference number: 4 (lower is better)
Translates to: SWLKQLSPDYRADSVQGATVDRR*ATEMIV
Trigger: CACAATCATCTCAGTTGCCCATCGCCTATCAACAGT...AGCTCCTTGTACAGAGTCTGCTCTGTAATCTGGACTCAACTGTTTGAGCCAGCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CCA 90 bp AAGGGACATCAGGTGACATGGTGGCAGGGAATGAAAAGTAGAAGCCCTGGTAAAACTGTTGATAGGCGATaGGCAACTGAGATGATTGTG +
Preference number: 4 (lower is better)
Translates to: KGHQVTWWQGMKSRSPGKTVDRR*ATEMIV
Trigger: CACAATCATCTCAGTTGCCCATCGCCTATCAACAGT...TTTACCAGGGCTTCTACTTTTCATTCCCTGCCACCATGTCACCTGATGTCCCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CCA 90 bp CAGAATGGAAACGTGTTCCTCTCCCTACTCACGGGTGTCAGAGGTAAAGACATTGGAGCTCTCCAGATTTaGCAAAATTGTAACCCTGCA +
Preference number: 4 (lower is better)
Translates to: QNGNVFLSLLTGVRGKDIGALQI*QNCNPA
Trigger: TGCAGGGTTACAATTTTGCCAAATCTGGAGAGCTCC...AATGTCTTTACCTCTGACACCCGTGAGTAGGGAGAGGAACACGTTTCCATTCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CCA 90 bp TTCCTCTCCCTACTCACGGGTGTCAGAGGTAAAGACATTTGCTTCCCTATAGAAAACCGTTCCAACAGCTaGATGCTGGTGCTTTTACCA +
Preference number: 4 (lower is better)
Translates to: FLSLLTGVRGKDICFPIENRSNS*MLVLLP
Trigger: TGGTAAAAGCACCAGCATCCAGCTGTTGGAACGGTT...TTCTATAGGGAAGCAAATGTCTTTACCTCTGACACCCGTGAGTAGGGAGAGGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CCA 90 bp AGCTGGCTCAAACAGTTGAGTCCAGATTACAGAGCAGACTCTGTACAAGGAGCTAATAACACGGGCTCCTaGGAGACAATCCCAATGTTT +
Preference number: 4 (lower is better)
Translates to: SWLKQLSPDYRADSVQGANNTGS*ETIPMF
Trigger: AAACATTGGGATTGTCTCCCAGGAGCCCGTGTTATT...AGCTCCTTGTACAGAGTCTGCTCTGTAATCTGGACTCAACTGTTTGAGCCAGCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CCA 90 bp CAGAATGGAAACGTGTTCCTCTCCCTACTCACGGGTGTCAGAGGTAAAGACATTAATAACACGGGCTCCTaGGAGACAATCCCAATGTTT +
Preference number: 4 (lower is better)
Translates to: QNGNVFLSLLTGVRGKDINNTGS*ETIPMF
Trigger: AAACATTGGGATTGTCTCCCAGGAGCCCGTGTTATT...AATGTCTTTACCTCTGACACCCGTGAGTAGGGAGAGGAACACGTTTCCATTCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR TCA 90 bp TGTAGAGCTATGACAACCCGCAGCCCTCCTGTGCTTGGCACATCATTATCTGTATCTGATTCGAAAGCATaGTTCTCCTCTCCAAATTTC +
Preference number: 4 (lower is better)
Translates to: CRAMTTRSPPVLGTSLSVSDSKA*FSSPNF
Trigger: GAAATTTGGAGAGGAGAATCATGCTTTCGAATCAGA...TACAGATAATGATGTGCCAAGCACAGGAGGGCTGCGGGTTGTCATAGCTCTACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR TCA 90 bp TGTAGAGCTATGACAACCCGCAGCCCTCCTGTGCTTGGCACATCATTATCTGTAGTTATGGAAACCATCTaGTTCGAAAGCATGATTCTC +
Preference number: 4 (lower is better)
Translates to: CRAMTTRSPPVLGTSLSVVMETI*FESMIL
Trigger: GAGAATCATGCTTTCGAATCAGATGGTTTCCATAAC...TACAGATAATGATGTGCCAAGCACAGGAGGGCTGCGGGTTGTCATAGCTCTACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
CDS-3UTR TCA 90 bp TGTAGAGCTATGACAACCCGCAGCCCTCCTGTGCTTGGCACATCATTATCTGTAACCCACAACCTTATTTaGAAGTATCCTAGGATAAGG +
Preference number: 4 (lower is better)
Translates to: CRAMTTRSPPVLGTSLSVTHNLI*KYPRIR
Trigger: CCTTATCCTAGGATACTTTCAAATAAGGTTGTGGGT...TACAGATAATGATGTGCCAAGCACAGGAGGGCTGCGGGTTGTCATAGCTCTACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR TCA 90 bp AAGGGACATCAGGTGACATGGTGGCAGGGAATGAAAAGTAGAAGCCCTGGTAAACAAATTCCCCAGCGCTaGGCAAACATAAGATTTTTC +
Preference number: 4 (lower is better)
Translates to: KGHQVTWWQGMKSRSPGKQIPQR*ANIRFF
Trigger: GAAAAATCTTATGTTTGCTCAGCGCTGGGGAATTTG...TTTACCAGGGCTTCTACTTTTCATTCCCTGCCACCATGTCACCTGATGTCCCTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR TCA 90 bp AGACTCTGTACAAGGAGCTTTCCCAAATGCAAAAGACAACCCTCTGCCCTAAGGCAAATTCCCCAGCGCTaGGCAAACATAAGATTTTTC +
Preference number: 4 (lower is better)
Translates to: RLCTRSFPKCKRQPSALRQIPQR*ANIRFF
Trigger: GAAAAATCTTATGTTTGCTCAGCGCTGGGGAATTTG...CCTTAGGGCAGAGGGTTGTCTTTTGCATTTGGGAAAGCTCCTTGTACAGAGTCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR TCA 90 bp ACAGAGCAGACTCTGTACAAGGAGCTTTCCCAAATGCAAAAGACAACCCTCTGCCAAATTCCCCAGCGCTaGGCAAACATAAGATTTTTC +
Preference number: 4 (lower is better)
Translates to: TEQTLYKELSQMQKTTLCQIPQR*ANIRFF
Trigger: GAAAAATCTTATGTTTGCTCAGCGCTGGGGAATTTG...GCAGAGGGTTGTCTTTTGCATTTGGGAAAGCTCCTTGTACAGAGTCTGCTCTGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR TCA 90 bp CAGAATGGAAACGTGTTCCTCTCCCTACTCACGGGTGTCAGAGGTAAAGACATTGACAATCCCAATGTTTaGACGGAGGAACTGAACATT +
Preference number: 4 (lower is better)
Translates to: QNGNVFLSLLTGVRGKDIDNPNV*TEELNI
Trigger: AATGTTCAGTTCCTCCGTTCAAACATTGGGATTGTC...AATGTCTTTACCTCTGACACCCGTGAGTAGGGAGAGGAACACGTTTCCATTCTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR TCA 90 bp AGACTCTGTACAAGGAGCTTTCCCAAATGCAAAAGACAACCCTCTGCCCTAAGGGACAATCCCAATGTTTaGACGGAGGAACTGAACATT +
Preference number: 4 (lower is better)
Translates to: RLCTRSFPKCKRQPSALRDNPNV*TEELNI
Trigger: AATGTTCAGTTCCTCCGTTCAAACATTGGGATTGTC...CCTTAGGGCAGAGGGTTGTCTTTTGCATTTGGGAAAGCTCCTTGTACAGAGTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR TCA 90 bp AAGGGACATCAGGTGACATGGTGGCAGGGAATGAAAAGTAGAAGCCCTGGTAAAATAGTAGACAAGCGATaGGCAATGACAATACAGGTC +
Preference number: 4 (lower is better)
Translates to: KGHQVTWWQGMKSRSPGKIVDKR*AMTIQV
Trigger: GACCTGTATTGTCATTGCTCATCGCTTGTCTACTAT...TTTACCAGGGCTTCTACTTTTCATTCCCTGCCACCATGTCACCTGATGTCCCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR TCA 90 bp ACAGAGCAGACTCTGTACAAGGAGCTTTCCCAAATGCAAAAGACAACCCTCTGCATAGTAGACAAGCGATaGGCAATGACAATACAGGTC +
Preference number: 4 (lower is better)
Translates to: TEQTLYKELSQMQKTTLCIVDKR*AMTIQV
Trigger: GACCTGTATTGTCATTGCTCATCGCTTGTCTACTAT...GCAGAGGGTTGTCTTTTGCATTTGGGAAAGCTCCTTGTACAGAGTCTGCTCTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR GCA 90 bp AGAGCAGACTCTGTACAAGGAGCTTTCCCAAATGCAAAAGACAACCCTCTGCCCCAAATTTCTTCACACTaGGAAGAATCACTGAGTCAG +
Preference number: 4 (lower is better)
Translates to: RADSVQGAFPNAKDNPLPQISSH*EESLSQ
Trigger: CTGACTCAGTGATTCTTCGCAGTGTGAAGAAATTTG...GGGCAGAGGGTTGTCTTTTGCATTTGGGAAAGCTCCTTGTACAGAGTCTGCTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR GCA 90 bp ACAGAGCAGACTCTGTACAAGGAGCTTTCCCAAATGCAAAAGACAACCCTCTGCGTACCAGAAGGCCAGTaGATAACAGAAGAAAATGAG +
Preference number: 4 (lower is better)
Translates to: TEQTLYKELSQMQKTTLCVPEGQ*ITEENE
Trigger: CTCATTTTCTTCTGTTATGCACTGGCCTTCTGGTAC...GCAGAGGGTTGTCTTTTGCATTTGGGAAAGCTCCTTGTACAGAGTCTGCTCTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR GCA 90 bp TGTAGAGCTATGACAACCCGCAGCCCTCCTGTGCTTGGCACATCATTATCTGTACATAATGAAGTTGTATaGATTAGCATCCTTGGCAGC +
Preference number: 4 (lower is better)
Translates to: CRAMTTRSPPVLGTSLSVHNEVV*ISILGS
Trigger: GCTGCCAAGGATGCTAATGCATACAACTTCATTATG...TACAGATAATGATGTGCCAAGCACAGGAGGGCTGCGGGTTGTCATAGCTCTACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR GCA 90 bp AGCTGGCTCAAACAGTTGAGTCCAGATTACAGAGCAGACTCTGTACAAGGAGCTTTATCTTCTTGGCTTTaGAGGGTCACAAGCATGAAG +
Preference number: 4 (lower is better)
Translates to: SWLKQLSPDYRADSVQGALSSWL*RVTSMK
Trigger: CTTCATGCTTGTGACCCTGCAAAGCCAAGAAGATAA...AGCTCCTTGTACAGAGTCTGCTCTGTAATCTGGACTCAACTGTTTGAGCCAGCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR GCA 90 bp ACAGAGCAGACTCTGTACAAGGAGCTTTCCCAAATGCAAAAGACAACCCTCTGCTTATCTTCTTGGCTTTaGAGGGTCACAAGCATGAAG +
Preference number: 4 (lower is better)
Translates to: TEQTLYKELSQMQKTTLCLSSWL*RVTSMK
Trigger: CTTCATGCTTGTGACCCTGCAAAGCCAAGAAGATAA...GCAGAGGGTTGTCTTTTGCATTTGGGAAAGCTCCTTGTACAGAGTCTGCTCTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR GCA 90 bp AGACTCTGTACAAGGAGCTTTCCCAAATGCAAAAGACAACCCTCTGCCCTAAGGGTCCCATTTTTCACCTaGTCCACTGTACACATCAAT +
Preference number: 4 (lower is better)
Translates to: RLCTRSFPKCKRQPSALRVPFFT*STVHIN
Trigger: ATTGATGTGTACAGTGGAGCAGGTGAAAAATGGGAC...CCTTAGGGCAGAGGGTTGTCTTTTGCATTTGGGAAAGCTCCTTGTACAGAGTCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR GCA 90 bp AAGGGACATCAGGTGACATGGTGGCAGGGAATGAAAAGTAGAAGCCCTGGTAAAGTCCCATTTTTCACCTaGTCCACTGTACACATCAAT +
Preference number: 4 (lower is better)
Translates to: KGHQVTWWQGMKSRSPGKVPFFT*STVHIN
Trigger: ATTGATGTGTACAGTGGAGCAGGTGAAAAATGGGAC...TTTACCAGGGCTTCTACTTTTCATTCCCTGCCACCATGTCACCTGATGTCCCTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR GCA 90 bp CAAACTGAAATTATTACTGAAAGCCACTCAAGATTAGTTTGGATGCCAGTGGATACTGCTCCCAACGAATaGCAGCGTCTGCCCAGGATC +
Preference number: 4 (lower is better)
Translates to: QTEIITESHSRLVWMPVDTAPNE*QRLPRI
Trigger: GATCCTGGGCAGACGCTGGCATTCGTTGGGAGCAGT...ATCCACTGGCATCCAAACTAATCTTGAGTGGCTTTCAGTAATAATTTCAGTTTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CCA 90 bp TTCCTCTCCCTACTCACGGGTGTCAGAGGTAAAGACATTTGCTTCCCTATAGAACTGCTGAACACCCAGTaGAGAAGATTTCCAAACAAG +
Preference number: 4 (lower is better)
Translates to: FLSLLTGVRGKDICFPIELLNTQ*RRFPNK
Trigger: CTTGTTTGGAAATCTTCTCCACTGGGTGTTCAGCAG...TTCTATAGGGAAGCAAATGTCTTTACCTCTGACACCCGTGAGTAGGGAGAGGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CCA 90 bp AGACTCTGTACAAGGAGCTTTCCCAAATGCAAAAGACAACCCTCTGCCCTAAGGTTGTTTGGAAAATACTaGAAGCTGCTGAACACCCAG +
Preference number: 4 (lower is better)
Translates to: RLCTRSFPKCKRQPSALRLFGKY*KLLNTQ
Trigger: CTGGGTGTTCAGCAGCTTCCAGTATTTTCCAAACAA...CCTTAGGGCAGAGGGTTGTCTTTTGCATTTGGGAAAGCTCCTTGTACAGAGTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CCA 90 bp CAGAATGGAAACGTGTTCCTCTCCCTACTCACGGGTGTCAGAGGTAAAGACATTATTGTGTGTCCATGTTaGATCTTATTCAGTGCTCCC +
Preference number: 4 (lower is better)
Translates to: QNGNVFLSLLTGVRGKDIIVCPC*ILFSAP
Trigger: GGGAGCACTGAATAAGATCCAACATGGACACACAAT...AATGTCTTTACCTCTGACACCCGTGAGTAGGGAGAGGAACACGTTTCCATTCTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CCA 90 bp TTCCTCTCCCTACTCACGGGTGTCAGAGGTAAAGACATTTGCTTCCCTATAGAATCTAACAGTTCTTCATaGGTGCCTCTTTCCACAGCT +
Preference number: 4 (lower is better)
Translates to: FLSLLTGVRGKDICFPIESNSSS*VPLSTA
Trigger: AGCTGTGGAAAGAGGCACCCATGAAGAACTGTTAGA...TTCTATAGGGAAGCAAATGTCTTTACCTCTGACACCCGTGAGTAGGGAGAGGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CCA 90 bp TTCCTCTCCCTACTCACGGGTGTCAGAGGTAAAGACATTTGCTTCCCTATAGAAGGAGCTCTCCAGATTTaGCAAAATTGTAACCCTGCA +
Preference number: 4 (lower is better)
Translates to: FLSLLTGVRGKDICFPIEGALQI*QNCNPA
Trigger: TGCAGGGTTACAATTTTGCCAAATCTGGAGAGCTCC...TTCTATAGGGAAGCAAATGTCTTTACCTCTGACACCCGTGAGTAGGGAGAGGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CCA 90 bp TTCCTCTCCCTACTCACGGGTGTCAGAGGTAAAGACATTTGCTTCCCTATAGAAAATAACACGGGCTCCTaGGAGACAATCCCAATGTTT +
Preference number: 4 (lower is better)
Translates to: FLSLLTGVRGKDICFPIENNTGS*ETIPMF
Trigger: AAACATTGGGATTGTCTCCCAGGAGCCCGTGTTATT...TTCTATAGGGAAGCAAATGTCTTTACCTCTGACACCCGTGAGTAGGGAGAGGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CCA 90 bp AAGGGACATCAGGTGACATGGTGGCAGGGAATGAAAAGTAGAAGCCCTGGTAAATCCATCAGTTTCTTATaGGTCCCCTTTTCAATCACC +
Preference number: 4 (lower is better)
Translates to: KGHQVTWWQGMKSRSPGKSISFL*VPFSIT
Trigger: GGTGATTGAAAAGGGGACCCATAAGAAACTGATGGA...TTTACCAGGGCTTCTACTTTTCATTCCCTGCCACCATGTCACCTGATGTCCCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR TCA 90 bp AGACTCTGTACAAGGAGCTTTCCCAAATGCAAAAGACAACCCTCTGCCCTAAGGTCTGATTCGAAAGCATaGTTCTCCTCTCCAAATTTC +
Preference number: 4 (lower is better)
Translates to: RLCTRSFPKCKRQPSALRSDSKA*FSSPNF
Trigger: GAAATTTGGAGAGGAGAATCATGCTTTCGAATCAGA...CCTTAGGGCAGAGGGTTGTCTTTTGCATTTGGGAAAGCTCCTTGTACAGAGTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR TCA 90 bp AGCTGGCTCAAACAGTTGAGTCCAGATTACAGAGCAGACTCTGTACAAGGAGCTTCTGATTCGAAAGCATaGTTCTCCTCTCCAAATTTC +
Preference number: 4 (lower is better)
Translates to: SWLKQLSPDYRADSVQGASDSKA*FSSPNF
Trigger: GAAATTTGGAGAGGAGAATCATGCTTTCGAATCAGA...AGCTCCTTGTACAGAGTCTGCTCTGTAATCTGGACTCAACTGTTTGAGCCAGCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR TCA 90 bp AGCTGGCTCAAACAGTTGAGTCCAGATTACAGAGCAGACTCTGTACAAGGAGCTACCCACAACCTTATTTaGAAGTATCCTAGGATAAGG +
Preference number: 4 (lower is better)
Translates to: SWLKQLSPDYRADSVQGATHNLI*KYPRIR
Trigger: CCTTATCCTAGGATACTTTCAAATAAGGTTGTGGGT...AGCTCCTTGTACAGAGTCTGCTCTGTAATCTGGACTCAACTGTTTGAGCCAGCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR GCA 90 bp AAGGGACATCAGGTGACATGGTGGCAGGGAATGAAAAGTAGAAGCCCTGGTAAACAAATTTCTTCACACTaGGAAGAATCACTGAGTCAG +
Preference number: 4 (lower is better)
Translates to: KGHQVTWWQGMKSRSPGKQISSH*EESLSQ
Trigger: CTGACTCAGTGATTCTTCGCAGTGTGAAGAAATTTG...TTTACCAGGGCTTCTACTTTTCATTCCCTGCCACCATGTCACCTGATGTCCCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR GCA 90 bp CAAACTGAAATTATTACTGAAAGCCACTCAAGATTAGTTTGGATGCCAGTGGATGCTACCCTTTGCTTCTaGCCACCACTCATCTGGCCT +
Preference number: 4 (lower is better)
Translates to: QTEIITESHSRLVWMPVDATLCF*PPLIWP
Trigger: AGGCCAGATGAGTGGTGGGCAGAAGCAAAGGGTAGC...ATCCACTGGCATCCAAACTAATCTTGAGTGGCTTTCAGTAATAATTTCAGTTTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CCA 90 bp TTCCTCTCCCTACTCACGGGTGTCAGAGGTAAAGACATTTGCTTCCCTATAGAAATTGTGTGTCCATGTTaGATCTTATTCAGTGCTCCC +
Preference number: 4 (lower is better)
Translates to: FLSLLTGVRGKDICFPIEIVCPC*ILFSAP
Trigger: GGGAGCACTGAATAAGATCCAACATGGACACACAAT...TTCTATAGGGAAGCAAATGTCTTTACCTCTGACACCCGTGAGTAGGGAGAGGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR TCA 90 bp ACTGAAATTATTACTGAAAGCCACTCAAGATTAGTTTGGATGCCAGTGGATACTTCAACTCAAGCTCCGTaGACTTGGCCACACTCAGAC +
Preference number: 4 (lower is better)
Translates to: TEIITESHSRLVWMPVDTSTQAP*TWPHSD
Trigger: GTCTGAGTGTGGCCAAGTTCACGGAGCTTGAGTTGA...AGTATCCACTGGCATCCAAACTAATCTTGAGTGGCTTTCAGTAATAATTTCAGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR TCA 90 bp AGACTCTGTACAAGGAGCTTTCCCAAATGCAAAAGACAACCCTCTGCCCTAAGGCATGCTGTAAATCTCTaGCCTTTGTTGTTCTTTATC +
Preference number: 4 (lower is better)
Translates to: RLCTRSFPKCKRQPSALRHAVNL*PLLFFI
Trigger: GATAAAGAACAACAAAGGTCAGAGATTTACAGCATG...CCTTAGGGCAGAGGGTTGTCTTTTGCATTTGGGAAAGCTCCTTGTACAGAGTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR TCA 90 bp AAGGGACATCAGGTGACATGGTGGCAGGGAATGAAAAGTAGAAGCCCTGGTAAACATGCTGTAAATCTCTaGCCTTTGTTGTTCTTTATC +
Preference number: 4 (lower is better)
Translates to: KGHQVTWWQGMKSRSPGKHAVNL*PLLFFI
Trigger: GATAAAGAACAACAAAGGTCAGAGATTTACAGCATG...TTTACCAGGGCTTCTACTTTTCATTCCCTGCCACCATGTCACCTGATGTCCCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR TCA 90 bp CAAACTGAAATTATTACTGAAAGCCACTCAAGATTAGTTTGGATGCCAGTGGATGAGCCAGTAGCCCCTTaGACTTGGGAAGCATCTGTA +
Preference number: 4 (lower is better)
Translates to: QTEIITESHSRLVWMPVDEPVAP*TWEASV
Trigger: TACAGATGCTTCCCAAGTTCAAGGGGCTACTGGCTC...ATCCACTGGCATCCAAACTAATCTTGAGTGGCTTTCAGTAATAATTTCAGTTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR GCA 90 bp AAGGGACATCAGGTGACATGGTGGCAGGGAATGAAAAGTAGAAGCCCTGGTAAAGCCAATATTCATAGCTaGTATTATGACACAGAGGAA +
Preference number: 4 (lower is better)
Translates to: KGHQVTWWQGMKSRSPGKANIHS*YYDTEE
Trigger: TTCCTCTGTGTCATAATAGCAGCTATGAATATTGGC...TTTACCAGGGCTTCTACTTTTCATTCCCTGCCACCATGTCACCTGATGTCCCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR GCA 90 bp CAAACTGAAATTATTACTGAAAGCCACTCAAGATTAGTTTGGATGCCAGTGGATAGCCGTTGCGCTCATTaGAATGGAAGAGACCACCCT +
Preference number: 4 (lower is better)
Translates to: QTEIITESHSRLVWMPVDSRCAH*NGRDHP
Trigger: AGGGTGGTCTCTTCCATTGCAATGAGCGCAACGGCT...ATCCACTGGCATCCAAACTAATCTTGAGTGGCTTTCAGTAATAATTTCAGTTTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CCA 90 bp CAAACTGAAATTATTACTGAAAGCCACTCAAGATTAGTTTGGATGCCAGTGGATCCAACAGCTGGATGCTaGTGCTTTTACCACACCCAC +
Preference number: 4 (lower is better)
Translates to: QTEIITESHSRLVWMPVDPTAGC*CFYHTH
Trigger: GTGGGTGTGGTAAAAGCACCAGCATCCAGCTGTTGG...ATCCACTGGCATCCAAACTAATCTTGAGTGGCTTTCAGTAATAATTTCAGTTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR TCA 90 bp CAAACTGAAATTATTACTGAAAGCCACTCAAGATTAGTTTGGATGCCAGTGGATTACGCAGCCTTTTTGTaGGGAGCTCTCCAGATTTGG +
Preference number: 4 (lower is better)
Translates to: QTEIITESHSRLVWMPVDYAAFL*GALQIW
Trigger: CCAAATCTGGAGAGCTCCTCACAAAAAGGCTGCGTA...ATCCACTGGCATCCAAACTAATCTTGAGTGGCTTTCAGTAATAATTTCAGTTTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CCA 90 bp CAAACTGAAATTATTACTGAAAGCCACTCAAGATTAGTTTGGATGCCAGTGGATCACAATAATCATGCCTaGCTGGGCCATTCCATGGAG +
Preference number: 4 (lower is better)
Translates to: QTEIITESHSRLVWMPVDHNNHA*LGHSME
Trigger: CTCCATGGAATGGCCCAGCCAGGCATGATTATTGTG...ATCCACTGGCATCCAAACTAATCTTGAGTGGCTTTCAGTAATAATTTCAGTTTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CCA 90 bp ACTGAAATTATTACTGAAAGCCACTCAAGATTAGTTTGGATGCCAGTGGATACTCACAATAATCATGCCTaGCTGGGCCATTCCATGGAG +
Preference number: 4 (lower is better)
Translates to: TEIITESHSRLVWMPVDTHNNHA*LGHSME
Trigger: CTCCATGGAATGGCCCAGCCAGGCATGATTATTGTG...AGTATCCACTGGCATCCAAACTAATCTTGAGTGGCTTTCAGTAATAATTTCAGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR TCA 90 bp CAAACTGAAATTATTACTGAAAGCCACTCAAGATTAGTTTGGATGCCAGTGGATAATGGCAGTCTTGTATaGCTTCTCCAGCTCAACCTC +
Preference number: 4 (lower is better)
Translates to: QTEIITESHSRLVWMPVDNGSLV*LLQLNL
Trigger: GAGGTTGAGCTGGAGAAGTCATACAAGACTGCCATT...ATCCACTGGCATCCAAACTAATCTTGAGTGGCTTTCAGTAATAATTTCAGTTTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR TCA 90 bp ACTGAAATTATTACTGAAAGCCACTCAAGATTAGTTTGGATGCCAGTGGATACTAGAATTGGCAAGAAATaGTATCCCCTGGGAAAAGGC +
Preference number: 4 (lower is better)
Translates to: TEIITESHSRLVWMPVDTRIGKK*YPLGKG
Trigger: GCCTTTTCCCAGGGGATATCATTTCTTGCCAATTCT...AGTATCCACTGGCATCCAAACTAATCTTGAGTGGCTTTCAGTAATAATTTCAGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR TCA 90 bp CAAACTGAAATTATTACTGAAAGCCACTCAAGATTAGTTTGGATGCCAGTGGATAGAATTGGCAAGAAATaGTATCCCCTGGGAAAAGGC +
Preference number: 4 (lower is better)
Translates to: QTEIITESHSRLVWMPVDRIGKK*YPLGKG
Trigger: GCCTTTTCCCAGGGGATATCATTTCTTGCCAATTCT...ATCCACTGGCATCCAAACTAATCTTGAGTGGCTTTCAGTAATAATTTCAGTTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR GCA 90 bp CAAACTGAAATTATTACTGAAAGCCACTCAAGATTAGTTTGGATGCCAGTGGATCATTCCATGGAGCAATaGGCACACACTTCCCATAAA +
Preference number: 4 (lower is better)
Translates to: QTEIITESHSRLVWMPVDHSMEQ*AHTSHK
Trigger: TTTATGGGAAGTGTGTGCGCATTGCTCCATGGAATG...ATCCACTGGCATCCAAACTAATCTTGAGTGGCTTTCAGTAATAATTTCAGTTTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CCA 90 bp ACTGAAATTATTACTGAAAGCCACTCAAGATTAGTTTGGATGCCAGTGGATACTTCTAACAGTTCTTCATaGGTGCCTCTTTCCACAGCT +
Preference number: 4 (lower is better)
Translates to: TEIITESHSRLVWMPVDTSNSSS*VPLSTA
Trigger: AGCTGTGGAAAGAGGCACCCATGAAGAACTGTTAGA...AGTATCCACTGGCATCCAAACTAATCTTGAGTGGCTTTCAGTAATAATTTCAGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR TCA 90 bp CAAACTGAAATTATTACTGAAAGCCACTCAAGATTAGTTTGGATGCCAGTGGATCATAACAGAAGAAAATaGGACACCACATGTACCCAG +
Preference number: 4 (lower is better)
Translates to: QTEIITESHSRLVWMPVDHNRRK*DTTCTQ
Trigger: CTGGGTACATGTGGTGTCTCATTTTCTTCTGTTATG...ATCCACTGGCATCCAAACTAATCTTGAGTGGCTTTCAGTAATAATTTCAGTTTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR TCA 90 bp ACTGAAATTATTACTGAAAGCCACTCAAGATTAGTTTGGATGCCAGTGGATACTGTCTTAACATTGCCTTaGAACCAAATTTACGCAGCC +
Preference number: 4 (lower is better)
Translates to: TEIITESHSRLVWMPVDTVLTLP*NQIYAA
Trigger: GGCTGCGTAAATTTGGTTTCAAGGCAATGTTAAGAC...AGTATCCACTGGCATCCAAACTAATCTTGAGTGGCTTTCAGTAATAATTTCAGT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR TCA 90 bp CAAACTGAAATTATTACTGAAAGCCACTCAAGATTAGTTTGGATGCCAGTGGATGACAATCCCAATGTTTaGACGGAGGAACTGAACATT +
Preference number: 4 (lower is better)
Translates to: QTEIITESHSRLVWMPVDDNPNV*TEELNI
Trigger: AATGTTCAGTTCCTCCGTTCAAACATTGGGATTGTC...ATCCACTGGCATCCAAACTAATCTTGAGTGGCTTTCAGTAATAATTTCAGTTTG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR TCA 90 bp ACTGAAATTATTACTGAAAGCCACTCAAGATTAGTTTGGATGCCAGTGGATACTTGTTGTCCCCATACTTaGTGTTGTCCATTATGCTAC +
Preference number: 4 (lower is better)
Translates to: TEIITESHSRLVWMPVDTCCPHT*CCPLCY
Trigger: GTAGCATAATGGACAACATCAAGTATGGGGACAACA...AGTATCCACTGGCATCCAAACTAATCTTGAGTGGCTTTCAGTAATAATTTCAGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR GCA 90 bp ACTGAAATTATTACTGAAAGCCACTCAAGATTAGTTTGGATGCCAGTGGATACTGTACCAGAAGGCCAGTaGATAACAGAAGAAAATGAG +
Preference number: 4 (lower is better)
Translates to: TEIITESHSRLVWMPVDTVPEGQ*ITEENE
Trigger: CTCATTTTCTTCTGTTATGCACTGGCCTTCTGGTAC...AGTATCCACTGGCATCCAAACTAATCTTGAGTGGCTTTCAGTAATAATTTCAGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR GCA 90 bp CAAACTGAAATTATTACTGAAAGCCACTCAAGATTAGTTTGGATGCCAGTGGATGAGGCCATAGACATTTaGCTTTCTAATGGCAGTCTT +
Preference number: 4 (lower is better)
Translates to: QTEIITESHSRLVWMPVDEAIDI*LSNGSL
Trigger: AAGACTGCCATTAGAAAGGCAAATGTCTATGGCCTC...ATCCACTGGCATCCAAACTAATCTTGAGTGGCTTTCAGTAATAATTTCAGTTTG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR GCA 90 bp CAAACTGAAATTATTACTGAAAGCCACTCAAGATTAGTTTGGATGCCAGTGGATGTCCCATTTTTCACCTaGTCCACTGTACACATCAAT +
Preference number: 4 (lower is better)
Translates to: QTEIITESHSRLVWMPVDVPFFT*STVHIN
Trigger: ATTGATGTGTACAGTGGAGCAGGTGAAAAATGGGAC...ATCCACTGGCATCCAAACTAATCTTGAGTGGCTTTCAGTAATAATTTCAGTTTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CCA 90 bp CAAACTGAAATTATTACTGAAAGCCACTCAAGATTAGTTTGGATGCCAGTGGATTCCATCAGTTTCTTATaGGTCCCCTTTTCAATCACC +
Preference number: 4 (lower is better)
Translates to: QTEIITESHSRLVWMPVDSISFL*VPFSIT
Trigger: GGTGATTGAAAAGGGGACCCATAAGAAACTGATGGA...ATCCACTGGCATCCAAACTAATCTTGAGTGGCTTTCAGTAATAATTTCAGTTTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR TCA 90 bp ACTGAAATTATTACTGAAAGCCACTCAAGATTAGTTTGGATGCCAGTGGATACTACCCACAACCTTATTTaGAAGTATCCTAGGATAAGG +
Preference number: 4 (lower is better)
Translates to: TEIITESHSRLVWMPVDTTHNLI*KYPRIR
Trigger: CCTTATCCTAGGATACTTTCAAATAAGGTTGTGGGT...AGTATCCACTGGCATCCAAACTAATCTTGAGTGGCTTTCAGTAATAATTTCAGT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR TCA 90 bp CAAACTGAAATTATTACTGAAAGCCACTCAAGATTAGTTTGGATGCCAGTGGATCATGCTGTAAATCTCTaGCCTTTGTTGTTCTTTATC +
Preference number: 4 (lower is better)
Translates to: QTEIITESHSRLVWMPVDHAVNL*PLLFFI
Trigger: GATAAAGAACAACAAAGGTCAGAGATTTACAGCATG...ATCCACTGGCATCCAAACTAATCTTGAGTGGCTTTCAGTAATAATTTCAGTTTG
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR GCA 90 bp ACTGAAATTATTACTGAAAGCCACTCAAGATTAGTTTGGATGCCAGTGGATACTGCCAATATTCATAGCTaGTATTATGACACAGAGGAA +
Preference number: 4 (lower is better)
Translates to: TEIITESHSRLVWMPVDTANIHS*YYDTEE
Trigger: TTCCTCTGTGTCATAATAGCAGCTATGAATATTGGC...AGTATCCACTGGCATCCAAACTAATCTTGAGTGGCTTTCAGTAATAATTTCAGT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR GCA 90 bp ACTGAAATTATTACTGAAAGCCACTCAAGATTAGTTTGGATGCCAGTGGATACTTTCCAAACAAGAAGATaGATTGCCAATATTCATAGC +
Preference number: 4 (lower is better)
Translates to: TEIITESHSRLVWMPVDTFQTRR*IANIHS
Trigger: GCTATGAATATTGGCAATGCATCTTCTTGTTTGGAA...AGTATCCACTGGCATCCAAACTAATCTTGAGTGGCTTTCAGTAATAATTTCAGT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CCA 90 bp ACTGAAATTATTACTGAAAGCCACTCAAGATTAGTTTGGATGCCAGTGGATACTCATACACACTTTTTCTaGAATACTGAGTTCTTGTCT +
Preference number: 4 (lower is better)
Translates to: TEIITESHSRLVWMPVDTHTHFF*NTEFLS
Trigger: AGACAAGAACTCAGTATTCCAGAAAAAGTGTGTATG...AGTATCCACTGGCATCCAAACTAATCTTGAGTGGCTTTCAGTAATAATTTCAGT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS GCA 90 bp TTGGGTTTCCGTATGAGGGCGCGGGCGATGGCTACCCTTTGCTTCTaGCCACCACTCATCTGGCCTCCTCCTTCTCCAACTAGGGTGTCA +
Preference number: 5 (lower is better)
Translates to: LGFRMRARAMATLCF*PPLIWPPPSPTRVS
Trigger: TGACACCCTAGTTGGAGAAGGAGGAGGCCAGATGAGTGGTGGGCAGAAGCAAAGGGTAGCCATCGCCCGCGCCCTCATACGGAAACCCAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS GCA 90 bp CAGCTGGATGCTGGTGCTTTTACCACACCCACTGCTCCCAACGAATaGCAGCGTCTGCCCAGGATCCACAGATACCGACAGTCCATTCAG +
Preference number: 5 (lower is better)
Translates to: QLDAGAFTTPTAPNE*QRLPRIHRYRQSIQ
Trigger: CTGAATGGACTGTCGGTATCTGTGGATCCTGGGCAGACGCTGGCATTCGTTGGGAGCAGTGGGTGTGGTAAAAGCACCAGCATCCAGCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CAA 90 bp ACCCTCTGCCCTAAGGAGGACTCCATGCTCTCTGTCACCAAGTCCTTGATGGAGCAGCCGTTGCGCTCATaGCAATGGAAGAGACCACCC +
Preference number: 5 (lower is better)
Translates to: TLCPKEDSMLSVTKSLMEQPLRS*QWKRPP
Trigger: GGGTGGTCTCTTCCATTGCAATGAGCGCAACGGCTG...CTCCATCAAGGACTTGGTGACAGAGAGCATGGAGTCCTCCTTAGGGCAGAGGGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CAA 90 bp ACCCTCTGCCCTAAGGAGGACTCCATGCTCTCTGTCACCAAGTCCTTGATGGAGTTGGCCTCACTCTCATaGTCCAGTGCTGAGGTAGCC +
Preference number: 5 (lower is better)
Translates to: TLCPKEDSMLSVTKSLMELASLS*SSAEVA
Trigger: GGCTACCTCAGCACTGGACAATGAGAGTGAGGCCAA...CTCCATCAAGGACTTGGTGACAGAGAGCATGGAGTCCTCCTTAGGGCAGAGGGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS GCA 90 bp CAACTCAAGCTCCGTGAACTTGGCCACACTCAGACCTATGACGGCTaGCCCAATCCCAATGAGAGGACTGACAGCGAGAATCACCAAGGT +
Preference number: 5 (lower is better)
Translates to: QLKLRELGHTQTYDG*PNPNERTDSENHQG
Trigger: ACCTTGGTGATTCTCGCTGTCAGTCCTCTCATTGGGATTGGGGCAGCCGTCATAGGTCTGAGTGTGGCCAAGTTCACGGAGCTTGAGTTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CAA 90 bp GACTCCATGCTCTCTGTCACCAAGTCCTTGATGGAGACAGGGACCAGCTCCTACCCACCAACCCACAGCTaGTTCCGTTTGTCATGTTCT +
Preference number: 5 (lower is better)
Translates to: DSMLSVTKSLMETGTSSYPPTHS*FRLSCS
Trigger: AGAACATGACAAACGGAACAAGCTGTGGGTTGGTGG...GTAGGAGCTGGTCCCTGTCTCCATCAAGGACTTGGTGACAGAGAGCATGGAGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CAA 90 bp ACAACCCTCTGCCCTAAGGAGGACTCCATGCTCTCTGTCACCAAGTCCTTGATGAGAGCCAGTAGCCCCTaGAACTTGGGAAGCATCTGT +
Preference number: 5 (lower is better)
Translates to: TTLCPKEDSMLSVTKSLMRASSP*NLGSIC
Trigger: ACAGATGCTTCCCAAGTTCAAGGGGCTACTGGCTCT...CATCAAGGACTTGGTGACAGAGAGCATGGAGTCCTCCTTAGGGCAGAGGGTTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CAA 90 bp AGAGCAGACTCTGTACAAGGAGCTTTCCCAAATGCAAAAGACAACCCTCTGCCCCAGCCGTTGCGCTCATaGCAATGGAAGAGACCACCC +
Preference number: 5 (lower is better)
Translates to: RADSVQGAFPNAKDNPLPQPLRS*QWKRPP
Trigger: GGGTGGTCTCTTCCATTGCAATGAGCGCAACGGCTG...GGGCAGAGGGTTGTCTTTTGCATTTGGGAAAGCTCCTTGTACAGAGTCTGCTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CAA 90 bp TGTAGAGCTATGACAACCCGCAGCCCTCCTGTGCTTGGCACATCATTATCTGTACAGCCGTTGCGCTCATaGCAATGGAAGAGACCACCC +
Preference number: 5 (lower is better)
Translates to: CRAMTTRSPPVLGTSLSVQPLRS*QWKRPP
Trigger: GGGTGGTCTCTTCCATTGCAATGAGCGCAACGGCTG...TACAGATAATGATGTGCCAAGCACAGGAGGGCTGCGGGTTGTCATAGCTCTACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CAA 90 bp ACAACCCTCTGCCCTAAGGAGGACTCCATGCTCTCTGTCACCAAGTCCTTGATGAGCAATAGCAATGCGTaGTTTCTCCCCGCGAGAGAG +
Preference number: 5 (lower is better)
Translates to: TTLCPKEDSMLSVTKSLMSNSNA*FLPARE
Trigger: CTCTCTCGCGGGGAGAAACAACGCATTGCTATTGCT...CATCAAGGACTTGGTGACAGAGAGCATGGAGTCCTCCTTAGGGCAGAGGGTTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS GCA 90 bp CTGGTGCTTTTACCACACCCACTGCTCCCAACGAATGCCAGCGTCTaGCCAGGATCCACAGATACCGACAGTCCATTCAGAACTTGTATA +
Preference number: 5 (lower is better)
Translates to: LVLLPHPLLPTNASV*PGSTDTDSPFRTCI
Trigger: TATACAAGTTCTGAATGGACTGTCGGTATCTGTGGATCCTGGGCAGACGCTGGCATTCGTTGGGAGCAGTGGGTGTGGTAAAAGCACCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CAA 90 bp TCCAGAATGGAAACGTGTTCCTCTCCCTACTCACGGGTGTCAGAGGTAAAGACAGACCATCATCCCAACTaGAGAGCCAGTAGCCCCTTG +
Preference number: 5 (lower is better)
Translates to: SRMETCSSPYSRVSEVKTDHHPN*RASSPL
Trigger: CAAGGGGCTACTGGCTCTCAAGTTGGGATGATGGTC...TGTCTTTACCTCTGACACCCGTGAGTAGGGAGAGGAACACGTTTCCATTCTGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS CCA 90 bp TCTACCAAGGCGGATGTTTTCTGCGATAGTGGTGGAGAACAGAACTaGCTCCTGTTCCACGATCCCAATTTGATCTCTCAGCCACCGGAT +
Preference number: 5 (lower is better)
Translates to: STKADVFCDSGGEQN*LLFHDPNLISQPPD
Trigger: ATCCGGTGGCTGAGAGATCAAATTGGGATCGTGGAACAGGAGCCAGTTCTGTTCTCCACCACTATCGCAGAAAACATCCGCCTTGGTAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CAA 90 bp GACTCCATGCTCTCTGTCACCAAGTCCTTGATGGAGACAGGGACCAGCTCCTACTCAGAGAATCTTGAATaGAGCTCTCCCACAGAAGTG +
Preference number: 5 (lower is better)
Translates to: DSMLSVTKSLMETGTSSYSENLE*SSPTEV
Trigger: CACTTCTGTGGGAGAGCTCAATTCAAGATTCTCTGA...GTAGGAGCTGGTCCCTGTCTCCATCAAGGACTTGGTGACAGAGAGCATGGAGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CAA 90 bp ACCCTCTGCCCTAAGGAGGACTCCATGCTCTCTGTCACCAAGTCCTTGATGGAGCGGGTTGCCTGTCTATaGTTTGGAAAATACTGGAAG +
Preference number: 5 (lower is better)
Translates to: TLCPKEDSMLSVTKSLMERVACL*FGKYWK
Trigger: CTTCCAGTATTTTCCAAACAATAGACAGGCAACCCG...CTCCATCAAGGACTTGGTGACAGAGAGCATGGAGTCCTCCTTAGGGCAGAGGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CAA 90 bp CAGAATGGAAACGTGTTCCTCTCCCTACTCACGGGTGTCAGAGGTAAAGACATTTTGGCCTCACTCTCATaGTCCAGTGCTGAGGTAGCC +
Preference number: 5 (lower is better)
Translates to: QNGNVFLSLLTGVRGKDILASLS*SSAEVA
Trigger: GGCTACCTCAGCACTGGACAATGAGAGTGAGGCCAA...AATGTCTTTACCTCTGACACCCGTGAGTAGGGAGAGGAACACGTTTCCATTCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CAA 90 bp AGACTCTGTACAAGGAGCTTTCCCAAATGCAAAAGACAACCCTCTGCCCTAAGGTTGGCCTCACTCTCATaGTCCAGTGCTGAGGTAGCC +
Preference number: 5 (lower is better)
Translates to: RLCTRSFPKCKRQPSALRLASLS*SSAEVA
Trigger: GGCTACCTCAGCACTGGACAATGAGAGTGAGGCCAA...CCTTAGGGCAGAGGGTTGTCTTTTGCATTTGGGAAAGCTCCTTGTACAGAGTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CAA 90 bp ACATGGTGGCAGGGAATGAAAAGTAGAAGCCCTGGTAAAGAGTCCCTGCTCCACAGTAGCCCCTTGAACTaGGGAAGCATCTGTAGCAAG +
Preference number: 5 (lower is better)
Translates to: TWWQGMKSRSPGKESLLHSSPLN*GSICSK
Trigger: CTTGCTACAGATGCTTCCCAAGTTCAAGGGGCTACT...GTGGAGCAGGGACTCTTTACCAGGGCTTCTACTTTTCATTCCCTGCCACCATGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CAA 90 bp TGTAGAGCTATGACAACCCGCAGCCCTCCTGTGCTTGGCACATCATTATCTGTAAGAGCCAGTAGCCCCTaGAACTTGGGAAGCATCTGT +
Preference number: 5 (lower is better)
Translates to: CRAMTTRSPPVLGTSLSVRASSP*NLGSIC
Trigger: ACAGATGCTTCCCAAGTTCAAGGGGCTACTGGCTCT...TACAGATAATGATGTGCCAAGCACAGGAGGGCTGCGGGTTGTCATAGCTCTACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CAA 90 bp ACAGAGCAGACTCTGTACAAGGAGCTTTCCCAAATGCAAAAGACAACCCTCTGCGACCATCATCCCAACTaGAGAGCCAGTAGCCCCTTG +
Preference number: 5 (lower is better)
Translates to: TEQTLYKELSQMQKTTLCDHHPN*RASSPL
Trigger: CAAGGGGCTACTGGCTCTCAAGTTGGGATGATGGTC...GCAGAGGGTTGTCTTTTGCATTTGGGAAAGCTCCTTGTACAGAGTCTGCTCTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CAA 90 bp AGAGCAGACTCTGTACAAGGAGCTTTCCCAAATGCAAAAGACAACCCTCTGCCCAGCAATAGCAATGCGTaGTTTCTCCCCGCGAGAGAG +
Preference number: 5 (lower is better)
Translates to: RADSVQGAFPNAKDNPLPSNSNA*FLPARE
Trigger: CTCTCTCGCGGGGAGAAACAACGCATTGCTATTGCT...GGGCAGAGGGTTGTCTTTTGCATTTGGGAAAGCTCCTTGTACAGAGTCTGCTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS CCA 90 bp GGCAGGGCCATAATGAAGTTGTATGCATTAGCATCCTTGGCAGCTTaGACTATGTCTTCCATTGTCGCCTCTTCTCTACCAAGGCGGATG +
Preference number: 5 (lower is better)
Translates to: GRAIMKLYALASLAA*TMSSIVASSLPRRM
Trigger: CATCCGCCTTGGTAGAGAAGAGGCGACAATGGAAGACATAGTCCAAGCTGCCAAGGATGCTAATGCATACAACTTCATTATGGCCCTGCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CAA 90 bp ACAACCCTCTGCCCTAAGGAGGACTCCATGCTCTCTGTCACCAAGTCCTTGATGTCAGAGAATCTTGAATaGAGCTCTCCCACAGAAGTG +
Preference number: 5 (lower is better)
Translates to: TTLCPKEDSMLSVTKSLMSENLE*SSPTEV
Trigger: CACTTCTGTGGGAGAGCTCAATTCAAGATTCTCTGA...CATCAAGGACTTGGTGACAGAGAGCATGGAGTCCTCCTTAGGGCAGAGGGTTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CAA 90 bp ACATGGTGGCAGGGAATGAAAAGTAGAAGCCCTGGTAAAGAGTCCCTGCTCCACGGACTATGTCTTCCATaGTCGCCTCTTCTCTACCAA +
Preference number: 5 (lower is better)
Translates to: TWWQGMKSRSPGKESLLHGLCLP*SPLLYQ
Trigger: TTGGTAGAGAAGAGGCGACAATGGAAGACATAGTCC...GTGGAGCAGGGACTCTTTACCAGGGCTTCTACTTTTCATTCCCTGCCACCATGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CAA 90 bp ACCCTCTGCCCTAAGGAGGACTCCATGCTCTCTGTCACCAAGTCCTTGATGGAGATTATCTTCTTGGCTTaGCAGGGTCACAAGCATGAA +
Preference number: 5 (lower is better)
Translates to: TLCPKEDSMLSVTKSLMEIIFLA*QGHKHE
Trigger: TTCATGCTTGTGACCCTGCAAAGCCAAGAAGATAAT...CTCCATCAAGGACTTGGTGACAGAGAGCATGGAGTCCTCCTTAGGGCAGAGGGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CAA 90 bp GACTCCATGCTCTCTGTCACCAAGTCCTTGATGGAGACAGGGACCAGCTCCTACTTTCTAATGGCAGTCTaGTATGACTTCTCCAGCTCA +
Preference number: 5 (lower is better)
Translates to: DSMLSVTKSLMETGTSSYFLMAV*YDFSSS
Trigger: TGAGCTGGAGAAGTCATACAAGACTGCCATTAGAAA...GTAGGAGCTGGTCCCTGTCTCCATCAAGGACTTGGTGACAGAGAGCATGGAGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CAA 90 bp ACCCTCTGCCCTAAGGAGGACTCCATGCTCTCTGTCACCAAGTCCTTGATGGAGAGACAATCCCAATGTTaGAACGGAGGAACTGAACAT +
Preference number: 5 (lower is better)
Translates to: TLCPKEDSMLSVTKSLMERQSQC*NGGTEH
Trigger: ATGTTCAGTTCCTCCGTTCAAACATTGGGATTGTCT...CTCCATCAAGGACTTGGTGACAGAGAGCATGGAGTCCTCCTTAGGGCAGAGGGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CAA 90 bp ACCCTCTGCCCTAAGGAGGACTCCATGCTCTCTGTCACCAAGTCCTTGATGGAGGTGTTGTCCCCATACTaGATGTTGTCCATTATGCTA +
Preference number: 5 (lower is better)
Translates to: TLCPKEDSMLSVTKSLMEVLSPY*MLSIML
Trigger: TAGCATAATGGACAACATCAAGTATGGGGACAACAC...CTCCATCAAGGACTTGGTGACAGAGAGCATGGAGTCCTCCTTAGGGCAGAGGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS TCA 90 bp GCTTCGTTGGTGATCTGGCCAGCCTTCTCCAGAATTTCCTTGTCTTaGGAAGCGAATCCTGTCAGCATTTTTGTCTGTACAGCTCCCGAT +
Preference number: 5 (lower is better)
Translates to: ASLVIWPAFSRISLS*EANPVSIFVCTAPD
Trigger: ATCGGGAGCTGTACAGACAAAAATGCTGACAGGATTCGCTTCTCAAGACAAGGAAATTCTGGAGAAGGCTGGCCAGATCACCAACGAAGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS TCA 90 bp TTAGTTTCATATTTCTCTGGGAGTGACATGACGAAGTCATGCAGCTaGGCCTGCTTTGCGGCAGCTATAGCTCTCTCCACGGAGATCTCT +
Preference number: 5 (lower is better)
Translates to: LVSYFSGSDMTKSCS*ACFAAAIALSTEIS
Trigger: AGAGATCTCCGTGGAGAGAGCTATAGCTGCCGCAAAGCAGGCTCAGCTGCATGACTTCGTCATGTCACTCCCAGAGAAATATGAAACTAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CAA 90 bp AGACTCTGTACAAGGAGCTTTCCCAAATGCAAAAGACAACCCTCTGCCCTAAGGCCACCAACCCACAGCTaGTTCCGTTTGTCATGTTCT +
Preference number: 5 (lower is better)
Translates to: RLCTRSFPKCKRQPSALRPPTHS*FRLSCS
Trigger: AGAACATGACAAACGGAACAAGCTGTGGGTTGGTGG...CCTTAGGGCAGAGGGTTGTCTTTTGCATTTGGGAAAGCTCCTTGTACAGAGTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CAA 90 bp ACATGGTGGCAGGGAATGAAAAGTAGAAGCCCTGGTAAAGAGTCCCTGCTCCACTCAGAGAATCTTGAATaGAGCTCTCCCACAGAAGTG +
Preference number: 5 (lower is better)
Translates to: TWWQGMKSRSPGKESLLHSENLE*SSPTEV
Trigger: CACTTCTGTGGGAGAGCTCAATTCAAGATTCTCTGA...GTGGAGCAGGGACTCTTTACCAGGGCTTCTACTTTTCATTCCCTGCCACCATGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CAA 90 bp AGAGCAGACTCTGTACAAGGAGCTTTCCCAAATGCAAAAGACAACCCTCTGCCCGGACTATGTCTTCCATaGTCGCCTCTTCTCTACCAA +
Preference number: 5 (lower is better)
Translates to: RADSVQGAFPNAKDNPLPGLCLP*SPLLYQ
Trigger: TTGGTAGAGAAGAGGCGACAATGGAAGACATAGTCC...GGGCAGAGGGTTGTCTTTTGCATTTGGGAAAGCTCCTTGTACAGAGTCTGCTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CAA 90 bp ACATGGTGGCAGGGAATGAAAAGTAGAAGCCCTGGTAAAGAGTCCCTGCTCCACTATGCATTAGCATCCTaGGCAGCTTGGACTATGTCT +
Preference number: 5 (lower is better)
Translates to: TWWQGMKSRSPGKESLLHYALAS*AAWTMS
Trigger: AGACATAGTCCAAGCTGCCAAGGATGCTAATGCATA...GTGGAGCAGGGACTCTTTACCAGGGCTTCTACTTTTCATTCCCTGCCACCATGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CAA 90 bp ACATGGTGGCAGGGAATGAAAAGTAGAAGCCCTGGTAAAGAGTCCCTGCTCCACGTGAGTATTATCTTCTaGGCTTTGCAGGGTCACAAG +
Preference number: 5 (lower is better)
Translates to: TWWQGMKSRSPGKESLLHVSIIF*ALQGHK
Trigger: CTTGTGACCCTGCAAAGCCAAGAAGATAATACTCAC...GTGGAGCAGGGACTCTTTACCAGGGCTTCTACTTTTCATTCCCTGCCACCATGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CAA 90 bp ACAGAGCAGACTCTGTACAAGGAGCTTTCCCAAATGCAAAAGACAACCCTCTGCAGTAGCCCCTTGAACTaGGGAAGCATCTGTAGCAAG +
Preference number: 5 (lower is better)
Translates to: TEQTLYKELSQMQKTTLCSSPLN*GSICSK
Trigger: CTTGCTACAGATGCTTCCCAAGTTCAAGGGGCTACT...GCAGAGGGTTGTCTTTTGCATTTGGGAAAGCTCCTTGTACAGAGTCTGCTCTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CAA 90 bp AGACTCTGTACAAGGAGCTTTCCCAAATGCAAAAGACAACCCTCTGCCCTAAGGAGTAGCCCCTTGAACTaGGGAAGCATCTGTAGCAAG +
Preference number: 5 (lower is better)
Translates to: RLCTRSFPKCKRQPSALRSSPLN*GSICSK
Trigger: CTTGCTACAGATGCTTCCCAAGTTCAAGGGGCTACT...CCTTAGGGCAGAGGGTTGTCTTTTGCATTTGGGAAAGCTCCTTGTACAGAGTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS TCA 90 bp TTCGTAAGAGGACTTGTGATCACCTATAGCCAGTGGAGGTTCATGTaGCAGATGAGACAGCTGAGACTTAGATCGTTGACGGATGGAAGC +
Preference number: 5 (lower is better)
Translates to: FVRGLVITYSQWRFM*QMRQLRLRSLTDGS
Trigger: GCTTCCATCCGTCAACGATCTAAGTCTCAGCTGTCTCATCTGTCACATGAACCTCCACTGGCTATAGGTGATCACAAGTCCTCTTACGAA
48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS GCA 90 bp GCTCGGTGTGTAAGAGAATGTTCTTCCAACAGCCGTTGCGCTCATTaGAATGGAAGAGACCACCCTGAAAACATAGCTGAAGTTCAGATC +
Preference number: 5 (lower is better)
Translates to: ARCVRECSSNSRCAH*NGRDHPENIAEVQI
Trigger: GATCTGAACTTCAGCTATGTTTTCAGGGTGGTCTCTTCCATTGCAATGAGCGCAACGGCTGTTGGAAGAACATTCTCTTACACACCGAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS CCA 90 bp GTCAGTATACCAAACACAATAATCATGCCTGGCTGGGCCATTCCATaGAGCAATGCGCACACACTTCCCATAAACATCAGCCAGTTGTCT +
Preference number: 5 (lower is better)
Translates to: VSIPNTIIMPGWAIP*SNAHTLPINISQLS
Trigger: AGACAACTGGCTGATGTTTATGGGAAGTGTGTGCGCATTGCTCCATGGAATGGCCCAGCCAGGCATGATTATTGTGTTTGGTATACTGAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CAA 90 bp GACTCCATGCTCTCTGTCACCAAGTCCTTGATGGAGACAGGGACCAGCTCCTACTCAGCCAGTTGTCTTTaGATGAAGAAAATCGAAACA +
Preference number: 5 (lower is better)
Translates to: DSMLSVTKSLMETGTSSYSASCL*MKKIET
Trigger: TGTTTCGATTTTCTTCATCAAAAGACAACTGGCTGA...GTAGGAGCTGGTCCCTGTCTCCATCAAGGACTTGGTGACAGAGAGCATGGAGTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CAA 90 bp ACAGAGCAGACTCTGTACAAGGAGCTTTCCCAAATGCAAAAGACAACCCTCTGCGGACTATGTCTTCCATaGTCGCCTCTTCTCTACCAA +
Preference number: 5 (lower is better)
Translates to: TEQTLYKELSQMQKTTLCGLCLP*SPLLYQ
Trigger: TTGGTAGAGAAGAGGCGACAATGGAAGACATAGTCC...GCAGAGGGTTGTCTTTTGCATTTGGGAAAGCTCCTTGTACAGAGTCTGCTCTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CAA 90 bp ACAGAGCAGACTCTGTACAAGGAGCTTTCCCAAATGCAAAAGACAACCCTCTGCAGCATCCTTGGCAGCTaGGACTATGTCTTCCATTGT +
Preference number: 5 (lower is better)
Translates to: TEQTLYKELSQMQKTTLCSILGS*DYVFHC
Trigger: ACAATGGAAGACATAGTCCAAGCTGCCAAGGATGCT...GCAGAGGGTTGTCTTTTGCATTTGGGAAAGCTCCTTGTACAGAGTCTGCTCTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CAA 90 bp CAGAATGGAAACGTGTTCCTCTCCCTACTCACGGGTGTCAGAGGTAAAGACATTAGCATCCTTGGCAGCTaGGACTATGTCTTCCATTGT +
Preference number: 5 (lower is better)
Translates to: QNGNVFLSLLTGVRGKDISILGS*DYVFHC
Trigger: ACAATGGAAGACATAGTCCAAGCTGCCAAGGATGCT...AATGTCTTTACCTCTGACACCCGTGAGTAGGGAGAGGAACACGTTTCCATTCTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CAA 90 bp TCCAGAATGGAAACGTGTTCCTCTCCCTACTCACGGGTGTCAGAGGTAAAGACATATGCATTAGCATCCTaGGCAGCTTGGACTATGTCT +
Preference number: 5 (lower is better)
Translates to: SRMETCSSPYSRVSEVKTYALAS*AAWTMS
Trigger: AGACATAGTCCAAGCTGCCAAGGATGCTAATGCATA...TGTCTTTACCTCTGACACCCGTGAGTAGGGAGAGGAACACGTTTCCATTCTGGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CAA 90 bp TGTAGAGCTATGACAACCCGCAGCCCTCCTGTGCTTGGCACATCATTATCTGTAGTGAGTATTATCTTCTaGGCTTTGCAGGGTCACAAG +
Preference number: 5 (lower is better)
Translates to: CRAMTTRSPPVLGTSLSVVSIIF*ALQGHK
Trigger: CTTGTGACCCTGCAAAGCCAAGAAGATAATACTCAC...TACAGATAATGATGTGCCAAGCACAGGAGGGCTGCGGGTTGTCATAGCTCTACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CAA 90 bp TCCAGAATGGAAACGTGTTCCTCTCCCTACTCACGGGTGTCAGAGGTAAAGACAGTGAGTATTATCTTCTaGGCTTTGCAGGGTCACAAG +
Preference number: 5 (lower is better)
Translates to: SRMETCSSPYSRVSEVKTVSIIF*ALQGHK
Trigger: CTTGTGACCCTGCAAAGCCAAGAAGATAATACTCAC...TGTCTTTACCTCTGACACCCGTGAGTAGGGAGAGGAACACGTTTCCATTCTGGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CAA 90 bp AGAGCAGACTCTGTACAAGGAGCTTTCCCAAATGCAAAAGACAACCCTCTGCCCATCCTGTCAGCATTTTaGTCTGTACAGCTCCCGATA +
Preference number: 5 (lower is better)
Translates to: RADSVQGAFPNAKDNPLPILSAF*SVQLPI
Trigger: TATCGGGAGCTGTACAGACAAAAATGCTGACAGGAT...GGGCAGAGGGTTGTCTTTTGCATTTGGGAAAGCTCCTTGTACAGAGTCTGCTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CAA 90 bp TGTAGAGCTATGACAACCCGCAGCCCTCCTGTGCTTGGCACATCATTATCTGTAATCCTGTCAGCATTTTaGTCTGTACAGCTCCCGATA +
Preference number: 5 (lower is better)
Translates to: CRAMTTRSPPVLGTSLSVILSAF*SVQLPI
Trigger: TATCGGGAGCTGTACAGACAAAAATGCTGACAGGAT...TACAGATAATGATGTGCCAAGCACAGGAGGGCTGCGGGTTGTCATAGCTCTACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CAA 90 bp ACATGGTGGCAGGGAATGAAAAGTAGAAGCCCTGGTAAAGAGTCCCTGCTCCACGTGTTGTCCCCATACTaGATGTTGTCCATTATGCTA +
Preference number: 5 (lower is better)
Translates to: TWWQGMKSRSPGKESLLHVLSPY*MLSIML
Trigger: TAGCATAATGGACAACATCAAGTATGGGGACAACAC...GTGGAGCAGGGACTCTTTACCAGGGCTTCTACTTTTCATTCCCTGCCACCATGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CAA 90 bp TGTAGAGCTATGACAACCCGCAGCCCTCCTGTGCTTGGCACATCATTATCTGTAGAGATCTCTTTGGTGTaGTCCCCATACTTGATGTTG +
Preference number: 5 (lower is better)
Translates to: CRAMTTRSPPVLGTSLSVEISLV*SPYLML
Trigger: CAACATCAAGTATGGGGACAACACCAAAGAGATCTC...TACAGATAATGATGTGCCAAGCACAGGAGGGCTGCGGGTTGTCATAGCTCTACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS TCA 90 bp CACCTCCTTATTCTCACCACCAAAAGCAGCCACTGTTCGAATAGATaGGAGGACTTCATCGGCAATAGACCCAGCTTTAGCATAAGCCTT +
Preference number: 5 (lower is better)
Translates to: HLLILTTKSSHCSNR*EDFIGNRPSFSISL
Trigger: AAGGCTTATGCTAAAGCTGGGTCTATTGCCGATGAAGTCCTCTCATCTATTCGAACAGTGGCTGCTTTTGGTGGTGAGAATAAGGAGGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS GCA 90 bp TTTGGCATAGCTCGGTGTGTAAGAGAATGTTCTTCCAACAGCCGTTaGGCTCATTGCAATGGAAGAGACCACCCTGAAAACATAGCTGAA +
Preference number: 5 (lower is better)
Translates to: FGIARCVRECSSNSR*AHCNGRDHPENIAE
Trigger: TTCAGCTATGTTTTCAGGGTGGTCTCTTCCATTGCAATGAGCGCAACGGCTGTTGGAAGAACATTCTCTTACACACCGAGCTATGCCAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS CCA 90 bp ACTGTTGATAGGCGATGGGCAACTGAGATGATTGTGTGTCCATGTTaGATCTTATTCAGTGCTCCCTGTACTTTGGCCTCACTCTCATTG +
Preference number: 5 (lower is better)
Translates to: TVDRRWATEMIVCPC*ILFSAPCTLASLSL
Trigger: CAATGAGAGTGAGGCCAAAGTACAGGGAGCACTGAATAAGATCCAACATGGACACACAATCATCTCAGTTGCCCATCGCCTATCAACAGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CAA 90 bp ACAACCCTCTGCCCTAAGGAGGACTCCATGCTCTCTGTCACCAAGTCCTTGATGTCAGCCAGTTGTCTTTaGATGAAGAAAATCGAAACA +
Preference number: 5 (lower is better)
Translates to: TTLCPKEDSMLSVTKSLMSASCL*MKKIET
Trigger: TGTTTCGATTTTCTTCATCAAAAGACAACTGGCTGA...CATCAAGGACTTGGTGACAGAGAGCATGGAGTCCTCCTTAGGGCAGAGGGTTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CAA 90 bp TGTAGAGCTATGACAACCCGCAGCCCTCCTGTGCTTGGCACATCATTATCTGTATGGTTGAAGGAGCTGTaGATCCATACAATGGTGTTA +
Preference number: 5 (lower is better)
Translates to: CRAMTTRSPPVLGTSLSVWLKEL*IHTMVL
Trigger: TAACACCATTGTATGGATCAACAGCTCCTTCAACCA...TACAGATAATGATGTGCCAAGCACAGGAGGGCTGCGGGTTGTCATAGCTCTACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CAA 90 bp AGCTGGCTCAAACAGTTGAGTCCAGATTACAGAGCAGACTCTGTACAAGGAGCTCGGGTTGCCTGTCTATaGTTTGGAAAATACTGGAAG +
Preference number: 5 (lower is better)
Translates to: SWLKQLSPDYRADSVQGARVACL*FGKYWK
Trigger: CTTCCAGTATTTTCCAAACAATAGACAGGCAACCCG...AGCTCCTTGTACAGAGTCTGCTCTGTAATCTGGACTCAACTGTTTGAGCCAGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CAA 90 bp AAGGGACATCAGGTGACATGGTGGCAGGGAATGAAAAGTAGAAGCCCTGGTAAAATCCTGTCAGCATTTTaGTCTGTACAGCTCCCGATA +
Preference number: 5 (lower is better)
Translates to: KGHQVTWWQGMKSRSPGKILSAF*SVQLPI
Trigger: TATCGGGAGCTGTACAGACAAAAATGCTGACAGGAT...TTTACCAGGGCTTCTACTTTTCATTCCCTGCCACCATGTCACCTGATGTCCCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CAA 90 bp AGAGCAGACTCTGTACAAGGAGCTTTCCCAAATGCAAAAGACAACCCTCTGCCCAGACAATCCCAATGTTaGAACGGAGGAACTGAACAT +
Preference number: 5 (lower is better)
Translates to: RADSVQGAFPNAKDNPLPRQSQC*NGGTEH
Trigger: ATGTTCAGTTCCTCCGTTCAAACATTGGGATTGTCT...GGGCAGAGGGTTGTCTTTTGCATTTGGGAAAGCTCCTTGTACAGAGTCTGCTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS TCA 90 bp CATGACGGGTTGCCTGTCTATTGTTTGGAAAATACTGGAAGCTGCTaGACACCCAGTGGAGAAGATTTCCAAACAAGAAGATGCATTGCC +
Preference number: 5 (lower is better)
Translates to: HDGLPVYCLENTGSC*TPSGEDFQTRRCIA
Trigger: GGCAATGCATCTTCTTGTTTGGAAATCTTCTCCACTGGGTGTTCAGCAGCTTCCAGTATTTTCCAAACAATAGACAGGCAACCCGTCATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS GCA 90 bp CTTTCTAACAGTTCTTCATGGGTGCCTCTTTCCACAGCTGTTCCATaGTCAAAGCCAATGATCACATCTGCAGATCTGACTGTTGATAGG +
Preference number: 5 (lower is better)
Translates to: LSNSSSWVPLSTAVP*SKPMITSADLTVDR
Trigger: CCTATCAACAGTCAGATCTGCAGATGTGATCATTGGCTTTGAGCATGGAACAGCTGTGGAAAGAGGCACCCATGAAGAACTGTTAGAAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CAA 90 bp AGCTGGCTCAAACAGTTGAGTCCAGATTACAGAGCAGACTCTGTACAAGGAGCTTTGCCTGTCTATTGTTaGGAAAATACTGGAAGCTGC +
Preference number: 5 (lower is better)
Translates to: SWLKQLSPDYRADSVQGALPVYC*ENTGSC
Trigger: GCAGCTTCCAGTATTTTCCAAACAATAGACAGGCAA...AGCTCCTTGTACAGAGTCTGCTCTGTAATCTGGACTCAACTGTTTGAGCCAGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CAA 90 bp TTCCTCTCCCTACTCACGGGTGTCAGAGGTAAAGACATTTGCTTCCCTATAGAACGGGTTGCCTGTCTATaGTTTGGAAAATACTGGAAG +
Preference number: 5 (lower is better)
Translates to: FLSLLTGVRGKDICFPIERVACL*FGKYWK
Trigger: CTTCCAGTATTTTCCAAACAATAGACAGGCAACCCG...TTCTATAGGGAAGCAAATGTCTTTACCTCTGACACCCGTGAGTAGGGAGAGGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CAA 90 bp TCCAGAATGGAAACGTGTTCCTCTCCCTACTCACGGGTGTCAGAGGTAAAGACAGGCCATTCTGAGATGTaGTATTTTAGAATCCTCCTA +
Preference number: 5 (lower is better)
Translates to: SRMETCSSPYSRVSEVKTGHSEM*YFRILL
Trigger: TAGGAGGATTCTAAAATACAACATCTCAGAATGGCC...TGTCTTTACCTCTGACACCCGTGAGTAGGGAGAGGAACACGTTTCCATTCTGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CAA 90 bp AAGGGACATCAGGTGACATGGTGGCAGGGAATGAAAAGTAGAAGCCCTGGTAAATTTCTAATGGCAGTCTaGTATGACTTCTCCAGCTCA +
Preference number: 5 (lower is better)
Translates to: KGHQVTWWQGMKSRSPGKFLMAV*YDFSSS
Trigger: TGAGCTGGAGAAGTCATACAAGACTGCCATTAGAAA...TTTACCAGGGCTTCTACTTTTCATTCCCTGCCACCATGTCACCTGATGTCCCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CAA 90 bp AGCTGGCTCAAACAGTTGAGTCCAGATTACAGAGCAGACTCTGTACAAGGAGCTAGACAATCCCAATGTTaGAACGGAGGAACTGAACAT +
Preference number: 5 (lower is better)
Translates to: SWLKQLSPDYRADSVQGARQSQC*NGGTEH
Trigger: ATGTTCAGTTCCTCCGTTCAAACATTGGGATTGTCT...AGCTCCTTGTACAGAGTCTGCTCTGTAATCTGGACTCAACTGTTTGAGCCAGCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CAA 90 bp AAGGGACATCAGGTGACATGGTGGCAGGGAATGAAAAGTAGAAGCCCTGGTAAATCCCCATACTTGATGTaGTCCATTATGCTACAGTCA +
Preference number: 5 (lower is better)
Translates to: KGHQVTWWQGMKSRSPGKSPYLM*SIMLQS
Trigger: TGACTGTAGCATAATGGACAACATCAAGTATGGGGA...TTTACCAGGGCTTCTACTTTTCATTCCCTGCCACCATGTCACCTGATGTCCCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CAA 90 bp TTCCTCTCCCTACTCACGGGTGTCAGAGGTAAAGACATTTGCTTCCCTATAGAAGAGATCTCTTTGGTGTaGTCCCCATACTTGATGTTG +
Preference number: 5 (lower is better)
Translates to: FLSLLTGVRGKDICFPIEEISLV*SPYLML
Trigger: CAACATCAAGTATGGGGACAACACCAAAGAGATCTC...TTCTATAGGGAAGCAAATGTCTTTACCTCTGACACCCGTGAGTAGGGAGAGGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CAA 90 bp TTCCTCTCCCTACTCACGGGTGTCAGAGGTAAAGACATTTGCTTCCCTATAGAATGGTTGAAGGAGCTGTaGATCCATACAATGGTGTTA +
Preference number: 5 (lower is better)
Translates to: FLSLLTGVRGKDICFPIEWLKEL*IHTMVL
Trigger: TAACACCATTGTATGGATCAACAGCTCCTTCAACCA...TTCTATAGGGAAGCAAATGTCTTTACCTCTGACACCCGTGAGTAGGGAGAGGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CAA 90 bp TTCCTCTCCCTACTCACGGGTGTCAGAGGTAAAGACATTTGCTTCCCTATAGAATTGCCTGTCTATTGTTaGGAAAATACTGGAAGCTGC +
Preference number: 5 (lower is better)
Translates to: FLSLLTGVRGKDICFPIELPVYC*ENTGSC
Trigger: GCAGCTTCCAGTATTTTCCAAACAATAGACAGGCAA...TTCTATAGGGAAGCAAATGTCTTTACCTCTGACACCCGTGAGTAGGGAGAGGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CAA 90 bp TTCCTCTCCCTACTCACGGGTGTCAGAGGTAAAGACATTTGCTTCCCTATAGAAATTATCTTCTTGGCTTaGCAGGGTCACAAGCATGAA +
Preference number: 5 (lower is better)
Translates to: FLSLLTGVRGKDICFPIEIIFLA*QGHKHE
Trigger: TTCATGCTTGTGACCCTGCAAAGCCAAGAAGATAAT...TTCTATAGGGAAGCAAATGTCTTTACCTCTGACACCCGTGAGTAGGGAGAGGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CAA 90 bp AGCTGGCTCAAACAGTTGAGTCCAGATTACAGAGCAGACTCTGTACAAGGAGCTGGCCATTCTGAGATGTaGTATTTTAGAATCCTCCTA +
Preference number: 5 (lower is better)
Translates to: SWLKQLSPDYRADSVQGAGHSEM*YFRILL
Trigger: TAGGAGGATTCTAAAATACAACATCTCAGAATGGCC...AGCTCCTTGTACAGAGTCTGCTCTGTAATCTGGACTCAACTGTTTGAGCCAGCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CAA 90 bp ACTGAAATTATTACTGAAAGCCACTCAAGATTAGTTTGGATGCCAGTGGATACTGACCATCATCCCAACTaGAGAGCCAGTAGCCCCTTG +
Preference number: 5 (lower is better)
Translates to: TEIITESHSRLVWMPVDTDHHPN*RASSPL
Trigger: CAAGGGGCTACTGGCTCTCAAGTTGGGATGATGGTC...AGTATCCACTGGCATCCAAACTAATCTTGAGTGGCTTTCAGTAATAATTTCAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CAA 90 bp TGTAGAGCTATGACAACCCGCAGCCCTCCTGTGCTTGGCACATCATTATCTGTAAAAATCAATCTTCCCTaGGAAGTTGTCCCATTTTTC +
Preference number: 5 (lower is better)
Translates to: CRAMTTRSPPVLGTSLSVKINLP*EVVPFF
Trigger: GAAAAATGGGACAACTTCCAAGGGAAGATTGATTTT...TACAGATAATGATGTGCCAAGCACAGGAGGGCTGCGGGTTGTCATAGCTCTACA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CAA 90 bp TTCCTCTCCCTACTCACGGGTGTCAGAGGTAAAGACATTTGCTTCCCTATAGAAGTGTTGTCCCCATACTaGATGTTGTCCATTATGCTA +
Preference number: 5 (lower is better)
Translates to: FLSLLTGVRGKDICFPIEVLSPY*MLSIML
Trigger: TAGCATAATGGACAACATCAAGTATGGGGACAACAC...TTCTATAGGGAAGCAAATGTCTTTACCTCTGACACCCGTGAGTAGGGAGAGGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS CCA 90 bp CTGTTAATGTCCACCAACCCACAGCTTGTTCCGTTTGTCATGTTCTaGTTGAAGGAGCTGTTGATCCATACAATGGTGTTATTCATACAC +
Preference number: 5 (lower is better)
Translates to: LLMSTNPQLVPFVMF*LKELLIHTMVLFIH
Trigger: GTGTATGAATAACACCATTGTATGGATCAACAGCTCCTTCAACCAGAACATGACAAACGGAACAAGCTGTGGGTTGGTGGACATTAACAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CAA 90 bp TTCCTCTCCCTACTCACGGGTGTCAGAGGTAAAGACATTTGCTTCCCTATAGAAGGCCATTCTGAGATGTaGTATTTTAGAATCCTCCTA +
Preference number: 5 (lower is better)
Translates to: FLSLLTGVRGKDICFPIEGHSEM*YFRILL
Trigger: TAGGAGGATTCTAAAATACAACATCTCAGAATGGCC...TTCTATAGGGAAGCAAATGTCTTTACCTCTGACACCCGTGAGTAGGGAGAGGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CAA 90 bp TTCCTCTCCCTACTCACGGGTGTCAGAGGTAAAGACATTTGCTTCCCTATAGAATGTCTTAACATTGCCTaGAAACCAAATTTACGCAGC +
Preference number: 5 (lower is better)
Translates to: FLSLLTGVRGKDICFPIECLNIA*KPNLRS
Trigger: GCTGCGTAAATTTGGTTTCAAGGCAATGTTAAGACA...TTCTATAGGGAAGCAAATGTCTTTACCTCTGACACCCGTGAGTAGGGAGAGGAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CAA 90 bp AGACTCTGTACAAGGAGCTTTCCCAAATGCAAAAGACAACCCTCTGCCCTAAGGAAAATCAATCTTCCCTaGGAAGTTGTCCCATTTTTC +
Preference number: 5 (lower is better)
Translates to: RLCTRSFPKCKRQPSALRKINLP*EVVPFF
Trigger: GAAAAATGGGACAACTTCCAAGGGAAGATTGATTTT...CCTTAGGGCAGAGGGTTGTCTTTTGCATTTGGGAAAGCTCCTTGTACAGAGTCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS TCA 90 bp TTTCTTTGTGAGTATTATCTTCTTGGCTTTGCAGGGTCACAAGCATaGAGTAGACACCTTTTCTTTCTAACAGTTCTTCATGGGTGCCTC +
Preference number: 5 (lower is better)
Translates to: FLCEYYLLGFAGSQA*SRHLFFLTVLHGCL
Trigger: GAGGCACCCATGAAGAACTGTTAGAAAGAAAAGGTGTCTACTTCATGCTTGTGACCCTGCAAAGCCAAGAAGATAATACTCACAAAGAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CAA 90 bp ACTGAAATTATTACTGAAAGCCACTCAAGATTAGTTTGGATGCCAGTGGATACTAGCATCCTTGGCAGCTaGGACTATGTCTTCCATTGT +
Preference number: 5 (lower is better)
Translates to: TEIITESHSRLVWMPVDTSILGS*DYVFHC
Trigger: ACAATGGAAGACATAGTCCAAGCTGCCAAGGATGCT...AGTATCCACTGGCATCCAAACTAATCTTGAGTGGCTTTCAGTAATAATTTCAGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS TCA 90 bp TGGTGCTTTTCTGAATTATTCTGGAAACCATCTGATTCGAAAGCATaGTTCTCCTCTCCAAATTTCTTCACACTGCGAAGAATCACTGAG +
Preference number: 5 (lower is better)
Translates to: WCFSELFWKPSDSKA*FSSPNFFTLRRITE
Trigger: CTCAGTGATTCTTCGCAGTGTGAAGAAATTTGGAGAGGAGAATCATGCTTTCGAATCAGATGGTTTCCAGAATAATTCAGAAAAGCACCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000180142.2
CDS-3UTR CAA 90 bp CAAACTGAAATTATTACTGAAAGCCACTCAAGATTAGTTTGGATGCCAGTGGATTATGCATTAGCATCCTaGGCAGCTTGGACTATGTCT +
Preference number: 5 (lower is better)
Translates to: QTEIITESHSRLVWMPVDYALAS*AAWTMS
Trigger: AGACATAGTCCAAGCTGCCAAGGATGCTAATGCATA...ATCCACTGGCATCCAAACTAATCTTGAGTGGCTTTCAGTAATAATTTCAGTTTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CAA 90 bp CAAACTGAAATTATTACTGAAAGCCACTCAAGATTAGTTTGGATGCCAGTGGATGAGATCTCTTTGGTGTaGTCCCCATACTTGATGTTG +
Preference number: 5 (lower is better)
Translates to: QTEIITESHSRLVWMPVDEISLV*SPYLML
Trigger: CAACATCAAGTATGGGGACAACACCAAAGAGATCTC...ATCCACTGGCATCCAAACTAATCTTGAGTGGCTTTCAGTAATAATTTCAGTTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CAA 90 bp CAAACTGAAATTATTACTGAAAGCCACTCAAGATTAGTTTGGATGCCAGTGGATTTTCTAATGGCAGTCTaGTATGACTTCTCCAGCTCA +
Preference number: 5 (lower is better)
Translates to: QTEIITESHSRLVWMPVDFLMAV*YDFSSS
Trigger: TGAGCTGGAGAAGTCATACAAGACTGCCATTAGAAA...ATCCACTGGCATCCAAACTAATCTTGAGTGGCTTTCAGTAATAATTTCAGTTTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CAA 90 bp CAAACTGAAATTATTACTGAAAGCCACTCAAGATTAGTTTGGATGCCAGTGGATTCCCCATACTTGATGTaGTCCATTATGCTACAGTCA +
Preference number: 5 (lower is better)
Translates to: QTEIITESHSRLVWMPVDSPYLM*SIMLQS
Trigger: TGACTGTAGCATAATGGACAACATCAAGTATGGGGA...ATCCACTGGCATCCAAACTAATCTTGAGTGGCTTTCAGTAATAATTTCAGTTTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS TCA 90 bp CTTGATTTCTTATCATTGTTATGGAAACCATCTGATTCGAAAGCATaGTTCTCCTCTCCAAATTTCTTCACACTGCGAAGAATCACTGAG +
Preference number: 5 (lower is better)
Translates to: LDFLSLLWKPSDSKA*FSSPNFFTLRRITE
Trigger: CTCAGTGATTCTTCGCAGTGTGAAGAAATTTGGAGAGGAGAATCATGCTTTCGAATCAGATGGTTTCCATAACAATGATAAGAAATCAAG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
CDS CCA 90 bp CGAGAAGGATATGTAAATTTACAGTCGATAAAATCAATCTTCCCTTaGAAGTTGTCCCATTTTTCACCTGCTCCACTGTACACATCAATT +
Preference number: 5 (lower is better)
Translates to: REGYVNLQSIKSIFP*KLSHFSPAPLYTSI
Trigger: AATTGATGTGTACAGTGGAGCAGGTGAAAAATGGGACAACTTCCAAGGGAAGATTGATTTTATCGACTGTAAATTTACATATCCTTCTCG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CAA 90 bp CAAACTGAAATTATTACTGAAAGCCACTCAAGATTAGTTTGGATGCCAGTGGATTGTCTTAACATTGCCTaGAAACCAAATTTACGCAGC +
Preference number: 5 (lower is better)
Translates to: QTEIITESHSRLVWMPVDCLNIA*KPNLRS
Trigger: GCTGCGTAAATTTGGTTTCAAGGCAATGTTAAGACA...ATCCACTGGCATCCAAACTAATCTTGAGTGGCTTTCAGTAATAATTTCAGTTTG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS-3UTR CAA 90 bp ACTGAAATTATTACTGAAAGCCACTCAAGATTAGTTTGGATGCCAGTGGATACTTCAGCCAGTTGTCTTTaGATGAAGAAAATCGAAACA +
Preference number: 5 (lower is better)
Translates to: TEIITESHSRLVWMPVDTSASCL*MKKIET
Trigger: TGTTTCGATTTTCTTCATCAAAAGACAACTGGCTGA...AGTATCCACTGGCATCCAAACTAATCTTGAGTGGCTTTCAGTAATAATTTCAGT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS GCA 72 bp GCTGGTGCTTTTACCACACCCACTGCTCCCAACGAATaGCAGCGTCTGCCCAGGATCCACAGATACCGACAG +
Preference number: 6 (lower is better)
Translates to: AGAFTTPTAPNE*QRLPRIHRYRQ
Trigger: CTGTCGGTATCTGTGGATCCTGGGCAGACGCTGGCATTCGTTGGGAGCAGTGGGTGTGGTAAAAGCACCAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS CAA 90 bp CTCTCATTGTCCAGTGCTGAGGTAGCCATGTCCAGAAGCAGGATCTaGGGTTTCCGTATGAGGGCGCGGGCGATGGCTACCCTTTGCTTC +
Preference number: 6 (lower is better)
Translates to: LSLSSAEVAMSRSRI*GFRMRARAMATLCF
Trigger: GAAGCAAAGGGTAGCCATCGCCCGCGCCCTCATACGGAAACCCAAGATCCTGCTTCTGGACATGGCTACCTCAGCACTGGACAATGAGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS TCA 72 bp CCTAAAAGGAGCCCAGACAAAGCTGTCGACAGGCGCTaGAGGAAAAGGGCCATCTGGTCGGCAATGGCTTCA +
Preference number: 6 (lower is better)
Translates to: PKRSPDKAVDRR*RKRAIWSAMAS
Trigger: TGAAGCCATTGCCGACCAGATGGCCCTTTTCCTTCAGCGCCTGTCGACAGCTTTGTCTGGGCTCCTTTTAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS GCA 72 bp CTCCGTGAACTTGGCCACACTCAGACCTATGACGGCTaGCCCAATCCCAATGAGAGGACTGACAGCGAGAAT +
Preference number: 6 (lower is better)
Translates to: LRELGHTQTYDG*PNPNERTDSEN
Trigger: ATTCTCGCTGTCAGTCCTCTCATTGGGATTGGGGCAGCCGTCATAGGTCTGAGTGTGGCCAAGTTCACGGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS GCA 72 bp TTACCACACCCACTGCTCCCAACGAATGCCAGCGTCTaGCCAGGATCCACAGATACCGACAGTCCATTCAGA +
Preference number: 6 (lower is better)
Translates to: LPHPLLPTNASV*PGSTDTDSPFR
Trigger: TCTGAATGGACTGTCGGTATCTGTGGATCCTGGGCAGACGCTGGCATTCGTTGGGAGCAGTGGGTGTGGTAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS CCA 72 bp TCCCTGGTGTGTACTCGCCTTCATCCAGGACAAGTCTaGAGCCGTACCAGAAGGCCAGTGCATAACAGAAGA +
Preference number: 6 (lower is better)
Translates to: SLVCTRLHPGQV*SRTRRPVHNRR
Trigger: TCTTCTGTTATGCACTGGCCTTCTGGTACGGCTCCAGACTTGTCCTGGATGAAGGCGAGTACACACCAGGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS CCA 72 bp TCTCTCAGCCACCGGATGTTAAGAGAACGAATGTCATaGCCATCCAGAGTCACCATGCCTTCGCAGGGGTCA +
Preference number: 6 (lower is better)
Translates to: SLSHRMLRERMS*PSRVTMPSQGS
Trigger: TGACCCCTGCGAAGGCATGGTGACTCTGGATGGCCATGACATTCGTTCTCTTAACATCCGGTGGCTGAGAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS CAA 72 bp AGGATCTCGTACAATGGCCCGAGCAATAGCAATGCGTaGTTTCTCCCCGCGAGAGAGTTGAGAGCCCTGGAT +
Preference number: 6 (lower is better)
Translates to: RISYNGPSNSNA*FLPARELRALD
Trigger: ATCCAGGGCTCTCAACTCTCTCGCGGGGAGAAACAACGCATTGCTATTGCTCGGGCCATTGTACGAGATCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS TCA 72 bp TATTTCTCTGGGAGTGACATGACGAAGTCATGCAGCTaGGCCTGCTTTGCGGCAGCTATAGCTCTCTCCACG +
Preference number: 6 (lower is better)
Translates to: YFSGSDMTKSCS*ACFAAAIALST
Trigger: CGTGGAGAGAGCTATAGCTGCCGCAAAGCAGGCTCAGCTGCATGACTTCGTCATGTCACTCCCAGAGAAATA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS GCA 72 bp AAGGGAGTAGATGGGTGTGACTGCCCCATTAATGGCTaGACACAAAGCCCCTACCAGTATGTAGGGCCATTC +
Preference number: 6 (lower is better)
Translates to: KGVDGCDCPING*TQSPYQYVGPF
Trigger: GAATGGCCCTACATACTGGTAGGGGCTTTGTGTGCAGCCATTAATGGGGCAGTCACACCCATCTACTCCCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS CAA 72 bp TTATTCAGTGCTCCCTGTACTTTGGCCTCACTCTCATaGTCCAGTGCTGAGGTAGCCATGTCCAGAAGCAGG +
Preference number: 6 (lower is better)
Translates to: LFSAPCTLASLS*SSAEVAMSRSR
Trigger: CCTGCTTCTGGACATGGCTACCTCAGCACTGGACAATGAGAGTGAGGCCAAAGTACAGGGAGCACTGAATAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS CAA 90 bp GATAGTGGTGGAGAACAGAACTGGCTCCTGTTCCACGATCCCAATTaGATCTCTCAGCCACCGGATGTTAAGAGAACGAATGTCATGGCC +
Preference number: 6 (lower is better)
Translates to: DSGGEQNWLLFHDPN*ISQPPDVKRTNVMA
Trigger: GGCCATGACATTCGTTCTCTTAACATCCGGTGGCTGAGAGATCAAATTGGGATCGTGGAACAGGAGCCAGTTCTGTTCTCCACCACTATC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS CAA 90 bp CAAGATTTTAGGATCTCGTACAATGGCCCGAGCAATAGCAATGCGTaGTTTCTCCCCGCGAGAGAGTTGAGAGCCCTGGATCCCAACATT +
Preference number: 6 (lower is better)
Translates to: QDFRISYNGPSNSNA*FLPARELRALDPNI
Trigger: AATGTTGGGATCCAGGGCTCTCAACTCTCTCGCGGGGAGAAACAACGCATTGCTATTGCTCGGGCCATTGTACGAGATCCTAAAATCTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS GCA 72 bp AATAATCATGCCTGGCTGGGCCATTCCATGGAGCAATaGGCACACACTTCCCATAAACATCAGCCAGTTGTC +
Preference number: 6 (lower is better)
Translates to: NNHAWLGHSMEQ*AHTSHKHQPVV
Trigger: GACAACTGGCTGATGTTTATGGGAAGTGTGTGCGCATTGCTCCATGGAATGGCCCAGCCAGGCATGATTATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS GCA 72 bp ATCCAGGACAAGTCTGGAGCCGTACCAGAAGGCCAGTaGATAACAGAAGAAAATGAGACACCACATGTACCC +
Preference number: 6 (lower is better)
Translates to: IQDKSGAVPEGQ*ITEENETPHVP
Trigger: GGGTACATGTGGTGTCTCATTTTCTTCTGTTATGCACTGGCCTTCTGGTACGGCTCCAGACTTGTCCTGGAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS CCA 72 bp TCTGTCAGTATACCAAACACAATAATCATGCCTGGCTaGGCCATTCCATGGAGCAATGCGCACACACTTCCC +
Preference number: 6 (lower is better)
Translates to: SVSIPNTIIMPG*AIPWSNAHTLP
Trigger: GGGAAGTGTGTGCGCATTGCTCCATGGAATGGCCCAGCCAGGCATGATTATTGTGTTTGGTATACTGACAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS CCA 72 bp GCGGATGTTTTCTGCGATAGTGGTGGAGAACAGAACTaGCTCCTGTTCCACGATCCCAATTTGATCTCTCAG +
Preference number: 6 (lower is better)
Translates to: ADVFCDSGGEQN*LLFHDPNLISQ
Trigger: CTGAGAGATCAAATTGGGATCGTGGAACAGGAGCCAGTTCTGTTCTCCACCACTATCGCAGAAAACATCCGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS CAA 72 bp TGTCCATGTTGGATCTTATTCAGTGCTCCCTGTACTTaGGCCTCACTCTCATTGTCCAGTGCTGAGGTAGCC +
Preference number: 6 (lower is better)
Translates to: CPCWILFSAPCT*ASLSLSSAEVA
Trigger: GGCTACCTCAGCACTGGACAATGAGAGTGAGGCCAAAGTACAGGGAGCACTGAATAAGATCCAACATGGACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS CAA 90 bp TTAATAAATCTTCCCTCCACTCCAATTCCAGCCACGGTGCGGATATaGCTAAGGGCTTCGTTGGTGATCTGGCCAGCCTTCTCCAGAATT +
Preference number: 6 (lower is better)
Translates to: LINLPSTPIPATVRI*LRASLVIWPAFSRI
Trigger: AATTCTGGAGAAGGCTGGCCAGATCACCAACGAAGCCCTTAGCAATATCCGCACCGTGGCTGGAATTGGAGTGGAGGGAAGATTTATTAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS TCA 72 bp GAGAACAGAACTGGCTCCTGTTCCACGATCCCAATTTaGTCTCTCAGCCACCGGATGTTAAGAGAACGAATG +
Preference number: 6 (lower is better)
Translates to: ENRTGSCSTIPI*SLSHRMLRERM
Trigger: CATTCGTTCTCTTAACATCCGGTGGCTGAGAGATCAAATTGGGATCGTGGAACAGGAGCCAGTTCTGTTCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS TCA 72 bp GGACTTGTGATCACCTATAGCCAGTGGAGGTTCATGTaGCAGATGAGACAGCTGAGACTTAGATCGTTGACG +
Preference number: 6 (lower is better)
Translates to: GLVITYSQWRFM*QMRQLRLRSLT
Trigger: CGTCAACGATCTAAGTCTCAGCTGTCTCATCTGTCACATGAACCTCCACTGGCTATAGGTGATCACAAGTCC
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS TCA 72 bp GCGATGATATCTGAGTTCTGGATAGTAGACAAGCGATaGGCAATGACAATACAGGTCCGACCCTCTCTGGCT +
Preference number: 6 (lower is better)
Translates to: AMISEFWIVDKR*AMTIQVRPSLA
Trigger: AGCCAGAGAGGGTCGGACCTGTATTGTCATTGCTCATCGCTTGTCTACTATCCAGAACTCAGATATCATCGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS CCA 72 bp AGGCGATGGGCAACTGAGATGATTGTGTGTCCATGTTaGATCTTATTCAGTGCTCCCTGTACTTTGGCCTCA +
Preference number: 6 (lower is better)
Translates to: RRWATEMIVCPC*ILFSAPCTLAS
Trigger: TGAGGCCAAAGTACAGGGAGCACTGAATAAGATCCAACATGGACACACAATCATCTCAGTTGCCCATCGCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS CAA 72 bp GGAGAACAGAACTGGCTCCTGTTCCACGATCCCAATTaGATCTCTCAGCCACCGGATGTTAAGAGAACGAAT +
Preference number: 6 (lower is better)
Translates to: GEQNWLLFHDPN*ISQPPDVKRTN
Trigger: ATTCGTTCTCTTAACATCCGGTGGCTGAGAGATCAAATTGGGATCGTGGAACAGGAGCCAGTTCTGTTCTCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS CAA 72 bp GGCAGGGCCATAATGAAGTTGTATGCATTAGCATCCTaGGCAGCTTGGACTATGTCTTCCATTGTCGCCTCT +
Preference number: 6 (lower is better)
Translates to: GRAIMKLYALAS*AAWTMSSIVAS
Trigger: AGAGGCGACAATGGAAGACATAGTCCAAGCTGCCAAGGATGCTAATGCATACAACTTCATTATGGCCCTGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS CAA 72 bp ATTGACCATCATCCCAACTTGAGAGCCAGTAGCCCCTaGAACTTGGGAAGCATCTGTAGCAAGCCTAGTTGT +
Preference number: 6 (lower is better)
Translates to: IDHHPNLRASSP*NLGSICSKPSC
Trigger: ACAACTAGGCTTGCTACAGATGCTTCCCAAGTTCAAGGGGCTACTGGCTCTCAAGTTGGGATGATGGTCAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS CAA 90 bp ATGATTGTGTGTCCATGTTGGATCTTATTCAGTGCTCCCTGTACTTaGGCCTCACTCTCATTGTCCAGTGCTGAGGTAGCCATGTCCAGA +
Preference number: 6 (lower is better)
Translates to: MIVCPCWILFSAPCT*ASLSLSSAEVAMSR
Trigger: TCTGGACATGGCTACCTCAGCACTGGACAATGAGAGTGAGGCCAAAGTACAGGGAGCACTGAATAAGATCCAACATGGACACACAATCAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS CAA 90 bp GCTATAGCTCTCTCCACGGAGATCTCTTTGGTGTTGTCCCCATACTaGATGTTGTCCATTATGCTACAGTCAAATAACACGGGCTCCTGG +
Preference number: 6 (lower is better)
Translates to: AIALSTEISLVLSPY*MLSIMLQSNNTGSW
Trigger: CCAGGAGCCCGTGTTATTTGACTGTAGCATAATGGACAACATCAAGTATGGGGACAACACCAAAGAGATCTCCGTGGAGAGAGCTATAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS CAA 90 bp AATTGCTGTGGCAGGGCCATAATGAAGTTGTATGCATTAGCATCCTaGGCAGCTTGGACTATGTCTTCCATTGTCGCCTCTTCTCTACCA +
Preference number: 6 (lower is better)
Translates to: NCCGRAIMKLYALAS*AAWTMSSIVASSLP
Trigger: TGGTAGAGAAGAGGCGACAATGGAAGACATAGTCCAAGCTGCCAAGGATGCTAATGCATACAACTTCATTATGGCCCTGCCACAGCAATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS TCA 72 bp ATTCTCACCACCAAAAGCAGCCACTGTTCGAATAGATaGGAGGACTTCATCGGCAATAGACCCAGCTTTAGC +
Preference number: 6 (lower is better)
Translates to: ILTTKSSHCSNR*EDFIGNRPSFS
Trigger: GCTAAAGCTGGGTCTATTGCCGATGAAGTCCTCTCATCTATTCGAACAGTGGCTGCTTTTGGTGGTGAGAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS CCA 72 bp TATTATGACACAGAGGAAAATCTGGATCAGTGTCCCTaGTGTGTACTCGCCTTCATCCAGGACAAGTCTGGA +
Preference number: 6 (lower is better)
Translates to: YYDTEENLDQCP*CVLAFIQDKSG
Trigger: TCCAGACTTGTCCTGGATGAAGGCGAGTACACACCAGGGACACTGATCCAGATTTTCCTCTGTGTCATAATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS CAA 72 bp GGTGATCTGGCCAGCCTTCTCCAGAATTTCCTTGTCTaGAGAAGCGAATCCTGTCAGCATTTTTGTCTGTAC +
Preference number: 6 (lower is better)
Translates to: GDLASLLQNFLV*RSESCQHFCLY
Trigger: GTACAGACAAAAATGCTGACAGGATTCGCTTCTCAAGACAAGGAAATTCTGGAGAAGGCTGGCCAGATCACC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS CAA 72 bp GCAGCTATAGCTCTCTCCACGGAGATCTCTTTGGTGTaGTCCCCATACTTGATGTTGTCCATTATGCTACAG +
Preference number: 6 (lower is better)
Translates to: AAIALSTEISLV*SPYLMLSIMLQ
Trigger: CTGTAGCATAATGGACAACATCAAGTATGGGGACAACACCAAAGAGATCTCCGTGGAGAGAGCTATAGCTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS CAA 72 bp TTTGCGGCAGCTATAGCTCTCTCCACGGAGATCTCTTaGGTGTTGTCCCCATACTTGATGTTGTCCATTATG +
Preference number: 6 (lower is better)
Translates to: FAAAIALSTEIS*VLSPYLMLSIM
Trigger: CATAATGGACAACATCAAGTATGGGGACAACACCAAAGAGATCTCCGTGGAGAGAGCTATAGCTGCCGCAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS CAA 90 bp TGCTTTGCGGCAGCTATAGCTCTCTCCACGGAGATCTCTTTGGTGTaGTCCCCATACTTGATGTTGTCCATTATGCTACAGTCAAATAAC +
Preference number: 6 (lower is better)
Translates to: CFAAAIALSTEISLV*SPYLMLSIMLQSNN
Trigger: GTTATTTGACTGTAGCATAATGGACAACATCAAGTATGGGGACAACACCAAAGAGATCTCCGTGGAGAGAGCTATAGCTGCCGCAAAGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS TCA 72 bp GATCTAGCTTGTAACCATCTCCTGACATGCAGTCCATaGCGGGTTGCCTGTCTATTGTTTGGAAAATACTGG +
Preference number: 6 (lower is better)
Translates to: DLACNHLLTCSP*RVACLLFGKYW
Trigger: CCAGTATTTTCCAAACAATAGACAGGCAACCCGTCATGGACTGCATGTCAGGAGATGGTTACAAGCTAGATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS TCA 72 bp GTGATCTGGCCAGCCTTCTCCAGAATTTCCTTGTCTTaGGAAGCGAATCCTGTCAGCATTTTTGTCTGTACA +
Preference number: 6 (lower is better)
Translates to: VIWPAFSRISLS*EANPVSIFVCT
Trigger: TGTACAGACAAAAATGCTGACAGGATTCGCTTCTCAAGACAAGGAAATTCTGGAGAAGGCTGGCCAGATCAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS GCA 72 bp GTAAGAGAATGTTCTTCCAACAGCCGTTGCGCTCATTaGAATGGAAGAGACCACCCTGAAAACATAGCTGAA +
Preference number: 6 (lower is better)
Translates to: VRECSSNSRCAH*NGRDHPENIAE
Trigger: TTCAGCTATGTTTTCAGGGTGGTCTCTTCCATTGCAATGAGCGCAACGGCTGTTGGAAGAACATTCTCTTAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS CCA 72 bp AATATCTGTCAGTATACCAAACACAATAATCATGCCTaGCTGGGCCATTCCATGGAGCAATGCGCACACACT +
Preference number: 6 (lower is better)
Translates to: NICQYTKHNNHA*LGHSMEQCAHT
Trigger: AGTGTGTGCGCATTGCTCCATGGAATGGCCCAGCCAGGCATGATTATTGTGTTTGGTATACTGACAGATATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS TCA 72 bp AAGCCCATCACCATTCCTTTCCAAATTCCCCAGCGCTaGGCAAACATAAGATTTTTCTCATACCTTTCCACC +
Preference number: 6 (lower is better)
Translates to: KPITIPFQIPQR*ANIRFFSYLST
Trigger: GGTGGAAAGGTATGAGAAAAATCTTATGTTTGCTCAGCGCTGGGGAATTTGGAAAGGAATGGTGATGGGCTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS TCA 72 bp AATGGAAGGTCACATTGTGGAACTCAATTTCGCCCTTaGTTCGATCTAGCTTGTAACCATCTCCTGACATGC +
Preference number: 6 (lower is better)
Translates to: NGRSHCGTQFRP*FDLACNHLLTC
Trigger: GCATGTCAGGAGATGGTTACAAGCTAGATCGAATCAAGGGCGAAATTGAGTTCCACAATGTGACCTTCCATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS TCA 72 bp TCTCCACGGAGATCTCTTTGGTGTTGTCCCCATACTTaGTGTTGTCCATTATGCTACAGTCAAATAACACGG +
Preference number: 6 (lower is better)
Translates to: SPRRSLWCCPHT*CCPLCYSQITR
Trigger: CCGTGTTATTTGACTGTAGCATAATGGACAACATCAAGTATGGGGACAACACCAAAGAGATCTCCGTGGAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS CAA 72 bp CTCTCCACGGAGATCTCTTTGGTGTTGTCCCCATACTaGATGTTGTCCATTATGCTACAGTCAAATAACACG +
Preference number: 6 (lower is better)
Translates to: LSTEISLVLSPY*MLSIMLQSNNT
Trigger: CGTGTTATTTGACTGTAGCATAATGGACAACATCAAGTATGGGGACAACACCAAAGAGATCTCCGTGGAGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS CAA 90 bp CAGCGTCTGCCCAGGATCCACAGATACCGACAGTCCATTCAGAACTaGTATATCAGGTCGAGAAGGATATGTAAATTTACAGTCGATAAA +
Preference number: 6 (lower is better)
Translates to: QRLPRIHRYRQSIQN*YIRSRRICKFTVDK
Trigger: TTTATCGACTGTAAATTTACATATCCTTCTCGACCTGATATACAAGTTCTGAATGGACTGTCGGTATCTGTGGATCCTGGGCAGACGCTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS TCA 72 bp TTGCCTGTCTATTGTTTGGAAAATACTGGAAGCTGCTaGACACCCAGTGGAGAAGATTTCCAAACAAGAAGA +
Preference number: 6 (lower is better)
Translates to: LPVYCLENTGSC*TPSGEDFQTRR
Trigger: TCTTCTTGTTTGGAAATCTTCTCCACTGGGTGTTCAGCAGCTTCCAGTATTTTCCAAACAATAGACAGGCAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS CAA 72 bp TCATCGAACCAGCCAATATCTTGTCTTAACATTGCCTaGAAACCAAATTTACGCAGCCTTTTTGTGAGGAGC +
Preference number: 6 (lower is better)
Translates to: SSNQPISCLNIA*KPNLRSLFVRS
Trigger: GCTCCTCACAAAAAGGCTGCGTAAATTTGGTTTCAAGGCAATGTTAAGACAAGATATTGGCTGGTTCGATGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS CAA 72 bp CCCAGGATCCACAGATACCGACAGTCCATTCAGAACTaGTATATCAGGTCGAGAAGGATATGTAAATTTACA +
Preference number: 6 (lower is better)
Translates to: PRIHRYRQSIQN*YIRSRRICKFT
Trigger: TGTAAATTTACATATCCTTCTCGACCTGATATACAAGTTCTGAATGGACTGTCGGTATCTGTGGATCCTGGG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS CAA 90 bp TTTTTGAGGTCATCGAACCAGCCAATATCTTGTCTTAACATTGCCTaGAAACCAAATTTACGCAGCCTTTTTGTGAGGAGCTCTCCAGAT +
Preference number: 6 (lower is better)
Translates to: FLRSSNQPISCLNIA*KPNLRSLFVRSSPD
Trigger: ATCTGGAGAGCTCCTCACAAAAAGGCTGCGTAAATTTGGTTTCAAGGCAATGTTAAGACAAGATATTGGCTGGTTCGATGACCTCAAAAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS CAA 90 bp GAAGCATCTGTAGCAAGCCTAGTTGTTAGTACTCCAGGATTATTTTaGAGGTCATCGAACCAGCCAATATCTTGTCTTAACATTGCCTTG +
Preference number: 6 (lower is better)
Translates to: EASVASLVVSTPGLF*RSSNQPISCLNIAL
Trigger: CAAGGCAATGTTAAGACAAGATATTGGCTGGTTCGATGACCTCAAAAATAATCCTGGAGTACTAACAACTAGGCTTGCTACAGATGCTTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS CAA 90 bp AACCCACAGCTTGTTCCGTTTGTCATGTTCTGGTTGAAGGAGCTGTaGATCCATACAATGGTGTTATTCATACACACTTTTTCTGGAATA +
Preference number: 6 (lower is better)
Translates to: NPQLVPFVMFWLKEL*IHTMVLFIHTFSGI
Trigger: TATTCCAGAAAAAGTGTGTATGAATAACACCATTGTATGGATCAACAGCTCCTTCAACCAGAACATGACAAACGGAACAAGCTGTGGGTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS CAA 72 bp TATGCCTGTTTCTTTGTGAGTATTATCTTCTTGGCTTaGCAGGGTCACAAGCATGAAGTAGACACCTTTTCT +
Preference number: 6 (lower is better)
Translates to: YACFFVSIIFLA*QGHKHEVDTFS
Trigger: AGAAAAGGTGTCTACTTCATGCTTGTGACCCTGCAAAGCCAAGAAGATAATACTCACAAAGAAACAGGCATA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS CAA 90 bp TGTATCTTTTCCCTTTATGCCTGTTTCTTTGTGAGTATTATCTTCTaGGCTTTGCAGGGTCACAAGCATGAAGTAGACACCTTTTCTTTC +
Preference number: 6 (lower is better)
Translates to: CIFSLYACFFVSIIF*ALQGHKHEVDTFSF
Trigger: GAAAGAAAAGGTGTCTACTTCATGCTTGTGACCCTGCAAAGCCAAGAAGATAATACTCACAAAGAAACAGGCATAAAGGGAAAAGATACA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS CAA 90 bp GCAATGGCTTCATCAATTTTATTAATATCATCAGAGAATCTTGAATaGAGCTCTCCCACAGAAGTGCAGTCAAACCATCCGATTTCCATT +
Preference number: 6 (lower is better)
Translates to: AMASSILLISSENLE*SSPTEVQSNHPISI
Trigger: AATGGAAATCGGATGGTTTGACTGCACTTCTGTGGGAGAGCTCAATTCAAGATTCTCTGATGATATTAATAAAATTGATGAAGCCATTGC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS CAA 90 bp TCGAGAAGGATATGTAAATTTACAGTCGATAAAATCAATCTTCCCTaGGAAGTTGTCCCATTTTTCACCTGCTCCACTGTACACATCAAT +
Preference number: 6 (lower is better)
Translates to: SRRICKFTVDKINLP*EVVPFFTCSTVHIN
Trigger: ATTGATGTGTACAGTGGAGCAGGTGAAAAATGGGACAACTTCCAAGGGAAGATTGATTTTATCGACTGTAAATTTACATATCCTTCTCGA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS CCA 72 bp TATGTAAATTTACAGTCGATAAAATCAATCTTCCCTTaGAAGTTGTCCCATTTTTCACCTGCTCCACTGTAC +
Preference number: 6 (lower is better)
Translates to: YVNLQSIKSIFP*KLSHFSPAPLY
Trigger: GTACAGTGGAGCAGGTGAAAAATGGGACAACTTCCAAGGGAAGATTGATTTTATCGACTGTAAATTTACATA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2
CDS CAA 72 bp ATATGTAAATTTACAGTCGATAAAATCAATCTTCCCTaGGAAGTTGTCCCATTTTTCACCTGCTCCACTGTA +
Preference number: 6 (lower is better)
Translates to: ICKFTVDKINLP*EVVPFFTCSTV
Trigger: TACAGTGGAGCAGGTGAAAAATGGGACAACTTCCAAGGGAAGATTGATTTTATCGACTGTAAATTTACATAT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000102709.8
ENSMUST00000102710.10
ENSMUST00000180142.2