RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ABCA8B (Mus musculus)

Ensembl gene IDs: ENSMUSG00000020620

Ensembl transcript IDs: ENSMUST00000020948.15, ENSMUST00000106669.3

Found 258 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TCTTCTGGATTGAGCCTCCTGCTACTGATTTGTGTTTGGTGTTTGTaGTTGCACTGGACAGCTGCTACTGATTCATGTTTGGAACTGCCC +
Preference number: 1 (lower is better)
Translates to: SSGLSLLLLICVWCL*LHWTAATDSCLELP
Trigger: GGGCAGTTCCAAACATGAATCAGTAGCAGCTGTCCAGTGCAATCACAAACACCAAACACAAATCAGTAGCAGGAGGCTCAATCCAGAAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020948.15
3UTR CCA 90 bp TTCAACATTCTACAGAACTATGGCTATAAGTGTCCTAAAGGGATGTaGAGAAGGCTAGACAAGGTTCCCTGTGGTCCAGCCTCTATACGG +
Preference number: 1 (lower is better)
Translates to: FNILQNYGYKCPKGM*RRLDKVPCGPASIR
Trigger: CCGTATAGAGGCTGGACCACAGGGAACCTTGTCTAGCCTTCTCCACATCCCTTTAGGACACTTATAGCCATAGTTCTGTAGAATGTTGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
3UTR GCA 90 bp GTTTGTGATTGCACTGGACAGCTGCTACTGATTCATGTTTGGAACTaGCCCAAAGCACTACTTCCAAATGATATTCACATCCCTCATTTC +
Preference number: 1 (lower is better)
Translates to: VCDCTGQLLLIHVWN*PKALLPNDIHIPHF
Trigger: GAAATGAGGGATGTGAATATCATTTGGAAGTAGTGCTTTGGGGCAGTTCCAAACATGAATCAGTAGCAGCTGTCCAGTGCAATCACAAAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020948.15
3UTR GCA 90 bp ATTAAGAAAAGACCTGTTCTGTCCCATGATAAGGAAAAGCTTGCCTaGCCCTTCTGCTTTCTCTACAGCTTCTTCTTATTCCCTCTTTCC +
Preference number: 1 (lower is better)
Translates to: IKKRPVLSHDKEKLA*PFCFLYSFFLFPLS
Trigger: GGAAAGAGGGAATAAGAAGAAGCTGTAGAGAAAGCAGAAGGGGCAGGCAAGCTTTTCCTTATCATGGGACAGAACAGGTCTTTTCTTAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020948.15
3UTR CCA 90 bp TTTGGTGTTTGTGATTGCACTGGACAGCTGCTACTGATTCATGTTTaGAACTGCCCCAAAGCACTACTTCCAAATGATATTCACATCCCT +
Preference number: 1 (lower is better)
Translates to: FGVCDCTGQLLLIHV*NCPKALLPNDIHIP
Trigger: AGGGATGTGAATATCATTTGGAAGTAGTGCTTTGGGGCAGTTCCAAACATGAATCAGTAGCAGCTGTCCAGTGCAATCACAAACACCAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020948.15
3UTR CCA 90 bp ATTCTGTGGGCTCATACCTATTTGGTGGATCCTCAAGGTTTCTTCTaGATTGAGCCTCCTGCTACTGATTTGTGTTTGGTGTTTGTGATT +
Preference number: 1 (lower is better)
Translates to: ILWAHTYLVDPQGFF*IEPPATDLCLVFVI
Trigger: AATCACAAACACCAAACACAAATCAGTAGCAGGAGGCTCAATCCAGAAGAAACCTTGAGGATCCACCAAATAGGTATGAGCCCACAGAAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020948.15
3UTR CAA 90 bp GCTTGTCCTGTGATGGCTCCTGACATTCTGTGGGCTCATACCTATTaGGTGGATCCTCAAGGTTTCTTCTGGATTGAGCCTCCTGCTACT +
Preference number: 2 (lower is better)
Translates to: ACPVMAPDILWAHTY*VDPQGFFWIEPPAT
Trigger: AGTAGCAGGAGGCTCAATCCAGAAGAAACCTTGAGGATCCACCAAATAGGTATGAGCCCACAGAATGTCAGGAGCCATCACAGGACAAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020948.15
3UTR-3UTR TCA 90 bp GTTCCCTGTGGTCCAGCCTCTATACGGTACTCACCCCTGTTCTCCAATCCCCGAAACAACACAGTCTTATaGAGGAAGAGGAGAGATATT +
Preference number: 2 (lower is better)
Translates to: VPCGPASIRYSPLFSNPRNNTVL*RKRRDI
Trigger: AATATCTCTCCTCTTCCTTCATAAGACTGTGTTGTT...TCGGGGATTGGAGAACAGGGGTGAGTACCGTATAGAGGCTGGACCACAGGGAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
3UTR-3UTR TCA 90 bp ACAAGGTTCCCTGTGGTCCAGCCTCTATACGGTACTCACCCCTGTTCTCCAATCAACAACACAGTCTTATaGAGGAAGAGGAGAGATATT +
Preference number: 2 (lower is better)
Translates to: TRFPVVQPLYGTHPCSPINNTVL*RKRRDI
Trigger: AATATCTCTCCTCTTCCTTCATAAGACTGTGTTGTT...GATTGGAGAACAGGGGTGAGTACCGTATAGAGGCTGGACCACAGGGAACCTTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
3UTR-3UTR TCA 90 bp ACGTGGGAGACTGGCAGAGTTCTCATTGCAGTTTTGACTATCAGAAAAGGACCTCCTACCTTTGGTTGGTaGGCTAGAAGAGAGGTTGAA +
Preference number: 2 (lower is better)
Translates to: TWETGRVLIAVLTIRKGPPTFGW*ARREVE
Trigger: TTCAACCTCTCTTCTAGCTCACCAACCAAAGGTAGG...AGGTCCTTTTCTGATAGTCAAAACTGCAATGAGAACTCTGCCAGTCTCCCACGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020948.15
3UTR-3UTR GCA 90 bp ACGTGGGAGACTGGCAGAGTTCTCATTGCAGTTTTGACTATCAGAAAAGGACCTATTCATGTTTGGAACTaGCCCAAAGCACTACTTCCA +
Preference number: 2 (lower is better)
Translates to: TWETGRVLIAVLTIRKGPIHVWN*PKALLP
Trigger: TGGAAGTAGTGCTTTGGGGCAGTTCCAAACATGAAT...AGGTCCTTTTCTGATAGTCAAAACTGCAATGAGAACTCTGCCAGTCTCCCACGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020948.15
3UTR-3UTR GCA 90 bp TGTCTCTTCTCTTTGTCCTCAGCACTTATACATCGTTCAGAATACATGATCACACTTTCTCCTGGGCCTTaGCTATTGAAGTTCCGTCAT +
Preference number: 2 (lower is better)
Translates to: CLFSLSSALIHRSEYMITLSPGP*LLKFRH
Trigger: ATGACGGAACTTCAATAGGCAAGGCCCAGGAGAAAG...TGTGATCATGTATTCTGAACGATGTATAAGTGCTGAGGACAAAGAGAAGAGACA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020948.15
3UTR-3UTR GCA 90 bp TCCCAAAGGTGTGCCTTTCTTTACTTCTATGCTCTTTTTGAGTTGAAATCTTTCAGATCTGCAGAGATCTaGTCAAAAGGGTGGACTAAT +
Preference number: 2 (lower is better)
Translates to: SQRCAFLYFYALFELKSFRSAEI*SKGWTN
Trigger: ATTAGTCCACCCTTTTGAGCAGATCTCTGCAGATCT...GAAAGATTTCAACTCAAAAAGAGCATAGAAGTAAAGAAAGGCACACCTTTGGGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000020948.15
3UTR CAA 90 bp TATTCACATCCCTCATTTCCTATTAACTTTTCTTCTTTCCTACCTTaGGTTGGTGAGCTAGAAGAGAGGTTGAAGAACTTAAGAACCCTT +
Preference number: 2 (lower is better)
Translates to: YSHPSFPINFSSFLP*VGELEERLKNLRTL
Trigger: AAGGGTTCTTAAGTTCTTCAACCTCTCTTCTAGCTCACCAACCAAAGGTAGGAAAGAAGAAAAGTTAATAGGAAATGAGGGATGTGAATA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020948.15
3UTR TCA 72 bp CACCTGCTAGTTATTAGCTTGTCCTGTGATGGCTCCTaGCATTCTGTGGGCTCATACCTATTTGGTGGATCC +
Preference number: 3 (lower is better)
Translates to: HLLVISLSCDGS*HSVGSYLFGGS
Trigger: GGATCCACCAAATAGGTATGAGCCCACAGAATGTCAGGAGCCATCACAGGACAAGCTAATAACTAGCAGGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020948.15
3UTR-3UTR CAA 90 bp ACGTGGGAGACTGGCAGAGTTCTCATTGCAGTTTTGACTATCAGAAAAGGACCTGCTACTGATTCATGTTaGGAACTGCCCCAAAGCACT +
Preference number: 3 (lower is better)
Translates to: TWETGRVLIAVLTIRKGPATDSC*ELPQST
Trigger: AGTGCTTTGGGGCAGTTCCAAACATGAATCAGTAGC...AGGTCCTTTTCTGATAGTCAAAACTGCAATGAGAACTCTGCCAGTCTCCCACGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000020948.15
3UTR GCA 72 bp CTGTCCCATGATAAGGAAAAGCTTGCCTGCCCCTTCTaGTTTCTCTACAGCTTCTTCTTATTCCCTCTTTCC +
Preference number: 3 (lower is better)
Translates to: LSHDKEKLACPF*FLYSFFLFPLS
Trigger: GGAAAGAGGGAATAAGAAGAAGCTGTAGAGAAAGCAGAAGGGGCAGGCAAGCTTTTCCTTATCATGGGACAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020948.15
3UTR-3UTR CAA 90 bp TCTGTCCTCAGCTCAGTTCTGTCTCTTCTCTTTGTCCTCAGCACTTATACATCGTCTTCTTTCCTACCTTaGGTTGGTGAGCTAGAAGAG +
Preference number: 3 (lower is better)
Translates to: SVLSSVLSLLFVLSTYTSSSFLP*VGELEE
Trigger: CTCTTCTAGCTCACCAACCAAAGGTAGGAAAGAAGA...CGATGTATAAGTGCTGAGGACAAAGAGAAGAGACAGAACTGAGCTGAGGACAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020948.15
3UTR TCA 72 bp TGTTTGGTGTTTGTGATTGCACTGGACAGCTGCTACTaGTTCATGTTTGGAACTGCCCCAAAGCACTACTTC +
Preference number: 3 (lower is better)
Translates to: CLVFVIALDSCY*FMFGTAPKHYF
Trigger: GAAGTAGTGCTTTGGGGCAGTTCCAAACATGAATCAGTAGCAGCTGTCCAGTGCAATCACAAACACCAAACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020948.15
3UTR TCA 72 bp ACACGTGGGAGACTGGCAGAGTTCTCATTGCAGTTTTaGCTATCAGAAAAGGACCTAATAGCAGTCCCACTA +
Preference number: 3 (lower is better)
Translates to: TRGRLAEFSLQF*LSEKDLIAVPL
Trigger: TAGTGGGACTGCTATTAGGTCCTTTTCTGATAGTCAAAACTGCAATGAGAACTCTGCCAGTCTCCCACGTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020948.15
3UTR GCA 72 bp AGACCTGTTCTGTCCCATGATAAGGAAAAGCTTGCCTaGCCCTTCTGCTTTCTCTACAGCTTCTTCTTATTC +
Preference number: 3 (lower is better)
Translates to: RPVLSHDKEKLA*PFCFLYSFFLF
Trigger: GAATAAGAAGAAGCTGTAGAGAAAGCAGAAGGGGCAGGCAAGCTTTTCCTTATCATGGGACAGAACAGGTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020948.15
3UTR CCA 72 bp TTATTAGCTTGTCCTGTGATGGCTCCTGACATTCTGTaGGCTCATACCTATTTGGTGGATCCTCAAGGTTTC +
Preference number: 3 (lower is better)
Translates to: LLACPVMAPDIL*AHTYLVDPQGF
Trigger: GAAACCTTGAGGATCCACCAAATAGGTATGAGCCCACAGAATGTCAGGAGCCATCACAGGACAAGCTAATAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020948.15
3UTR TCA 72 bp TTGAGCCTCCTGCTACTGATTTGTGTTTGGTGTTTGTaGTTGCACTGGACAGCTGCTACTGATTCATGTTTG +
Preference number: 3 (lower is better)
Translates to: LSLLLLICVWCL*LHWTAATDSCL
Trigger: CAAACATGAATCAGTAGCAGCTGTCCAGTGCAATCACAAACACCAAACACAAATCAGTAGCAGGAGGCTCAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020948.15
3UTR CCA 72 bp TGTGATTGCACTGGACAGCTGCTACTGATTCATGTTTaGAACTGCCCCAAAGCACTACTTCCAAATGATATT +
Preference number: 3 (lower is better)
Translates to: CDCTGQLLLIHV*NCPKALLPNDI
Trigger: AATATCATTTGGAAGTAGTGCTTTGGGGCAGTTCCAAACATGAATCAGTAGCAGCTGTCCAGTGCAATCACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020948.15
3UTR TCA 72 bp CTTTGTCCTCAGCACTTATACATCGTTCAGAATACATaGTCACATGGTAAAAAGTTCATTACAAGTTTACAC +
Preference number: 3 (lower is better)
Translates to: LCPQHLYIVQNT*SHGKKFITSLH
Trigger: GTGTAAACTTGTAATGAACTTTTTACCATGTGATCATGTATTCTGAACGATGTATAAGTGCTGAGGACAAAG
35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020948.15
3UTR GCA 72 bp TTTATACATTTCCATTCAAACCAGTTGGGCTTAGTTTaGATACATTCTCACAACTGCATACTTATACACACA +
Preference number: 3 (lower is better)
Translates to: FIHFHSNQLGLV*IHSHNCILIHT
Trigger: TGTGTGTATAAGTATGCAGTTGTGAGAATGTATGCAAACTAAGCCCAACTGGTTTGAATGGAAATGTATAAA
35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020948.15
CDS-3UTR GCA 90 bp TCCCTGTGGTCCAGCCTCTATACGGTACTCACCCCTGTTCTCCAATCCCCGAGGGAGGACCACACGGTCTaGTCTGCGCTCCTTCAGGAG +
Preference number: 4 (lower is better)
Translates to: SLWSSLYTVLTPVLQSPREDHTV*SALLQE
Trigger: CTCCTGAAGGAGCGCAGAGCAGACCGTGTGGTCCTC...CCTCGGGGATTGGAGAACAGGGGTGAGTACCGTATAGAGGCTGGACCACAGGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR TCA 90 bp ACAAGGTTCCCTGTGGTCCAGCCTCTATACGGTACTCACCCCTGTTCTCCAATCCCACACCCGGTGCCTTaGAAAGGGATCCAGGCCAGC +
Preference number: 4 (lower is better)
Translates to: TRFPVVQPLYGTHPCSPIPHPVP*KGIQAS
Trigger: GCTGGCCTGGATCCCTTTTCAAGGCACCGGGTGTGG...GATTGGAGAACAGGGGTGAGTACCGTATAGAGGCTGGACCACAGGGAACCTTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR TCA 90 bp GGTTCCCTGTGGTCCAGCCTCTATACGGTACTCACCCCTGTTCTCCAATCCCCGTCTCTTCACTCCCTCTaGCAGCGTCTTCACAGGAGA +
Preference number: 4 (lower is better)
Translates to: GSLWSSLYTVLTPVLQSPSLHSL*QRLHRR
Trigger: TCTCCTGTGAAGACGCTGTCAGAGGGAGTGAAGAGA...CGGGGATTGGAGAACAGGGGTGAGTACCGTATAGAGGCTGGACCACAGGGAACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR GCA 90 bp GGTTCCCTGTGGTCCAGCCTCTATACGGTACTCACCCCTGTTCTCCAATCCCCGGGGTGTCCCCTTCTCTaGTCCCTTTCAGTAACACCT +
Preference number: 4 (lower is better)
Translates to: GSLWSSLYTVLTPVLQSPGCPLL*SLSVTP
Trigger: AGGTGTTACTGAAAGGGAGCAGAGAAGGGGACACCC...CGGGGATTGGAGAACAGGGGTGAGTACCGTATAGAGGCTGGACCACAGGGAACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR GCA 90 bp GTTCCCTGTGGTCCAGCCTCTATACGGTACTCACCCCTGTTCTCCAATCCCCGAGCGCAAGCCCCTCACTaGAGCAAATATCTCCAGGTG +
Preference number: 4 (lower is better)
Translates to: VPCGPASIRYSPLFSNPRAQAPH*SKYLQV
Trigger: CACCTGGAGATATTTGCTGCAGTGAGGGGCTTGCGC...TCGGGGATTGGAGAACAGGGGTGAGTACCGTATAGAGGCTGGACCACAGGGAAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR GCA 90 bp GAGAAGGCTAGACAAGGTTCCCTGTGGTCCAGCCTCTATACGGTACTCACCCCTTTGAGGGGCTCCACCTaGTCGAGGGTCTTCACCTTC +
Preference number: 4 (lower is better)
Translates to: EKARQGSLWSSLYTVLTPLRGST*SRVFTF
Trigger: GAAGGTGAAGACCCTCGAGCAGGTGGAGCCCCTCAA...AGGGGTGAGTACCGTATAGAGGCTGGACCACAGGGAACCTTGTCTAGCCTTCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR CCA 90 bp GTTCCCTGTGGTCCAGCCTCTATACGGTACTCACCCCTGTTCTCCAATCCCCGACCGGAGACCCGCAGCTaGAACCAAGCTCTGTTCTTA +
Preference number: 4 (lower is better)
Translates to: VPCGPASIRYSPLFSNPRPETRS*NQALFL
Trigger: TAAGAACAGAGCTTGGTTCCAGCTGCGGGTCTCCGG...TCGGGGATTGGAGAACAGGGGTGAGTACCGTATAGAGGCTGGACCACAGGGAAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR TCA 90 bp GTTCCCTGTGGTCCAGCCTCTATACGGTACTCACCCCTGTTCTCCAATCCCCGATCTCTTCACTCCCTCTaGCAGCGTCTTCACAGGAGA +
Preference number: 4 (lower is better)
Translates to: VPCGPASIRYSPLFSNPRSLHSL*QRLHRR
Trigger: TCTCCTGTGAAGACGCTGTCAGAGGGAGTGAAGAGA...TCGGGGATTGGAGAACAGGGGTGAGTACCGTATAGAGGCTGGACCACAGGGAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR GCA 90 bp GAGAAGGCTAGACAAGGTTCCCTGTGGTCCAGCCTCTATACGGTACTCACCCCTTTGCTGCCTCCAGAGTaGCATGCCGTCTGTCTTCTC +
Preference number: 4 (lower is better)
Translates to: EKARQGSLWSSLYTVLTPLLPPE*HAVCLL
Trigger: GAGAAGACAGACGGCATGGCACTCTGGAGGCAGCAA...AGGGGTGAGTACCGTATAGAGGCTGGACCACAGGGAACCTTGTCTAGCCTTCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR CCA 90 bp GAGAAGGCTAGACAAGGTTCCCTGTGGTCCAGCCTCTATACGGTACTCACCCCTGTCCCAGATCCTTGGTaGGCACTGAAGACAGGTCAG +
Preference number: 4 (lower is better)
Translates to: EKARQGSLWSSLYTVLTPVPDPW*ALKTGQ
Trigger: CTGACCTGTCTTCAGTGCCCACCAAGGATCTGGGAC...AGGGGTGAGTACCGTATAGAGGCTGGACCACAGGGAACCTTGTCTAGCCTTCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR TCA 90 bp GTTCCCTGTGGTCCAGCCTCTATACGGTACTCACCCCTGTTCTCCAATCCCCGAGCATTGATGGCAGCTTaGAGAGCCACAAATCCTTCC +
Preference number: 4 (lower is better)
Translates to: VPCGPASIRYSPLFSNPRALMAA*RATNPS
Trigger: GGAAGGATTTGTGGCTCTTCAAGCTGCCATCAATGC...TCGGGGATTGGAGAACAGGGGTGAGTACCGTATAGAGGCTGGACCACAGGGAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR TCA 90 bp GTTCCCTGTGGTCCAGCCTCTATACGGTACTCACCCCTGTTCTCCAATCCCCGAGCCTCCCATTGGAGATaGACACTTTCCTATCAGCCA +
Preference number: 4 (lower is better)
Translates to: VPCGPASIRYSPLFSNPRASHWR*TLSYQP
Trigger: TGGCTGATAGGAAAGTGTTCATCTCCAATGGGAGGC...TCGGGGATTGGAGAACAGGGGTGAGTACCGTATAGAGGCTGGACCACAGGGAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR GCA 90 bp TCCCTGTGGTCCAGCCTCTATACGGTACTCACCCCTGTTCTCCAATCCCCGAGGTTCCAAGTAGCCCGTTaGTCAGGATGTCCATCAGAA +
Preference number: 4 (lower is better)
Translates to: SLWSSLYTVLTPVLQSPRFQVAR*SGCPSE
Trigger: TTCTGATGGACATCCTGAGCAACGGGCTACTTGGAA...CCTCGGGGATTGGAGAACAGGGGTGAGTACCGTATAGAGGCTGGACCACAGGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR GCA 90 bp GGTTCCCTGTGGTCCAGCCTCTATACGGTACTCACCCCTGTTCTCCAATCCCCGCCTTTCAGTAACACCTaGCCAGCTGTGACTTTTGTG +
Preference number: 4 (lower is better)
Translates to: GSLWSSLYTVLTPVLQSPPFSNT*PAVTFV
Trigger: CACAAAAGTCACAGCTGGGCAGGTGTTACTGAAAGG...CGGGGATTGGAGAACAGGGGTGAGTACCGTATAGAGGCTGGACCACAGGGAACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR CCA 90 bp ACAAGGTTCCCTGTGGTCCAGCCTCTATACGGTACTCACCCCTGTTCTCCAATCCCGGAGACCCGCAGCTaGAACCAAGCTCTGTTCTTA +
Preference number: 4 (lower is better)
Translates to: TRFPVVQPLYGTHPCSPIPETRS*NQALFL
Trigger: TAAGAACAGAGCTTGGTTCCAGCTGCGGGTCTCCGG...GATTGGAGAACAGGGGTGAGTACCGTATAGAGGCTGGACCACAGGGAACCTTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR TCA 90 bp GAGAAGGCTAGACAAGGTTCCCTGTGGTCCAGCCTCTATACGGTACTCACCCCTGCCTCCCATTGGAGATaGACACTTTCCTATCAGCCA +
Preference number: 4 (lower is better)
Translates to: EKARQGSLWSSLYTVLTPASHWR*TLSYQP
Trigger: TGGCTGATAGGAAAGTGTTCATCTCCAATGGGAGGC...AGGGGTGAGTACCGTATAGAGGCTGGACCACAGGGAACCTTGTCTAGCCTTCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR TCA 90 bp GGTTCCCTGTGGTCCAGCCTCTATACGGTACTCACCCCTGTTCTCCAATCCCCGAGCTGCAAACTTAAGTaGTACCCAACTCCCCATTTC +
Preference number: 4 (lower is better)
Translates to: GSLWSSLYTVLTPVLQSPSCKLK*YPTPHF
Trigger: GAAATGGGGAGTTGGGTATCACTTAAGTTTGCAGCT...CGGGGATTGGAGAACAGGGGTGAGTACCGTATAGAGGCTGGACCACAGGGAACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR TCA 90 bp GGTTCCCTGTGGTCCAGCCTCTATACGGTACTCACCCCTGTTCTCCAATCCCCGCTCTGTTTCCCTAAGTaGAGAGAGAGTTTGCTCCAT +
Preference number: 4 (lower is better)
Translates to: GSLWSSLYTVLTPVLQSPLCFPK*RESLLH
Trigger: ATGGAGCAAACTCTCTCTTCACTTAGGGAAACAGAG...CGGGGATTGGAGAACAGGGGTGAGTACCGTATAGAGGCTGGACCACAGGGAACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR TCA 90 bp GGTTCCCTGTGGTCCAGCCTCTATACGGTACTCACCCCTGTTCTCCAATCCCCGGAATCTCACCTTTCCTaGCACAAAACGAGACATTCC +
Preference number: 4 (lower is better)
Translates to: GSLWSSLYTVLTPVLQSPESHLS*HKTRHS
Trigger: GGAATGTCTCGTTTTGTGTCAGGAAAGGTGAGATTC...CGGGGATTGGAGAACAGGGGTGAGTACCGTATAGAGGCTGGACCACAGGGAACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR GCA 90 bp AGGTTCCCTGTGGTCCAGCCTCTATACGGTACTCACCCCTGTTCTCCAATCCCCTTGGCTGCAGGGATGTaGTGTTTAACAAGCGATGTG +
Preference number: 4 (lower is better)
Translates to: RFPVVQPLYGTHPCSPIPLAAGM*CLTSDV
Trigger: CACATCGCTTGTTAAACAGCACATCCCTGCAGCCAA...GGGGATTGGAGAACAGGGGTGAGTACCGTATAGAGGCTGGACCACAGGGAACCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR GCA 90 bp AGGTTCCCTGTGGTCCAGCCTCTATACGGTACTCACCCCTGTTCTCCAATCCCCGCAAATATCTCCAGGTaGTCCTTCACAGTGAGGTTG +
Preference number: 4 (lower is better)
Translates to: RFPVVQPLYGTHPCSPIPANISR*SFTVRL
Trigger: CAACCTCACTGTGAAGGAGCACCTGGAGATATTTGC...GGGGATTGGAGAACAGGGGTGAGTACCGTATAGAGGCTGGACCACAGGGAACCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR GCA 90 bp GTTCCCTGTGGTCCAGCCTCTATACGGTACTCACCCCTGTTCTCCAATCCCCGAGCAAATATCTCCAGGTaGTCCTTCACAGTGAGGTTG +
Preference number: 4 (lower is better)
Translates to: VPCGPASIRYSPLFSNPRANISR*SFTVRL
Trigger: CAACCTCACTGTGAAGGAGCACCTGGAGATATTTGC...TCGGGGATTGGAGAACAGGGGTGAGTACCGTATAGAGGCTGGACCACAGGGAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR CCA 90 bp GAGAAGGCTAGACAAGGTTCCCTGTGGTCCAGCCTCTATACGGTACTCACCCCTTTTCCCGTGGAATTCTaGGGACACCGGTTCAAACGA +
Preference number: 4 (lower is better)
Translates to: EKARQGSLWSSLYTVLTPFPVEF*GHRFKR
Trigger: TCGTTTGAACCGGTGTCCCCAGAATTCCACGGGAAA...AGGGGTGAGTACCGTATAGAGGCTGGACCACAGGGAACCTTGTCTAGCCTTCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR CCA 90 bp TCCCTGTGGTCCAGCCTCTATACGGTACTCACCCCTGTTCTCCAATCCCCGAGGTTAAGCCTCTTCCTGTaGGAGGAGCTTCCACTTTAT +
Preference number: 4 (lower is better)
Translates to: SLWSSLYTVLTPVLQSPRLSLFL*EELPLY
Trigger: ATAAAGTGGAAGCTCCTCCCACAGGAAGAGGCTTAA...CCTCGGGGATTGGAGAACAGGGGTGAGTACCGTATAGAGGCTGGACCACAGGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR TCA 90 bp TCCCTGTGGTCCAGCCTCTATACGGTACTCACCCCTGTTCTCCAATCCCCGAGGTGGCTATCAGACAGTTaGCATCTTCATACAGTCCAT +
Preference number: 4 (lower is better)
Translates to: SLWSSLYTVLTPVLQSPRWLSDS*HLHTVH
Trigger: ATGGACTGTATGAAGATGTCAACTGTCTGATAGCCA...CCTCGGGGATTGGAGAACAGGGGTGAGTACCGTATAGAGGCTGGACCACAGGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR TCA 90 bp ACAAGGTTCCCTGTGGTCCAGCCTCTATACGGTACTCACCCCTGTTCTCCAATCTTCCCCAGAAGATGGTaGGAAGAAACACAGACAGGC +
Preference number: 4 (lower is better)
Translates to: TRFPVVQPLYGTHPCSPIFPRRW*EETQTG
Trigger: GCCTGTCTGTGTTTCTTCTCACCATCTTCTGGGGAA...GATTGGAGAACAGGGGTGAGTACCGTATAGAGGCTGGACCACAGGGAACCTTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020948.15
CDS-3UTR TCA 90 bp TCCCTGTGGTCCAGCCTCTATACGGTACTCACCCCTGTTCTCCAATCCCCGAGGAGTCCATTAACGACATaGAGAGGAAGACAAAGCAGT +
Preference number: 4 (lower is better)
Translates to: SLWSSLYTVLTPVLQSPRSPLTT*RGRQSS
Trigger: ACTGCTTTGTCTTCCTCTTCATGTCGTTAATGGACT...CCTCGGGGATTGGAGAACAGGGGTGAGTACCGTATAGAGGCTGGACCACAGGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR GCA 90 bp GTTCCCTGTGGTCCAGCCTCTATACGGTACTCACCCCTGTTCTCCAATCCCCGATGCCATGAAAGGGGTTaGAGCTACCTTCTCCATTAT +
Preference number: 4 (lower is better)
Translates to: VPCGPASIRYSPLFSNPRCHERG*SYLLHY
Trigger: ATAATGGAGAAGGTAGCTGCAACCCCTTTCATGGCA...TCGGGGATTGGAGAACAGGGGTGAGTACCGTATAGAGGCTGGACCACAGGGAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR CCA 90 bp GGTTCCCTGTGGTCCAGCCTCTATACGGTACTCACCCCTGTTCTCCAATCCCCGTCCAAAGCTATGTTCTaGCGTTCCACAGAATGGATA +
Preference number: 4 (lower is better)
Translates to: GSLWSSLYTVLTPVLQSPSKAMF*RSTEWI
Trigger: TATCCATTCTGTGGAACGCCAGAACATAGCTTTGGA...CGGGGATTGGAGAACAGGGGTGAGTACCGTATAGAGGCTGGACCACAGGGAACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR CCA 90 bp AGGTTCCCTGTGGTCCAGCCTCTATACGGTACTCACCCCTGTTCTCCAATCCCCCATCTGTACCATCTCTaGTTCCAGAAGCATCGACTT +
Preference number: 4 (lower is better)
Translates to: RFPVVQPLYGTHPCSPIPHLYHL*FQKHRL
Trigger: AAGTCGATGCTTCTGGAACCAGAGATGGTACAGATG...GGGGATTGGAGAACAGGGGTGAGTACCGTATAGAGGCTGGACCACAGGGAACCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR CCA 90 bp AGGTTCCCTGTGGTCCAGCCTCTATACGGTACTCACCCCTGTTCTCCAATCCCCGCAAACGAAAAGCTGTaGTTCTTCTCATTGCCAGAC +
Preference number: 4 (lower is better)
Translates to: RFPVVQPLYGTHPCSPIPANEKL*FFSLPD
Trigger: GTCTGGCAATGAGAAGAACCACAGCTTTTCGTTTGC...GGGGATTGGAGAACAGGGGTGAGTACCGTATAGAGGCTGGACCACAGGGAACCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR TCA 90 bp GTTCCCTGTGGTCCAGCCTCTATACGGTACTCACCCCTGTTCTCCAATCCCCGATCCCCTTGCGAGAAATaGACGAAATCACGTATGTTA +
Preference number: 4 (lower is better)
Translates to: VPCGPASIRYSPLFSNPRSPCEK*TKSRML
Trigger: TAACATACGTGATTTCGTTCATTTCTCGCAAGGGGA...TCGGGGATTGGAGAACAGGGGTGAGTACCGTATAGAGGCTGGACCACAGGGAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR GCA 90 bp GTTCCCTGTGGTCCAGCCTCTATACGGTACTCACCCCTGTTCTCCAATCCCCGAAGTGAAGAGAGAGTTTaGTCCATCTCCATAAGCCTT +
Preference number: 4 (lower is better)
Translates to: VPCGPASIRYSPLFSNPRSEERV*SISISL
Trigger: AAGGCTTATGGAGATGGAGCAAACTCTCTCTTCACT...TCGGGGATTGGAGAACAGGGGTGAGTACCGTATAGAGGCTGGACCACAGGGAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR GCA 90 bp AGGTTCCCTGTGGTCCAGCCTCTATACGGTACTCACCCCTGTTCTCCAATCCCCTCTCTTGGTGTTGCATaGAAACGAAAAGCTGTGGTT +
Preference number: 4 (lower is better)
Translates to: RFPVVQPLYGTHPCSPIPSLGVA*KRKAVV
Trigger: AACCACAGCTTTTCGTTTGCATGCAACACCAAGAGA...GGGGATTGGAGAACAGGGGTGAGTACCGTATAGAGGCTGGACCACAGGGAACCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR GCA 90 bp AGGTTCCCTGTGGTCCAGCCTCTATACGGTACTCACCCCTGTTCTCCAATCCCCTTCTTGGAAAGGCAATaGTTCTGCTTCCCTGCATAT +
Preference number: 4 (lower is better)
Translates to: RFPVVQPLYGTHPCSPIPFLERQ*FCFPAY
Trigger: ATATGCAGGGAAGCAGAAGCATTGCCTTTCCAAGAA...GGGGATTGGAGAACAGGGGTGAGTACCGTATAGAGGCTGGACCACAGGGAACCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR GCA 90 bp ACAAGGTTCCCTGTGGTCCAGCCTCTATACGGTACTCACCCCTGTTCTCCAATCCCTTTCAGTAACACCTaGCCAGCTGTGACTTTTGTG +
Preference number: 4 (lower is better)
Translates to: TRFPVVQPLYGTHPCSPIPFSNT*PAVTFV
Trigger: CACAAAAGTCACAGCTGGGCAGGTGTTACTGAAAGG...GATTGGAGAACAGGGGTGAGTACCGTATAGAGGCTGGACCACAGGGAACCTTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR CCA 90 bp GGTTCCCTGTGGTCCAGCCTCTATACGGTACTCACCCCTGTTCTCCAATCCCCGTCCTCCATCACTGAATaGTTTGTTGTGGTTTCTATG +
Preference number: 4 (lower is better)
Translates to: GSLWSSLYTVLTPVLQSPSSITE*FVVVSM
Trigger: CATAGAAACCACAACAAACCATTCAGTGATGGAGGA...CGGGGATTGGAGAACAGGGGTGAGTACCGTATAGAGGCTGGACCACAGGGAACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR CCA 90 bp TCCCTGTGGTCCAGCCTCTATACGGTACTCACCCCTGTTCTCCAATCCCCGAGGCACATAATAGGTGATTaGGGAGAAGGAAATGATGCA +
Preference number: 4 (lower is better)
Translates to: SLWSSLYTVLTPVLQSPRHIIGD*GEGNDA
Trigger: TGCATCATTTCCTTCTCCCCAATCACCTATTATGTG...CCTCGGGGATTGGAGAACAGGGGTGAGTACCGTATAGAGGCTGGACCACAGGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR CCA 90 bp GGTTCCCTGTGGTCCAGCCTCTATACGGTACTCACCCCTGTTCTCCAATCCCCGTCTTTCTCCACATCTTaGGGTGGAATTCCTCTTATT +
Preference number: 4 (lower is better)
Translates to: GSLWSSLYTVLTPVLQSPSFSTS*GGIPLI
Trigger: AATAAGAGGAATTCCACCCCAAGATGTGGAGAAAGA...CGGGGATTGGAGAACAGGGGTGAGTACCGTATAGAGGCTGGACCACAGGGAACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR TCA 90 bp CACCCCTGTTCTCCAATCCCCGAGGAACATCATAGTATTTATAATATAGGTACTCCACACCCGGTGCCTTaGAAAGGGATCCAGGCCAGC +
Preference number: 4 (lower is better)
Translates to: HPCSPIPEEHHSIYNIGTPHPVP*KGIQAS
Trigger: GCTGGCCTGGATCCCTTTTCAAGGCACCGGGTGTGG...AGTACCTATATTATAAATACTATGATGTTCCTCGGGGATTGGAGAACAGGGGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR TCA 90 bp ACAAGGTTCCCTGTGGTCCAGCCTCTATACGGTACTCACCCCTGTTCTCCAATCAGCTGCAAACTTAAGTaGTACCCAACTCCCCATTTC +
Preference number: 4 (lower is better)
Translates to: TRFPVVQPLYGTHPCSPISCKLK*YPTPHF
Trigger: GAAATGGGGAGTTGGGTATCACTTAAGTTTGCAGCT...GATTGGAGAACAGGGGTGAGTACCGTATAGAGGCTGGACCACAGGGAACCTTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR GCA 90 bp GAGAAGGCTAGACAAGGTTCCCTGTGGTCCAGCCTCTATACGGTACTCACCCCTTCTAGCAAAACCCTTTaGACCTCTTTCTCCACATCT +
Preference number: 4 (lower is better)
Translates to: EKARQGSLWSSLYTVLTPSSKTL*TSFSTS
Trigger: AGATGTGGAGAAAGAGGTGCAAAGGGTTTTGCTAGA...AGGGGTGAGTACCGTATAGAGGCTGGACCACAGGGAACCTTGTCTAGCCTTCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR GCA 90 bp GAGAAGGCTAGACAAGGTTCCCTGTGGTCCAGCCTCTATACGGTACTCACCCCTAGTGAAGAGAGAGTTTaGTCCATCTCCATAAGCCTT +
Preference number: 4 (lower is better)
Translates to: EKARQGSLWSSLYTVLTPSEERV*SISISL
Trigger: AAGGCTTATGGAGATGGAGCAAACTCTCTCTTCACT...AGGGGTGAGTACCGTATAGAGGCTGGACCACAGGGAACCTTGTCTAGCCTTCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR CCA 90 bp GAGAAGGCTAGACAAGGTTCCCTGTGGTCCAGCCTCTATACGGTACTCACCCCTTTGAACATTGGCTTGTaGACAAACTCCAGCAATCCT +
Preference number: 4 (lower is better)
Translates to: EKARQGSLWSSLYTVLTPLNIGL*TNSSNP
Trigger: AGGATTGCTGGAGTTTGTCCACAAGCCAATGTTCAA...AGGGGTGAGTACCGTATAGAGGCTGGACCACAGGGAACCTTGTCTAGCCTTCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR CCA 90 bp GAGAAGGCTAGACAAGGTTCCCTGTGGTCCAGCCTCTATACGGTACTCACCCCTCTCCACATCTTGGGGTaGAATTCCTCTTATTTTAGC +
Preference number: 4 (lower is better)
Translates to: EKARQGSLWSSLYTVLTPLHILG*NSSYFS
Trigger: GCTAAAATAAGAGGAATTCCACCCCAAGATGTGGAG...AGGGGTGAGTACCGTATAGAGGCTGGACCACAGGGAACCTTGTCTAGCCTTCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR CCA 90 bp ACAAGGTTCCCTGTGGTCCAGCCTCTATACGGTACTCACCCCTGTTCTCCAATCGCAAACGAAAAGCTGTaGTTCTTCTCATTGCCAGAC +
Preference number: 4 (lower is better)
Translates to: TRFPVVQPLYGTHPCSPIANEKL*FFSLPD
Trigger: GTCTGGCAATGAGAAGAACCACAGCTTTTCGTTTGC...GATTGGAGAACAGGGGTGAGTACCGTATAGAGGCTGGACCACAGGGAACCTTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR TCA 90 bp GAGAAGGCTAGACAAGGTTCCCTGTGGTCCAGCCTCTATACGGTACTCACCCCTGTAAGGAAGTCAAATTaGACATTGGCTTGTGGACAA +
Preference number: 4 (lower is better)
Translates to: EKARQGSLWSSLYTVLTPVRKSN*TLACGQ
Trigger: TTGTCCACAAGCCAATGTTCAATTTGACTTCCTTAC...AGGGGTGAGTACCGTATAGAGGCTGGACCACAGGGAACCTTGTCTAGCCTTCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR TCA 90 bp ACAAGGTTCCCTGTGGTCCAGCCTCTATACGGTACTCACCCCTGTTCTCCAATCTCCAGTAGGAAAATCTaGGAATCTCCTAAAATGGCG +
Preference number: 4 (lower is better)
Translates to: TRFPVVQPLYGTHPCSPISSRKI*ESPKMA
Trigger: CGCCATTTTAGGAGATTCTCAGATTTTCCTACTGGA...GATTGGAGAACAGGGGTGAGTACCGTATAGAGGCTGGACCACAGGGAACCTTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR CCA 90 bp ACAAGGTTCCCTGTGGTCCAGCCTCTATACGGTACTCACCCCTGTTCTCCAATCTGGCGTTCCACAGAATaGATAAAGTCGTCAATGCTT +
Preference number: 4 (lower is better)
Translates to: TRFPVVQPLYGTHPCSPIWRSTE*IKSSML
Trigger: AAGCATTGACGACTTTATCCATTCTGTGGAACGCCA...GATTGGAGAACAGGGGTGAGTACCGTATAGAGGCTGGACCACAGGGAACCTTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR CCA 90 bp GAGAAGGCTAGACAAGGTTCCCTGTGGTCCAGCCTCTATACGGTACTCACCCCTAGAAAACATGGTATCTaGGAAGCGAAAAAGGTAGTC +
Preference number: 4 (lower is better)
Translates to: EKARQGSLWSSLYTVLTPRKHGI*EAKKVV
Trigger: GACTACCTTTTTCGCTTCCCAGATACCATGTTTTCT...AGGGGTGAGTACCGTATAGAGGCTGGACCACAGGGAACCTTGTCTAGCCTTCTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
3UTR CAA 72 bp GTGATGGCTCCTGACATTCTGTGGGCTCATACCTATTaGGTGGATCCTCAAGGTTTCTTCTGGATTGAGCCT +
Preference number: 4 (lower is better)
Translates to: VMAPDILWAHTY*VDPQGFFWIEP
Trigger: AGGCTCAATCCAGAAGAAACCTTGAGGATCCACCAAATAGGTATGAGCCCACAGAATGTCAGGAGCCATCAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020948.15
CDS-3UTR TCA 90 bp TCTGTCCTCAGCTCAGTTCTGTCTCTTCTCTTTGTCCTCAGCACTTATACATCGGCATTGATGGCAGCTTaGAGAGCCACAAATCCTTCC +
Preference number: 4 (lower is better)
Translates to: SVLSSVLSLLFVLSTYTSALMAA*RATNPS
Trigger: GGAAGGATTTGTGGCTCTTCAAGCTGCCATCAATGC...CGATGTATAAGTGCTGAGGACAAAGAGAAGAGACAGAACTGAGCTGAGGACAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020948.15
CDS-3UTR TCA 90 bp ACAAGGTTCCCTGTGGTCCAGCCTCTATACGGTACTCACCCCTGTTCTCCAATCGATATAGAAGCTAAGTaGCCAAATGCCGCTGTTTTT +
Preference number: 4 (lower is better)
Translates to: TRFPVVQPLYGTHPCSPIDIEAK*PNAAVF
Trigger: AAAAACAGCGGCATTTGGTCACTTAGCTTCTATATC...GATTGGAGAACAGGGGTGAGTACCGTATAGAGGCTGGACCACAGGGAACCTTGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR GCA 90 bp CCTCCTGCTACTGATTTGTGTTTGGTGTTTGTGATTGCACTGGACAGCTGCTACTTGGCTGCAGGGATGTaGTGTTTAACAAGCGATGTG +
Preference number: 4 (lower is better)
Translates to: PPATDLCLVFVIALDSCYLAAGM*CLTSDV
Trigger: CACATCGCTTGTTAAACAGCACATCCCTGCAGCCAA...GTAGCAGCTGTCCAGTGCAATCACAAACACCAAACACAAATCAGTAGCAGGAGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020948.15
CDS-3UTR GCA 90 bp AGGTTCCCTGTGGTCCAGCCTCTATACGGTACTCACCCCTGTTCTCCAATCCCCAAAGTCGTCAATGCTTaGCTCTGTCTTATTAATGAT +
Preference number: 4 (lower is better)
Translates to: RFPVVQPLYGTHPCSPIPKVVNA*LCLIND
Trigger: ATCATTAATAAGACAGAGGCAAGCATTGACGACTTT...GGGGATTGGAGAACAGGGGTGAGTACCGTATAGAGGCTGGACCACAGGGAACCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR TCA 90 bp ACAAGGTTCCCTGTGGTCCAGCCTCTATACGGTACTCACCCCTGTTCTCCAATCTCTTGCAACATTGATTaGCACATAATAGGTGATTGG +
Preference number: 4 (lower is better)
Translates to: TRFPVVQPLYGTHPCSPISCNID*HIIGDW
Trigger: CCAATCACCTATTATGTGTCAATCAATGTTGCAAGA...GATTGGAGAACAGGGGTGAGTACCGTATAGAGGCTGGACCACAGGGAACCTTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR TCA 90 bp ACAAGGTTCCCTGTGGTCCAGCCTCTATACGGTACTCACCCCTGTTCTCCAATCCAATATTACAGCCACTaGGAACACAGTGATGATATA +
Preference number: 4 (lower is better)
Translates to: TRFPVVQPLYGTHPCSPIQYYSH*EHSDDI
Trigger: TATATCATCACTGTGTTCTCAGTGGCTGTAATATTG...GATTGGAGAACAGGGGTGAGTACCGTATAGAGGCTGGACCACAGGGAACCTTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR TCA 90 bp TCCCAAAGGTGTGCCTTTCTTTACTTCTATGCTCTTTTTGAGTTGAAATCTTTCATGGCGACTGCAGCGTaGCTTTTGCGCAAGCCCCTC +
Preference number: 4 (lower is better)
Translates to: SQRCAFLYFYALFELKSFMATAA*LLRKPL
Trigger: GAGGGGCTTGCGCAAAAGTCACGCTGCAGTCGCCAT...GAAAGATTTCAACTCAAAAAGAGCATAGAAGTAAAGAAAGGCACACCTTTGGGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000020948.15
CDS-3UTR TCA 90 bp TTATTCAACATTCTACAGAACTATGGCTATAAGTGTCCTAAAGGGATGTGGAGAATGGCGACTGCAGCGTaGCTTTTGCGCAAGCCCCTC +
Preference number: 4 (lower is better)
Translates to: LFNILQNYGYKCPKGMWRMATAA*LLRKPL
Trigger: GAGGGGCTTGCGCAAAAGTCACGCTGCAGTCGCCAT...TCTCCACATCCCTTTAGGACACTTATAGCCATAGTTCTGTAGAATGTTGAATAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR GCA 90 bp GGTTTCTTCTGGATTGAGCCTCCTGCTACTGATTTGTGTTTGGTGTTTGTGATTGGGTGTCCCCTTCTCTaGTCCCTTTCAGTAACACCT +
Preference number: 4 (lower is better)
Translates to: GFFWIEPPATDLCLVFVIGCPLL*SLSVTP
Trigger: AGGTGTTACTGAAAGGGAGCAGAGAAGGGGACACCC...AATCACAAACACCAAACACAAATCAGTAGCAGGAGGCTCAATCCAGAAGAAACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020948.15
CDS-3UTR GCA 90 bp CACCCCTGTTCTCCAATCCCCGAGGAACATCATAGTATTTATAATATAGGTACTGCGCAAGCCCCTCACTaGAGCAAATATCTCCAGGTG +
Preference number: 4 (lower is better)
Translates to: HPCSPIPEEHHSIYNIGTAQAPH*SKYLQV
Trigger: CACCTGGAGATATTTGCTGCAGTGAGGGGCTTGCGC...AGTACCTATATTATAAATACTATGATGTTCCTCGGGGATTGGAGAACAGGGGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR GCA 90 bp GGTACTCACCCCTGTTCTCCAATCCCCGAGGAACATCATAGTATTTATAATATAGCTTGCCATATTTGCTaGTGCCCCTCAGGATCCAGC +
Preference number: 4 (lower is better)
Translates to: GTHPCSPIPEEHHSIYNIACHIC*CPSGSS
Trigger: GCTGGATCCTGAGGGGCAGCAGCAAATATGGCAAGC...TATATTATAAATACTATGATGTTCCTCGGGGATTGGAGAACAGGGGTGAGTACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR GCA 90 bp TGTCTCTTCTCTTTGTCCTCAGCACTTATACATCGTTCAGAATACATGATCACATTGAGGGGCTCCACCTaGTCGAGGGTCTTCACCTTC +
Preference number: 4 (lower is better)
Translates to: CLFSLSSALIHRSEYMITLRGST*SRVFTF
Trigger: GAAGGTGAAGACCCTCGAGCAGGTGGAGCCCCTCAA...TGTGATCATGTATTCTGAACGATGTATAAGTGCTGAGGACAAAGAGAAGAGACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020948.15
CDS-3UTR CCA 90 bp GAGAAGGCTAGACAAGGTTCCCTGTGGTCCAGCCTCTATACGGTACTCACCCCTCACATCATTGTTTCTTaGAGAAATTCTAAAGATGGG +
Preference number: 4 (lower is better)
Translates to: EKARQGSLWSSLYTVLTPHIIVS*RNSKDG
Trigger: CCCATCTTTAGAATTTCTCCAAGAAACAATGATGTG...AGGGGTGAGTACCGTATAGAGGCTGGACCACAGGGAACCTTGTCTAGCCTTCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR CCA 90 bp CCTCCTGCTACTGATTTGTGTTTGGTGTTTGTGATTGCACTGGACAGCTGCTACTTAAGCCTCTTCCTGTaGGAGGAGCTTCCACTTTAT +
Preference number: 4 (lower is better)
Translates to: PPATDLCLVFVIALDSCYLSLFL*EELPLY
Trigger: ATAAAGTGGAAGCTCCTCCCACAGGAAGAGGCTTAA...GTAGCAGCTGTCCAGTGCAATCACAAACACCAAACACAAATCAGTAGCAGGAGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020948.15
3UTR CAA 72 bp CAAGGTTTCTTCTGGATTGAGCCTCCTGCTACTGATTaGTGTTTGGTGTTTGTGATTGCACTGGACAGCTGC +
Preference number: 4 (lower is better)
Translates to: QGFFWIEPPATD*CLVFVIALDSC
Trigger: GCAGCTGTCCAGTGCAATCACAAACACCAAACACAAATCAGTAGCAGGAGGCTCAATCCAGAAGAAACCTTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020948.15
3UTR CAA 72 bp GACACGTGGGAGACTGGCAGAGTTCTCATTGCAGTTTaGACTATCAGAAAAGGACCTAATAGCAGTCCCACT +
Preference number: 4 (lower is better)
Translates to: DTWETGRVLIAV*TIRKGPNSSPT
Trigger: AGTGGGACTGCTATTAGGTCCTTTTCTGATAGTCAAAACTGCAATGAGAACTCTGCCAGTCTCCCACGTGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020948.15
CDS-3UTR TCA 90 bp ACGTGGGAGACTGGCAGAGTTCTCATTGCAGTTTTGACTATCAGAAAAGGACCTCTCTGTTTCCCTAAGTaGAGAGAGAGTTTGCTCCAT +
Preference number: 4 (lower is better)
Translates to: TWETGRVLIAVLTIRKGPLCFPK*RESLLH
Trigger: ATGGAGCAAACTCTCTCTTCACTTAGGGAAACAGAG...AGGTCCTTTTCTGATAGTCAAAACTGCAATGAGAACTCTGCCAGTCTCCCACGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020948.15
CDS-3UTR TCA 90 bp ACGTGGGAGACTGGCAGAGTTCTCATTGCAGTTTTGACTATCAGAAAAGGACCTGAATCTCACCTTTCCTaGCACAAAACGAGACATTCC +
Preference number: 4 (lower is better)
Translates to: TWETGRVLIAVLTIRKGPESHLS*HKTRHS
Trigger: GGAATGTCTCGTTTTGTGTCAGGAAAGGTGAGATTC...AGGTCCTTTTCTGATAGTCAAAACTGCAATGAGAACTCTGCCAGTCTCCCACGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000020948.15
CDS-3UTR GCA 90 bp TTTATACATTTCCATTCAAACCAGTTGGGCTTAGTTTGCATACATTCTCACAACGAGGACCACACGGTCTaGTCTGCGCTCCTTCAGGAG +
Preference number: 4 (lower is better)
Translates to: FIHFHSNQLGLVCIHSHNEDHTV*SALLQE
Trigger: CTCCTGAAGGAGCGCAGAGCAGACCGTGTGGTCCTC...GTTGTGAGAATGTATGCAAACTAAGCCCAACTGGTTTGAATGGAAATGTATAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020948.15
CDS-3UTR GCA 90 bp TGTCTCTTCTCTTTGTCCTCAGCACTTATACATCGTTCAGAATACATGATCACATTGCTGCCTCCAGAGTaGCATGCCGTCTGTCTTCTC +
Preference number: 4 (lower is better)
Translates to: CLFSLSSALIHRSEYMITLLPPE*HAVCLL
Trigger: GAGAAGACAGACGGCATGGCACTCTGGAGGCAGCAA...TGTGATCATGTATTCTGAACGATGTATAAGTGCTGAGGACAAAGAGAAGAGACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020948.15
CDS-3UTR GCA 90 bp CCTCCTGCTACTGATTTGTGTTTGGTGTTTGTGATTGCACTGGACAGCTGCTACGAAAGGCAATGCTTCTaGTTCCCTGCATATTCTTTG +
Preference number: 4 (lower is better)
Translates to: PPATDLCLVFVIALDSCYERQCF*FPAYSL
Trigger: CAAAGAATATGCAGGGAAGCAGAAGCATTGCCTTTC...GTAGCAGCTGTCCAGTGCAATCACAAACACCAAACACAAATCAGTAGCAGGAGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020948.15
CDS-3UTR CCA 90 bp ACAAGGTTCCCTGTGGTCCAGCCTCTATACGGTACTCACCCCTGTTCTCCAATCAACTGGAATTTCAGATaGTATGAGAATGTGTCAGAA +
Preference number: 4 (lower is better)
Translates to: TRFPVVQPLYGTHPCSPINWNFR*YENVSE
Trigger: TTCTGACACATTCTCATACCATCTGAAATTCCAGTT...GATTGGAGAACAGGGGTGAGTACCGTATAGAGGCTGGACCACAGGGAACCTTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR TCA 90 bp GGTACTCACCCCTGTTCTCCAATCCCCGAGGAACATCATAGTATTTATAATATAAGGTCAGTAGCTCCATaGCCATGGGGATACCAATAC +
Preference number: 4 (lower is better)
Translates to: GTHPCSPIPEEHHSIYNIRSVAP*PWGYQY
Trigger: GTATTGGTATCCCCATGGTCATGGAGCTACTGACCT...TATATTATAAATACTATGATGTTCCTCGGGGATTGGAGAACAGGGGTGAGTACC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR TCA 90 bp ACGTGGGAGACTGGCAGAGTTCTCATTGCAGTTTTGACTATCAGAAAAGGACCTGACGTTGGGATTCTCTaGTCAAACTGGAATTTCAGA +
Preference number: 4 (lower is better)
Translates to: TWETGRVLIAVLTIRKGPDVGIL*SNWNFR
Trigger: TCTGAAATTCCAGTTTGATCAGAGAATCCCAACGTC...AGGTCCTTTTCTGATAGTCAAAACTGCAATGAGAACTCTGCCAGTCTCCCACGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020948.15
CDS-3UTR TCA 90 bp TCTGTCCTCAGCTCAGTTCTGTCTCTTCTCTTTGTCCTCAGCACTTATACATCGTACAGTCCATCACAATaGGCATTATGGTCTCTGAGT +
Preference number: 4 (lower is better)
Translates to: SVLSSVLSLLFVLSTYTSYSPSQ*ALWSLS
Trigger: ACTCAGAGACCATAATGCTCATTGTGATGGACTGTA...CGATGTATAAGTGCTGAGGACAAAGAGAAGAGACAGAACTGAGCTGAGGACAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020948.15
CDS-3UTR TCA 90 bp CCCTGTTCTCCAATCCCCGAGGAACATCATAGTATTTATAATATAGGTACTAAAACACAGACAGGCCAGTaGGGACAGACTTCCTCACCA +
Preference number: 4 (lower is better)
Translates to: PCSPIPEEHHSIYNIGTKTQTGQ*GQTSSP
Trigger: TGGTGAGGAAGTCTGTCCTCACTGGCCTGTCTGTGT...TTTAGTACCTATATTATAAATACTATGATGTTCCTCGGGGATTGGAGAACAGGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020948.15
CDS-3UTR GCA 90 bp CCCTGTTCTCCAATCCCCGAGGAACATCATAGTATTTATAATATAGGTACTAAAGCTTGCCATATTTGCTaGTGCCCCTCAGGATCCAGC +
Preference number: 4 (lower is better)
Translates to: PCSPIPEEHHSIYNIGTKACHIC*CPSGSS
Trigger: GCTGGATCCTGAGGGGCAGCAGCAAATATGGCAAGC...TTTAGTACCTATATTATAAATACTATGATGTTCCTCGGGGATTGGAGAACAGGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR GCA 90 bp GGTACTCACCCCTGTTCTCCAATCCCCGAGGAACATCATAGTATTTATAATATAATTGCTTGCCATATTTaGTGCTGCCCCTCAGGATCC +
Preference number: 4 (lower is better)
Translates to: GTHPCSPIPEEHHSIYNIIACHI*CCPSGS
Trigger: GGATCCTGAGGGGCAGCAGCAAATATGGCAAGCAAT...TATATTATAAATACTATGATGTTCCTCGGGGATTGGAGAACAGGGGTGAGTACC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR TCA 90 bp TCTGTCCTCAGCTCAGTTCTGTCTCTTCTCTTTGTCCTCAGCACTTATACATCGAAGGATGGATCTTCATaGATTTCCCTGACACTGATA +
Preference number: 4 (lower is better)
Translates to: SVLSSVLSLLFVLSTYTSKDGSS*ISLTLI
Trigger: TATCAGTGTCAGGGAAATTCATGAAGATCCATCCTT...CGATGTATAAGTGCTGAGGACAAAGAGAAGAGACAGAACTGAGCTGAGGACAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020948.15
CDS-3UTR TCA 90 bp CACCCCTGTTCTCCAATCCCCGAGGAACATCATAGTATTTATAATATAGGTACTTTAATGATCAATAACTaGGTGAGCATGCCCTGGGGC +
Preference number: 4 (lower is better)
Translates to: HPCSPIPEEHHSIYNIGTLMINN*VSMPWG
Trigger: GCCCCAGGGCATGCTCACTCAGTTATTGATCATTAA...AGTACCTATATTATAAATACTATGATGTTCCTCGGGGATTGGAGAACAGGGGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR GCA 90 bp CATTCATGCTTACATATGCATTTGGAGCAAAAGACTAAACAGCAGTGCAGAAAGAGTCCATTCCACAGGTaGAGGGAGGTATCTGTACAG +
Preference number: 4 (lower is better)
Translates to: HSCLHMHLEQKTKQQCRKSPFHR*REVSVQ
Trigger: CTGTACAGATACCTCCCTGCACCTGTGGAATGGACT...CTTTCTGCACTGCTGTTTAGTCTTTTGCTCCAAATGCATATGTAAGCATGAATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020948.15
CDS-3UTR GCA 90 bp GGTACTCACCCCTGTTCTCCAATCCCCGAGGAACATCATAGTATTTATAATATATTCCAAGTAGCCCGTTaGTCAGGATGTCCATCAGAA +
Preference number: 4 (lower is better)
Translates to: GTHPCSPIPEEHHSIYNIFQVAR*SGCPSE
Trigger: TTCTGATGGACATCCTGAGCAACGGGCTACTTGGAA...TATATTATAAATACTATGATGTTCCTCGGGGATTGGAGAACAGGGGTGAGTACC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR GCA 90 bp TTATTCAACATTCTACAGAACTATGGCTATAAGTGTCCTAAAGGGATGTGGAGAATGGCCCTGATTGCTTaGCATATTTGCTGCTGCCCC +
Preference number: 4 (lower is better)
Translates to: LFNILQNYGYKCPKGMWRMALIA*HICCCP
Trigger: GGGGCAGCAGCAAATATGGCAAGCAATCAGGGCCAT...TCTCCACATCCCTTTAGGACACTTATAGCCATAGTTCTGTAGAATGTTGAATAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR CCA 90 bp CAATTAACTGGTGACACGTGGGAGACTGGCAGAGTTCTCATTGCAGTTTTGACTTCCTCCATCACTGAATaGTTTGTTGTGGTTTCTATG +
Preference number: 4 (lower is better)
Translates to: QLTGDTWETGRVLIAVLTSSITE*FVVVSM
Trigger: CATAGAAACCACAACAAACCATTCAGTGATGGAGGA...AGTCAAAACTGCAATGAGAACTCTGCCAGTCTCCCACGTGTCACCAGTTAATTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020948.15
CDS-3UTR CCA 90 bp CAATTAACTGGTGACACGTGGGAGACTGGCAGAGTTCTCATTGCAGTTTTGACTCGATGTGATGTTTTCTaGAACACAGACTTCTTTCAG +
Preference number: 4 (lower is better)
Translates to: QLTGDTWETGRVLIAVLTRCDVF*NTDFFQ
Trigger: CTGAAAGAAGTCTGTGTTCCAGAAAACATCACATCG...AGTCAAAACTGCAATGAGAACTCTGCCAGTCTCCCACGTGTCACCAGTTAATTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020948.15
3UTR CAA 72 bp ATACCTATTTGGTGGATCCTCAAGGTTTCTTCTGGATaGAGCCTCCTGCTACTGATTTGTGTTTGGTGTTTG +
Preference number: 4 (lower is better)
Translates to: IPIWWILKVSSG*SLLLLICVWCL
Trigger: CAAACACCAAACACAAATCAGTAGCAGGAGGCTCAATCCAGAAGAAACCTTGAGGATCCACCAAATAGGTAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020948.15
CDS-3UTR TCA 90 bp TCCCAAAGGTGTGCCTTTCTTTACTTCTATGCTCTTTTTGAGTTGAAATCTTTCAGGTCAGTAGCTCCATaGCCATGGGGATACCAATAC +
Preference number: 4 (lower is better)
Translates to: SQRCAFLYFYALFELKSFRSVAP*PWGYQY
Trigger: GTATTGGTATCCCCATGGTCATGGAGCTACTGACCT...GAAAGATTTCAACTCAAAAAGAGCATAGAAGTAAAGAAAGGCACACCTTTGGGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000020948.15
CDS-3UTR TCA 90 bp TCTGTCCTCAGCTCAGTTCTGTCTCTTCTCTTTGTCCTCAGCACTTATACATCGTCTTGCAACATTGATTaGCACATAATAGGTGATTGG +
Preference number: 4 (lower is better)
Translates to: SVLSSVLSLLFVLSTYTSSCNID*HIIGDW
Trigger: CCAATCACCTATTATGTGTCAATCAATGTTGCAAGA...CGATGTATAAGTGCTGAGGACAAAGAGAAGAGACAGAACTGAGCTGAGGACAGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020948.15
CDS-3UTR GCA 90 bp TTATTCAACATTCTACAGAACTATGGCTATAAGTGTCCTAAAGGGATGTGGAGAATTGCTTGCCATATTTaGTGCTGCCCCTCAGGATCC +
Preference number: 4 (lower is better)
Translates to: LFNILQNYGYKCPKGMWRIACHI*CCPSGS
Trigger: GGATCCTGAGGGGCAGCAGCAAATATGGCAAGCAAT...TCTCCACATCCCTTTAGGACACTTATAGCCATAGTTCTGTAGAATGTTGAATAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR GCA 90 bp GTAACTGTTTATTCAACATTCTACAGAACTATGGCTATAAGTGTCCTAAAGGGAATGGCCCTGATTGCTTaGCATATTTGCTGCTGCCCC +
Preference number: 4 (lower is better)
Translates to: VTVYSTFYRTMAISVLKGMALIA*HICCCP
Trigger: GGGGCAGCAGCAAATATGGCAAGCAATCAGGGCCAT...TCCCTTTAGGACACTTATAGCCATAGTTCTGTAGAATGTTGAATAAACAGTTAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR CCA 90 bp TCCCAAAGGTGTGCCTTTCTTTACTTCTATGCTCTTTTTGAGTTGAAATCTTTCTTTCCCGTGGAATTCTaGGGACACCGGTTCAAACGA +
Preference number: 4 (lower is better)
Translates to: SQRCAFLYFYALFELKSFFPVEF*GHRFKR
Trigger: TCGTTTGAACCGGTGTCCCCAGAATTCCACGGGAAA...GAAAGATTTCAACTCAAAAAGAGCATAGAAGTAAAGAAAGGCACACCTTTGGGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020948.15
CDS-3UTR CCA 90 bp GGTACTCACCCCTGTTCTCCAATCCCCGAGGAACATCATAGTATTTATAATATACATCTGTACCATCTCTaGTTCCAGAAGCATCGACTT +
Preference number: 4 (lower is better)
Translates to: GTHPCSPIPEEHHSIYNIHLYHL*FQKHRL
Trigger: AAGTCGATGCTTCTGGAACCAGAGATGGTACAGATG...TATATTATAAATACTATGATGTTCCTCGGGGATTGGAGAACAGGGGTGAGTACC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR TCA 90 bp CACCCCTGTTCTCCAATCCCCGAGGAACATCATAGTATTTATAATATAGGTACTGACGTTGGGATTCTCTaGTCAAACTGGAATTTCAGA +
Preference number: 4 (lower is better)
Translates to: HPCSPIPEEHHSIYNIGTDVGIL*SNWNFR
Trigger: TCTGAAATTCCAGTTTGATCAGAGAATCCCAACGTC...AGTACCTATATTATAAATACTATGATGTTCCTCGGGGATTGGAGAACAGGGGTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR TCA 90 bp TTATTCAACATTCTACAGAACTATGGCTATAAGTGTCCTAAAGGGATGTGGAGATGCTATAATCAGATTTaGGCCACTGGCTGGATCAGG +
Preference number: 4 (lower is better)
Translates to: LFNILQNYGYKCPKGMWRCYNQI*ATGWIR
Trigger: CCTGATCCAGCCAGTGGCTCAAATCTGATTATAGCA...TCTCCACATCCCTTTAGGACACTTATAGCCATAGTTCTGTAGAATGTTGAATAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR TCA 90 bp TGTTTATTCAACATTCTACAGAACTATGGCTATAAGTGTCCTAAAGGGATGTGGTGCTATAATCAGATTTaGGCCACTGGCTGGATCAGG +
Preference number: 4 (lower is better)
Translates to: CLFNILQNYGYKCPKGMWCYNQI*ATGWIR
Trigger: CCTGATCCAGCCAGTGGCTCAAATCTGATTATAGCA...CCACATCCCTTTAGGACACTTATAGCCATAGTTCTGTAGAATGTTGAATAAACA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR CCA 90 bp ACGTGGGAGACTGGCAGAGTTCTCATTGCAGTTTTGACTATCAGAAAAGGACCTAACTGGAATTTCAGATaGTATGAGAATGTGTCAGAA +
Preference number: 4 (lower is better)
Translates to: TWETGRVLIAVLTIRKGPNWNFR*YENVSE
Trigger: TTCTGACACATTCTCATACCATCTGAAATTCCAGTT...AGGTCCTTTTCTGATAGTCAAAACTGCAATGAGAACTCTGCCAGTCTCCCACGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020948.15
CDS-3UTR CCA 90 bp GGTTTCTTCTGGATTGAGCCTCCTGCTACTGATTTGTGTTTGGTGTTTGTGATTCACATAATAGGTGATTaGGGAGAAGGAAATGATGCA +
Preference number: 4 (lower is better)
Translates to: GFFWIEPPATDLCLVFVIHIIGD*GEGNDA
Trigger: TGCATCATTTCCTTCTCCCCAATCACCTATTATGTG...AATCACAAACACCAAACACAAATCAGTAGCAGGAGGCTCAATCCAGAAGAAACC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020948.15
CDS-3UTR CCA 90 bp GGTACTCACCCCTGTTCTCCAATCCCCGAGGAACATCATAGTATTTATAATATATCCAAAGCTATGTTCTaGCGTTCCACAGAATGGATA +
Preference number: 4 (lower is better)
Translates to: GTHPCSPIPEEHHSIYNISKAMF*RSTEWI
Trigger: TATCCATTCTGTGGAACGCCAGAACATAGCTTTGGA...TATATTATAAATACTATGATGTTCCTCGGGGATTGGAGAACAGGGGTGAGTACC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR CCA 90 bp CATTCATGCTTACATATGCATTTGGAGCAAAAGACTAAACAGCAGTGCAGAAAGGCTGGCAATGATGACTaGCTTCTCATCAAAACTGGT +
Preference number: 4 (lower is better)
Translates to: HSCLHMHLEQKTKQQCRKAGNDD*LLIKTG
Trigger: ACCAGTTTTGATGAGAAGCCAGTCATCATTGCCAGC...CTTTCTGCACTGCTGTTTAGTCTTTTGCTCCAAATGCATATGTAAGCATGAATG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020948.15
CDS-3UTR CCA 90 bp GGTTTCTTCTGGATTGAGCCTCCTGCTACTGATTTGTGTTTGGTGTTTGTGATTGGAGCTTCCACTTTATaGAGGAGTCTAATTCTTCTA +
Preference number: 4 (lower is better)
Translates to: GFFWIEPPATDLCLVFVIGASTL*RSLILL
Trigger: TAGAAGAATTAGACTCCTCCATAAAGTGGAAGCTCC...AATCACAAACACCAAACACAAATCAGTAGCAGGAGGCTCAATCCAGAAGAAACC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020948.15
CDS-3UTR TCA 90 bp GGTACTCACCCCTGTTCTCCAATCCCCGAGGAACATCATAGTATTTATAATATAAAGGATGGATCTTCATaGATTTCCCTGACACTGATA +
Preference number: 4 (lower is better)
Translates to: GTHPCSPIPEEHHSIYNIKDGSS*ISLTLI
Trigger: TATCAGTGTCAGGGAAATTCATGAAGATCCATCCTT...TATATTATAAATACTATGATGTTCCTCGGGGATTGGAGAACAGGGGTGAGTACC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR TCA 90 bp TTTATACATTTCCATTCAAACCAGTTGGGCTTAGTTTGCATACATTCTCACAACTTAATGATCAATAACTaGGTGAGCATGCCCTGGGGC +
Preference number: 4 (lower is better)
Translates to: FIHFHSNQLGLVCIHSHNLMINN*VSMPWG
Trigger: GCCCCAGGGCATGCTCACTCAGTTATTGATCATTAA...GTTGTGAGAATGTATGCAAACTAAGCCCAACTGGTTTGAATGGAAATGTATAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020948.15
CDS-3UTR TCA 90 bp GGTACTCACCCCTGTTCTCCAATCCCCGAGGAACATCATAGTATTTATAATATAGGCTCTTCTGGGTTTTaGTACACATCATTGTTTCTT +
Preference number: 4 (lower is better)
Translates to: GTHPCSPIPEEHHSIYNIGSSGF*YTSLFL
Trigger: AAGAAACAATGATGTGTATCAAAACCCAGAAGAGCC...TATATTATAAATACTATGATGTTCCTCGGGGATTGGAGAACAGGGGTGAGTACC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR GCA 90 bp CCCTGTTCTCCAATCCCCGAGGAACATCATAGTATTTATAATATAGGTACTAAATGCCATGAAAGGGGTTaGAGCTACCTTCTCCATTAT +
Preference number: 4 (lower is better)
Translates to: PCSPIPEEHHSIYNIGTKCHERG*SYLLHY
Trigger: ATAATGGAGAAGGTAGCTGCAACCCCTTTCATGGCA...TTTAGTACCTATATTATAAATACTATGATGTTCCTCGGGGATTGGAGAACAGGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR GCA 90 bp CATTCATGCTTACATATGCATTTGGAGCAAAAGACTAAACAGCAGTGCAGAAAGACTGTGACCAAGTACTaGTGTGATTTGGCCTTCATA +
Preference number: 4 (lower is better)
Translates to: HSCLHMHLEQKTKQQCRKTVTKY*CDLAFI
Trigger: TATGAAGGCCAAATCACAGCAGTACTTGGTCACAGT...CTTTCTGCACTGCTGTTTAGTCTTTTGCTCCAAATGCATATGTAAGCATGAATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020948.15
CDS-3UTR GCA 90 bp TGTCTCTTCTCTTTGTCCTCAGCACTTATACATCGTTCAGAATACATGATCACATCTCTTGGTGTTGCATaGAAACGAAAAGCTGTGGTT +
Preference number: 4 (lower is better)
Translates to: CLFSLSSALIHRSEYMITSLGVA*KRKAVV
Trigger: AACCACAGCTTTTCGTTTGCATGCAACACCAAGAGA...TGTGATCATGTATTCTGAACGATGTATAAGTGCTGAGGACAAAGAGAAGAGACA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020948.15
CDS-3UTR CCA 90 bp CACCCCTGTTCTCCAATCCCCGAGGAACATCATAGTATTTATAATATAGGTACTGGAGCTTCCACTTTATaGAGGAGTCTAATTCTTCTA +
Preference number: 4 (lower is better)
Translates to: HPCSPIPEEHHSIYNIGTGASTL*RSLILL
Trigger: TAGAAGAATTAGACTCCTCCATAAAGTGGAAGCTCC...AGTACCTATATTATAAATACTATGATGTTCCTCGGGGATTGGAGAACAGGGGTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR TCA 90 bp TCCCAAAGGTGTGCCTTTCTTTACTTCTATGCTCTTTTTGAGTTGAAATCTTTCTCTTCAAGAATCACATaGGCAGGCTTTCGTGTTTGT +
Preference number: 4 (lower is better)
Translates to: SQRCAFLYFYALFELKSFSSRIT*AGFRVC
Trigger: ACAAACACGAAAGCCTGCTCATGTGATTCTTGAAGA...GAAAGATTTCAACTCAAAAAGAGCATAGAAGTAAAGAAAGGCACACCTTTGGGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020948.15
CDS-3UTR TCA 90 bp TTATTCAACATTCTACAGAACTATGGCTATAAGTGTCCTAAAGGGATGTGGAGATCTTCAAGAATCACATaGGCAGGCTTTCGTGTTTGT +
Preference number: 4 (lower is better)
Translates to: LFNILQNYGYKCPKGMWRSSRIT*AGFRVC
Trigger: ACAAACACGAAAGCCTGCTCATGTGATTCTTGAAGA...TCTCCACATCCCTTTAGGACACTTATAGCCATAGTTCTGTAGAATGTTGAATAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR TCA 90 bp CATTCATGCTTACATATGCATTTGGAGCAAAAGACTAAACAGCAGTGCAGAAAGGTAAGGAAGTCAAATTaGACATTGGCTTGTGGACAA +
Preference number: 4 (lower is better)
Translates to: HSCLHMHLEQKTKQQCRKVRKSN*TLACGQ
Trigger: TTGTCCACAAGCCAATGTTCAATTTGACTTCCTTAC...CTTTCTGCACTGCTGTTTAGTCTTTTGCTCCAAATGCATATGTAAGCATGAATG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020948.15
CDS-3UTR TCA 90 bp TGTTTATTCAACATTCTACAGAACTATGGCTATAAGTGTCCTAAAGGGATGTGGTCCAGTAGGAAAATCTaGGAATCTCCTAAAATGGCG +
Preference number: 4 (lower is better)
Translates to: CLFNILQNYGYKCPKGMWSSRKI*ESPKMA
Trigger: CGCCATTTTAGGAGATTCTCAGATTTTCCTACTGGA...CCACATCCCTTTAGGACACTTATAGCCATAGTTCTGTAGAATGTTGAATAAACA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR TCA 90 bp GGTACTCACCCCTGTTCTCCAATCCCCGAGGAACATCATAGTATTTATAATATATGTTCTTATAATCTGTaGCACTGCTCATGGCAATAT +
Preference number: 4 (lower is better)
Translates to: GTHPCSPIPEEHHSIYNICSYNL*HCSWQY
Trigger: ATATTGCCATGAGCAGTGTCACAGATTATAAGAACA...TATATTATAAATACTATGATGTTCCTCGGGGATTGGAGAACAGGGGTGAGTACC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR TCA 90 bp TTATTCAACATTCTACAGAACTATGGCTATAAGTGTCCTAAAGGGATGTGGAGATCCCCTTGCGAGAAATaGACGAAATCACGTATGTTA +
Preference number: 4 (lower is better)
Translates to: LFNILQNYGYKCPKGMWRSPCEK*TKSRML
Trigger: TAACATACGTGATTTCGTTCATTTCTCGCAAGGGGA...TCTCCACATCCCTTTAGGACACTTATAGCCATAGTTCTGTAGAATGTTGAATAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR TCA 90 bp GGTACTCACCCCTGTTCTCCAATCCCCGAGGAACATCATAGTATTTATAATATAGTGGTATCAAAAAGATaGTGTAGTACTGTGTACCAT +
Preference number: 4 (lower is better)
Translates to: GTHPCSPIPEEHHSIYNIVVSKR*CSTVYH
Trigger: ATGGTACACAGTACTACATCATCTTTTTGATACCAC...TATATTATAAATACTATGATGTTCCTCGGGGATTGGAGAACAGGGGTGAGTACC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR GCA 90 bp TGTTTATTCAACATTCTACAGAACTATGGCTATAAGTGTCCTAAAGGGATGTGGACTGTGACCAAGTACTaGTGTGATTTGGCCTTCATA +
Preference number: 4 (lower is better)
Translates to: CLFNILQNYGYKCPKGMWTVTKY*CDLAFI
Trigger: TATGAAGGCCAAATCACAGCAGTACTTGGTCACAGT...CCACATCCCTTTAGGACACTTATAGCCATAGTTCTGTAGAATGTTGAATAAACA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR GCA 90 bp TTATTCAACATTCTACAGAACTATGGCTATAAGTGTCCTAAAGGGATGTGGAGATCTAGCAAAACCCTTTaGACCTCTTTCTCCACATCT +
Preference number: 4 (lower is better)
Translates to: LFNILQNYGYKCPKGMWRSSKTL*TSFSTS
Trigger: AGATGTGGAGAAAGAGGTGCAAAGGGTTTTGCTAGA...TCTCCACATCCCTTTAGGACACTTATAGCCATAGTTCTGTAGAATGTTGAATAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR GCA 90 bp CCCTGTTCTCCAATCCCCGAGGAACATCATAGTATTTATAATATAGGTACTAAAGAAAGGCAATGCTTCTaGTTCCCTGCATATTCTTTG +
Preference number: 4 (lower is better)
Translates to: PCSPIPEEHHSIYNIGTKERQCF*FPAYSL
Trigger: CAAAGAATATGCAGGGAAGCAGAAGCATTGCCTTTC...TTTAGTACCTATATTATAAATACTATGATGTTCCTCGGGGATTGGAGAACAGGG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR GCA 90 bp TGTTTATTCAACATTCTACAGAACTATGGCTATAAGTGTCCTAAAGGGATGTGGTTCTTGGAAAGGCAATaGTTCTGCTTCCCTGCATAT +
Preference number: 4 (lower is better)
Translates to: CLFNILQNYGYKCPKGMWFLERQ*FCFPAY
Trigger: ATATGCAGGGAAGCAGAAGCATTGCCTTTCCAAGAA...CCACATCCCTTTAGGACACTTATAGCCATAGTTCTGTAGAATGTTGAATAAACA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR CCA 90 bp TCCCAAAGGTGTGCCTTTCTTTACTTCTATGCTCTTTTTGAGTTGAAATCTTTCTTGAACATTGGCTTGTaGACAAACTCCAGCAATCCT +
Preference number: 4 (lower is better)
Translates to: SQRCAFLYFYALFELKSFLNIGL*TNSSNP
Trigger: AGGATTGCTGGAGTTTGTCCACAAGCCAATGTTCAA...GAAAGATTTCAACTCAAAAAGAGCATAGAAGTAAAGAAAGGCACACCTTTGGGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020948.15
CDS-3UTR CCA 90 bp TTATTCAACATTCTACAGAACTATGGCTATAAGTGTCCTAAAGGGATGTGGAGACTCCACATCTTGGGGTaGAATTCCTCTTATTTTAGC +
Preference number: 4 (lower is better)
Translates to: LFNILQNYGYKCPKGMWRLHILG*NSSYFS
Trigger: GCTAAAATAAGAGGAATTCCACCCCAAGATGTGGAG...TCTCCACATCCCTTTAGGACACTTATAGCCATAGTTCTGTAGAATGTTGAATAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR CCA 90 bp TTATTCAACATTCTACAGAACTATGGCTATAAGTGTCCTAAAGGGATGTGGAGATGGCGTTCCACAGAATaGATAAAGTCGTCAATGCTT +
Preference number: 4 (lower is better)
Translates to: LFNILQNYGYKCPKGMWRWRSTE*IKSSML
Trigger: AAGCATTGACGACTTTATCCATTCTGTGGAACGCCA...TCTCCACATCCCTTTAGGACACTTATAGCCATAGTTCTGTAGAATGTTGAATAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR CCA 90 bp GTAACTGTTTATTCAACATTCTACAGAACTATGGCTATAAGTGTCCTAAAGGGAGCTGGCAATGATGACTaGCTTCTCATCAAAACTGGT +
Preference number: 4 (lower is better)
Translates to: VTVYSTFYRTMAISVLKGAGNDD*LLIKTG
Trigger: ACCAGTTTTGATGAGAAGCCAGTCATCATTGCCAGC...TCCCTTTAGGACACTTATAGCCATAGTTCTGTAGAATGTTGAATAAACAGTTAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
3UTR CAA 72 bp GAGAGCTTGGTTCCTTTTAATAAGACTAAGCCTGGCTaGTTATTAAGAAAAGACCTGTTCTGTCCCATGATA +
Preference number: 4 (lower is better)
Translates to: ESLVPFNKTKPG*LLRKDLFCPMI
Trigger: TATCATGGGACAGAACAGGTCTTTTCTTAATAACAAGCCAGGCTTAGTCTTATTAAAAGGAACCAAGCTCTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020948.15
CDS-3UTR TCA 90 bp TTTATACATTTCCATTCAAACCAGTTGGGCTTAGTTTGCATACATTCTCACAACTGGCTATCAGACAGTTaGCATCTTCATACAGTCCAT +
Preference number: 4 (lower is better)
Translates to: FIHFHSNQLGLVCIHSHNWLSDS*HLHTVH
Trigger: ATGGACTGTATGAAGATGTCAACTGTCTGATAGCCA...GTTGTGAGAATGTATGCAAACTAAGCCCAACTGGTTTGAATGGAAATGTATAAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020948.15
CDS-3UTR TCA 90 bp CATTCATGCTTACATATGCATTTGGAGCAAAAGACTAAACAGCAGTGCAGAAAGAGGTCTTCTAAAGGATaGATAGTTTCATCCATGAGA +
Preference number: 4 (lower is better)
Translates to: HSCLHMHLEQKTKQQCRKRSSKG*IVSSMR
Trigger: TCTCATGGATGAAACTATTCATCCTTTAGAAGACCT...CTTTCTGCACTGCTGTTTAGTCTTTTGCTCCAAATGCATATGTAAGCATGAATG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020948.15
CDS-3UTR TCA 90 bp TTTATACATTTCCATTCAAACCAGTTGGGCTTAGTTTGCATACATTCTCACAACAGTCCATTAACGACATaGAGAGGAAGACAAAGCAGT +
Preference number: 4 (lower is better)
Translates to: FIHFHSNQLGLVCIHSHNSPLTT*RGRQSS
Trigger: ACTGCTTTGTCTTCCTCTTCATGTCGTTAATGGACT...GTTGTGAGAATGTATGCAAACTAAGCCCAACTGGTTTGAATGGAAATGTATAAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020948.15
CDS-3UTR TCA 90 bp TCCCAAAGGTGTGCCTTTCTTTACTTCTATGCTCTTTTTGAGTTGAAATCTTTCGATATAGAAGCTAAGTaGCCAAATGCCGCTGTTTTT +
Preference number: 4 (lower is better)
Translates to: SQRCAFLYFYALFELKSFDIEAK*PNAAVF
Trigger: AAAAACAGCGGCATTTGGTCACTTAGCTTCTATATC...GAAAGATTTCAACTCAAAAAGAGCATAGAAGTAAAGAAAGGCACACCTTTGGGA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020948.15
CDS-3UTR GCA 90 bp TCCCAAAGGTGTGCCTTTCTTTACTTCTATGCTCTTTTTGAGTTGAAATCTTTCTCCAGGTCAAAGGTCTaGTTAACTTTCTCTAACTTG +
Preference number: 4 (lower is better)
Translates to: SQRCAFLYFYALFELKSFSRSKV*LTFSNL
Trigger: CAAGTTAGAGAAAGTTAAGCAGACCTTTGACCTGGA...GAAAGATTTCAACTCAAAAAGAGCATAGAAGTAAAGAAAGGCACACCTTTGGGA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020948.15
CDS-3UTR CCA 90 bp TGTTTATTCAACATTCTACAGAACTATGGCTATAAGTGTCCTAAAGGGATGTGGCGATGTGATGTTTTCTaGAACACAGACTTCTTTCAG +
Preference number: 4 (lower is better)
Translates to: CLFNILQNYGYKCPKGMWRCDVF*NTDFFQ
Trigger: CTGAAAGAAGTCTGTGTTCCAGAAAACATCACATCG...CCACATCCCTTTAGGACACTTATAGCCATAGTTCTGTAGAATGTTGAATAAACA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR CCA 90 bp TGTCTCTTCTCTTTGTCCTCAGCACTTATACATCGTTCAGAATACATGATCACAACTCTGGCAAAGCTCTaGAAATCTATAAGTTGTTTC +
Preference number: 4 (lower is better)
Translates to: CLFSLSSALIHRSEYMITTLAKL*KSISCF
Trigger: GAAACAACTTATAGATTTCCAGAGCTTTGCCAGAGT...TGTGATCATGTATTCTGAACGATGTATAAGTGCTGAGGACAAAGAGAAGAGACA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020948.15
CDS-3UTR CCA 90 bp TTATTCAACATTCTACAGAACTATGGCTATAAGTGTCCTAAAGGGATGTGGAGAAGAAAACATGGTATCTaGGAAGCGAAAAAGGTAGTC +
Preference number: 4 (lower is better)
Translates to: LFNILQNYGYKCPKGMWRRKHGI*EAKKVV
Trigger: GACTACCTTTTTCGCTTCCCAGATACCATGTTTTCT...TCTCCACATCCCTTTAGGACACTTATAGCCATAGTTCTGTAGAATGTTGAATAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
3UTR CAA 72 bp TCTTTCCTACCTTTGGTTGGTGAGCTAGAAGAGAGGTaGAAGAACTTAAGAACCCTTATTAAAGTTGGTTTT +
Preference number: 4 (lower is better)
Translates to: SFLPLVGELEER*KNLRTLIKVGF
Trigger: AAAACCAACTTTAATAAGGGTTCTTAAGTTCTTCAACCTCTCTTCTAGCTCACCAACCAAAGGTAGGAAAGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020948.15
CDS-3UTR TCA 90 bp TGTTTATTCAACATTCTACAGAACTATGGCTATAAGTGTCCTAAAGGGATGTGGCAATATTACAGCCACTaGGAACACAGTGATGATATA +
Preference number: 4 (lower is better)
Translates to: CLFNILQNYGYKCPKGMWQYYSH*EHSDDI
Trigger: TATATCATCACTGTGTTCTCAGTGGCTGTAATATTG...CCACATCCCTTTAGGACACTTATAGCCATAGTTCTGTAGAATGTTGAATAAACA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR TCA 90 bp TTTATACATTTCCATTCAAACCAGTTGGGCTTAGTTTGCATACATTCTCACAACGGCTCTTCTGGGTTTTaGTACACATCATTGTTTCTT +
Preference number: 4 (lower is better)
Translates to: FIHFHSNQLGLVCIHSHNGSSGF*YTSLFL
Trigger: AAGAAACAATGATGTGTATCAAAACCCAGAAGAGCC...GTTGTGAGAATGTATGCAAACTAAGCCCAACTGGTTTGAATGGAAATGTATAAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020948.15
CDS-3UTR GCA 90 bp GTAACTGTTTATTCAACATTCTACAGAACTATGGCTATAAGTGTCCTAAAGGGATCCAGGTCAAAGGTCTaGTTAACTTTCTCTAACTTG +
Preference number: 4 (lower is better)
Translates to: VTVYSTFYRTMAISVLKGSRSKV*LTFSNL
Trigger: CAAGTTAGAGAAAGTTAAGCAGACCTTTGACCTGGA...TCCCTTTAGGACACTTATAGCCATAGTTCTGTAGAATGTTGAATAAACAGTTAC
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR CCA 90 bp GTAACTGTTTATTCAACATTCTACAGAACTATGGCTATAAGTGTCCTAAAGGGATCTTTCTCCACATCTTaGGGTGGAATTCCTCTTATT +
Preference number: 4 (lower is better)
Translates to: VTVYSTFYRTMAISVLKGSFSTS*GGIPLI
Trigger: AATAAGAGGAATTCCACCCCAAGATGTGGAGAAAGA...TCCCTTTAGGACACTTATAGCCATAGTTCTGTAGAATGTTGAATAAACAGTTAC
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR TCA 90 bp GTAACTGTTTATTCAACATTCTACAGAACTATGGCTATAAGTGTCCTAAAGGGAAGGTCTTCTAAAGGATaGATAGTTTCATCCATGAGA +
Preference number: 4 (lower is better)
Translates to: VTVYSTFYRTMAISVLKGRSSKG*IVSSMR
Trigger: TCTCATGGATGAAACTATTCATCCTTTAGAAGACCT...TCCCTTTAGGACACTTATAGCCATAGTTCTGTAGAATGTTGAATAAACAGTTAC
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR TCA 90 bp GTAACTGTTTATTCAACATTCTACAGAACTATGGCTATAAGTGTCCTAAAGGGAGTGGTATCAAAAAGATaGTGTAGTACTGTGTACCAT +
Preference number: 4 (lower is better)
Translates to: VTVYSTFYRTMAISVLKGVVSKR*CSTVYH
Trigger: ATGGTACACAGTACTACATCATCTTTTTGATACCAC...TCCCTTTAGGACACTTATAGCCATAGTTCTGTAGAATGTTGAATAAACAGTTAC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR CCA 90 bp GTAACTGTTTATTCAACATTCTACAGAACTATGGCTATAAGTGTCCTAAAGGGAACTCTGGCAAAGCTCTaGAAATCTATAAGTTGTTTC +
Preference number: 4 (lower is better)
Translates to: VTVYSTFYRTMAISVLKGTLAKL*KSISCF
Trigger: GAAACAACTTATAGATTTCCAGAGCTTTGCCAGAGT...TCCCTTTAGGACACTTATAGCCATAGTTCTGTAGAATGTTGAATAAACAGTTAC
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
3UTR CAA 72 bp ATTTATACATTTCCATTCAAACCAGTTGGGCTTAGTTaGCATACATTCTCACAACTGCATACTTATACACAC +
Preference number: 4 (lower is better)
Translates to: IYTFPFKPVGLS*HTFSQLHTYTH
Trigger: GTGTGTATAAGTATGCAGTTGTGAGAATGTATGCAAACTAAGCCCAACTGGTTTGAATGGAAATGTATAAAT
35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020948.15
CDS-3UTR GCA 90 bp TTTATACATTTCCATTCAAACCAGTTGGGCTTAGTTTGCATACATTCTCACAACAAAGTCGTCAATGCTTaGCTCTGTCTTATTAATGAT +
Preference number: 4 (lower is better)
Translates to: FIHFHSNQLGLVCIHSHNKVVNA*LCLIND
Trigger: ATCATTAATAAGACAGAGGCAAGCATTGACGACTTT...GTTGTGAGAATGTATGCAAACTAAGCCCAACTGGTTTGAATGGAAATGTATAAA
34% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020948.15
CDS-3UTR CCA 90 bp GTAACTGTTTATTCAACATTCTACAGAACTATGGCTATAAGTGTCCTAAAGGGACACATCATTGTTTCTTaGAGAAATTCTAAAGATGGG +
Preference number: 4 (lower is better)
Translates to: VTVYSTFYRTMAISVLKGHIIVS*RNSKDG
Trigger: CCCATCTTTAGAATTTCTCCAAGAAACAATGATGTG...TCCCTTTAGGACACTTATAGCCATAGTTCTGTAGAATGTTGAATAAACAGTTAC
34% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR CAA 90 bp GGTTCCCTGTGGTCCAGCCTCTATACGGTACTCACCCCTGTTCTCCAATCCCCGCTGAGGATCTCCGTATaGAGGGGCTCCACCTGCTCG +
Preference number: 5 (lower is better)
Translates to: GSLWSSLYTVLTPVLQSPLRISV*RGSTCS
Trigger: CGAGCAGGTGGAGCCCCTCAATACGGAGATCCTCAG...CGGGGATTGGAGAACAGGGGTGAGTACCGTATAGAGGCTGGACCACAGGGAACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS GCA 90 bp CGACATGAAGAGGAAGACAAAGCAGTACAGGGGAATGTCCACCATTaGCTGCCCGACCCAGTAAGCCGAAGGGAAGAGGCCGGAGACCCG +
Preference number: 5 (lower is better)
Translates to: RHEEEDKAVQGNVHH*LPDPVSRREEAGDP
Trigger: CGGGTCTCCGGCCTCTTCCCTTCGGCTTACTGGGTCGGGCAGGCAATGGTGGACATTCCCCTGTACTGCTTTGTCTTCCTCTTCATGTCG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR CAA 90 bp AGGTTCCCTGTGGTCCAGCCTCTATACGGTACTCACCCCTGTTCTCCAATCCCCTCCACACCCGGTGCCTaGAAAAGGGATCCAGGCCAG +
Preference number: 5 (lower is better)
Translates to: RFPVVQPLYGTHPCSPIPSTPGA*KRDPGQ
Trigger: CTGGCCTGGATCCCTTTTCAAGGCACCGGGTGTGGA...GGGGATTGGAGAACAGGGGTGAGTACCGTATAGAGGCTGGACCACAGGGAACCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR CAA 90 bp GTTCCCTGTGGTCCAGCCTCTATACGGTACTCACCCCTGTTCTCCAATCCCCGACATGCCCTGGGGCTGTaGTCCCGGAGCAAGGAAGTA +
Preference number: 5 (lower is better)
Translates to: VPCGPASIRYSPLFSNPRHALGL*SRSKEV
Trigger: TACTTCCTTGCTCCGGGACAACAGCCCCAGGGCATG...TCGGGGATTGGAGAACAGGGGTGAGTACCGTATAGAGGCTGGACCACAGGGAAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR CAA 90 bp AGGTTCCCTGTGGTCCAGCCTCTATACGGTACTCACCCCTGTTCTCCAATCCCCCATGCCCTGGGGCTGTaGTCCCGGAGCAAGGAAGTA +
Preference number: 5 (lower is better)
Translates to: RFPVVQPLYGTHPCSPIPHALGL*SRSKEV
Trigger: TACTTCCTTGCTCCGGGACAACAGCCCCAGGGCATG...GGGGATTGGAGAACAGGGGTGAGTACCGTATAGAGGCTGGACCACAGGGAACCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR CAA 90 bp GTTCCCTGTGGTCCAGCCTCTATACGGTACTCACCCCTGTTCTCCAATCCCCGATGCGATCGCACAGGTTaGCTGCCTCCAGAGTGCCAT +
Preference number: 5 (lower is better)
Translates to: VPCGPASIRYSPLFSNPRCDRTG*LPPECH
Trigger: ATGGCACTCTGGAGGCAGCAAACCTGTGCGATCGCA...TCGGGGATTGGAGAACAGGGGTGAGTACCGTATAGAGGCTGGACCACAGGGAAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR CAA 90 bp ACAAGGTTCCCTGTGGTCCAGCCTCTATACGGTACTCACCCCTGTTCTCCAATCTCCACACCCGGTGCCTaGAAAAGGGATCCAGGCCAG +
Preference number: 5 (lower is better)
Translates to: TRFPVVQPLYGTHPCSPISTPGA*KRDPGQ
Trigger: CTGGCCTGGATCCCTTTTCAAGGCACCGGGTGTGGA...GATTGGAGAACAGGGGTGAGTACCGTATAGAGGCTGGACCACAGGGAACCTTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR CAA 90 bp GAGAAGGCTAGACAAGGTTCCCTGTGGTCCAGCCTCTATACGGTACTCACCCCTTCCTTCACAGTGAGGTaGGGCCACAGAGCATTCTCC +
Preference number: 5 (lower is better)
Translates to: EKARQGSLWSSLYTVLTPSFTVR*GHRAFS
Trigger: GGAGAATGCTCTGTGGCCCAACCTCACTGTGAAGGA...AGGGGTGAGTACCGTATAGAGGCTGGACCACAGGGAACCTTGTCTAGCCTTCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR CAA 90 bp GGTTCCCTGTGGTCCAGCCTCTATACGGTACTCACCCCTGTTCTCCAATCCCCGCTTTTGCCAGCTCCATaGTGTCCCAACAATCCTAGA +
Preference number: 5 (lower is better)
Translates to: GSLWSSLYTVLTPVLQSPLLPAP*CPNNPR
Trigger: TCTAGGATTGTTGGGACACAATGGAGCTGGCAAAAG...CGGGGATTGGAGAACAGGGGTGAGTACCGTATAGAGGCTGGACCACAGGGAACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR CAA 90 bp GGTTCCCTGTGGTCCAGCCTCTATACGGTACTCACCCCTGTTCTCCAATCCCCGCTCTTTCTCCACATCTaGGGGTGGAATTCCTCTTAT +
Preference number: 5 (lower is better)
Translates to: GSLWSSLYTVLTPVLQSPLFLHI*GWNSSY
Trigger: ATAAGAGGAATTCCACCCCAAGATGTGGAGAAAGAG...CGGGGATTGGAGAACAGGGGTGAGTACCGTATAGAGGCTGGACCACAGGGAACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR CAA 90 bp TCCCTGTGGTCCAGCCTCTATACGGTACTCACCCCTGTTCTCCAATCCCCGAGGTTCAGTCTCTTGGTGTaGCATGCAAACGAAAAGCTG +
Preference number: 5 (lower is better)
Translates to: SLWSSLYTVLTPVLQSPRFSLLV*HANEKL
Trigger: CAGCTTTTCGTTTGCATGCAACACCAAGAGACTGAA...CCTCGGGGATTGGAGAACAGGGGTGAGTACCGTATAGAGGCTGGACCACAGGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR CAA 90 bp GTTCCCTGTGGTCCAGCCTCTATACGGTACTCACCCCTGTTCTCCAATCCCCGAATCTTGGCCTTCTTCTaGGAAAGGCAATGCTTCTGC +
Preference number: 5 (lower is better)
Translates to: VPCGPASIRYSPLFSNPRILAFF*ERQCFC
Trigger: GCAGAAGCATTGCCTTTCCAAGAAGAAGGCCAAGAT...TCGGGGATTGGAGAACAGGGGTGAGTACCGTATAGAGGCTGGACCACAGGGAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR CAA 90 bp AGGTTCCCTGTGGTCCAGCCTCTATACGGTACTCACCCCTGTTCTCCAATCCCCTTCCTAGTGGCTATCTaGGCCTTCTTCTTGGAAAGG +
Preference number: 5 (lower is better)
Translates to: RFPVVQPLYGTHPCSPIPFLVAI*AFFLER
Trigger: CCTTTCCAAGAAGAAGGCCAAGATAGCCACTAGGAA...GGGGATTGGAGAACAGGGGTGAGTACCGTATAGAGGCTGGACCACAGGGAACCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS TCA 90 bp CTGCCTCCAGAGTGCCATGCCGTCTGTCTTCTCTGTTTCCCTAAGTaGAGAGAGAGTTTGCTCCATCTCCATAAGCCTTTCTGTGTCCCC +
Preference number: 5 (lower is better)
Translates to: LPPECHAVCLLCFPK*RESLLHLHKPFCVP
Trigger: GGGGACACAGAAAGGCTTATGGAGATGGAGCAAACTCTCTCTTCACTTAGGGAAACAGAGAAGACAGACGGCATGGCACTCTGGAGGCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR CAA 90 bp GAGAAGGCTAGACAAGGTTCCCTGTGGTCCAGCCTCTATACGGTACTCACCCCTCACTTCAGCCTCCCATaGGAGATGAACACTTTCCTA +
Preference number: 5 (lower is better)
Translates to: EKARQGSLWSSLYTVLTPHFSLP*EMNTFL
Trigger: TAGGAAAGTGTTCATCTCCAATGGGAGGCTGAAGTG...AGGGGTGAGTACCGTATAGAGGCTGGACCACAGGGAACCTTGTCTAGCCTTCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR CAA 90 bp GAGAAGGCTAGACAAGGTTCCCTGTGGTCCAGCCTCTATACGGTACTCACCCCTTTCCTAGTGGCTATCTaGGCCTTCTTCTTGGAAAGG +
Preference number: 5 (lower is better)
Translates to: EKARQGSLWSSLYTVLTPFLVAI*AFFLER
Trigger: CCTTTCCAAGAAGAAGGCCAAGATAGCCACTAGGAA...AGGGGTGAGTACCGTATAGAGGCTGGACCACAGGGAACCTTGTCTAGCCTTCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR CAA 90 bp ACGTGGGAGACTGGCAGAGTTCTCATTGCAGTTTTGACTATCAGAAAAGGACCTCTGAGGATCTCCGTATaGAGGGGCTCCACCTGCTCG +
Preference number: 5 (lower is better)
Translates to: TWETGRVLIAVLTIRKGPLRISV*RGSTCS
Trigger: CGAGCAGGTGGAGCCCCTCAATACGGAGATCCTCAG...AGGTCCTTTTCTGATAGTCAAAACTGCAATGAGAACTCTGCCAGTCTCCCACGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000020948.15
CDS GCA 90 bp TGCTTTAACTTCAACAGGCGAACCTTTGCGATCGCACAGGTTTGCTaGCTCCAGAGTGCCATGCCGTCTGTCTTCTCTGTTTCCCTAAGT +
Preference number: 5 (lower is better)
Translates to: CFNFNRRTFAIAQVC*LQSAMPSVFSVSLS
Trigger: ACTTAGGGAAACAGAGAAGACAGACGGCATGGCACTCTGGAGGCAGCAAACCTGTGCGATCGCAAAGGTTCGCCTGTTGAAGTTAAAGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR CAA 90 bp AGGTTCCCTGTGGTCCAGCCTCTATACGGTACTCACCCCTGTTCTCCAATCCCCAAAAACTGGACAGATTaGATAACAAGTGCCAGGGAT +
Preference number: 5 (lower is better)
Translates to: RFPVVQPLYGTHPCSPIPKNWTD*ITSARD
Trigger: ATCCCTGGCACTTGTTATCAAATCTGTCCAGTTTTT...GGGGATTGGAGAACAGGGGTGAGTACCGTATAGAGGCTGGACCACAGGGAACCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR CAA 90 bp TCTGTCCTCAGCTCAGTTCTGTCTCTTCTCTTTGTCCTCAGCACTTATACATCGTCCTTCACAGTGAGGTaGGGCCACAGAGCATTCTCC +
Preference number: 5 (lower is better)
Translates to: SVLSSVLSLLFVLSTYTSSFTVR*GHRAFS
Trigger: GGAGAATGCTCTGTGGCCCAACCTCACTGTGAAGGA...CGATGTATAAGTGCTGAGGACAAAGAGAAGAGACAGAACTGAGCTGAGGACAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020948.15
CDS GCA 90 bp GCCATGCCGTCTGTCTTCTCTGTTTCCCTAAGTGAAGAGAGAGTTTaGTCCATCTCCATAAGCCTTTCTGTGTCCCCAGATCTCTCTGTT +
Preference number: 5 (lower is better)
Translates to: AMPSVFSVSLSEERV*SISISLSVSPDLSV
Trigger: AACAGAGAGATCTGGGGACACAGAAAGGCTTATGGAGATGGAGCAAACTCTCTCTTCACTTAGGGAAACAGAGAAGACAGACGGCATGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS CCA 90 bp CGTTGCTCAGGATGTCCATCAGAACTGGGAAGCAGTTCAGTCTCTTaGTGTTGCATGCAAACGAAAAGCTGTGGTTCTTCTCATTGCCAG +
Preference number: 5 (lower is better)
Translates to: RCSGCPSELGSSSVS*CCMQTKSCGSSHCQ
Trigger: CTGGCAATGAGAAGAACCACAGCTTTTCGTTTGCATGCAACACCAAGAGACTGAACTGCTTCCCAGTTCTGATGGACATCCTGAGCAACG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR CAA 90 bp ACAAGGTTCCCTGTGGTCCAGCCTCTATACGGTACTCACCCCTGTTCTCCAATCTATCATGAACCCAGATaGTCTGAAAGAATCGACTCG +
Preference number: 5 (lower is better)
Translates to: TRFPVVQPLYGTHPCSPIYHEPR*SERIDS
Trigger: CGAGTCGATTCTTTCAGACAATCTGGGTTCATGATA...GATTGGAGAACAGGGGTGAGTACCGTATAGAGGCTGGACCACAGGGAACCTTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR CAA 90 bp GGTACTCACCCCTGTTCTCCAATCCCCGAGGAACATCATAGTATTTATAATATAGGGGAATGTCCACCATaGCCTGCCCGACCCAGTAAG +
Preference number: 5 (lower is better)
Translates to: GTHPCSPIPEEHHSIYNIGECPP*PARPSK
Trigger: CTTACTGGGTCGGGCAGGCAATGGTGGACATTCCCC...TATATTATAAATACTATGATGTTCCTCGGGGATTGGAGAACAGGGGTGAGTACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR CAA 90 bp CACCCCTGTTCTCCAATCCCCGAGGAACATCATAGTATTTATAATATAGGTACTACTCGTCCCAGATCCTaGGTGGGCACTGAAGACAGG +
Preference number: 5 (lower is better)
Translates to: HPCSPIPEEHHSIYNIGTTRPRS*VGTEDR
Trigger: CCTGTCTTCAGTGCCCACCAAGGATCTGGGACGAGT...AGTACCTATATTATAAATACTATGATGTTCCTCGGGGATTGGAGAACAGGGGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS GCA 90 bp AGAAGCTTTCCTTCCCCTTCAGCTGATAGCTTGGCTGCAGGGATGTaGTGTTTAACAAGCGATGTGATGTTTTCTGGAACACAGACTTCT +
Preference number: 5 (lower is better)
Translates to: RSFPSPSADSLAAGM*CLTSDVMFSGTQTS
Trigger: AGAAGTCTGTGTTCCAGAAAACATCACATCGCTTGTTAAACAGCACATCCCTGCAGCCAAGCTATCAGCTGAAGGGGAAGGAAAGCTTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS GCA 90 bp TCAGGATGTCCATCAGAACTGGGAAGCAGTTCAGTCTCTTGGTGTTaGATGCAAACGAAAAGCTGTGGTTCTTCTCATTGCCAGACACTA +
Preference number: 5 (lower is better)
Translates to: SGCPSELGSSSVSWC*MQTKSCGSSHCQTL
Trigger: TAGTGTCTGGCAATGAGAAGAACCACAGCTTTTCGTTTGCATGCAACACCAAGAGACTGAACTGCTTCCCAGTTCTGATGGACATCCTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR CAA 90 bp TCTGTCCTCAGCTCAGTTCTGTCTCTTCTCTTTGTCCTCAGCACTTATACATCGCACTTCAGCCTCCCATaGGAGATGAACACTTTCCTA +
Preference number: 5 (lower is better)
Translates to: SVLSSVLSLLFVLSTYTSHFSLP*EMNTFL
Trigger: TAGGAAAGTGTTCATCTCCAATGGGAGGCTGAAGTG...CGATGTATAAGTGCTGAGGACAAAGAGAAGAGACAGAACTGAGCTGAGGACAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020948.15
CDS-3UTR CAA 90 bp TTATTCAACATTCTACAGAACTATGGCTATAAGTGTCCTAAAGGGATGTGGAGAGGGGAATGTCCACCATaGCCTGCCCGACCCAGTAAG +
Preference number: 5 (lower is better)
Translates to: LFNILQNYGYKCPKGMWRGECPP*PARPSK
Trigger: CTTACTGGGTCGGGCAGGCAATGGTGGACATTCCCC...TCTCCACATCCCTTTAGGACACTTATAGCCATAGTTCTGTAGAATGTTGAATAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS GCA 90 bp CCGACTACCAGTATCAAGAGCACAGATAAAAGTGTTTTCCTTTCGTaGTTTAACTTCAACAGGCGAACCTTTGCGATCGCACAGGTTTGC +
Preference number: 5 (lower is better)
Translates to: PTTSIKSTDKSVFLS*FNFNRRTFAIAQVC
Trigger: GCAAACCTGTGCGATCGCAAAGGTTCGCCTGTTGAAGTTAAAGCACGAAAGGAAAACACTTTTATCTGTGCTCTTGATACTGGTAGTCGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS GCA 90 bp GATGTCCATCAGAACTGGGAAGCAGTTCAGTCTCTTGGTGTTGCATaGAAACGAAAAGCTGTGGTTCTTCTCATTGCCAGACACTATAAG +
Preference number: 5 (lower is better)
Translates to: DVHQNWEAVQSLGVA*KRKAVVLLIARHYK
Trigger: CTTATAGTGTCTGGCAATGAGAAGAACCACAGCTTTTCGTTTGCATGCAACACCAAGAGACTGAACTGCTTCCCAGTTCTGATGGACATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR CAA 90 bp TCCCAAAGGTGTGCCTTTCTTTACTTCTATGCTCTTTTTGAGTTGAAATCTTTCTGCGATCGCACAGGTTaGCTGCCTCCAGAGTGCCAT +
Preference number: 5 (lower is better)
Translates to: SQRCAFLYFYALFELKSFCDRTG*LPPECH
Trigger: ATGGCACTCTGGAGGCAGCAAACCTGTGCGATCGCA...GAAAGATTTCAACTCAAAAAGAGCATAGAAGTAAAGAAAGGCACACCTTTGGGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020948.15
CDS-3UTR CAA 90 bp GTAACTGTTTATTCAACATTCTACAGAACTATGGCTATAAGTGTCCTAAAGGGAACTCGTCCCAGATCCTaGGTGGGCACTGAAGACAGG +
Preference number: 5 (lower is better)
Translates to: VTVYSTFYRTMAISVLKGTRPRS*VGTEDR
Trigger: CCTGTCTTCAGTGCCCACCAAGGATCTGGGACGAGT...TCCCTTTAGGACACTTATAGCCATAGTTCTGTAGAATGTTGAATAAACAGTTAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR CAA 90 bp CATTCATGCTTACATATGCATTTGGAGCAAAAGACTAAACAGCAGTGCAGAAAGCCCAGATCTCTCTGTTaGTCCTTCTCCCACGATGTC +
Preference number: 5 (lower is better)
Translates to: HSCLHMHLEQKTKQQCRKPRSLC*SFSHDV
Trigger: GACATCGTGGGAGAAGGACAAACAGAGAGATCTGGG...CTTTCTGCACTGCTGTTTAGTCTTTTGCTCCAAATGCATATGTAAGCATGAATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020948.15
CDS-3UTR CAA 90 bp CCTCCTGCTACTGATTTGTGTTTGGTGTTTGTGATTGCACTGGACAGCTGCTACAACAGAACACGGGATTaGTATGACGTGGCTTATAAT +
Preference number: 5 (lower is better)
Translates to: PPATDLCLVFVIALDSCYNRTRD*YDVAYN
Trigger: ATTATAAGCCACGTCATACAAATCCCGTGTTCTGTT...GTAGCAGCTGTCCAGTGCAATCACAAACACCAAACACAAATCAGTAGCAGGAGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020948.15
CDS-3UTR CAA 90 bp TGTCTCTTCTCTTTGTCCTCAGCACTTATACATCGTTCAGAATACATGATCACAGATTGCTTGCCATATTaGCTGCTGCCCCTCAGGATC +
Preference number: 5 (lower is better)
Translates to: CLFSLSSALIHRSEYMITDCLPY*LLPLRI
Trigger: GATCCTGAGGGGCAGCAGCAAATATGGCAAGCAATC...TGTGATCATGTATTCTGAACGATGTATAAGTGCTGAGGACAAAGAGAAGAGACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020948.15
CDS-3UTR CAA 90 bp GGTACTCACCCCTGTTCTCCAATCCCCGAGGAACATCATAGTATTTATAATATAAGCATTGATGGCAGCTaGAAGAGCCACAAATCCTTC +
Preference number: 5 (lower is better)
Translates to: GTHPCSPIPEEHHSIYNISIDGS*KSHKSF
Trigger: GAAGGATTTGTGGCTCTTCAAGCTGCCATCAATGCT...TATATTATAAATACTATGATGTTCCTCGGGGATTGGAGAACAGGGGTGAGTACC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR CAA 90 bp TCTGTCCTCAGCTCAGTTCTGTCTCTTCTCTTTGTCCTCAGCACTTATACATCGAAAAACTGGACAGATTaGATAACAAGTGCCAGGGAT +
Preference number: 5 (lower is better)
Translates to: SVLSSVLSLLFVLSTYTSKNWTD*ITSARD
Trigger: ATCCCTGGCACTTGTTATCAAATCTGTCCAGTTTTT...CGATGTATAAGTGCTGAGGACAAAGAGAAGAGACAGAACTGAGCTGAGGACAGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020948.15
CDS-3UTR CAA 90 bp ACGTGGGAGACTGGCAGAGTTCTCATTGCAGTTTTGACTATCAGAAAAGGACCTGATGTCCGTATTCATTaGGCAGAACTTTTTCGAAGT +
Preference number: 5 (lower is better)
Translates to: TWETGRVLIAVLTIRKGPDVRIH*AELFRS
Trigger: ACTTCGAAAAAGTTCTGCCAAATGAATACGGACATC...AGGTCCTTTTCTGATAGTCAAAACTGCAATGAGAACTCTGCCAGTCTCCCACGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000020948.15
CDS-3UTR CAA 90 bp CCCTGTTCTCCAATCCCCGAGGAACATCATAGTATTTATAATATAGGTACTAAACCCAGATCTCTCTGTTaGTCCTTCTCCCACGATGTC +
Preference number: 5 (lower is better)
Translates to: PCSPIPEEHHSIYNIGTKPRSLC*SFSHDV
Trigger: GACATCGTGGGAGAAGGACAAACAGAGAGATCTGGG...TTTAGTACCTATATTATAAATACTATGATGTTCCTCGGGGATTGGAGAACAGGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS TCA 90 bp TCACCTGATGAAGGAACGGGGTCTATTCCATCTTCAAGAATCACATaGGCAGGCTTTCGTGTTTGTAGCCAAAATGAAGATTTCAGGAAA +
Preference number: 5 (lower is better)
Translates to: SPDEGTGSIPSSRIT*AGFRVCSQNEDFRK
Trigger: TTTCCTGAAATCTTCATTTTGGCTACAAACACGAAAGCCTGCTCATGTGATTCTTGAAGATGGAATAGACCCCGTTCCTTCATCAGGTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS TCA 90 bp GTCAGAATCAGCCAGAATGCAGTCTTCCATAGGTCTTCTAAAGGATaGATAGTTTCATCCATGAGATATGTGCTTCTGTCGGTTTGGATG +
Preference number: 5 (lower is better)
Translates to: VRISQNAVFHRSSKG*IVSSMRYVLLSVWM
Trigger: CATCCAAACCGACAGAAGCACATATCTCATGGATGAAACTATTCATCCTTTAGAAGACCTATGGAAGACTGCATTCTGGCTGATTCTGAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR CAA 90 bp GTAACTGTTTATTCAACATTCTACAGAACTATGGCTATAAGTGTCCTAAAGGGAGATTGCTTGCCATATTaGCTGCTGCCCCTCAGGATC +
Preference number: 5 (lower is better)
Translates to: VTVYSTFYRTMAISVLKGDCLPY*LLPLRI
Trigger: GATCCTGAGGGGCAGCAGCAAATATGGCAAGCAATC...TCCCTTTAGGACACTTATAGCCATAGTTCTGTAGAATGTTGAATAAACAGTTAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS TCA 90 bp ACAAGATCAAGCATCCAACCAGAGTGGACGGTGGTATCAAAAAGATaGTGTAGTACTGTGTACCATCCACATCAAAAGCCAGCAATATTA +
Preference number: 5 (lower is better)
Translates to: TRSSIQPEWTVVSKR*CSTVYHPHQKPAIL
Trigger: TAATATTGCTGGCTTTTGATGTGGATGGTACACAGTACTACATCATCTTTTTGATACCACCGTCCACTCTGGTTGGATGCTTGATCTTGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS CCA 90 bp GAAAAGATGCAAAGACAAGATCAAGCATCCAACCAGAGTGGACGGTaGTATCAAAAAGATGATGTAGTACTGTGTACCATCCACATCAAA +
Preference number: 5 (lower is better)
Translates to: EKMQRQDQASNQSGR*YQKDDVVLCTIHIK
Trigger: TTTGATGTGGATGGTACACAGTACTACATCATCTTTTTGATACCACCGTCCACTCTGGTTGGATGCTTGATCTTGTCTTTGCATCTTTTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR CAA 90 bp CACCCCTGTTCTCCAATCCCCGAGGAACATCATAGTATTTATAATATAGGTACTTATCATGAACCCAGATaGTCTGAAAGAATCGACTCG +
Preference number: 5 (lower is better)
Translates to: HPCSPIPEEHHSIYNIGTYHEPR*SERIDS
Trigger: CGAGTCGATTCTTTCAGACAATCTGGGTTCATGATA...AGTACCTATATTATAAATACTATGATGTTCCTCGGGGATTGGAGAACAGGGGTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR CAA 90 bp CCCTGTTCTCCAATCCCCGAGGAACATCATAGTATTTATAATATAGGTACTAAAAGCATTGATGGCAGCTaGAAGAGCCACAAATCCTTC +
Preference number: 5 (lower is better)
Translates to: PCSPIPEEHHSIYNIGTKSIDGS*KSHKSF
Trigger: GAAGGATTTGTGGCTCTTCAAGCTGCCATCAATGCT...TTTAGTACCTATATTATAAATACTATGATGTTCCTCGGGGATTGGAGAACAGGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR CAA 90 bp TTATTCAACATTCTACAGAACTATGGCTATAAGTGTCCTAAAGGGATGTGGAGAATCTTGGCCTTCTTCTaGGAAAGGCAATGCTTCTGC +
Preference number: 5 (lower is better)
Translates to: LFNILQNYGYKCPKGMWRILAFF*ERQCFC
Trigger: GCAGAAGCATTGCCTTTCCAAGAAGAAGGCCAAGAT...TCTCCACATCCCTTTAGGACACTTATAGCCATAGTTCTGTAGAATGTTGAATAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR CAA 90 bp TTATTCAACATTCTACAGAACTATGGCTATAAGTGTCCTAAAGGGATGTGGAGACTTTTGCCAGCTCCATaGTGTCCCAACAATCCTAGA +
Preference number: 5 (lower is better)
Translates to: LFNILQNYGYKCPKGMWRLLPAP*CPNNPR
Trigger: TCTAGGATTGTTGGGACACAATGGAGCTGGCAAAAG...TCTCCACATCCCTTTAGGACACTTATAGCCATAGTTCTGTAGAATGTTGAATAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR CAA 90 bp CCCTGTTCTCCAATCCCCGAGGAACATCATAGTATTTATAATATAGGTACTAAACTCTTTCTCCACATCTaGGGGTGGAATTCCTCTTAT +
Preference number: 5 (lower is better)
Translates to: PCSPIPEEHHSIYNIGTKLFLHI*GWNSSY
Trigger: ATAAGAGGAATTCCACCCCAAGATGTGGAGAAAGAG...TTTAGTACCTATATTATAAATACTATGATGTTCCTCGGGGATTGGAGAACAGGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR CAA 90 bp CACCCCTGTTCTCCAATCCCCGAGGAACATCATAGTATTTATAATATAGGTACTTGGCTCTTCTGGGTTTaGATACACATCATTGTTTCT +
Preference number: 5 (lower is better)
Translates to: HPCSPIPEEHHSIYNIGTWLFWV*IHIIVS
Trigger: AGAAACAATGATGTGTATCAAAACCCAGAAGAGCCA...AGTACCTATATTATAAATACTATGATGTTCCTCGGGGATTGGAGAACAGGGGTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS TCA 90 bp AGGAATACCAGGAATGGCTCTATAACTTGTCCTTCTTCAAAGATTTaGCCTATGAAAAGATGCAAAGACAAGATCAAGCATCCAACCAGA +
Preference number: 5 (lower is better)
Translates to: RNTRNGSITCPSSKI*PMKRCKDKIKHPTR
Trigger: TCTGGTTGGATGCTTGATCTTGTCTTTGCATCTTTTCATAGGTCAAATCTTTGAAGAAGGACAAGTTATAGAGCCATTCCTGGTATTCCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR CAA 90 bp TGTTTATTCAACATTCTACAGAACTATGGCTATAAGTGTCCTAAAGGGATGTGGATGGCTATCAGACAGTaGACATCTTCATACAGTCCA +
Preference number: 5 (lower is better)
Translates to: CLFNILQNYGYKCPKGMWMAIRQ*TSSYSP
Trigger: TGGACTGTATGAAGATGTCAACTGTCTGATAGCCAT...CCACATCCCTTTAGGACACTTATAGCCATAGTTCTGTAGAATGTTGAATAAACA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR CAA 90 bp CCCTGTTCTCCAATCCCCGAGGAACATCATAGTATTTATAATATAGGTACTAAAAACAGAACACGGGATTaGTATGACGTGGCTTATAAT +
Preference number: 5 (lower is better)
Translates to: PCSPIPEEHHSIYNIGTKNRTRD*YDVAYN
Trigger: ATTATAAGCCACGTCATACAAATCCCGTGTTCTGTT...TTTAGTACCTATATTATAAATACTATGATGTTCCTCGGGGATTGGAGAACAGGG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR CAA 90 bp CCCTGTTCTCCAATCCCCGAGGAACATCATAGTATTTATAATATAGGTACTAAATGGCTCTTCTGGGTTTaGATACACATCATTGTTTCT +
Preference number: 5 (lower is better)
Translates to: PCSPIPEEHHSIYNIGTKWLFWV*IHIIVS
Trigger: AGAAACAATGATGTGTATCAAAACCCAGAAGAGCCA...TTTAGTACCTATATTATAAATACTATGATGTTCCTCGGGGATTGGAGAACAGGG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS-3UTR CAA 90 bp GTAACTGTTTATTCAACATTCTACAGAACTATGGCTATAAGTGTCCTAAAGGGAGATGTCCGTATTCATTaGGCAGAACTTTTTCGAAGT +
Preference number: 5 (lower is better)
Translates to: VTVYSTFYRTMAISVLKGDVRIH*AELFRS
Trigger: ACTTCGAAAAAGTTCTGCCAAATGAATACGGACATC...TCCCTTTAGGACACTTATAGCCATAGTTCTGTAGAATGTTGAATAAACAGTTAC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS GCA 72 bp GAGGAAGACAAAGCAGTACAGGGGAATGTCCACCATTaGCTGCCCGACCCAGTAAGCCGAAGGGAAGAGGCC +
Preference number: 6 (lower is better)
Translates to: EEDKAVQGNVHH*LPDPVSRREEA
Trigger: GGCCTCTTCCCTTCGGCTTACTGGGTCGGGCAGGCAATGGTGGACATTCCCCTGTACTGCTTTGTCTTCCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS GCA 72 bp GGCGACTGCAGCGTGACTTTTGCGCAAGCCCCTCACTaGAGCAAATATCTCCAGGTGCTCCTTCACAGTGAG +
Preference number: 6 (lower is better)
Translates to: GDCSVTFAQAPH*SKYLQVLLHSE
Trigger: CTCACTGTGAAGGAGCACCTGGAGATATTTGCTGCAGTGAGGGGCTTGCGCAAAAGTCACGCTGCAGTCGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS GCA 72 bp AACTTCAACAGGCGAACCTTTGCGATCGCACAGGTTTaGTGCCTCCAGAGTGCCATGCCGTCTGTCTTCTCT +
Preference number: 6 (lower is better)
Translates to: NFNRRTFAIAQV*CLQSAMPSVFS
Trigger: AGAGAAGACAGACGGCATGGCACTCTGGAGGCAGCAAACCTGTGCGATCGCAAAGGTTCGCCTGTTGAAGTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS TCA 72 bp CCCGCAGCTGGAACCAAGCTCTGTTCTTATAATCTGTaGCACTGCTCATGGCAATATAAGGAGGGCAAGCGG +
Preference number: 6 (lower is better)
Translates to: PAAGTKLCSYNL*HCSWQYKEGKR
Trigger: CCGCTTGCCCTCCTTATATTGCCATGAGCAGTGTCACAGATTATAAGAACAGAGCTTGGTTCCAGCTGCGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS CAA 72 bp GCTGGTGACAGGCGTGTACCCTATCATGAACCCAGATaGTCTGAAAGAATCGACTCGTCCCAGATCCTTGGT +
Preference number: 6 (lower is better)
Translates to: AGDRRVPYHEPR*SERIDSSQILG
Trigger: ACCAAGGATCTGGGACGAGTCGATTCTTTCAGACAATCTGGGTTCATGATAGGGTACACGCCTGTCACCAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS TCA 72 bp TCCTTGGTGGGCACTGAAGACAGGTCAGTAGCTCCATaGCCATGGGGATACCAATACAAGAAAAGCAGAAGG +
Preference number: 6 (lower is better)
Translates to: SLVGTEDRSVAP*PWGYQYKKSRR
Trigger: CCTTCTGCTTTTCTTGTATTGGTATCCCCATGGTCATGGAGCTACTGACCTGTCTTCAGTGCCCACCAAGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS CAA 90 bp CCGTTGCTCAGGATGTCCATCAGAACTGGGAAGCAGTTCAGTCTCTaGGTGTTGCATGCAAACGAAAAGCTGTGGTTCTTCTCATTGCCA +
Preference number: 6 (lower is better)
Translates to: PLLRMSIRTGKQFSL*VLHANEKLWFFSLP
Trigger: TGGCAATGAGAAGAACCACAGCTTTTCGTTTGCATGCAACACCAAGAGACTGAACTGCTTCCCAGTTCTGATGGACATCCTGAGCAACGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS TCA 72 bp GAGTGCCATGCCGTCTGTCTTCTCTGTTTCCCTAAGTaGAGAGAGAGTTTGCTCCATCTCCATAAGCCTTTC +
Preference number: 6 (lower is better)
Translates to: ECHAVCLLCFPK*RESLLHLHKPF
Trigger: GAAAGGCTTATGGAGATGGAGCAAACTCTCTCTTCACTTAGGGAAACAGAGAAGACAGACGGCATGGCACTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS TCA 72 bp TCAATGCTTGCCTCTGTCTTATTAATGATCAATAACTaGGTGAGCATGCCCTGGGGCTGTTGTCCCGGAGCA +
Preference number: 6 (lower is better)
Translates to: SMLASVLLMINN*VSMPWGCCPGA
Trigger: TGCTCCGGGACAACAGCCCCAGGGCATGCTCACTCAGTTATTGATCATTAATAAGACAGAGGCAAGCATTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS CAA 90 bp CTCAGGATGTCCATCAGAACTGGGAAGCAGTTCAGTCTCTTGGTGTaGCATGCAAACGAAAAGCTGTGGTTCTTCTCATTGCCAGACACT +
Preference number: 6 (lower is better)
Translates to: LRMSIRTGKQFSLLV*HANEKLWFFSLPDT
Trigger: AGTGTCTGGCAATGAGAAGAACCACAGCTTTTCGTTTGCATGCAACACCAAGAGACTGAACTGCTTCCCAGTTCTGATGGACATCCTGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS GCA 72 bp CAGAACTGGGAAGCAGTTCAGTCTCTTGGTGTTGCATaGAAACGAAAAGCTGTGGTTCTTCTCATTGCCAGA +
Preference number: 6 (lower is better)
Translates to: QNWEAVQSLGVA*KRKAVVLLIAR
Trigger: TCTGGCAATGAGAAGAACCACAGCTTTTCGTTTGCATGCAACACCAAGAGACTGAACTGCTTCCCAGTTCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS GCA 72 bp CCATCAGAACTGGGAAGCAGTTCAGTCTCTTGGTGTTaGATGCAAACGAAAAGCTGTGGTTCTTCTCATTGC +
Preference number: 6 (lower is better)
Translates to: PSELGSSSVSWC*MQTKSCGSSHC
Trigger: GCAATGAGAAGAACCACAGCTTTTCGTTTGCATGCAACACCAAGAGACTGAACTGCTTCCCAGTTCTGATGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS CCA 72 bp GGATGTCCATCAGAACTGGGAAGCAGTTCAGTCTCTTaGTGTTGCATGCAAACGAAAAGCTGTGGTTCTTCT +
Preference number: 6 (lower is better)
Translates to: GCPSELGSSSVS*CCMQTKSCGSS
Trigger: AGAAGAACCACAGCTTTTCGTTTGCATGCAACACCAAGAGACTGAACTGCTTCCCAGTTCTGATGGACATCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS CAA 72 bp AGGATGTCCATCAGAACTGGGAAGCAGTTCAGTCTCTaGGTGTTGCATGCAAACGAAAAGCTGTGGTTCTTC +
Preference number: 6 (lower is better)
Translates to: RMSIRTGKQFSL*VLHANEKLWFF
Trigger: GAAGAACCACAGCTTTTCGTTTGCATGCAACACCAAGAGACTGAACTGCTTCCCAGTTCTGATGGACATCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS TCA 72 bp ATCAGACAGTTGACATCTTCATACAGTCCATCACAATaGGCATTATGGTCTCTGAGTTCCCTCGACGTTGGG +
Preference number: 6 (lower is better)
Translates to: IRQLTSSYSPSQ*ALWSLSSLDVG
Trigger: CCCAACGTCGAGGGAACTCAGAGACCATAATGCTCATTGTGATGGACTGTATGAAGATGTCAACTGTCTGAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS CAA 72 bp TCCATCAGAACTGGGAAGCAGTTCAGTCTCTTGGTGTaGCATGCAAACGAAAAGCTGTGGTTCTTCTCATTG +
Preference number: 6 (lower is better)
Translates to: SIRTGKQFSLLV*HANEKLWFFSL
Trigger: CAATGAGAAGAACCACAGCTTTTCGTTTGCATGCAACACCAAGAGACTGAACTGCTTCCCAGTTCTGATGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS CAA 72 bp TTCCTGACACAAAACGAGACATTCCTAGTGGCTATCTaGGCCTTCTTCTTGGAAAGGCAATGCTTCTGCTTC +
Preference number: 6 (lower is better)
Translates to: FLTQNETFLVAI*AFFLERQCFCF
Trigger: GAAGCAGAAGCATTGCCTTTCCAAGAAGAAGGCCAAGATAGCCACTAGGAATGTCTCGTTTTGTGTCAGGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS CAA 72 bp TCCTCCAGGTCAAAGGTCTGCTTAACTTTCTCTAACTaGAAGAAAGCTTGGGATAAAGGCTGTACAGCTTCC +
Preference number: 6 (lower is better)
Translates to: SSRSKVCLTFSN*KKAWDKGCTAS
Trigger: GGAAGCTGTACAGCCTTTATCCCAAGCTTTCTTCAAGTTAGAGAAAGTTAAGCAGACCTTTGACCTGGAGGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS CAA 90 bp CAGGACAGCTGTCAAGACTCTGGCAAAGCTCTGGAAATCTATAAGTaGTTTCTAAGGGTAATGTATAGAGAAGCTTTCCTTCCCCTTCAG +
Preference number: 6 (lower is better)
Translates to: QDSCQDSGKALEIYK*FLRVMYREAFLPLQ
Trigger: CTGAAGGGGAAGGAAAGCTTCTCTATACATTACCCTTAGAAACAACTTATAGATTTCCAGAGCTTTGCCAGAGTCTTGACAGCTGTCCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS TCA 72 bp TTATGGTCTCTGAGTTCCCTCGACGTTGGGATTCTCTaGTCAAACTGGAATTTCAGATGGTATGAGAATGTG +
Preference number: 6 (lower is better)
Translates to: LWSLSSLDVGIL*SNWNFRWYENV
Trigger: CACATTCTCATACCATCTGAAATTCCAGTTTGATCAGAGAATCCCAACGTCGAGGGAACTCAGAGACCATAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS TCA 72 bp GAAGGAACGGGGTCTATTCCATCTTCAAGAATCACATaGGCAGGCTTTCGTGTTTGTAGCCAAAATGAAGAT +
Preference number: 6 (lower is better)
Translates to: EGTGSIPSSRIT*AGFRVCSQNED
Trigger: ATCTTCATTTTGGCTACAAACACGAAAGCCTGCTCATGTGATTCTTGAAGATGGAATAGACCCCGTTCCTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS TCA 72 bp TCTGGAACACAGACTTCTTTCAGCTGCAAACTTAAGTaGTACCCAACTCCCCATTTCTTCTTCAGAAAGAGC +
Preference number: 6 (lower is better)
Translates to: SGTQTSFSCKLK*YPTPHFFFRKS
Trigger: GCTCTTTCTGAAGAAGAAATGGGGAGTTGGGTATCACTTAAGTTTGCAGCTGAAAGAAGTCTGTGTTCCAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS CCA 72 bp ACAATGAGCATTATGGTCTCTGAGTTCCCTCGACGTTaGGATTCTCTGATCAAACTGGAATTTCAGATGGTA +
Preference number: 6 (lower is better)
Translates to: TMSIMVSEFPRR*DSLIKLEFQMV
Trigger: TACCATCTGAAATTCCAGTTTGATCAGAGAATCCCAACGTCGAGGGAACTCAGAGACCATAATGCTCATTGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS CCA 72 bp TTTGAAATATTTCTGATTCTGATGGATTCTTTCCCGTaGAATTCTGGGGACACCGGTTCAAACGAGTCACCT +
Preference number: 6 (lower is better)
Translates to: FEIFLILMDSFP*NSGDTGSNESP
Trigger: AGGTGACTCGTTTGAACCGGTGTCCCCAGAATTCCACGGGAAAGAATCCATCAGAATCAGAAATATTTCAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS CCA 72 bp CAAAGACAAGATCAAGCATCCAACCAGAGTGGACGGTaGTATCAAAAAGATGATGTAGTACTGTGTACCATC +
Preference number: 6 (lower is better)
Translates to: QRQDQASNQSGR*YQKDDVVLCTI
Trigger: GATGGTACACAGTACTACATCATCTTTTTGATACCACCGTCCACTCTGGTTGGATGCTTGATCTTGTCTTTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS TCA 72 bp AAATACCAGCATGAAATTGGTTGCTATAATCAGATTTaGGCCACTGGCTGGATCAGGGGGTGCATTAGAATT +
Preference number: 6 (lower is better)
Translates to: KYQHEIGCYNQI*ATGWIRGCIRI
Trigger: AATTCTAATGCACCCCCTGATCCAGCCAGTGGCTCAAATCTGATTATAGCAACCAATTTCATGCTGGTATTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS TCA 72 bp AGCCAGAATGCAGTCTTCCATAGGTCTTCTAAAGGATaGATAGTTTCATCCATGAGATATGTGCTTCTGTCG +
Preference number: 6 (lower is better)
Translates to: SQNAVFHRSSKG*IVSSMRYVLLS
Trigger: CGACAGAAGCACATATCTCATGGATGAAACTATTCATCCTTTAGAAGACCTATGGAAGACTGCATTCTGGCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS CAA 72 bp GATCAGGGATATGGCATAGCCAACAGAACACGGGATTaGTATGACGTGGCTTATAATAGAAAACATGGTATC +
Preference number: 6 (lower is better)
Translates to: DQGYGIANRTRD*YDVAYNRKHGI
Trigger: GATACCATGTTTTCTATTATAAGCCACGTCATACAAATCCCGTGTTCTGTTGGCTATGCCATATCCCTGATC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS TCA 72 bp CAAATCCTTCCTTCCAGAATATGGCTATCAGACAGTTaGCATCTTCATACAGTCCATCACAATGAGCATTAT +
Preference number: 6 (lower is better)
Translates to: QILPSRIWLSDS*HLHTVHHNEHY
Trigger: ATAATGCTCATTGTGATGGACTGTATGAAGATGTCAACTGTCTGATAGCCATATTCTGGAAGGAAGGATTTG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS CAA 72 bp CAGGAATGGCTCTATAACTTGTCCTTCTTCAAAGATTaGACCTATGAAAAGATGCAAAGACAAGATCAAGCA +
Preference number: 6 (lower is better)
Translates to: QEWLYNLSFFKD*TYEKMQRQDQA
Trigger: TGCTTGATCTTGTCTTTGCATCTTTTCATAGGTCAAATCTTTGAAGAAGGACAAGTTATAGAGCCATTCCTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS CAA 72 bp GAAAGGAATGAGGAATACCAGGAATGGCTCTATAACTaGTCCTTCTTCAAAGATTTGACCTATGAAAAGATG +
Preference number: 6 (lower is better)
Translates to: ERNEEYQEWLYN*SFFKDLTYEKM
Trigger: CATCTTTTCATAGGTCAAATCTTTGAAGAAGGACAAGTTATAGAGCCATTCCTGGTATTCCTCATTCCTTTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS CAA 90 bp AACATGAAGGAAAGGAATGAGGAATACCAGGAATGGCTCTATAACTaGTCCTTCTTCAAAGATTTGACCTATGAAAAGATGCAAAGACAA +
Preference number: 6 (lower is better)
Translates to: NMKERNEEYQEWLYN*SFFKDLTYEKMQRQ
Trigger: TTGTCTTTGCATCTTTTCATAGGTCAAATCTTTGAAGAAGGACAAGTTATAGAGCCATTCCTGGTATTCCTCATTCCTTTCCTTCATGTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3
CDS TCA 72 bp AGGAATGGCTCTATAACTTGTCCTTCTTCAAAGATTTaGCCTATGAAAAGATGCAAAGACAAGATCAAGCAT +
Preference number: 6 (lower is better)
Translates to: RNGSITCPSSKI*PMKRCKDKIKH
Trigger: ATGCTTGATCTTGTCTTTGCATCTTTTCATAGGTCAAATCTTTGAAGAAGGACAAGTTATAGAGCCATTCCT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020948.15
ENSMUST00000106669.3