RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ABCA7 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000035722

Ensembl transcript IDs: ENSMUST00000043866.8, ENSMUST00000132517.8, ENSMUST00000171637.8

Found 597 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp TCTCATTCTAGTTTCTTTTTATTTCCCCCAGAGCCCAAGGCTTTCTaGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCTTTGCC +
Preference number: 1 (lower is better)
Translates to: SHSSFFLFPPEPKAF*EPAYGTEILCLSFA
Trigger: GGCAAAGCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAATAAAAAGAAACTAGAATGAGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000132517.8
CDS-3UTR TCA 90 bp CCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTCCAGAGAACCAGCTaGCCCTCGGGGCCTCCGCAG +
Preference number: 4 (lower is better)
Translates to: PPEPKAFWEPAYGTEILCLQRTS*PSGPPQ
Trigger: CTGCGGAGGCCCCGAGGGTCAGCTGGTTCTCTGGAG...ACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR GCA 90 bp TTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCAAGAGTCCGCCCAGGTaGAGGCGCTCGCGCCAGGCC +
Preference number: 4 (lower is better)
Translates to: FPPEPKAFWEPAYGTEILKSPPR*RRSRQA
Trigger: GGCCTGGCGCGAGCGCCTGCACCTGGGCGGACTCTT...GAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR GCA 90 bp AGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCCACACCGTGGGCCCTaGCCTGGGCAGCCAGCTCCC +
Preference number: 4 (lower is better)
Translates to: RAQGFLGASVWYRDPLSEPHRGP*PGQPAP
Trigger: GGGAGCTGGCTGCCCAGGGCAGGGCCCACGGTGTGG...CTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR GCA 90 bp TATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCCCACACCGTGGGCCCTaGCCTGGGCAGCCAGCTCCC +
Preference number: 4 (lower is better)
Translates to: YFPQSPRLSGSQRMVQRSPHRGP*PGQPAP
Trigger: GGGAGCTGGCTGCCCAGGGCAGGGCCCACGGTGTGG...GGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAATA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR TCA 90 bp TTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCCCAGCAACGCAGCGCTaGCCAGGAAGGGTCCCAGGC +
Preference number: 4 (lower is better)
Translates to: FPPEPKAFWEPAYGTEILPATQR*PGRVPG
Trigger: GCCTGGGACCCTTCCTGGTCAGCGCTGCGTTGCTGG...GAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR TCA 90 bp TCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGGGGCAGCCAGCTCCCTaGACACTCGTGTCAGGGTGC +
Preference number: 4 (lower is better)
Translates to: SPRAQGFLGASVWYRDPLGQPAP*TLVSGC
Trigger: GCACCCTGACACGAGTGTTCAGGGAGCTGGCTGCCC...CAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR GCA 90 bp CCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCGCAGCCAGGGCACCGTaGCCGCCGATGGTAATGGCT +
Preference number: 4 (lower is better)
Translates to: PQSPRLSGSQRMVQRSSVAARAP*PPMVMA
Trigger: AGCCATTACCATCGGCGGGCACGGTGCCCTGGCTGC...GACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR GCA 90 bp GCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCTTAAGAGTCCGCCCAGGTaGAGGCGCTCGCGCCAGGCC +
Preference number: 4 (lower is better)
Translates to: AQGFLGASVWYRDPLSELKSPPR*RRSRQA
Trigger: GGCCTGGCGCGAGCGCCTGCACCTGGGCGGACTCTT...AAGCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR GCA 90 bp CCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTTTGGGCAGCGTTGGGTaGCAAGCCCTGTGGGGCCAG +
Preference number: 4 (lower is better)
Translates to: PPEPKAFWEPAYGTEILCLGSVG*QALWGQ
Trigger: CTGGCCCCACAGGGCTTGGCACCCAACGCTGCCCAA...ACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
CDS-3UTR GCA 90 bp CAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCTTTGCCCACACCGTGGGCCCTaGCCTGGGCAGCCAGCTCCC +
Preference number: 4 (lower is better)
Translates to: QGFLGASVWYRDPLSELCPHRGP*PGQPAP
Trigger: GGGAGCTGGCTGCCCAGGGCAGGGCCCACGGTGTGG...GCAAAGCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp TCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGAACTCTGAGCGACGGTaGCCACCGCGAAGGCCGCCA +
Preference number: 4 (lower is better)
Translates to: SPRAQGFLGASVWYRDPLNSERR*PPRRPP
Trigger: TGGCGGCCTTCGCGGTGGCCACCGTCGCTCAGAGTT...CAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp TCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGGCACTTGGGCAGCGTTaGGTGCCAAGCCCTGTGGGG +
Preference number: 4 (lower is better)
Translates to: SPRAQGFLGASVWYRDPLALGQR*VPSPVG
Trigger: CCCCACAGGGCTTGGCACCCAACGCTGCCCAAGTGC...CAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp CCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAAGTCCTCCACACCGTaGGCCCTGCCCTGGGCAGCC +
Preference number: 4 (lower is better)
Translates to: PEPKAFWEPAYGTEILCLKSSTP*ALPWAA
Trigger: GGCTGCCCAGGGCAGGGCCCACGGTGTGGAGGACTT...CAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR TCA 90 bp TATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCCCAGCAACGCAGCGCTaGCCAGGAAGGGTCCCAGGC +
Preference number: 4 (lower is better)
Translates to: YFPQSPRLSGSQRMVQRSPATQR*PGRVPG
Trigger: GCCTGGGACCCTTCCTGGTCAGCGCTGCGTTGCTGG...GGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAATA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR TCA 90 bp GCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCTTCCAGCAACGCAGCGCTaGCCAGGAAGGGTCCCAGGC +
Preference number: 4 (lower is better)
Translates to: AQGFLGASVWYRDPLSELPATQR*PGRVPG
Trigger: GCCTGGGACCCTTCCTGGTCAGCGCTGCGTTGCTGG...AAGCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR TCA 90 bp CCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGGGCAGCCAGCTCCCTaGACACTCGTGTCAGGGTGC +
Preference number: 4 (lower is better)
Translates to: PRAQGFLGASVWYRDPLSGQPAP*TLVSGC
Trigger: GCACCCTGACACGAGTGTTCAGGGAGCTGGCTGCCC...AGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR TCA 90 bp CCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGGGGCAGCCAGCTCCCTaGACACTCGTGTCAGGGTGC +
Preference number: 4 (lower is better)
Translates to: PEPKAFWEPAYGTEILCLGQPAP*TLVSGC
Trigger: GCACCCTGACACGAGTGTTCAGGGAGCTGGCTGCCC...CAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR GCA 90 bp CCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGTTGCAGACAAGGCCCTaGAGCCAGGGCACCGTGCCC +
Preference number: 4 (lower is better)
Translates to: PEPKAFWEPAYGTEILCLLQTRP*SQGTVP
Trigger: GGGCACGGTGCCCTGGCTGCAGGGCCTTGTCTGCAA...CAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR GCA 90 bp CCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGTGGGCTCTGGGTGTCTaGTGCCTCTGCCCTGTGCCC +
Preference number: 4 (lower is better)
Translates to: PEPKAFWEPAYGTEILCLWALGV*CLCPVP
Trigger: GGGCACAGGGCAGAGGCAGCAGACACCCAGAGCCCA...CAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR GCA 90 bp CCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCGCAGGTAGAGACCTGTaGGGGAGTTCCCGCCACCGA +
Preference number: 4 (lower is better)
Translates to: PQSPRLSGSQRMVQRSSVAGRDL*GSSRHR
Trigger: TCGGTGGCGGGAACTCCCGCACAGGTCTCTACCTGC...GACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR GCA 90 bp TCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGCCTCCGCGGGGCCTGTaGCCAAATTGTGCCACTGAG +
Preference number: 4 (lower is better)
Translates to: SPRAQGFLGASVWYRDPLPPRGL*PNCATE
Trigger: CTCAGTGGCACAATTTGGGCACAGGCCCCGCGGAGG...CAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR GCA 90 bp CCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGTTGGGCAGCGTTGGGTaGCAAGCCCTGTGGGGCCAG +
Preference number: 4 (lower is better)
Translates to: PEPKAFWEPAYGTEILCLLGSVG*QALWGQ
Trigger: CTGGCCCCACAGGGCTTGGCACCCAACGCTGCCCAA...CAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
CDS-3UTR CCA 90 bp CCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTGGCCCCCTGGACTGCTaGGTCCCTTGGTACTGCAGA +
Preference number: 4 (lower is better)
Translates to: PPEPKAFWEPAYGTEILCGPLDC*VPWYCR
Trigger: TCTGCAGTACCAAGGGACCCAGCAGTCCAGGGGGCC...ACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp CCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCGGCCCCCTGGACTGCTaGGTCCCTTGGTACTGCAGA +
Preference number: 4 (lower is better)
Translates to: PQSPRLSGSQRMVQRSSVGPLDC*VPWYCR
Trigger: TCTGCAGTACCAAGGGACCCAGCAGTCCAGGGGGCC...GACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp TTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTAACTCTGAGCGACGGTaGCCACCGCGAAGGCCGCCA +
Preference number: 4 (lower is better)
Translates to: FPQSPRLSGSQRMVQRSSNSERR*PPRRPP
Trigger: TGGCGGCCTTCGCGGTGGCCACCGTCGCTCAGAGTT...AGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp TTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCGCACTTGGGCAGCGTTaGGTGCCAAGCCCTGTGGGG +
Preference number: 4 (lower is better)
Translates to: FPPEPKAFWEPAYGTEILALGQR*VPSPVG
Trigger: CCCCACAGGGCTTGGCACCCAACGCTGCCCAAGTGC...GAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp AGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGAAGTCCTCCACACCGTaGGCCCTGCCCTGGGCAGCC +
Preference number: 4 (lower is better)
Translates to: RAQGFLGASVWYRDPLSEKSSTP*ALPWAA
Trigger: GGCTGCCCAGGGCAGGGCCCACGGTGTGGAGGACTT...CTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR TCA 90 bp TTATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCCAGAGAACCAGCTaGCCCTCGGGGCCTCCGCAG +
Preference number: 4 (lower is better)
Translates to: LFPPEPKAFWEPAYGTEILQRTS*PSGPPQ
Trigger: CTGCGGAGGCCCCGAGGGTCAGCTGGTTCTCTGGAG...GATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAATAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR TCA 90 bp TTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTCTGAGCAGAAAACTCTaGGCGACGGTGGCCACCGCG +
Preference number: 4 (lower is better)
Translates to: FPQSPRLSGSQRMVQRSSLSRKL*ATVATA
Trigger: CGCGGTGGCCACCGTCGCTCAGAGTTTTCTGCTCAG...AGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR TCA 90 bp TCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGACCCGCTCACGCTCTTaGGCCACATCCTCATCCTCC +
Preference number: 4 (lower is better)
Translates to: SPRAQGFLGASVWYRDPLTRSRS*ATSSSS
Trigger: GGAGGATGAGGATGTGGCTCAAGAGCGTGAGCGGGT...CAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR TCA 90 bp TTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTCTTCCCTGCCCCGTTaGCACCCAGCAGCCCGAAAC +
Preference number: 4 (lower is better)
Translates to: FPPEPKAFWEPAYGTEILSSLPR*HPAARN
Trigger: GTTTCGGGCTGCTGGGTGTCAACGGGGCAGGGAAGA...GAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR GCA 90 bp AGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGGCAGCCAGGGCACCGTaGCCGCCGATGGTAATGGCT +
Preference number: 4 (lower is better)
Translates to: RAQGFLGASVWYRDPLSEAARAP*PPMVMA
Trigger: AGCCATTACCATCGGCGGGCACGGTGCCCTGGCTGC...CTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR GCA 90 bp TATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCGCTGCCTCTGCCCTGTaGCCCCCACATCCAGAAGCC +
Preference number: 4 (lower is better)
Translates to: YFPQSPRLSGSQRMVQRSAASAL*PPHPEA
Trigger: GGCTTCTGGATGTGGGGGGCACAGGGCAGAGGCAGC...GGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAATA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR GCA 90 bp CCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGGCAGGTAGAGACCTGTaGGGGAGTTCCCGCCACCGA +
Preference number: 4 (lower is better)
Translates to: PEPKAFWEPAYGTEILCLAGRDL*GSSRHR
Trigger: TCGGTGGCGGGAACTCCCGCACAGGTCTCTACCTGC...CAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR GCA 90 bp GCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCTTACAGGCCCCGGCGGCTaGGGCGAGCAAGCAGAAAAC +
Preference number: 4 (lower is better)
Translates to: AQGFLGASVWYRDPLSELTGPGG*GEQAEN
Trigger: GTTTTCTGCTTGCTCGCCGCAGCCGCCGGGGCCTGT...AAGCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR GCA 90 bp CCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTAGGCAACACAACCTGTaGAAACAGGCCCCGGCGGCT +
Preference number: 4 (lower is better)
Translates to: PPEPKAFWEPAYGTEILCRQHNL*KQAPAA
Trigger: AGCCGCCGGGGCCTGTTTGCACAGGTTGTGTTGCCT...ACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp AGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGAACTCTGAGCGACGGTaGCCACCGCGAAGGCCGCCA +
Preference number: 4 (lower is better)
Translates to: RAQGFLGASVWYRDPLSENSERR*PPRRPP
Trigger: TGGCGGCCTTCGCGGTGGCCACCGTCGCTCAGAGTT...CTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp CCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCCATCATGGCCCAGGATaGAGGCCGAGCCACTACTGG +
Preference number: 4 (lower is better)
Translates to: PQSPRLSGSQRMVQRSSVHHGPG*RPSHYW
Trigger: CCAGTAGTGGCTCGGCCTCCATCCTGGGCCATGATG...GACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp TCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGAGCCACCTGCCACCATaGCCACGCGATCTCCCAAGA +
Preference number: 4 (lower is better)
Translates to: SPRAQGFLGASVWYRDPLSHLPP*PRDLPR
Trigger: TCTTGGGAGATCGCGTGGCCATGGTGGCAGGTGGCT...CAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp ATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTGCACTTGGGCAGCGTTaGGTGCCAAGCCCTGTGGGG +
Preference number: 4 (lower is better)
Translates to: ISPRAQGFLGASVWYRDPALGQR*VPSPVG
Trigger: CCCCACAGGGCTTGGCACCCAACGCTGCCCAAGTGC...AGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAAT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp TCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGGTCCAGCCTTGCACTTaGGCAGCGTTGGGTGCCAAG +
Preference number: 4 (lower is better)
Translates to: SPRAQGFLGASVWYRDPLVQPCT*AALGAK
Trigger: CTTGGCACCCAACGCTGCCCAAGTGCAAGGCTGGAC...CAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp CCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGGCAGCTTCATCCGGTTaGGGTCCCCAGGGGCATCCT +
Preference number: 4 (lower is better)
Translates to: PEPKAFWEPAYGTEILCLAASSG*GPQGHP
Trigger: AGGATGCCCCTGGGGACCCCAACCGGATGAAGCTGC...CAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp TTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCGCAGCTTCATCCGGTTaGGGTCCCCAGGGGCATCCT +
Preference number: 4 (lower is better)
Translates to: FPPEPKAFWEPAYGTEILAASSG*GPQGHP
Trigger: AGGATGCCCCTGGGGACCCCAACCGGATGAAGCTGC...GAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp CCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGCAGCTTCATCCGGTTaGGGTCCCCAGGGGCATCCT +
Preference number: 4 (lower is better)
Translates to: PRAQGFLGASVWYRDPLSAASSG*GPQGHP
Trigger: AGGATGCCCCTGGGGACCCCAACCGGATGAAGCTGC...AGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp TTATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCAAGTCCTCCACACCGTaGGCCCTGCCCTGGGCAGCC +
Preference number: 4 (lower is better)
Translates to: LFPPEPKAFWEPAYGTEIKSSTP*ALPWAA
Trigger: GGCTGCCCAGGGCAGGGCCCACGGTGTGGAGGACTT...GATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAATAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR TCA 90 bp TATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCCAGAGCAGGCAGGGCTaGGACTGTTGTCAGGCAGGG +
Preference number: 4 (lower is better)
Translates to: YFPQSPRLSGSQRMVQRSQSRQG*DCCQAG
Trigger: CCCTGCCTGACAACAGTCTCAGCCCTGCCTGCTCTG...GGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAATA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR TCA 90 bp CCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCCACAAGAGCTTCCTCTaGGGGCACAGCCTCCAGCTT +
Preference number: 4 (lower is better)
Translates to: PQSPRLSGSQRMVQRSSVHKSFL*GHSLQL
Trigger: AAGCTGGAGGCTGTGCCCTCAGAGGAAGCTCTTGTG...GACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR TCA 90 bp CCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCACTCAGGGCTGGAGATaGCAGTTCGGATGGGTCCAG +
Preference number: 4 (lower is better)
Translates to: PQSPRLSGSQRMVQRSSVTQGWR*QFGWVQ
Trigger: CTGGACCCATCCGAACTGTCATCTCCAGCCCTGAGT...GACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR TCA 90 bp TTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCAGGAGCTCCAGCTGCTaGTCCAGCTCCTGGAAGACC +
Preference number: 4 (lower is better)
Translates to: FPPEPKAFWEPAYGTEILRSSSC*SSSWKT
Trigger: GGTCTTCCAGGAGCTGGATCAGCAGCTGGAGCTCCT...GAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR TCA 90 bp TTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCAGATCCCGTAGCCTGTaGGACCCAGGAGCTCCAGCT +
Preference number: 4 (lower is better)
Translates to: FPPEPKAFWEPAYGTEILRSRSL*DPGAPA
Trigger: AGCTGGAGCTCCTGGGTCTCACAGGCTACGGGATCT...GAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR TCA 90 bp CCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGATCCCGTAGCCTGTaGGACCCAGGAGCTCCAGCT +
Preference number: 4 (lower is better)
Translates to: PEPKAFWEPAYGTEILCLRSRSL*DPGAPA
Trigger: AGCTGGAGCTCCTGGGTCTCACAGGCTACGGGATCT...CAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR TCA 90 bp CCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTACCCGCTCACGCTCTTaGGCCACATCCTCATCCTCC +
Preference number: 4 (lower is better)
Translates to: PRAQGFLGASVWYRDPLSTRSRS*ATSSSS
Trigger: GGAGGATGAGGATGTGGCTCAAGAGCGTGAGCGGGT...AGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR TCA 90 bp ATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTTCTTCCCTGCCCCGTTaGCACCCAGCAGCCCGAAAC +
Preference number: 4 (lower is better)
Translates to: ISPRAQGFLGASVWYRDPSSLPR*HPAARN
Trigger: GTTTCGGGCTGCTGGGTGTCAACGGGGCAGGGAAGA...AGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAAT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR TCA 90 bp GCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCTTTCTTCCCTGCCCCGTTaGCACCCAGCAGCCCGAAAC +
Preference number: 4 (lower is better)
Translates to: AQGFLGASVWYRDPLSELSSLPR*HPAARN
Trigger: GTTTCGGGCTGCTGGGTGTCAACGGGGCAGGGAAGA...AAGCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR GCA 90 bp CCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCACTCTCCTGTGGTCGTaGTCCACCTCCAACTGCCCT +
Preference number: 4 (lower is better)
Translates to: PQSPRLSGSQRMVQRSSVTLLWS*STSNCP
Trigger: AGGGCAGTTGGAGGTGGAGCACGACCACAGGAGAGT...GACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR GCA 90 bp CCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCTTTGCTGCCTCTGCCCTGTaGCCCCCACATCCAGAAGCC +
Preference number: 4 (lower is better)
Translates to: PKAFWEPAYGTEILCLSFAASAL*PPHPEA
Trigger: GGCTTCTGGATGTGGGGGGCACAGGGCAGAGGCAGC...AAAGCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR GCA 90 bp CCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCTTTTGGGCTCTGGGTGTCTaGTGCCTCTGCCCTGTGCCC +
Preference number: 4 (lower is better)
Translates to: PKAFWEPAYGTEILCLSFWALGV*CLCPVP
Trigger: GGGCACAGGGCAGAGGCAGCAGACACCCAGAGCCCA...AAAGCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR GCA 90 bp TTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGCTCCAGCAGGTCCTaGAGGTACACGAAGCCTCCC +
Preference number: 4 (lower is better)
Translates to: FPPEPKAFWEPAYGTEILCSSRS*RYTKPP
Trigger: GGGAGGCTTCGTGTACCTGCAGGACCTGCTGGAGCA...GAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR GCA 90 bp TATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCACTCGCACAGCTGCCTaGTCCAGCAGGTCCTGCAGG +
Preference number: 4 (lower is better)
Translates to: YFPQSPRLSGSQRMVQRSTRTAA*SSRSCR
Trigger: CCTGCAGGACCTGCTGGAGCAGGCAGCTGTGCGAGT...GGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAATA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR GCA 90 bp AGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGACTCGCACAGCTGCCTaGTCCAGCAGGTCCTGCAGG +
Preference number: 4 (lower is better)
Translates to: RAQGFLGASVWYRDPLSETRTAA*SSRSCR
Trigger: CCTGCAGGACCTGCTGGAGCAGGCAGCTGTGCGAGT...CTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR GCA 90 bp ATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTGAGCACTCGCACAGCTaGCTGCTCCAGCAGGTCCTG +
Preference number: 4 (lower is better)
Translates to: ISPRAQGFLGASVWYRDPEHSHS*LLQQVL
Trigger: CAGGACCTGCTGGAGCAGGCAGCTGTGCGAGTGCTC...AGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAAT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR GCA 90 bp ATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCCTCCGCGGGGCCTGTaGCCAAATTGTGCCACTGAG +
Preference number: 4 (lower is better)
Translates to: ISPRAQGFLGASVWYRDPPPRGL*PNCATE
Trigger: CTCAGTGGCACAATTTGGGCACAGGCCCCGCGGAGG...AGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAAT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR GCA 90 bp TCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCAAGGTTGAGTCCTTaGAGGGCTGGCTGCGGACAG +
Preference number: 4 (lower is better)
Translates to: SPRAQGFLGASVWYRDPLSRLSP*RAGCGQ
Trigger: CTGTCCGCAGCCAGCCCTGCAAGGACTCAACCTTGA...CAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR GCA 90 bp CCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTCAAGGTTGAGTCCTTaGAGGGCTGGCTGCGGACAG +
Preference number: 4 (lower is better)
Translates to: PQSPRLSGSQRMVQRSSVSRLSP*RAGCGQ
Trigger: CTGTCCGCAGCCAGCCCTGCAAGGACTCAACCTTGA...GACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR GCA 90 bp CCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTGTAGCAATTCCCAAATaGCACGGCGGGAAGCGGGGT +
Preference number: 4 (lower is better)
Translates to: PPEPKAFWEPAYGTEILCVAIPK*HGGKRG
Trigger: ACCCCGCTTCCCGCCGTGGCATTTGGGAATTGCTAC...ACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR GCA 90 bp CCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGGTGCGAAGGTGCAGCTaGGGTCTAGAGTCCCCACCT +
Preference number: 4 (lower is better)
Translates to: PEPKAFWEPAYGTEILCLVRRCS*GLESPP
Trigger: AGGTGGGGACTCTAGACCGCAGCTGCACCTTCGCAC...CAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR GCA 90 bp TTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGCTGTGGAGTGCATGTaGGAAGGTGCAGCTGCGGTC +
Preference number: 4 (lower is better)
Translates to: FPQSPRLSGSQRMVQRSSAVECM*EGAAAV
Trigger: GACCGCAGCTGCACCTTCGCACATGCACTCCACAGC...AGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR GCA 90 bp CAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCTTTGCACAGGCCCCGGCGGCTaGGGCGAGCAAGCAGAAAAC +
Preference number: 4 (lower is better)
Translates to: QGFLGASVWYRDPLSELCTGPGG*GEQAEN
Trigger: GTTTTCTGCTTGCTCGCCGCAGCCGCCGGGGCCTGT...GCAAAGCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR GCA 90 bp GAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCAGGCAACACAACCTGTaGAAACAGGCCCCGGCGGCT +
Preference number: 4 (lower is better)
Translates to: EPKAFWEPAYGTEILCLSRQHNL*KQAPAA
Trigger: AGCCGCCGGGGCCTGTTTGCACAGGTTGTGTTGCCT...GCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR GCA 90 bp TTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTATAGCAGGGCTGAGCTaGAGGGGTGGGTACTGGCCA +
Preference number: 4 (lower is better)
Translates to: FPQSPRLSGSQRMVQRSSIAGLS*RGGYWP
Trigger: TGGCCAGTACCCACCCCTGCAGCTCAGCCCTGCTAT...AGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR GCA 90 bp TCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGATTCTGGCGTCCAGTTaGCACTGGCCAGGATGCTGG +
Preference number: 4 (lower is better)
Translates to: SPRAQGFLGASVWYRDPLILASS*HWPGCW
Trigger: CCAGCATCCTGGCCAGTGGCAACTGGACGCCAGAAT...CAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR GCA 90 bp TTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGGGCTCCAGGCTGACTaGATTGGCAAGCTGGGGATG +
Preference number: 4 (lower is better)
Translates to: FPQSPRLSGSQRMVQRSSGLQAD*IGKLGM
Trigger: CATCCCCAGCTTGCCAATGCAGTCAGCCTGGAGCCC...AGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR GCA 90 bp CCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCGCGCTCAAAGGCATCTaGCATGGCCTGGTTCCGAAC +
Preference number: 4 (lower is better)
Translates to: PQSPRLSGSQRMVQRSSVALKGI*HGLVPN
Trigger: GTTCGGAACCAGGCCATGGCAGATGCCTTTGAGCGC...GACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR GCA 90 bp TTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCGGTGGATGTCTTCCCTaGCCCGTTGACACCCAGCAG +
Preference number: 4 (lower is better)
Translates to: FPPEPKAFWEPAYGTEILGGCLP*PVDTQQ
Trigger: CTGCTGGGTGTCAACGGGGCAGGGAAGACATCCACC...GAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR GCA 90 bp CCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGGTGGATGTCTTCCCTaGCCCGTTGACACCCAGCAG +
Preference number: 4 (lower is better)
Translates to: PRAQGFLGASVWYRDPLSGGCLP*PVDTQQ
Trigger: CTGCTGGGTGTCAACGGGGCAGGGAAGACATCCACC...AGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR GCA 90 bp ATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTGCGCACTTGGGTCCATaGCTGTGGTGGGCTCGTCCA +
Preference number: 4 (lower is better)
Translates to: ISPRAQGFLGASVWYRDPAHLGP*LWWARP
Trigger: TGGACGAGCCCACCACAGGCATGGACCCAAGTGCGC...AGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAAT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR GCA 90 bp TATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCGCGCACTTGGGTCCATaGCTGTGGTGGGCTCGTCCA +
Preference number: 4 (lower is better)
Translates to: YFPQSPRLSGSQRMVQRSAHLGP*LWWARP
Trigger: TGGACGAGCCCACCACAGGCATGGACCCAAGTGCGC...GGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAATA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR GCA 90 bp GCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCTTGCGCACTTGGGTCCATaGCTGTGGTGGGCTCGTCCA +
Preference number: 4 (lower is better)
Translates to: AQGFLGASVWYRDPLSELAHLGP*LWWARP
Trigger: TGGACGAGCCCACCACAGGCATGGACCCAAGTGCGC...AAGCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp AGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGATGTCCTGGATGCTGTaGCCCCCGAGCACTGTGCGG +
Preference number: 4 (lower is better)
Translates to: RAQGFLGASVWYRDPLSEMSWML*PPSTVR
Trigger: CCGCACAGTGCTCGGGGGCCACAGCATCCAGGACAT...CTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp ATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTATGTCCTGGATGCTGTaGCCCCCGAGCACTGTGCGG +
Preference number: 4 (lower is better)
Translates to: ISPRAQGFLGASVWYRDPMSWML*PPSTVR
Trigger: CCGCACAGTGCTCGGGGGCCACAGCATCCAGGACAT...AGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAAT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp GCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCTTGCATCCAGCATGTCCTaGATGCTGTGGCCCCCGAGC +
Preference number: 4 (lower is better)
Translates to: AQGFLGASVWYRDPLSELASSMS*MLWPPS
Trigger: GCTCGGGGGCCACAGCATCCAGGACATGCTGGATGC...AAGCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp GAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCGGAGCTCCATCAGGCTaGGCAGTGTCAGGAGCTCCT +
Preference number: 4 (lower is better)
Translates to: EPKAFWEPAYGTEILCLSGAPSG*AVSGAP
Trigger: AGGAGCTCCTGACACTGCCCAGCCTGATGGAGCTCC...GCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp TTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGGAGCTCCATCAGGCTaGGCAGTGTCAGGAGCTCCT +
Preference number: 4 (lower is better)
Translates to: FPQSPRLSGSQRMVQRSSGAPSG*AVSGAP
Trigger: AGGAGCTCCTGACACTGCCCAGCCTGATGGAGCTCC...AGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp TCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGCACGTAGCAGGGGTGTaGCATCTGCTGCAGGTAGAG +
Preference number: 4 (lower is better)
Translates to: SPRAQGFLGASVWYRDPLHVAGV*HLLQVE
Trigger: CTCTACCTGCAGCAGATGCCACACCCCTGCTACGTG...CAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp CCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCCACGTAGCAGGGGTGTaGCATCTGCTGCAGGTAGAG +
Preference number: 4 (lower is better)
Translates to: PQSPRLSGSQRMVQRSSVHVAGV*HLLQVE
Trigger: CTCTACCTGCAGCAGATGCCACACCCCTGCTACGTG...GACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp GAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCCATCATGGCCCAGGATaGAGGCCGAGCCACTACTGG +
Preference number: 4 (lower is better)
Translates to: EPKAFWEPAYGTEILCLSHHGPG*RPSHYW
Trigger: CCAGTAGTGGCTCGGCCTCCATCCTGGGCCATGATG...GCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp CCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCCCAGGTGGGGCCGGATaGCTGCCATGTTGGTTTGTA +
Preference number: 4 (lower is better)
Translates to: PQSPRLSGSQRMVQRSSVPGGAG*LPCWFV
Trigger: TACAAACCAACATGGCAGCCATCCGGCCCCACCTGG...GACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp TTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCGTCCAGCCTTGCACTTaGGCAGCGTTGGGTGCCAAG +
Preference number: 4 (lower is better)
Translates to: FPPEPKAFWEPAYGTEILVQPCT*AALGAK
Trigger: CTTGGCACCCAACGCTGCCCAAGTGCAAGGCTGGAC...GAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp GAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCGTCCAGCCTTGCACTTaGGCAGCGTTGGGTGCCAAG +
Preference number: 4 (lower is better)
Translates to: EPKAFWEPAYGTEILCLSVQPCT*AALGAK
Trigger: CTTGGCACCCAACGCTGCCCAAGTGCAAGGCTGGAC...GCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp CCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGCGTCCAGTTGCCACTaGCCAGGATGCTGGCCACAT +
Preference number: 4 (lower is better)
Translates to: PRAQGFLGASVWYRDPLSASSCH*PGCWPH
Trigger: ATGTGGCCAGCATCCTGGCCAGTGGCAACTGGACGC...AGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp TTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTCAGGCGATCCACAGCTaGGTTCCTCTGCCCACGGTA +
Preference number: 4 (lower is better)
Translates to: FPQSPRLSGSQRMVQRSSQAIHS*VPLPTV
Trigger: TACCGTGGGCAGAGGAACCCAGCTGTGGATCGCCTG...AGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp CCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTTAGAGTCAGTGTGTaGCCAGCCCCGAACCTGCCT +
Preference number: 4 (lower is better)
Translates to: PPEPKAFWEPAYGTEILCLRVSV*PAPNLP
Trigger: AGGCAGGTTCGGGGCTGGCCACACACTGACTCTAAG...ACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR TCA 90 bp CCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTATAGAATCCTGGGCTTaGCCCAGCACAGGATCCAGG +
Preference number: 4 (lower is better)
Translates to: PPEPKAFWEPAYGTEILCIESWA*PSTGSR
Trigger: CCTGGATCCTGTGCTGGGTCAAGCCCAGGATTCTAT...ACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR TCA 90 bp CAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCTTTGCCAGAGCAGGCAGGGCTaGGACTGTTGTCAGGCAGGG +
Preference number: 4 (lower is better)
Translates to: QGFLGASVWYRDPLSELCQSRQG*DCCQAG
Trigger: CCCTGCCTGACAACAGTCTCAGCCCTGCCTGCTCTG...GCAAAGCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR TCA 90 bp CCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCTTTCAGAGCAGGCAGGGCTaGGACTGTTGTCAGGCAGGG +
Preference number: 4 (lower is better)
Translates to: PKAFWEPAYGTEILCLSFQSRQG*DCCQAG
Trigger: CCCTGCCTGACAACAGTCTCAGCCCTGCCTGCTCTG...AAAGCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR TCA 90 bp TCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGAAGGTCTGGTTCACCTaGGCCATGAGCTTCCGAGTG +
Preference number: 4 (lower is better)
Translates to: SPRAQGFLGASVWYRDPLKVWFT*AMSFRV
Trigger: CACTCGGAAGCTCATGGCTCAGGTGAACCAGACCTT...CAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR TCA 90 bp CCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCAAGGTCTGGTTCACCTaGGCCATGAGCTTCCGAGTG +
Preference number: 4 (lower is better)
Translates to: PQSPRLSGSQRMVQRSSVKVWFT*AMSFRV
Trigger: CACTCGGAAGCTCATGGCTCAGGTGAACCAGACCTT...GACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR TCA 90 bp CAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCTTTGCCTGAGCAGAAAACTCTaGGCGACGGTGGCCACCGCG +
Preference number: 4 (lower is better)
Translates to: QGFLGASVWYRDPLSELCLSRKL*ATVATA
Trigger: CGCGGTGGCCACCGTCGCTCAGAGTTTTCTGCTCAG...GCAAAGCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR TCA 90 bp CCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCTTTCTGAGCAGAAAACTCTaGGCGACGGTGGCCACCGCG +
Preference number: 4 (lower is better)
Translates to: PKAFWEPAYGTEILCLSFLSRKL*ATVATA
Trigger: CGCGGTGGCCACCGTCGCTCAGAGTTTTCTGCTCAG...AAAGCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR TCA 90 bp CCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCGCTGGCTGGGACAAATaGCATGGCGAAGACCACACA +
Preference number: 4 (lower is better)
Translates to: PQSPRLSGSQRMVQRSSVAGWDK*HGEDHT
Trigger: TGTGTGGTCTTCGCCATGTCATTTGTCCCAGCCAGC...GACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR TCA 90 bp TTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCCCTTGGTCAAGTCCCTaGGGACTAGCACATCCCCCT +
Preference number: 4 (lower is better)
Translates to: FPPEPKAFWEPAYGTEILPWSSP*GLAHPP
Trigger: AGGGGGATGTGCTAGTCCTCAGGGACTTGACCAAGG...GAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR TCA 90 bp CCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGCTGCCTTTGAGATGCTaGGAGCTTCCCAGACAGCGG +
Preference number: 4 (lower is better)
Translates to: PEPKAFWEPAYGTEILCLLPLRC*ELPRQR
Trigger: CCGCTGTCTGGGAAGCTCTCAGCATCTCAAAGGCAG...CAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR GCA 90 bp TCTTTTTATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGGCAGCCAGGGCACCGTaGCCGCCGATGGTAATGGCT +
Preference number: 4 (lower is better)
Translates to: SFYFPQSPRLSGSQRMVQAARAP*PPMVMA
Trigger: AGCCATTACCATCGGCGGGCACGGTGCCCTGGCTGC...CTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAATAAAAAGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
CDS-3UTR GCA 90 bp TTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCTTTGCCACTCATTGCAGACAAGGCCCTaGAGCCAGGGCACCGTGCCC +
Preference number: 4 (lower is better)
Translates to: FLGASVWYRDPLSELCHSLQTRP*SQGTVP
Trigger: GGGCACGGTGCCCTGGCTGCAGGGCCTTGTCTGCAA...TGAGTGGCAAAGCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR GCA 90 bp TTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGATGGGTCCAGAGGATaGTCTGGGCTCAGGAACACG +
Preference number: 4 (lower is better)
Translates to: FPQSPRLSGSQRMVQRSSDGSRG*SGLRNT
Trigger: CGTGTTCCTGAGCCCAGAGCATCCTCTGGACCCATC...AGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR GCA 90 bp CAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCTTTGCGAGCACTCGCACAGCTaGCTGCTCCAGCAGGTCCTG +
Preference number: 4 (lower is better)
Translates to: QGFLGASVWYRDPLSELCEHSHS*LLQQVL
Trigger: CAGGACCTGCTGGAGCAGGCAGCTGTGCGAGTGCTC...GCAAAGCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR GCA 90 bp TTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCCCTTGCAGGGCTGGCTaGGGACAGCCACGAAAATGT +
Preference number: 4 (lower is better)
Translates to: FPPEPKAFWEPAYGTEILPCRAG*GQPRKC
Trigger: ACATTTTCGTGGCTGTCCGCAGCCAGCCCTGCAAGG...GAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR GCA 90 bp CCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTACAGTGTGGTTGTCTTaGCAGCCCCGTTGTGACCCA +
Preference number: 4 (lower is better)
Translates to: PPEPKAFWEPAYGTEILCTVWLS*QPRCDP
Trigger: TGGGTCACAACGGGGCTGGCAAGACAACCACACTGT...ACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR GCA 90 bp GAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCGTAGCAATTCCCAAATaGCACGGCGGGAAGCGGGGT +
Preference number: 4 (lower is better)
Translates to: EPKAFWEPAYGTEILCLSVAIPK*HGGKRG
Trigger: ACCCCGCTTCCCGCCGTGGCATTTGGGAATTGCTAC...GCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR GCA 90 bp AGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGGTGCGAAGGTGCAGCTaGGGTCTAGAGTCCCCACCT +
Preference number: 4 (lower is better)
Translates to: RAQGFLGASVWYRDPLSEVRRCS*GLESPP
Trigger: AGGTGGGGACTCTAGACCGCAGCTGCACCTTCGCAC...CTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR GCA 90 bp GCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCTTGTGCGAAGGTGCAGCTaGGGTCTAGAGTCCCCACCT +
Preference number: 4 (lower is better)
Translates to: AQGFLGASVWYRDPLSELVRRCS*GLESPP
Trigger: AGGTGGGGACTCTAGACCGCAGCTGCACCTTCGCAC...AAGCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR GCA 90 bp AGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGGGGCTCCAGGCTGACTaGATTGGCAAGCTGGGGATG +
Preference number: 4 (lower is better)
Translates to: RAQGFLGASVWYRDPLSEGLQAD*IGKLGM
Trigger: CATCCCCAGCTTGCCAATGCAGTCAGCCTGGAGCCC...CTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR GCA 90 bp TTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGCGCTCAAAGGCATCTaGCATGGCCTGGTTCCGAAC +
Preference number: 4 (lower is better)
Translates to: FPQSPRLSGSQRMVQRSSALKGI*HGLVPN
Trigger: GTTCGGAACCAGGCCATGGCAGATGCCTTTGAGCGC...AGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR GCA 90 bp CCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTTGTCCCCTGTCACCATaGGGAAGGTGGATGTCTTCC +
Preference number: 4 (lower is better)
Translates to: PPEPKAFWEPAYGTEILCCPLSP*GRWMSS
Trigger: GGAAGACATCCACCTTCCGCATGGTGACAGGGGACA...ACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR GCA 90 bp TTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCTTTGCCACTCAGTTGGGCAGCGTTGGGTaGCAAGCCCTGTGGGGCTTG +
Preference number: 4 (lower is better)
Translates to: FWEPAYGTEILCLSFATQLGSVG*QALWGL
Trigger: CAAGCCCCACAGGGCTTGGCACCCAACGCTGCCCAA...CTGAGTGGCAAAGCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp ATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTGGAGCTCCATCAGGCTaGGCAGTGTCAGGAGCTCCT +
Preference number: 4 (lower is better)
Translates to: ISPRAQGFLGASVWYRDPGAPSG*AVSGAP
Trigger: AGGAGCTCCTGACACTGCCCAGCCTGATGGAGCTCC...AGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp CCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTTTTCCCGAGGATCAATaGCTTCAGGCGCCTCCAGAG +
Preference number: 4 (lower is better)
Translates to: PPEPKAFWEPAYGTEILCFPEDQ*LQAPPE
Trigger: CTCTGGAGGCGCCTGAAGCCATTGATCCTCGGGAAA...ACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp CCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGCCTCCAACTTCTTCTaGGCTCTGGGTGTCTGCTGC +
Preference number: 4 (lower is better)
Translates to: PRAQGFLGASVWYRDPLSASNFF*ALGVCC
Trigger: GCAGCAGACACCCAGAGCCCAGAAGAAGTTGGAGGC...AGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp CCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGCACGTAGCAGGGGTGTaGCATCTGCTGCAGGTAGAG +
Preference number: 4 (lower is better)
Translates to: PEPKAFWEPAYGTEILCLHVAGV*HLLQVE
Trigger: CTCTACCTGCAGCAGATGCCACACCCCTGCTACGTG...CAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp GAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCCTTCCACCAGAACCTTaGGATCTTGTGGGGCAGGGG +
Preference number: 4 (lower is better)
Translates to: EPKAFWEPAYGTEILCLSLPPEP*DLVGQG
Trigger: CCCCTGCCCCACAAGATCCCAAGGTTCTGGTGGAAG...GCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp CCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGGCCGAGCCACTACTaGGTGGGAAGAGACCACTCA +
Preference number: 4 (lower is better)
Translates to: PEPKAFWEPAYGTEILCLRPSHY*VGRDHS
Trigger: TGAGTGGTCTCTTCCCACCCAGTAGTGGCTCGGCCT...CAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp TATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCCATCATGGCCCAGGATaGAGGCCGAGCCACTACTGG +
Preference number: 4 (lower is better)
Translates to: YFPQSPRLSGSQRMVQRSHHGPG*RPSHYW
Trigger: CCAGTAGTGGCTCGGCCTCCATCCTGGGCCATGATG...GGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAATA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp TTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCATTCCACCAGAGAGGTaGCGTGTCTGTGTGTCCCGC +
Preference number: 4 (lower is better)
Translates to: FPPEPKAFWEPAYGTEILIPPER*RVCVSR
Trigger: GCGGGACACACAGACACGCCACCTCTCTGGTGGAAT...GAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp GCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCTTAGCCACCTGCCACCATaGCCACGCGATCTCCCAAGA +
Preference number: 4 (lower is better)
Translates to: AQGFLGASVWYRDPLSELSHLPP*PRDLPR
Trigger: TCTTGGGAGATCGCGTGGCCATGGTGGCAGGTGGCT...AAGCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp CCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTAGCAGAAAACGCTTGTaGAGCAGAGCCCGGAGCTGT +
Preference number: 4 (lower is better)
Translates to: PPEPKAFWEPAYGTEILCSRKRL*SRARSC
Trigger: ACAGCTCCGGGCTCTGCTCCACAAGCGTTTTCTGCT...ACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp CCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGCAGGGGTGGGTACTaGCCAAAAGGAGGCACAATG +
Preference number: 4 (lower is better)
Translates to: PQSPRLSGSQRMVQRSSVCRGGY*PKGGTM
Trigger: CATTGTGCCTCCTTTTGGCCAGTACCCACCCCTGCA...GACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp AGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGGCGTCCAGTTGCCACTaGCCAGGATGCTGGCCACAT +
Preference number: 4 (lower is better)
Translates to: RAQGFLGASVWYRDPLSEASSCH*PGCWPH
Trigger: ATGTGGCCAGCATCCTGGCCAGTGGCAACTGGACGC...CTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp CCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGTGGGGATGGAGATTCTaGCGTCCAGTTGCCACTGGC +
Preference number: 4 (lower is better)
Translates to: PEPKAFWEPAYGTEILCLWGWRF*RPVATG
Trigger: GCCAGTGGCAACTGGACGCCAGAATCTCCATCCCCA...CAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp CAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCTTTGCCGGCCAGTGAGGTTCTaGACCACCTCCCCCAAGCCA +
Preference number: 4 (lower is better)
Translates to: QGFLGASVWYRDPLSELCRPVRF*TTSPKP
Trigger: TGGCTTGGGGGAGGTGGTCCAGAACCTCACTGGCCG...GCAAAGCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp TTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCCCTGGGCCATCATaGCCAGGAGGTTCTTGCCAA +
Preference number: 4 (lower is better)
Translates to: FPQSPRLSGSQRMVQRSSVPGPS*PGGSCQ
Trigger: TTGGCAAGAACCTCCTGGCCATGATGGCCCAGGGAC...AGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp GAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCCTGCTTCACCACTGCTaGGCAGTGTGTCCCCTGTCA +
Preference number: 4 (lower is better)
Translates to: EPKAFWEPAYGTEILCLSLLHHC*AVCPLS
Trigger: TGACAGGGGACACACTGCCCAGCAGTGGTGAAGCAG...GCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp TTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTCTGCTTCACCACTGCTaGGCAGTGTGTCCCCTGTCA +
Preference number: 4 (lower is better)
Translates to: FPQSPRLSGSQRMVQRSSLLHHC*AVCPLS
Trigger: TGACAGGGGACACACTGCCCAGCAGTGGTGAAGCAG...AGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp TCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCCTCCAGAGTGGTCTaGCTCACAGAGAAGTCCTCC +
Preference number: 4 (lower is better)
Translates to: SPRAQGFLGASVWYRDPLSSRVV*LTEKSS
Trigger: GGAGGACTTCTCTGTGAGCCAGACCACTCTGGAGGA...CAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR TCA 90 bp GAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCATAGAATCCTGGGCTTaGCCCAGCACAGGATCCAGG +
Preference number: 4 (lower is better)
Translates to: EPKAFWEPAYGTEILCLSIESWA*PSTGSR
Trigger: CCTGGATCCTGTGCTGGGTCAAGCCCAGGATTCTAT...GCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR TCA 90 bp TCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGACATCCAGAAGCCTCTaGAGCATGGCCACGTTGGTA +
Preference number: 4 (lower is better)
Translates to: SPRAQGFLGASVWYRDPLTSRSL*SMATLV
Trigger: TACCAACGTGGCCATGCTTCAGAGGCTTCTGGATGT...CAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR TCA 90 bp CCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCTTTAGGAGCTCCAGCTGCTaGTCCAGCTCCTGGAAGACC +
Preference number: 4 (lower is better)
Translates to: PKAFWEPAYGTEILCLSFRSSSC*SSSWKT
Trigger: GGTCTTCCAGGAGCTGGATCAGCAGCTGGAGCTCCT...AAAGCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR TCA 90 bp CCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCAGAAGCCCCCATATCTaGCCTCATCCACCCACTTCT +
Preference number: 4 (lower is better)
Translates to: PQSPRLSGSQRMVQRSSVRSPHI*PHPPTS
Trigger: AGAAGTGGGTGGATGAGGTCAGATATGGGGGCTTCT...GACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR TCA 90 bp TTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTTCCGAACCATGTCAATaGGCCCTCGGCCAAGGCAAA +
Preference number: 4 (lower is better)
Translates to: FPQSPRLSGSQRMVQRSSSEPCQ*ALGQGK
Trigger: TTTGCCTTGGCCGAGGGCTCATTGACATGGTTCGGA...AGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR GCA 90 bp TCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGAGGAGTTGTTTACGTTaGAGACAAGGCCCTGCAGCC +
Preference number: 4 (lower is better)
Translates to: SPRAQGFLGASVWYRDPLRSCLR*RQGPAA
Trigger: GGCTGCAGGGCCTTGTCTGCAACGTAAACAACTCCT...CAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR GCA 90 bp ATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTGATGGGTCCAGAGGATaGTCTGGGCTCAGGAACACG +
Preference number: 4 (lower is better)
Translates to: ISPRAQGFLGASVWYRDPDGSRG*SGLRNT
Trigger: CGTGTTCCTGAGCCCAGAGCATCCTCTGGACCCATC...AGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR GCA 90 bp TTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCTTTGCCACTCAGTGCTCCAGCAGGTCCTaGAGGTACACGAAGCCTCCC +
Preference number: 4 (lower is better)
Translates to: FWEPAYGTEILCLSFATQCSSRS*RYTKPP
Trigger: GGGAGGCTTCGTGTACCTGCAGGACCTGCTGGAGCA...CTGAGTGGCAAAGCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR GCA 90 bp TTTTATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGAACTCGCACAGCTGCCTaGTCCAGCAGGTCCTGCAGG +
Preference number: 4 (lower is better)
Translates to: FYFPQSPRLSGSQRMVQRTRTAA*SSRSCR
Trigger: CCTGCAGGACCTGCTGGAGCAGGCAGCTGTGCGAGT...TCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAATAAAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
CDS-3UTR GCA 90 bp TTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCTTTGCCACTCAGAGCACTCGCACAGCTaGCTGCTCCAGCAGGTCCTG +
Preference number: 4 (lower is better)
Translates to: FLGASVWYRDPLSELCHSEHSHS*LLQQVL
Trigger: CAGGACCTGCTGGAGCAGGCAGCTGTGCGAGTGCTC...TGAGTGGCAAAGCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR GCA 90 bp TTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCTTTGCCACTCACCTCCGCGGGGCCTGTaGCCAAATTGTGCCACTGAG +
Preference number: 4 (lower is better)
Translates to: FLGASVWYRDPLSELCHSPPRGL*PNCATE
Trigger: CTCAGTGGCACAATTTGGGCACAGGCCCCGCGGAGG...TGAGTGGCAAAGCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR GCA 90 bp CCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGACAGTGTGGTTGTCTTaGCAGCCCCGTTGTGACCCA +
Preference number: 4 (lower is better)
Translates to: PEPKAFWEPAYGTEILCLTVWLS*QPRCDP
Trigger: TGGGTCACAACGGGGCTGGCAAGACAACCACACTGT...CAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR GCA 90 bp TTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTAACAGCACATTGTACTaGGGGCAGATGCCCAGGTGG +
Preference number: 4 (lower is better)
Translates to: FPQSPRLSGSQRMVQRSSNSTLY*GQMPRW
Trigger: CCACCTGGGCATCTGCCCGCAGTACAATGTGCTGTT...AGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR GCA 90 bp TTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCAACAGCACATTGTACTaGGGGCAGATGCCCAGGTGG +
Preference number: 4 (lower is better)
Translates to: FPPEPKAFWEPAYGTEILNSTLY*GQMPRW
Trigger: CCACCTGGGCATCTGCCCGCAGTACAATGTGCTGTT...GAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR GCA 90 bp CCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTATCTCCCAAGAGCTCTaGCTCATCCAGGTGGTGAGT +
Preference number: 4 (lower is better)
Translates to: PPEPKAFWEPAYGTEILCISQEL*LIQVVS
Trigger: ACTCACCACCTGGATGAGGCAGAGCTCTTGGGAGAT...ACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR GCA 90 bp TTATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCGCTGTGGAGTGCATGTaGGAAGGTGCAGCTGCGGTC +
Preference number: 4 (lower is better)
Translates to: LFPPEPKAFWEPAYGTEIAVECM*EGAAAV
Trigger: GACCGCAGCTGCACCTTCGCACATGCACTCCACAGC...GATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAATAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR GCA 90 bp CCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCTTTGCTGTGGAGTGCATGTaGGAAGGTGCAGCTGCGGTC +
Preference number: 4 (lower is better)
Translates to: PKAFWEPAYGTEILCLSFAVECM*EGAAAV
Trigger: GACCGCAGCTGCACCTTCGCACATGCACTCCACAGC...AAAGCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR GCA 90 bp TTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCTTTGCCACTCAGAGGCAACACAACCTGTaGAAACAGGCCCCGGCGGCT +
Preference number: 4 (lower is better)
Translates to: FWEPAYGTEILCLSFATQRQHNL*KQAPAA
Trigger: AGCCGCCGGGGCCTGTTTGCACAGGTTGTGTTGCCT...CTGAGTGGCAAAGCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR GCA 90 bp GCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCTTATTCTGGCGTCCAGTTaGCACTGGCCAGGATGCTGG +
Preference number: 4 (lower is better)
Translates to: AQGFLGASVWYRDPLSELILASS*HWPGCW
Trigger: CCAGCATCCTGGCCAGTGGCAACTGGACGCCAGAAT...AAGCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR GCA 90 bp GAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCTGTCCCCTGTCACCATaGGGAAGGTGGATGTCTTCC +
Preference number: 4 (lower is better)
Translates to: EPKAFWEPAYGTEILCLSCPLSP*GRWMSS
Trigger: GGAAGACATCCACCTTCCGCATGGTGACAGGGGACA...GCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR GCA 90 bp AGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCACTCCTCCATGCTGTaGGACGTGAGCACTACGGAG +
Preference number: 4 (lower is better)
Translates to: RAQGFLGASVWYRDPLSEHSSML*DVSTTE
Trigger: CTCCGTAGTGCTCACGTCGCACAGCATGGAGGAGTG...CTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp TCTTTTTATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGATGTCCTGGATGCTGTaGCCCCCGAGCACTGTGCGG +
Preference number: 4 (lower is better)
Translates to: SFYFPQSPRLSGSQRMVQMSWML*PPSTVR
Trigger: CCGCACAGTGCTCGGGGGCCACAGCATCCAGGACAT...CTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAATAAAAAGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 2 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
CDS-3UTR CCA 90 bp TTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCTTTGCCACTCAGCATCCAGCATGTCCTaGATGCTGTGGCCCCCGAGC +
Preference number: 4 (lower is better)
Translates to: FLGASVWYRDPLSELCHSASSMS*MLWPPS
Trigger: GCTCGGGGGCCACAGCATCCAGGACATGCTGGATGC...TGAGTGGCAAAGCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp TCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGAGTGTCAGGAGCTCCTaGGCAAGATCCCTGATAGCA +
Preference number: 4 (lower is better)
Translates to: SPRAQGFLGASVWYRDPLSVRSS*ARSLIA
Trigger: TGCTATCAGGGATCTTGCCCAGGAGCTCCTGACACT...CAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp TCTTTTTATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGGGCCCCCTGGACTGCTaGGTCCCTTGGTACTGCAGA +
Preference number: 4 (lower is better)
Translates to: SFYFPQSPRLSGSQRMVQGPLDC*VPWYCR
Trigger: TCTGCAGTACCAAGGGACCCAGCAGTCCAGGGGGCC...CTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAATAAAAAGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 2 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
CDS-3UTR CCA 90 bp AGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGGCCTCCAACTTCTTCTaGGCTCTGGGTGTCTGCTGC +
Preference number: 4 (lower is better)
Translates to: RAQGFLGASVWYRDPLSEASNFF*ALGVCC
Trigger: GCAGCAGACACCCAGAGCCCAGAAGAAGTTGGAGGC...CTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp GAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCAACCTTGGGATCTTGTaGGGCAGGGGCCAAGACAGA +
Preference number: 4 (lower is better)
Translates to: EPKAFWEPAYGTEILCLSNLGIL*GRGQDR
Trigger: TCTGTCTTGGCCCCTGCCCCACAAGATCCCAAGGTT...GCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp CCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTAACCTTGGGATCTTGTaGGGCAGGGGCCAAGACAGA +
Preference number: 4 (lower is better)
Translates to: PRAQGFLGASVWYRDPLSNLGIL*GRGQDR
Trigger: TCTGTCTTGGCCCCTGCCCCACAAGATCCCAAGGTT...AGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp AGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCTTCCACCAGAACCTTaGGATCTTGTGGGGCAGGGG +
Preference number: 4 (lower is better)
Translates to: RAQGFLGASVWYRDPLSELPPEP*DLVGQG
Trigger: CCCCTGCCCCACAAGATCCCAAGGTTCTGGTGGAAG...CTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp TATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCCTTCCACCAGAACCTTaGGATCTTGTGGGGCAGGGG +
Preference number: 4 (lower is better)
Translates to: YFPQSPRLSGSQRMVQRSLPPEP*DLVGQG
Trigger: CCCCTGCCCCACAAGATCCCAAGGTTCTGGTGGAAG...GGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAATA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp TCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTTGGTTTGTACATCATaGCCCAGGATGGAGGCCGAG +
Preference number: 4 (lower is better)
Translates to: SPRAQGFLGASVWYRDPLLVCTS*PRMEAE
Trigger: CTCGGCCTCCATCCTGGGCCATGATGTACAAACCAA...CAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp GCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCTTCCAGGTGGGGCCGGATaGCTGCCATGTTGGTTTGTA +
Preference number: 4 (lower is better)
Translates to: AQGFLGASVWYRDPLSELPGGAG*LPCWFV
Trigger: TACAAACCAACATGGCAGCCATCCGGCCCCACCTGG...AAGCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp CCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCCATCCAGGTGGTGAGTaGAGAGAATCAGTGTCCGAC +
Preference number: 4 (lower is better)
Translates to: PQSPRLSGSQRMVQRSSVHPGGE*RESVSD
Trigger: GTCGGACACTGATTCTCTCCACTCACCACCTGGATG...GACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp TTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCTTTGCCACTCAGAGCCACCTGCCACCATaGCCACGCGATCTCCCAAGA +
Preference number: 4 (lower is better)
Translates to: FWEPAYGTEILCLSFATQSHLPP*PRDLPR
Trigger: TCTTGGGAGATCGCGTGGCCATGGTGGCAGGTGGCT...CTGAGTGGCAAAGCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp CCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTAGATCTCCTCCAGGTTaGTGTCCGAGATCCCGTAGC +
Preference number: 4 (lower is better)
Translates to: PRAQGFLGASVWYRDPLSRSPPG*CPRSRS
Trigger: GCTACGGGATCTCGGACACCAACCTGGAGGAGATCT...AGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp TTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGCAGGGGTGGGTACTaGCCAAAAGGAGGCACAATG +
Preference number: 4 (lower is better)
Translates to: FPPEPKAFWEPAYGTEILCRGGY*PKGGTM
Trigger: CATTGTGCCTCCTTTTGGCCAGTACCCACCCCTGCA...GAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp TTATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCGCGTCCAGTTGCCACTaGCCAGGATGCTGGCCACAT +
Preference number: 4 (lower is better)
Translates to: LFPPEPKAFWEPAYGTEIASSCH*PGCWPH
Trigger: ATGTGGCCAGCATCCTGGCCAGTGGCAACTGGACGC...GATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAATAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp AGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGTGGGGATGGAGATTCTaGCGTCCAGTTGCCACTGGC +
Preference number: 4 (lower is better)
Translates to: RAQGFLGASVWYRDPLSEWGWRF*RPVATG
Trigger: GCCAGTGGCAACTGGACGCCAGAATCTCCATCCCCA...CTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp CCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTACTGCATTGGCAAGCTaGGGATGGAGATTCTGGCGT +
Preference number: 4 (lower is better)
Translates to: PPEPKAFWEPAYGTEILCTALAS*GWRFWR
Trigger: ACGCCAGAATCTCCATCCCCAGCTTGCCAATGCAGT...ACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp TTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCTTTGCCACTCACGGCCAGTGAGGTTCTaGACCACCTCCCCCAAGCCA +
Preference number: 4 (lower is better)
Translates to: FLGASVWYRDPLSELCHSRPVRF*TTSPKP
Trigger: TGGCTTGGGGGAGGTGGTCCAGAACCTCACTGGCCG...TGAGTGGCAAAGCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp CCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGCTCGGCGCACCAGGCTaGGGTATGTCTTCACCAAAA +
Preference number: 4 (lower is better)
Translates to: PEPKAFWEPAYGTEILCLLGAPG*GMSSPK
Trigger: TTTTGGTGAAGACATACCCCAGCCTGGTGCGCCGAG...CAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp CCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTCTCGGCGCACCAGGCTaGGGTATGTCTTCACCAAAA +
Preference number: 4 (lower is better)
Translates to: PRAQGFLGASVWYRDPLSLGAPG*GMSSPK
Trigger: TTTTGGTGAAGACATACCCCAGCCTGGTGCGCCGAG...AGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp CCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTTCACAAAGGCCACCATaGCATGCCAGCCCTTGTTGT +
Preference number: 4 (lower is better)
Translates to: PPEPKAFWEPAYGTEILCSQRPP*HASPCC
Trigger: ACAACAAGGGCTGGCATGCCATGGTGGCCTTTGTGA...ACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp TCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGCAAAGGCATCTGCCATaGCCTGGTTCCGAACCATGT +
Preference number: 4 (lower is better)
Translates to: SPRAQGFLGASVWYRDPLQRHLP*PGSEPC
Trigger: ACATGGTTCGGAACCAGGCCATGGCAGATGCCTTTG...CAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp GCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCTTGTCCCTGGGCCATCATaGCCAGGAGGTTCTTGCCAA +
Preference number: 4 (lower is better)
Translates to: AQGFLGASVWYRDPLSELVPGPS*PGGSCQ
Trigger: TTGGCAAGAACCTCCTGGCCATGATGGCCCAGGGAC...AAGCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp AGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGGTCCCTGGGCCATCATaGCCAGGAGGTTCTTGCCAA +
Preference number: 4 (lower is better)
Translates to: RAQGFLGASVWYRDPLSEVPGPS*PGGSCQ
Trigger: TTGGCAAGAACCTCCTGGCCATGATGGCCCAGGGAC...CTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp CCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCTTTAGGAACAGAGGTCCCTaGGCCATCATGGCCAGGAGG +
Preference number: 4 (lower is better)
Translates to: PKAFWEPAYGTEILCLSFRNRGP*AIMARR
Trigger: CCTCCTGGCCATGATGGCCCAGGGACCTCTGTTCCT...AAAGCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp CAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCTTTGCCAGGCGATCCACAGCTaGGTTCCTCTGCCCACGGTA +
Preference number: 4 (lower is better)
Translates to: QGFLGASVWYRDPLSELCQAIHS*VPLPTV
Trigger: TACCGTGGGCAGAGGAACCCAGCTGTGGATCGCCTG...GCAAAGCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp AGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGTCACCATGCGGAAGGTaGATGTCTTCCCTGCCCCGT +
Preference number: 4 (lower is better)
Translates to: RAQGFLGASVWYRDPLSESPCGR*MSSLPR
Trigger: ACGGGGCAGGGAAGACATCCACCTTCCGCATGGTGA...CTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp ATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTTCACCATGCGGAAGGTaGATGTCTTCCCTGCCCCGT +
Preference number: 4 (lower is better)
Translates to: ISPRAQGFLGASVWYRDPSPCGR*MSSLPR
Trigger: ACGGGGCAGGGAAGACATCCACCTTCCGCATGGTGA...AGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp GCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCTTCTGCTTCACCACTGCTaGGCAGTGTGTCCCCTGTCA +
Preference number: 4 (lower is better)
Translates to: AQGFLGASVWYRDPLSELLLHHC*AVCPLS
Trigger: TGACAGGGGACACACTGCCCAGCAGTGGTGAAGCAG...AAGCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp GCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCTTCTTAGAGTCAGTGTGTaGCCAGCCCCGAACCTGCCT +
Preference number: 4 (lower is better)
Translates to: AQGFLGASVWYRDPLSELLRVSV*PAPNLP
Trigger: AGGCAGGTTCGGGGCTGGCCACACACTGACTCTAAG...AAGCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp CCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCACACCTCCTCCAGAGTaGTCTGGCTCACAGAGAAGT +
Preference number: 4 (lower is better)
Translates to: PQSPRLSGSQRMVQRSSVTPPPE*SGSQRS
Trigger: ACTTCTCTGTGAGCCAGACCACTCTGGAGGAGGTGT...GACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp CCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGCTGCCGGCCAGGTTTaGAAACCTCCTCTTCTTCAG +
Preference number: 4 (lower is better)
Translates to: PRAQGFLGASVWYRDPLSAAGQV*KPPLLQ
Trigger: CTGAAGAAGAGGAGGTTTCCAAACCTGGCCGGCAGC...AGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR TCA 90 bp TATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCAAGGTCTGGTTCACCTaGGCCATGAGCTTCCGAGTG +
Preference number: 4 (lower is better)
Translates to: YFPQSPRLSGSQRMVQRSKVWFT*AMSFRV
Trigger: CACTCGGAAGCTCATGGCTCAGGTGAACCAGACCTT...GGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAATA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR TCA 90 bp TTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCACATCCAGAAGCCTCTaGAGCATGGCCACGTTGGTA +
Preference number: 4 (lower is better)
Translates to: FPPEPKAFWEPAYGTEILTSRSL*SMATLV
Trigger: TACCAACGTGGCCATGCTTCAGAGGCTTCTGGATGT...GAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR TCA 90 bp CCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGACATCCAGAAGCCTCTaGAGCATGGCCACGTTGGTA +
Preference number: 4 (lower is better)
Translates to: PEPKAFWEPAYGTEILCLTSRSL*SMATLV
Trigger: TACCAACGTGGCCATGCTTCAGAGGCTTCTGGATGT...CAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR TCA 90 bp CCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCTTTCACAAGAGCTTCCTCTaGGGGCACAGCCTCCAGCTT +
Preference number: 4 (lower is better)
Translates to: PKAFWEPAYGTEILCLSFHKSFL*GHSLQL
Trigger: AAGCTGGAGGCTGTGCCCTCAGAGGAAGCTCTTGTG...AAAGCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR TCA 90 bp GAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCTGGAGAAGAAGGCGCTaGGCAGAAAACTCTGAGCGA +
Preference number: 4 (lower is better)
Translates to: EPKAFWEPAYGTEILCLSWRRRR*AENSER
Trigger: TCGCTCAGAGTTTTCTGCTCAGCGCCTTCTTCTCCA...GCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR TCA 90 bp AGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCGTAGAAGTCAAGGTTaGGTCCTTGCAGGGCTGGCT +
Preference number: 4 (lower is better)
Translates to: RAQGFLGASVWYRDPLSERRSQG*VLAGLA
Trigger: AGCCAGCCCTGCAAGGACTCAACCTTGACTTCTACG...CTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR TCA 90 bp TATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCCGTAGAAGTCAAGGTTaGGTCCTTGCAGGGCTGGCT +
Preference number: 4 (lower is better)
Translates to: YFPQSPRLSGSQRMVQRSRRSQG*VLAGLA
Trigger: AGCCAGCCCTGCAAGGACTCAACCTTGACTTCTACG...GGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAATA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR TCA 90 bp TTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCTTTGCCACTCAAGGAGCTCCAGCTGCTaGTCCAGCTCCTGGAAGACC +
Preference number: 4 (lower is better)
Translates to: FLGASVWYRDPLSELCHSRSSSC*SSSWKT
Trigger: GGTCTTCCAGGAGCTGGATCAGCAGCTGGAGCTCCT...TGAGTGGCAAAGCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR TCA 90 bp TTTTATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGAAGATCCCGTAGCCTGTaGGACCCAGGAGCTCCAGCT +
Preference number: 4 (lower is better)
Translates to: FYFPQSPRLSGSQRMVQRRSRSL*DPGAPA
Trigger: AGCTGGAGCTCCTGGGTCTCACAGGCTACGGGATCT...TCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAATAAAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
CDS-3UTR TCA 90 bp AGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGGCTGGCTGGGACAAATaGCATGGCGAAGACCACACA +
Preference number: 4 (lower is better)
Translates to: RAQGFLGASVWYRDPLSEAGWDK*HGEDHT
Trigger: TGTGTGGTCTTCGCCATGTCATTTGTCCCAGCCAGC...CTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR TCA 90 bp AGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGTCCGAACCATGTCAATaGGCCCTCGGCCAAGGCAAA +
Preference number: 4 (lower is better)
Translates to: RAQGFLGASVWYRDPLSESEPCQ*ALGQGK
Trigger: TTTGCCTTGGCCGAGGGCTCATTGACATGGTTCGGA...CTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR TCA 90 bp TCTTTTTATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGACCCGCTCACGCTCTTaGGCCACATCCTCATCCTCC +
Preference number: 4 (lower is better)
Translates to: SFYFPQSPRLSGSQRMVQTRSRS*ATSSSS
Trigger: GGAGGATGAGGATGTGGCTCAAGAGCGTGAGCGGGT...CTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAATAAAAAGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
CDS-3UTR TCA 90 bp TTATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCCTTGGTCAAGTCCCTaGGGACTAGCACATCCCCCT +
Preference number: 4 (lower is better)
Translates to: LFPPEPKAFWEPAYGTEIPWSSP*GLAHPP
Trigger: AGGGGGATGTGCTAGTCCTCAGGGACTTGACCAAGG...GATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAATAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR TCA 90 bp TTATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTGCCTTTGAGATGCTaGGAGCTTCCCAGACAGCGG +
Preference number: 4 (lower is better)
Translates to: LFPPEPKAFWEPAYGTEILPLRC*ELPRQR
Trigger: CCGCTGTCTGGGAAGCTCTCAGCATCTCAAAGGCAG...GATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAATAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR TCA 90 bp CCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCTTTCCCCGAACCTGCCTTTaGGATGCTGAGAGCTTCCCA +
Preference number: 4 (lower is better)
Translates to: PKAFWEPAYGTEILCLSFPRTCL*DAESFP
Trigger: TGGGAAGCTCTCAGCATCTCAAAGGCAGGTTCGGGG...AAAGCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR GCA 90 bp CCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCTTTACTCTCCTGTGGTCGTaGTCCACCTCCAACTGCCCT +
Preference number: 4 (lower is better)
Translates to: PKAFWEPAYGTEILCLSFTLLWS*STSNCP
Trigger: AGGGCAGTTGGAGGTGGAGCACGACCACAGGAGAGT...AAAGCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR GCA 90 bp TTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTCCAGGGATGCCCTTTaGAGGATCTTCTCCAGAAGC +
Preference number: 4 (lower is better)
Translates to: FPPEPKAFWEPAYGTEILSRDAL*RIFSRS
Trigger: GCTTCTGGAGAAGATCCTGCAAAGGGCATCCCTGGA...GAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR GCA 90 bp GCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCTTACAGTGTGGTTGTCTTaGCAGCCCCGTTGTGACCCA +
Preference number: 4 (lower is better)
Translates to: AQGFLGASVWYRDPLSELTVWLS*QPRCDP
Trigger: TGGGTCACAACGGGGCTGGCAAGACAACCACACTGT...AAGCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR GCA 90 bp TTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTATCTCCCAAGAGCTCTaGCTCATCCAGGTGGTGAGT +
Preference number: 4 (lower is better)
Translates to: FPQSPRLSGSQRMVQRSSISQEL*LIQVVS
Trigger: ACTCACCACCTGGATGAGGCAGAGCTCTTGGGAGAT...AGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR GCA 90 bp TCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGCTGTGTCTGACGTCCTaGCATTGCCATCTGACTTCT +
Preference number: 4 (lower is better)
Translates to: SPRAQGFLGASVWYRDPLLCLTS*HCHLTS
Trigger: AGAAGTCAGATGGCAATGGCAGGACGTCAGACACAG...CAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR GCA 90 bp AGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGTCCCCACCTTCTCTGTaGGCATCCTCCACCACCTTT +
Preference number: 4 (lower is better)
Translates to: RAQGFLGASVWYRDPLSESPPSL*ASSTTF
Trigger: AAAGGTGGTGGAGGATGCGCACAGAGAAGGTGGGGA...CTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR GCA 90 bp GCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCTTTCCCCACCTTCTCTGTaGGCATCCTCCACCACCTTT +
Preference number: 4 (lower is better)
Translates to: AQGFLGASVWYRDPLSELSPPSL*ASSTTF
Trigger: AAAGGTGGTGGAGGATGCGCACAGAGAAGGTGGGGA...AAGCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR GCA 90 bp TCTTTTTATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGATAGCAGGGCTGAGCTaGAGGGGTGGGTACTGGCCA +
Preference number: 4 (lower is better)
Translates to: SFYFPQSPRLSGSQRMVQIAGLS*RGGYWP
Trigger: TGGCCAGTACCCACCCCTGCAGCTCAGCCCTGCTAT...CTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAATAAAAAGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
CDS-3UTR GCA 90 bp TTTTATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGAATAGCAGGGCTGAGCTaGAGGGGTGGGTACTGGCCA +
Preference number: 4 (lower is better)
Translates to: FYFPQSPRLSGSQRMVQRIAGLS*RGGYWP
Trigger: TGGCCAGTACCCACCCCTGCAGCTCAGCCCTGCTAT...TCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAATAAAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
CDS-3UTR GCA 90 bp CCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGCTGGCATCTTTGTCCTaGATACTGGGTTCCTGCAGC +
Preference number: 4 (lower is better)
Translates to: PEPKAFWEPAYGTEILCLLASLS*ILGSCS
Trigger: GCTGCAGGAACCCAGTATGCAGGACAAAGATGCCAG...CAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR GCA 90 bp CCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCTTTATTCTGGCGTCCAGTTaGCACTGGCCAGGATGCTGG +
Preference number: 4 (lower is better)
Translates to: PKAFWEPAYGTEILCLSFILASS*HWPGCW
Trigger: CCAGCATCCTGGCCAGTGGCAACTGGACGCCAGAAT...AAAGCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR GCA 90 bp TTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTAAGGCCACCATGGCATaGCAGCCCTTGTTGTTGAAC +
Preference number: 4 (lower is better)
Translates to: FPQSPRLSGSQRMVQRSSKATMA*QPLLLN
Trigger: GTTCAACAACAAGGGCTGGCATGCCATGGTGGCCTT...AGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR GCA 90 bp TTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCAAGGCCACCATGGCATaGCAGCCCTTGTTGTTGAAC +
Preference number: 4 (lower is better)
Translates to: FPPEPKAFWEPAYGTEILKATMA*QPLLLN
Trigger: GTTCAACAACAAGGGCTGGCATGCCATGGTGGCCTT...GAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR GCA 90 bp CCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTAAGGCCACCATGGCATaGCAGCCCTTGTTGTTGAAC +
Preference number: 4 (lower is better)
Translates to: PRAQGFLGASVWYRDPLSKATMA*QPLLLN
Trigger: GTTCAACAACAAGGGCTGGCATGCCATGGTGGCCTT...AGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR GCA 90 bp TATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCGCACCACATAGGCCGTaGTGGGCACTGAGAAGAAGA +
Preference number: 4 (lower is better)
Translates to: YFPQSPRLSGSQRMVQRSAPHRP*WALRRR
Trigger: TCTTCTTCTCAGTGCCCAGCACGGCCTATGTGGTGC...GGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAATA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR GCA 90 bp AGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGGCACCACATAGGCCGTaGTGGGCACTGAGAAGAAGA +
Preference number: 4 (lower is better)
Translates to: RAQGFLGASVWYRDPLSEAPHRP*WALRRR
Trigger: TCTTCTTCTCAGTGCCCAGCACGGCCTATGTGGTGC...CTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR GCA 90 bp TTTTATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGAGGTGGATGTCTTCCCTaGCCCGTTGACACCCAGCAG +
Preference number: 4 (lower is better)
Translates to: FYFPQSPRLSGSQRMVQRGGCLP*PVDTQQ
Trigger: CTGCTGGGTGTCAACGGGGCAGGGAAGACATCCACC...TCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAATAAAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
CDS-3UTR GCA 90 bp GCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCTTTGTCCCCTGTCACCATaGGGAAGGTGGATGTCTTCC +
Preference number: 4 (lower is better)
Translates to: AQGFLGASVWYRDPLSELCPLSP*GRWMSS
Trigger: GGAAGACATCCACCTTCCGCATGGTGACAGGGGACA...AAGCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR GCA 90 bp TTATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCACTCCTCCATGCTGTaGGACGTGAGCACTACGGAG +
Preference number: 4 (lower is better)
Translates to: LFPPEPKAFWEPAYGTEIHSSML*DVSTTE
Trigger: CTCCGTAGTGCTCACGTCGCACAGCATGGAGGAGTG...GATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAATAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR GCA 90 bp CCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCTTTCACTCCTCCATGCTGTaGGACGTGAGCACTACGGAG +
Preference number: 4 (lower is better)
Translates to: PKAFWEPAYGTEILCLSFHSSML*DVSTTE
Trigger: CTCCGTAGTGCTCACGTCGCACAGCATGGAGGAGTG...AAAGCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR GCA 90 bp TATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCACACGTTTGGGATGCTaGCGGCCAGGTTTGGAAACC +
Preference number: 4 (lower is better)
Translates to: YFPQSPRLSGSQRMVQRSTRLGC*RPGLET
Trigger: GGTTTCCAAACCTGGCCGGCAGCATCCCAAACGTGT...GGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAATA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR GCA 90 bp ATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTACACGTTTGGGATGCTaGCGGCCAGGTTTGGAAACC +
Preference number: 4 (lower is better)
Translates to: ISPRAQGFLGASVWYRDPTRLGC*RPGLET
Trigger: GGTTTCCAAACCTGGCCGGCAGCATCCCAAACGTGT...AGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp AGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGTTTCCCGAGGATCAATaGCTTCAGGCGCCTCCAGAG +
Preference number: 4 (lower is better)
Translates to: RAQGFLGASVWYRDPLSEFPEDQ*LQAPPE
Trigger: CTCTGGAGGCGCCTGAAGCCATTGATCCTCGGGAAA...CTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp GAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCATCTTGAATCGTAGGTaGCCAGGACTCAGGGCTGGA +
Preference number: 4 (lower is better)
Translates to: EPKAFWEPAYGTEILCLSILNRR*PGLRAG
Trigger: TCCAGCCCTGAGTCCTGGCCACCTACGATTCAAGAT...GCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp TTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTATCTTGAATCGTAGGTaGCCAGGACTCAGGGCTGGA +
Preference number: 4 (lower is better)
Translates to: FPQSPRLSGSQRMVQRSSILNRR*PGLRAG
Trigger: TCCAGCCCTGAGTCCTGGCCACCTACGATTCAAGAT...AGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp CCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCGAGCCACTACTGGGTaGGAAGAGACCACTCAAAAT +
Preference number: 4 (lower is better)
Translates to: PPEPKAFWEPAYGTEILCRATTG*EETTQN
Trigger: ATTTTGAGTGGTCTCTTCCCACCCAGTAGTGGCTCG...ACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp TTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCTTTGCCACTCAGCCAGGTGGGGCCGGATaGCTGCCATGTTGGTTTGTA +
Preference number: 4 (lower is better)
Translates to: FWEPAYGTEILCLSFATQPGGAG*LPCWFV
Trigger: TACAAACCAACATGGCAGCCATCCGGCCCCACCTGG...CTGAGTGGCAAAGCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp TTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCTTTGCCACTCAGATTCCACCAGAGAGGTaGCGTGTCTGTGTGTCCCGC +
Preference number: 4 (lower is better)
Translates to: FWEPAYGTEILCLSFATQIPPER*RVCVSR
Trigger: GCGGGACACACAGACACGCCACCTCTCTGGTGGAAT...CTGAGTGGCAAAGCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp CCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGCATCCAGGTGGTGAGTaGAGAGAATCAGTGTCCGAC +
Preference number: 4 (lower is better)
Translates to: PEPKAFWEPAYGTEILCLHPGGE*RESVSD
Trigger: GTCGGACACTGATTCTCTCCACTCACCACCTGGATG...CAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp AGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGAGATCTCCTCCAGGTTaGTGTCCGAGATCCCGTAGC +
Preference number: 4 (lower is better)
Translates to: RAQGFLGASVWYRDPLSERSPPG*CPRSRS
Trigger: GCTACGGGATCTCGGACACCAACCTGGAGGAGATCT...CTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp GCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCTTAGCAGAAAACGCTTGTaGAGCAGAGCCCGGAGCTGT +
Preference number: 4 (lower is better)
Translates to: AQGFLGASVWYRDPLSELSRKRL*SRARSC
Trigger: ACAGCTCCGGGCTCTGCTCCACAAGCGTTTTCTGCT...AAGCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp CCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGACTGCATTGGCAAGCTaGGGATGGAGATTCTGGCGT +
Preference number: 4 (lower is better)
Translates to: PEPKAFWEPAYGTEILCLTALAS*GWRFWR
Trigger: ACGCCAGAATCTCCATCCCCAGCTTGCCAATGCAGT...CAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp TTCTTTTTATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACACGGCCAGTGAGGTTCTaGACCACCTCCCCCAAGCCA +
Preference number: 4 (lower is better)
Translates to: FFLFPPEPKAFWEPAYGTRPVRF*TTSPKP
Trigger: TGGCTTGGGGGAGGTGGTCCAGAACCTCACTGGCCG...TGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAATAAAAAGAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 2 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
CDS-3UTR CCA 90 bp AGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCTCGGCGCACCAGGCTaGGGTATGTCTTCACCAAAA +
Preference number: 4 (lower is better)
Translates to: RAQGFLGASVWYRDPLSELGAPG*GMSSPK
Trigger: TTTTGGTGAAGACATACCCCAGCCTGGTGCGCCGAG...CTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp AGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCATCCACCCACTTCTTaGTCTTTAGGCCTCGGCGCA +
Preference number: 4 (lower is better)
Translates to: RAQGFLGASVWYRDPLSEHPPTS*SLGLGA
Trigger: TGCGCCGAGGCCTAAAGACCAAGAAGTGGGTGGATG...CTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp AGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCCACATAGGCCGTGCTaGGCACTGAGAAGAAGAAGG +
Preference number: 4 (lower is better)
Translates to: RAQGFLGASVWYRDPLSEPHRPC*ALRRRR
Trigger: CCTTCTTCTTCTCAGTGCCCAGCACGGCCTATGTGG...CTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp CCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGGCATCTGCCATGGCCTaGTTCCGAACCATGTCAATG +
Preference number: 4 (lower is better)
Translates to: PEPKAFWEPAYGTEILCLASAMA*FRTMSM
Trigger: CATTGACATGGTTCGGAACCAGGCCATGGCAGATGC...CAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp CCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGCAAAGGCATCTGCCATaGCCTGGTTCCGAACCATGT +
Preference number: 4 (lower is better)
Translates to: PEPKAFWEPAYGTEILCLQRHLP*PGSEPC
Trigger: ACATGGTTCGGAACCAGGCCATGGCAGATGCCTTTG...CAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp TTTTATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGAAGGAACAGAGGTCCCTaGGCCATCATGGCCAGGAGG +
Preference number: 4 (lower is better)
Translates to: FYFPQSPRLSGSQRMVQRRNRGP*AIMARR
Trigger: CCTCCTGGCCATGATGGCCCAGGGACCTCTGTTCCT...TCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAATAAAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
CDS-3UTR CCA 90 bp TCTTTTTATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGCAGGCGATCCACAGCTaGGTTCCTCTGCCCACGGTA +
Preference number: 4 (lower is better)
Translates to: SFYFPQSPRLSGSQRMVQQAIHS*VPLPTV
Trigger: TACCGTGGGCAGAGGAACCCAGCTGTGGATCGCCTG...CTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAATAAAAAGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
CDS-3UTR CCA 90 bp TTATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTTAGAGTCAGTGTGTaGCCAGCCCCGAACCTGCCT +
Preference number: 4 (lower is better)
Translates to: LFPPEPKAFWEPAYGTEILRVSV*PAPNLP
Trigger: AGGCAGGTTCGGGGCTGGCCACACACTGACTCTAAG...GATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAATAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp AGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGTCCTCCAGAGTGGTCTaGCTCACAGAGAAGTCCTCC +
Preference number: 4 (lower is better)
Translates to: RAQGFLGASVWYRDPLSESSRVV*LTEKSS
Trigger: GGAGGACTTCTCTGTGAGCCAGACCACTCTGGAGGA...CTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp TTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTACACCTCCTCCAGAGTaGTCTGGCTCACAGAGAAGT +
Preference number: 4 (lower is better)
Translates to: FPQSPRLSGSQRMVQRSSTPPPE*SGSQRS
Trigger: ACTTCTCTGTGAGCCAGACCACTCTGGAGGAGGTGT...AGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp AGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGGCTGCCGGCCAGGTTTaGAAACCTCCTCTTCTTCAG +
Preference number: 4 (lower is better)
Translates to: RAQGFLGASVWYRDPLSEAAGQV*KPPLLQ
Trigger: CTGAAGAAGAGGAGGTTTCCAAACCTGGCCGGCAGC...CTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR TCA 90 bp TCTTTTTATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGACTCAGGGCTGGAGATaGCAGTTCGGATGGGTCCAG +
Preference number: 4 (lower is better)
Translates to: SFYFPQSPRLSGSQRMVQTQGWR*QFGWVQ
Trigger: CTGGACCCATCCGAACTGTCATCTCCAGCCCTGAGT...CTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAATAAAAAGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
CDS-3UTR TCA 90 bp TATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTGGAGAAGAAGGCGCTaGGCAGAAAACTCTGAGCGA +
Preference number: 4 (lower is better)
Translates to: YFPQSPRLSGSQRMVQRSWRRRR*AENSER
Trigger: TCGCTCAGAGTTTTCTGCTCAGCGCCTTCTTCTCCA...GGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAATA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR TCA 90 bp TTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCTTTGCCACTCAGGCTGGCTGGGACAAATaGCATGGCGAAGACCACACA +
Preference number: 4 (lower is better)
Translates to: FWEPAYGTEILCLSFATQAGWDK*HGEDHT
Trigger: TGTGTGGTCTTCGCCATGTCATTTGTCCCAGCCAGC...CTGAGTGGCAAAGCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR TCA 90 bp TCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGGAAAGGCTAGGAAGATaGACACCACTATGCACACTG +
Preference number: 4 (lower is better)
Translates to: SPRAQGFLGASVWYRDPLERLGR*TPLCTL
Trigger: CAGTGTGCATAGTGGTGTTCATCTTCCTAGCCTTTC...CAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR TCA 90 bp CCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTCAGCAGTCTTGGTTTTaGTTGTGGCAGGAGACGGTT +
Preference number: 4 (lower is better)
Translates to: PRAQGFLGASVWYRDPLSQQSWF*LWQETV
Trigger: AACCGTCTCCTGCCACAATCAAAACCAAGACTGCTG...AGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR TCA 90 bp TTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCTTTGCCACTCACTGCCTTTGAGATGCTaGGAGCTTCCCAGACAGCGG +
Preference number: 4 (lower is better)
Translates to: FLGASVWYRDPLSELCHSLPLRC*ELPRQR
Trigger: CCGCTGTCTGGGAAGCTCTCAGCATCTCAAAGGCAG...TGAGTGGCAAAGCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR TCA 90 bp TCTTTTTATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGCCCCGAACCTGCCTTTaGGATGCTGAGAGCTTCCCA +
Preference number: 4 (lower is better)
Translates to: SFYFPQSPRLSGSQRMVQPRTCL*DAESFP
Trigger: TGGGAAGCTCTCAGCATCTCAAAGGCAGGTTCGGGG...CTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAATAAAAAGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
CDS-3UTR GCA 90 bp ATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTAGGAGTTGTTTACGTTaGAGACAAGGCCCTGCAGCC +
Preference number: 4 (lower is better)
Translates to: ISPRAQGFLGASVWYRDPRSCLR*RQGPAA
Trigger: GGCTGCAGGGCCTTGTCTGCAACGTAAACAACTCCT...AGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR GCA 90 bp TATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCAGGAGTTGTTTACGTTaGAGACAAGGCCCTGCAGCC +
Preference number: 4 (lower is better)
Translates to: YFPQSPRLSGSQRMVQRSRSCLR*RQGPAA
Trigger: GGCTGCAGGGCCTTGTCTGCAACGTAAACAACTCCT...GGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAATA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR GCA 90 bp TTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCTTTGCCACTCAACTCTCCTGTGGTCGTaGTCCACCTCCAACTGCCCT +
Preference number: 4 (lower is better)
Translates to: FLGASVWYRDPLSELCHSTLLWS*STSNCP
Trigger: AGGGCAGTTGGAGGTGGAGCACGACCACAGGAGAGT...TGAGTGGCAAAGCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR GCA 90 bp ATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTTCCAGGGATGCCCTTTaGAGGATCTTCTCCAGAAGC +
Preference number: 4 (lower is better)
Translates to: ISPRAQGFLGASVWYRDPSRDAL*RIFSRS
Trigger: GCTTCTGGAGAAGATCCTGCAAAGGGCATCCCTGGA...AGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR GCA 90 bp GCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCTTTCCAGGGATGCCCTTTaGAGGATCTTCTCCAGAAGC +
Preference number: 4 (lower is better)
Translates to: AQGFLGASVWYRDPLSELSRDAL*RIFSRS
Trigger: GCTTCTGGAGAAGATCCTGCAAAGGGCATCCCTGGA...AAGCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR GCA 90 bp TCTAGTTTCTTTTTATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGCAGGTAGAGACCTGTaGGGGAGTTCCCGCCACCGA +
Preference number: 4 (lower is better)
Translates to: SSFFLFPPEPKAFWEPAYAGRDL*GSSRHR
Trigger: TCGGTGGCGGGAACTCCCGCACAGGTCTCTACCTGC...ATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAATAAAAAGAAACTAGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
CDS-3UTR GCA 90 bp TTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCTTTGCCACTCACCTTGCAGGGCTGGCTaGGGACAGCCACGAAAATGT +
Preference number: 4 (lower is better)
Translates to: FLGASVWYRDPLSELCHSPCRAG*GQPRKC
Trigger: ACATTTTCGTGGCTGTCCGCAGCCAGCCCTGCAAGG...TGAGTGGCAAAGCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR GCA 90 bp TCTTTTTATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGCCTTGCAGGGCTGGCTaGGGACAGCCACGAAAATGT +
Preference number: 4 (lower is better)
Translates to: SFYFPQSPRLSGSQRMVQPCRAG*GQPRKC
Trigger: ACATTTTCGTGGCTGTCCGCAGCCAGCCCTGCAAGG...CTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAATAAAAAGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
CDS-3UTR GCA 90 bp TTATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCAACAGCACATTGTACTaGGGGCAGATGCCCAGGTGG +
Preference number: 4 (lower is better)
Translates to: LFPPEPKAFWEPAYGTEINSTLY*GQMPRW
Trigger: CCACCTGGGCATCTGCCCGCAGTACAATGTGCTGTT...GATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAATAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR GCA 90 bp ATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTATCTCCCAAGAGCTCTaGCTCATCCAGGTGGTGAGT +
Preference number: 4 (lower is better)
Translates to: ISPRAQGFLGASVWYRDPISQEL*LIQVVS
Trigger: ACTCACCACCTGGATGAGGCAGAGCTCTTGGGAGAT...AGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR GCA 90 bp TTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCCTGTGTCTGACGTCCTaGCATTGCCATCTGACTTCT +
Preference number: 4 (lower is better)
Translates to: FPPEPKAFWEPAYGTEILLCLTS*HCHLTS
Trigger: AGAAGTCAGATGGCAATGGCAGGACGTCAGACACAG...GAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR GCA 90 bp CCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCTTTTCCCCACCTTCTCTGTaGGCATCCTCCACCACCTTT +
Preference number: 4 (lower is better)
Translates to: PKAFWEPAYGTEILCLSFSPPSL*ASSTTF
Trigger: AAAGGTGGTGGAGGATGCGCACAGAGAAGGTGGGGA...AAAGCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR GCA 90 bp ATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGGCATCTTTGTCCTaGATACTGGGTTCCTGCAGC +
Preference number: 4 (lower is better)
Translates to: ISPRAQGFLGASVWYRDPLASLS*ILGSCS
Trigger: GCTGCAGGAACCCAGTATGCAGGACAAAGATGCCAG...AGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR GCA 90 bp TTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCTTTGCCACTCAGGCACCACATAGGCCGTaGTGGGCACTGAGAAGAAGA +
Preference number: 4 (lower is better)
Translates to: FWEPAYGTEILCLSFATQAPHRP*WALRRR
Trigger: TCTTCTTCTCAGTGCCCAGCACGGCCTATGTGGTGC...CTGAGTGGCAAAGCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp TATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCATCTTGAATCGTAGGTaGCCAGGACTCAGGGCTGGA +
Preference number: 4 (lower is better)
Translates to: YFPQSPRLSGSQRMVQRSILNRR*PGLRAG
Trigger: TCCAGCCCTGAGTCCTGGCCACCTACGATTCAAGAT...GGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAATA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp GAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCTCAAAATGGACAGTGTaGTTGTCTTGCCAGCCCCGT +
Preference number: 4 (lower is better)
Translates to: EPKAFWEPAYGTEILCLSSKWTV*LSCQPR
Trigger: ACGGGGCTGGCAAGACAACCACACTGTCCATTTTGA...GCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp TTTTATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGAAGGCCGAGCCACTACTaGGTGGGAAGAGACCACTCA +
Preference number: 4 (lower is better)
Translates to: FYFPQSPRLSGSQRMVQRRPSHY*VGRDHS
Trigger: TGAGTGGTCTCTTCCCACCCAGTAGTGGCTCGGCCT...TCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAATAAAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
CDS-3UTR CCA 90 bp AGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGACTTCTTTTCCCGTCTaGGGTCCTCACTGTCTCCCT +
Preference number: 4 (lower is better)
Translates to: RAQGFLGASVWYRDPLSETSFPV*GPHCLP
Trigger: AGGGAGACAGTGAGGACCCCAGACGGGAAAAGAAGT...CTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp CAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCTTTGCAGATCTCCTCCAGGTTaGTGTCCGAGATCCCGTAGC +
Preference number: 4 (lower is better)
Translates to: QGFLGASVWYRDPLSELCRSPPG*CPRSRS
Trigger: GCTACGGGATCTCGGACACCAACCTGGAGGAGATCT...GCAAAGCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp CCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCTTTAGCAGAAAACGCTTGTaGAGCAGAGCCCGGAGCTGT +
Preference number: 4 (lower is better)
Translates to: PKAFWEPAYGTEILCLSFSRKRL*SRARSC
Trigger: ACAGCTCCGGGCTCTGCTCCACAAGCGTTTTCTGCT...AAAGCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp TCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTACACTCAGATCCCCTaGCATCTTTGTCCTGCATAC +
Preference number: 4 (lower is better)
Translates to: SPRAQGFLGASVWYRDPLYTQIP*HLCPAY
Trigger: GTATGCAGGACAAAGATGCCAGGGGATCTGAGTGTA...CAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp TATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCACAAAGGCCACCATaGCATGCCAGCCCTTGTTGT +
Preference number: 4 (lower is better)
Translates to: YFPQSPRLSGSQRMVQRSSQRPP*HASPCC
Trigger: ACAACAAGGGCTGGCATGCCATGGTGGCCTTTGTGA...GGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAATA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp GCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCTTTCACAAAGGCCACCATaGCATGCCAGCCCTTGTTGT +
Preference number: 4 (lower is better)
Translates to: AQGFLGASVWYRDPLSELSQRPP*HASPCC
Trigger: ACAACAAGGGCTGGCATGCCATGGTGGCCTTTGTGA...AAGCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp CCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCGAAGAAGAAGGAGGCTaGGTACATGAGTGGTGTGAT +
Preference number: 4 (lower is better)
Translates to: PQSPRLSGSQRMVQRSSVEEEGG*VHEWCD
Trigger: ATCACACCACTCATGTACCCAGCCTCCTTCTTCTTC...GACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp AGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGACACCTCCTCCAGAGTaGTCTGGCTCACAGAGAAGT +
Preference number: 4 (lower is better)
Translates to: RAQGFLGASVWYRDPLSETPPPE*SGSQRS
Trigger: ACTTCTCTGTGAGCCAGACCACTCTGGAGGAGGTGT...CTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp TTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCTTTGCCACTCAAAGCCCTGTGGGGCTTaGGGATCCAGCACCAGCTTA +
Preference number: 4 (lower is better)
Translates to: FLGASVWYRDPLSELCHSKPCGA*GSSTSL
Trigger: TAAGCTGGTGCTGGATCCCCAAGCCCCACAGGGCTT...TGAGTGGCAAAGCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171637.8
CDS-3UTR TCA 90 bp TTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCTTTGCCACTCAATAGAATCCTGGGCTTaGCCCAGCACAGGATCCAGG +
Preference number: 4 (lower is better)
Translates to: FLGASVWYRDPLSELCHSIESWA*PSTGSR
Trigger: CCTGGATCCTGTGCTGGGTCAAGCCCAGGATTCTAT...TGAGTGGCAAAGCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR TCA 90 bp TTCTTTTTATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAACTCAGGGCTGGAGATaGCAGTTCGGATGGGTCCAG +
Preference number: 4 (lower is better)
Translates to: FFLFPPEPKAFWEPAYGTTQGWR*QFGWVQ
Trigger: CTGGACCCATCCGAACTGTCATCTCCAGCCCTGAGT...TGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAATAAAAAGAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
CDS-3UTR TCA 90 bp CCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCTTTTGGAGAAGAAGGCGCTaGGCAGAAAACTCTGAGCGA +
Preference number: 4 (lower is better)
Translates to: PKAFWEPAYGTEILCLSFWRRRR*AENSER
Trigger: TCGCTCAGAGTTTTCTGCTCAGCGCCTTCTTCTCCA...AAAGCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR TCA 90 bp TTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCTTTGCCACTCACGTAGAAGTCAAGGTTaGGTCCTTGCAGGGCTGGCT +
Preference number: 4 (lower is better)
Translates to: FLGASVWYRDPLSELCHSRRSQG*VLAGLA
Trigger: AGCCAGCCCTGCAAGGACTCAACCTTGACTTCTACG...TGAGTGGCAAAGCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR TCA 90 bp TTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCTTTGCCACTCAGCCTCATCCAGGTGGTaGGTGGAGAGAATCAGTGTC +
Preference number: 4 (lower is better)
Translates to: FLGASVWYRDPLSELCHSASSRW*VERISV
Trigger: GACACTGATTCTCTCCACTCACCACCTGGATGAGGC...TGAGTGGCAAAGCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR TCA 90 bp TTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCGAAAGGCTAGGAAGATaGACACCACTATGCACACTG +
Preference number: 4 (lower is better)
Translates to: FPPEPKAFWEPAYGTEILERLGR*TPLCTL
Trigger: CAGTGTGCATAGTGGTGTTCATCTTCCTAGCCTTTC...GAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR TCA 90 bp GAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCGAAAGGCTAGGAAGATaGACACCACTATGCACACTG +
Preference number: 4 (lower is better)
Translates to: EPKAFWEPAYGTEILCLSERLGR*TPLCTL
Trigger: CAGTGTGCATAGTGGTGTTCATCTTCCTAGCCTTTC...GCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR TCA 90 bp TTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCTTTGCCACTCATCCGAACCATGTCAATaGGCCCTCGGCCAAGGCAAA +
Preference number: 4 (lower is better)
Translates to: FLGASVWYRDPLSELCHSSEPCQ*ALGQGK
Trigger: TTTGCCTTGGCCGAGGGCTCATTGACATGGTTCGGA...TGAGTGGCAAAGCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR TCA 90 bp AGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCAGCAGTCTTGGTTTTaGTTGTGGCAGGAGACGGTT +
Preference number: 4 (lower is better)
Translates to: RAQGFLGASVWYRDPLSEQQSWF*LWQETV
Trigger: AACCGTCTCCTGCCACAATCAAAACCAAGACTGCTG...CTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR GCA 90 bp TTCTTTTTATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGATGGGTCCAGAGGATaGTCTGGGCTCAGGAACACG +
Preference number: 4 (lower is better)
Translates to: FFLFPPEPKAFWEPAYGTDGSRG*SGLRNT
Trigger: CGTGTTCCTGAGCCCAGAGCATCCTCTGGACCCATC...TGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAATAAAAAGAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
CDS-3UTR GCA 90 bp CCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCACAGAAAGTTTTCTCTaGATTCCACCAGAGAGGTGG +
Preference number: 4 (lower is better)
Translates to: PQSPRLSGSQRMVQRSSVTESFL*IPPERW
Trigger: CCACCTCTCTGGTGGAATGCAGAGAAAACTTTCTGT...GACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR GCA 90 bp AGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCTGTGTCTGACGTCCTaGCATTGCCATCTGACTTCT +
Preference number: 4 (lower is better)
Translates to: RAQGFLGASVWYRDPLSELCLTS*HCHLTS
Trigger: AGAAGTCAGATGGCAATGGCAGGACGTCAGACACAG...CTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR GCA 90 bp CAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCTTTGCCTGGCATCTTTGTCCTaGATACTGGGTTCCTGCAGC +
Preference number: 4 (lower is better)
Translates to: QGFLGASVWYRDPLSELCLASLS*ILGSCS
Trigger: GCTGCAGGAACCCAGTATGCAGGACAAAGATGCCAG...GCAAAGCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR GCA 90 bp TCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGCACCACTATGCACACTaGCACCAAGTAGTTACACAT +
Preference number: 4 (lower is better)
Translates to: SPRAQGFLGASVWYRDPLHHYAH*HQVVTH
Trigger: ATGTGTAACTACTTGGTGGCAGTGTGCATAGTGGTG...CAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp CAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCTTTGCAGTGTCAGGAGCTCCTaGGCAAGATCCCTGATAGCA +
Preference number: 4 (lower is better)
Translates to: QGFLGASVWYRDPLSELCSVRSS*ARSLIA
Trigger: TGCTATCAGGGATCTTGCCCAGGAGCTCCTGACACT...GCAAAGCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp TTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCTTTGCCACTCATTTCCCGAGGATCAATaGCTTCAGGCGCCTCCAGAG +
Preference number: 4 (lower is better)
Translates to: FLGASVWYRDPLSELCHSFPEDQ*LQAPPE
Trigger: CTCTGGAGGCGCCTGAAGCCATTGATCCTCGGGAAA...TGAGTGGCAAAGCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp TTCTTTTTATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGCCTCCAACTTCTTCTaGGCTCTGGGTGTCTGCTGC +
Preference number: 4 (lower is better)
Translates to: FFLFPPEPKAFWEPAYGTASNFF*ALGVCC
Trigger: GCAGCAGACACCCAGAGCCCAGAAGAAGTTGGAGGC...TGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAATAAAAAGAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
CDS-3UTR CCA 90 bp TCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGAGAGACCACTCAAAATaGACAGTGTGGTTGTCTTGC +
Preference number: 4 (lower is better)
Translates to: SPRAQGFLGASVWYRDPLRDHSK*TVWLSC
Trigger: GCAAGACAACCACACTGTCCATTTTGAGTGGTCTCT...CAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp CCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCTTTTTGGTTTGTACATCATaGCCCAGGATGGAGGCCGAG +
Preference number: 4 (lower is better)
Translates to: PKAFWEPAYGTEILCLSFLVCTS*PRMEAE
Trigger: CTCGGCCTCCATCCTGGGCCATGATGTACAAACCAA...AAAGCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp CAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCTTTGCTTGGTTTGTACATCATaGCCCAGGATGGAGGCCGAG +
Preference number: 4 (lower is better)
Translates to: QGFLGASVWYRDPLSELCLVCTS*PRMEAE
Trigger: CTCGGCCTCCATCCTGGGCCATGATGTACAAACCAA...GCAAAGCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp CCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTTACACTCAGATCCCCTaGCATCTTTGTCCTGCATAC +
Preference number: 4 (lower is better)
Translates to: PRAQGFLGASVWYRDPLSYTQIP*HLCPAY
Trigger: GTATGCAGGACAAAGATGCCAGGGGATCTGAGTGTA...AGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp TTTTATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGACATCCACCCACTTCTTaGTCTTTAGGCCTCGGCGCA +
Preference number: 4 (lower is better)
Translates to: FYFPQSPRLSGSQRMVQRHPPTS*SLGLGA
Trigger: TGCGCCGAGGCCTAAAGACCAAGAAGTGGGTGGATG...TCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAATAAAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
CDS-3UTR CCA 90 bp GAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCGAAGAAGAAGGAGGCTaGGTACATGAGTGGTGTGAT +
Preference number: 4 (lower is better)
Translates to: EPKAFWEPAYGTEILCLSEEEGG*VHEWCD
Trigger: ATCACACCACTCATGTACCCAGCCTCCTTCTTCTTC...GCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp TTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCTTTGCCACTCACCACATAGGCCGTGCTaGGCACTGAGAAGAAGAAGG +
Preference number: 4 (lower is better)
Translates to: FLGASVWYRDPLSELCHSPHRPC*ALRRRR
Trigger: CCTTCTTCTTCTCAGTGCCCAGCACGGCCTATGTGG...TGAGTGGCAAAGCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp TCTAGTTTCTTTTTATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATAGGAACAGAGGTCCCTaGGCCATCATGGCCAGGAGG +
Preference number: 4 (lower is better)
Translates to: SSFFLFPPEPKAFWEPAYRNRGP*AIMARR
Trigger: CCTCCTGGCCATGATGGCCCAGGGACCTCTGTTCCT...ATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAATAAAAAGAAACTAGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
CDS-3UTR TCA 90 bp TCTAGTTTCTTTTTATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATCACAAGAGCTTCCTCTaGGGGCACAGCCTCCAGCTT +
Preference number: 4 (lower is better)
Translates to: SSFFLFPPEPKAFWEPAYHKSFL*GHSLQL
Trigger: AAGCTGGAGGCTGTGCCCTCAGAGGAAGCTCTTGTG...ATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAATAAAAAGAAACTAGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
CDS-3UTR TCA 90 bp TTTTATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGAAGAAGCCCCCATATCTaGCCTCATCCACCCACTTCT +
Preference number: 4 (lower is better)
Translates to: FYFPQSPRLSGSQRMVQRRSPHI*PHPPTS
Trigger: AGAAGTGGGTGGATGAGGTCAGATATGGGGGCTTCT...TCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAATAAAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
CDS-3UTR TCA 90 bp GAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCACTTCTTGCAGGTTCTaGTCTGAAAGCAGTTCTAGC +
Preference number: 4 (lower is better)
Translates to: EPKAFWEPAYGTEILCLSTSCRF*SESSSS
Trigger: GCTAGAACTGCTTTCAGATCAGAACCTGCAAGAAGT...GCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR TCA 90 bp CAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCTTTGCCAGCAGTCTTGGTTTTaGTTGTGGCAGGAGACGGTT +
Preference number: 4 (lower is better)
Translates to: QGFLGASVWYRDPLSELCQQSWF*LWQETV
Trigger: AACCGTCTCCTGCCACAATCAAAACCAAGACTGCTG...GCAAAGCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR TCA 90 bp TCTAGTTTCTTTTTATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATCCCCGAACCTGCCTTTaGGATGCTGAGAGCTTCCCA +
Preference number: 4 (lower is better)
Translates to: SSFFLFPPEPKAFWEPAYPRTCL*DAESFP
Trigger: TGGGAAGCTCTCAGCATCTCAAAGGCAGGTTCGGGG...ATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAATAAAAAGAAACTAGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
CDS-3UTR GCA 90 bp CCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTGAAGTTTGTGTCAGGTaGAAAGAGAATTTTCCCGAG +
Preference number: 4 (lower is better)
Translates to: PPEPKAFWEPAYGTEILCEVCVR*KENFPE
Trigger: CTCGGGAAAATTCTCTTTGCACCTGACACAAACTTC...ACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR GCA 90 bp CCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGACAGAAAGTTTTCTCTaGATTCCACCAGAGAGGTGG +
Preference number: 4 (lower is better)
Translates to: PEPKAFWEPAYGTEILCLTESFL*IPPERW
Trigger: CCACCTCTCTGGTGGAATGCAGAGAAAACTTTCTGT...CAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR GCA 90 bp TCTAGTTTCTTTTTATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGTAGCAATTCCCAAATaGCACGGCGGGAAGCGGGGT +
Preference number: 4 (lower is better)
Translates to: SSFFLFPPEPKAFWEPAYVAIPK*HGGKRG
Trigger: ACCCCGCTTCCCGCCGTGGCATTTGGGAATTGCTAC...ATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAATAAAAAGAAACTAGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
CDS-3UTR GCA 90 bp CCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTCACCACTATGCACACTaGCACCAAGTAGTTACACAT +
Preference number: 4 (lower is better)
Translates to: PRAQGFLGASVWYRDPLSHHYAH*HQVVTH
Trigger: ATGTGTAACTACTTGGTGGCAGTGTGCATAGTGGTG...AGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR GCA 90 bp TTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTCACCACTATGCACACTaGCACCAAGTAGTTACACAT +
Preference number: 4 (lower is better)
Translates to: FPQSPRLSGSQRMVQRSSHHYAH*HQVVTH
Trigger: ATGTGTAACTACTTGGTGGCAGTGTGCATAGTGGTG...AGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR GCA 90 bp TCTAGTTTCTTTTTATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGCGCTCAAAGGCATCTaGCATGGCCTGGTTCCGAAC +
Preference number: 4 (lower is better)
Translates to: SSFFLFPPEPKAFWEPAYALKGI*HGLVPN
Trigger: GTTCGGAACCAGGCCATGGCAGATGCCTTTGAGCGC...ATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAATAAAAAGAAACTAGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
CDS-3UTR CCA 90 bp TTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCTTTGCCACTCAAGTGTCAGGAGCTCCTaGGCAAGATCCCTGATAGCA +
Preference number: 4 (lower is better)
Translates to: FLGASVWYRDPLSELCHSSVRSS*ARSLIA
Trigger: TGCTATCAGGGATCTTGCCCAGGAGCTCCTGACACT...TGAGTGGCAAAGCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp TTCTTTTTATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAAACCTTGGGATCTTGTaGGGCAGGGGCCAAGACAGA +
Preference number: 4 (lower is better)
Translates to: FFLFPPEPKAFWEPAYGTNLGIL*GRGQDR
Trigger: TCTGTCTTGGCCCCTGCCCCACAAGATCCCAAGGTT...TGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAATAAAAAGAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
CDS-3UTR CCA 90 bp CCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCTTTCGAGCCACTACTGGGTaGGAAGAGACCACTCAAAAT +
Preference number: 4 (lower is better)
Translates to: PKAFWEPAYGTEILCLSFRATTG*EETTQN
Trigger: ATTTTGAGTGGTCTCTTCCCACCCAGTAGTGGCTCG...AAAGCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp TCTAGTTTCTTTTTATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATATTCCACCAGAGAGGTaGCGTGTCTGTGTGTCCCGC +
Preference number: 4 (lower is better)
Translates to: SSFFLFPPEPKAFWEPAYIPPER*RVCVSR
Trigger: GCGGGACACACAGACACGCCACCTCTCTGGTGGAAT...ATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAATAAAAAGAAACTAGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
CDS-3UTR CCA 90 bp TCTAGTTTCTTTTTATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATTGGGGATGGAGATTCTaGCGTCCAGTTGCCACTGGC +
Preference number: 4 (lower is better)
Translates to: SSFFLFPPEPKAFWEPAYWGWRF*RPVATG
Trigger: GCCAGTGGCAACTGGACGCCAGAATCTCCATCCCCA...ATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAATAAAAAGAAACTAGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
CDS-3UTR CCA 90 bp TATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCGAAGAAGAAGGAGGCTaGGTACATGAGTGGTGTGAT +
Preference number: 4 (lower is better)
Translates to: YFPQSPRLSGSQRMVQRSEEEGG*VHEWCD
Trigger: ATCACACCACTCATGTACCCAGCCTCCTTCTTCTTC...GGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAATA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp TTTTATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGAGCATCTGCCATGGCCTaGTTCCGAACCATGTCAATG +
Preference number: 4 (lower is better)
Translates to: FYFPQSPRLSGSQRMVQRASAMA*FRTMSM
Trigger: CATTGACATGGTTCGGAACCAGGCCATGGCAGATGC...TCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAATAAAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
CDS-3UTR CCA 90 bp TCTTTTTATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGGCATCTGCCATGGCCTaGTTCCGAACCATGTCAATG +
Preference number: 4 (lower is better)
Translates to: SFYFPQSPRLSGSQRMVQASAMA*FRTMSM
Trigger: CATTGACATGGTTCGGAACCAGGCCATGGCAGATGC...CTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAATAAAAAGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
CDS-3UTR CCA 90 bp TTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCTTTGCCACTCACAAAGGCATCTGCCATaGCCTGGTTCCGAACCATGT +
Preference number: 4 (lower is better)
Translates to: FLGASVWYRDPLSELCHSQRHLP*PGSEPC
Trigger: ACATGGTTCGGAACCAGGCCATGGCAGATGCCTTTG...TGAGTGGCAAAGCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp TTCTTTTTATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACATCCTCCAGAGTGGTCTaGCTCACAGAGAAGTCCTCC +
Preference number: 4 (lower is better)
Translates to: FFLFPPEPKAFWEPAYGTSSRVV*LTEKSS
Trigger: GGAGGACTTCTCTGTGAGCCAGACCACTCTGGAGGA...TGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAATAAAAAGAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
CDS-3UTR CCA 90 bp CCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTCTTCCTCTTCCCCTTaGTCTTTGGAGAAATATAGG +
Preference number: 4 (lower is better)
Translates to: PQSPRLSGSQRMVQRSSVSSSSP*SLEKYR
Trigger: CCTATATTTCTCCAAAGACCAAGGGGAAGAGGAAGA...GACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp TTCTTTTTATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGCTGCCGGCCAGGTTTaGAAACCTCCTCTTCTTCAG +
Preference number: 4 (lower is better)
Translates to: FFLFPPEPKAFWEPAYGTAAGQV*KPPLLQ
Trigger: CTGAAGAAGAGGAGGTTTCCAAACCTGGCCGGCAGC...TGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAATAAAAAGAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
CDS-3UTR TCA 90 bp TCTAGTTTCTTTTTATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGCCTCATCCAGGTGGTaGGTGGAGAGAATCAGTGTC +
Preference number: 4 (lower is better)
Translates to: SSFFLFPPEPKAFWEPAYASSRW*VERISV
Trigger: GACACTGATTCTCTCCACTCACCACCTGGATGAGGC...ATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAATAAAAAGAAACTAGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
CDS-3UTR TCA 90 bp GCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCTTACTTCTTGCAGGTTCTaGTCTGAAAGCAGTTCTAGC +
Preference number: 4 (lower is better)
Translates to: AQGFLGASVWYRDPLSELTSCRF*SESSSS
Trigger: GCTAGAACTGCTTTCAGATCAGAACCTGCAAGAAGT...AAGCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp TCTTTTTATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGTCAAAATGGACAGTGTaGTTGTCTTGCCAGCCCCGT +
Preference number: 4 (lower is better)
Translates to: SFYFPQSPRLSGSQRMVQSKWTV*LSCQPR
Trigger: ACGGGGCTGGCAAGACAACCACACTGTCCATTTTGA...CTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAATAAAAAGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
CDS-3UTR CCA 90 bp TATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCAGAGACCACTCAAAATaGACAGTGTGGTTGTCTTGC +
Preference number: 4 (lower is better)
Translates to: YFPQSPRLSGSQRMVQRSRDHSK*TVWLSC
Trigger: GCAAGACAACCACACTGTCCATTTTGAGTGGTCTCT...GGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAATA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp TTTTATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGACGAGCCACTACTGGGTaGGAAGAGACCACTCAAAAT +
Preference number: 4 (lower is better)
Translates to: FYFPQSPRLSGSQRMVQRRATTG*EETTQN
Trigger: ATTTTGAGTGGTCTCTTCCCACCCAGTAGTGGCTCG...TCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAATAAAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
CDS-3UTR CCA 90 bp TCTAGTTTCTTTTTATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATTGCAGGGGTGGGTACTaGCCAAAAGGAGGCACAATG +
Preference number: 4 (lower is better)
Translates to: SSFFLFPPEPKAFWEPAYCRGGY*PKGGTM
Trigger: CATTGTGCCTCCTTTTGGCCAGTACCCACCCCTGCA...ATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAATAAAAAGAAACTAGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
CDS-3UTR CCA 90 bp TTCTTTTTATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAACTGCATTGGCAAGCTaGGGATGGAGATTCTGGCGT +
Preference number: 4 (lower is better)
Translates to: FFLFPPEPKAFWEPAYGTTALAS*GWRFWR
Trigger: ACGCCAGAATCTCCATCCCCAGCTTGCCAATGCAGT...TGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAATAAAAAGAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
CDS-3UTR CCA 90 bp TCTAGTTTCTTTTTATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATCATCCACCCACTTCTTaGTCTTTAGGCCTCGGCGCA +
Preference number: 4 (lower is better)
Translates to: SSFFLFPPEPKAFWEPAYHPPTS*SLGLGA
Trigger: TGCGCCGAGGCCTAAAGACCAAGAAGTGGGTGGATG...ATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAATAAAAAGAAACTAGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
CDS-3UTR CCA 90 bp CCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGGTCAAGTTCAAAGGATaGTTGAGTGTAGTGATGCTG +
Preference number: 4 (lower is better)
Translates to: PEPKAFWEPAYGTEILCLVKFKG*LSVVML
Trigger: CAGCATCACTACACTCAACCATCCTTTGAACTTGAC...CAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp ATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCAGATAGCTGCTCCTTaGTCAAGTTCAAAGGATGGT +
Preference number: 4 (lower is better)
Translates to: ISPRAQGFLGASVWYRDPQIAAP*SSSKDG
Trigger: ACCATCCTTTGAACTTGACCAAGGAGCAGCTATCTG...AGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp TCTAGTTTCTTTTTATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATCCACATAGGCCGTGCTaGGCACTGAGAAGAAGAAGG +
Preference number: 4 (lower is better)
Translates to: SSFFLFPPEPKAFWEPAYPHRPC*ALRRRR
Trigger: CCTTCTTCTTCTCAGTGCCCAGCACGGCCTATGTGG...ATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAATAAAAAGAAACTAGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
CDS-3UTR TCA 90 bp TCTAGTTTCTTTTTATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATAGAAGCCCCCATATCTaGCCTCATCCACCCACTTCT +
Preference number: 4 (lower is better)
Translates to: SSFFLFPPEPKAFWEPAYRSPHI*PHPPTS
Trigger: AGAAGTGGGTGGATGAGGTCAGATATGGGGGCTTCT...ATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAATAAAAAGAAACTAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 2 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
CDS-3UTR TCA 90 bp TTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCTTTGCCACTCAGACTTCTTGCAGGTTCTaGTCTGAAAGCAGTTCTAGC +
Preference number: 4 (lower is better)
Translates to: FWEPAYGTEILCLSFATQTSCRF*SESSSS
Trigger: GCTAGAACTGCTTTCAGATCAGAACCTGCAAGAAGT...CTGAGTGGCAAAGCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp CCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAAAAGGGAAATTCCATaGTTCAGGGATTCCATACTG +
Preference number: 4 (lower is better)
Translates to: PEPKAFWEPAYGTEILCLKREIP*FRDSIL
Trigger: CAGTATGGAATCCCTGAACCATGGAATTTCCCTTTT...CAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp TCTAGTTTCTTTTTATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATACTTCTTTTCCCGTCTaGGGTCCTCACTGTCTCCCT +
Preference number: 4 (lower is better)
Translates to: SSFFLFPPEPKAFWEPAYTSFPV*GPHCLP
Trigger: AGGGAGACAGTGAGGACCCCAGACGGGAAAAGAAGT...ATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAATAAAAAGAAACTAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
CDS-3UTR CCA 90 bp TCTTTTTATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGTACACTCAGATCCCCTaGCATCTTTGTCCTGCATAC +
Preference number: 4 (lower is better)
Translates to: SFYFPQSPRLSGSQRMVQYTQIP*HLCPAY
Trigger: GTATGCAGGACAAAGATGCCAGGGGATCTGAGTGTA...CTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAATAAAAAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
CDS-3UTR CCA 90 bp CAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCTTTGCCAGATAGCTGCTCCTTaGTCAAGTTCAAAGGATGGT +
Preference number: 4 (lower is better)
Translates to: QGFLGASVWYRDPLSELCQIAAP*SSSKDG
Trigger: ACCATCCTTTGAACTTGACCAAGGAGCAGCTATCTG...GCAAAGCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp TTATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCAGATAGCTGCTCCTTaGTCAAGTTCAAAGGATGGT +
Preference number: 4 (lower is better)
Translates to: LFPPEPKAFWEPAYGTEIQIAAP*SSSKDG
Trigger: ACCATCCTTTGAACTTGACCAAGGAGCAGCTATCTG...GATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAATAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp ATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTAAAAGGGAAATTCCATaGTTCAGGGATTCCATACTG +
Preference number: 4 (lower is better)
Translates to: ISPRAQGFLGASVWYRDPKREIP*FRDSIL
Trigger: CAGTATGGAATCCCTGAACCATGGAATTTCCCTTTT...AGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp AGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGAAAAGGGAAATTCCATaGTTCAGGGATTCCATACTG +
Preference number: 4 (lower is better)
Translates to: RAQGFLGASVWYRDPLSEKREIP*FRDSIL
Trigger: CAGTATGGAATCCCTGAACCATGGAATTTCCCTTTT...CTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp TCTAGTTTCTTTTTATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATTCAAAATGGACAGTGTaGTTGTCTTGCCAGCCCCGT +
Preference number: 4 (lower is better)
Translates to: SSFFLFPPEPKAFWEPAYSKWTV*LSCQPR
Trigger: ACGGGGCTGGCAAGACAACCACACTGTCCATTTTGA...ATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAATAAAAAGAAACTAGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
CDS-3UTR CCA 90 bp TCTTTTTATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGAGACCACTCAAAATaGACAGTGTGGTTGTCTTGC +
Preference number: 4 (lower is better)
Translates to: SFYFPQSPRLSGSQRMVQRDHSK*TVWLSC
Trigger: GCAAGACAACCACACTGTCCATTTTGAGTGGTCTCT...CTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAATAAAAAGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
CDS-3UTR CCA 90 bp CCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCTTTGTCAAGTTCAAAGGATaGTTGAGTGTAGTGATGCTG +
Preference number: 4 (lower is better)
Translates to: PKAFWEPAYGTEILCLSFVKFKG*LSVVML
Trigger: CAGCATCACTACACTCAACCATCCTTTGAACTTGAC...AAAGCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp CCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCTTTCTTCCCCTTGGTCTTTaGAGAAATATAGGAACACCT +
Preference number: 4 (lower is better)
Translates to: PKAFWEPAYGTEILCLSFLPLGL*RNIGTP
Trigger: AGGTGTTCCTATATTTCTCCAAAGACCAAGGGGAAG...AAAGCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CCA 90 bp CAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCTTTGCTCTTCCTCTTCCCCTTaGTCTTTGGAGAAATATAGG +
Preference number: 4 (lower is better)
Translates to: QGFLGASVWYRDPLSELCSSSSP*SLEKYR
Trigger: CCTATATTTCTCCAAAGACCAAGGGGAAGAGGAAGA...GCAAAGCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR TCA 90 bp TTATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCATCCCTGATAGCATCTaGGAACTTTCTCATAGAATC +
Preference number: 4 (lower is better)
Translates to: LFPPEPKAFWEPAYGTEIIPDSI*ELSHRI
Trigger: GATTCTATGAGAAAGTTCTCAGATGCTATCAGGGAT...GATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAATAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR GCA 90 bp TTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCTTTGCCACTCAGAAGTTTGTGTCAGGTaGAAAGAGAATTTTCCCGAG +
Preference number: 4 (lower is better)
Translates to: FLGASVWYRDPLSELCHSEVCVR*KENFPE
Trigger: CTCGGGAAAATTCTCTTTGCACCTGACACAAACTTC...TGAGTGGCAAAGCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR GCA 90 bp TTCTTTTTATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAACAGAAAGTTTTCTCTaGATTCCACCAGAGAGGTGG +
Preference number: 4 (lower is better)
Translates to: FFLFPPEPKAFWEPAYGTTESFL*IPPERW
Trigger: CCACCTCTCTGGTGGAATGCAGAGAAAACTTTCTGT...TGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAATAAAAAGAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
CDS-3UTR CCA 90 bp TCTTTTTATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGCTTCCCCTTGGTCTTTaGAGAAATATAGGAACACCT +
Preference number: 4 (lower is better)
Translates to: SFYFPQSPRLSGSQRMVQLPLGL*RNIGTP
Trigger: AGGTGTTCCTATATTTCTCCAAAGACCAAGGGGAAG...CTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAATAAAAAGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
CDS-3UTR CCA 90 bp TCTTTTTATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGTCTTCCTCTTCCCCTTaGTCTTTGGAGAAATATAGG +
Preference number: 4 (lower is better)
Translates to: SFYFPQSPRLSGSQRMVQSSSSP*SLEKYR
Trigger: CCTATATTTCTCCAAAGACCAAGGGGAAGAGGAAGA...CTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAATAAAAAGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
CDS-3UTR CCA 90 bp TTCTTTTTATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGTCAAGTTCAAAGGATaGTTGAGTGTAGTGATGCTG +
Preference number: 4 (lower is better)
Translates to: FFLFPPEPKAFWEPAYGTVKFKG*LSVVML
Trigger: CAGCATCACTACACTCAACCATCCTTTGAACTTGAC...TGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAATAAAAAGAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
CDS-3UTR CCA 90 bp TTCTTTTTATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACACTTCCCCTTGGTCTTTaGAGAAATATAGGAACACCT +
Preference number: 4 (lower is better)
Translates to: FFLFPPEPKAFWEPAYGTLPLGL*RNIGTP
Trigger: AGGTGTTCCTATATTTCTCCAAAGACCAAGGGGAAG...TGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAATAAAAAGAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
CDS-3UTR GCA 90 bp TCTAGTTTCTTTTTATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGAAGTTTGTGTCAGGTaGAAAGAGAATTTTCCCGAG +
Preference number: 4 (lower is better)
Translates to: SSFFLFPPEPKAFWEPAYEVCVR*KENFPE
Trigger: CTCGGGAAAATTCTCTTTGCACCTGACACAAACTTC...ATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAATAAAAAGAAACTAGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
CDS-3UTR TCA 90 bp TCTAGTTTCTTTTTATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATATCCCTGATAGCATCTaGGAACTTTCTCATAGAATC +
Preference number: 4 (lower is better)
Translates to: SSFFLFPPEPKAFWEPAYIPDSI*ELSHRI
Trigger: GATTCTATGAGAAAGTTCTCAGATGCTATCAGGGAT...ATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAATAAAAAGAAACTAGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
CDS GCA 90 bp GTAGAGACCTGTGCGGGAGTTCCCGCCACCGAGCACTCGCACAGCTaGCTGCTCCAGCAGGTCCTGCAGGTACACGAAGCCTCCCCACAC +
Preference number: 5 (lower is better)
Translates to: VETCAGVPATEHSHS*LLQQVLQVHEASPH
Trigger: GTGTGGGGAGGCTTCGTGTACCTGCAGGACCTGCTGGAGCAGGCAGCTGTGCGAGTGCTCGGTGGCGGGAACTCCCGCACAGGTCTCTAC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS TCA 90 bp CCAGCTCCAGCCGGGCAATCTGGCAACAGGCGGCGGGCTCCAGGCTaGCTGCATTGGCAAGCTGGGGATGGAGATTCTGGCGTCCAGTTG +
Preference number: 5 (lower is better)
Translates to: PAPAGQSGNRRRAPG*LHWQAGDGDSGVQL
Trigger: CAACTGGACGCCAGAATCTCCATCCCCAGCTTGCCAATGCAGTCAGCCTGGAGCCCGCCGCCTGTTGCCAGATTGCCCGGCTGGAGCTGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS GCA 90 bp AGACCTGTGCGGGAGTTCCCGCCACCGAGCACTCGCACAGCTGCCTaGTCCAGCAGGTCCTGCAGGTACACGAAGCCTCCCCACACATAC +
Preference number: 5 (lower is better)
Translates to: RPVREFPPPSTRTAA*SSRSCRYTKPPHTY
Trigger: GTATGTGTGGGGAGGCTTCGTGTACCTGCAGGACCTGCTGGAGCAGGCAGCTGTGCGAGTGCTCGGTGGCGGGAACTCCCGCACAGGTCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS GCA 90 bp GTGTGCGGCAGACCGCTCCTGGGCCACGTTGTGGCCTGCCAGTACTaGTTCACCACTGCTGGGCAGTGTGTCCCCTGTCACCATGCGGAA +
Preference number: 5 (lower is better)
Translates to: VCGRPLLGHVVACQY*FTTAGQCVPCHHAE
Trigger: TTCCGCATGGTGACAGGGGACACACTGCCCAGCAGTGGTGAAGCAGTACTGGCAGGCCACAACGTGGCCCAGGAGCGGTCTGCCGCACAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS CCA 90 bp CCGGCTCAGCACCCGCAGGAACACATCATCCACGTAGCAGGGGTGTaGCATCTGCTGCAGGTAGAGACCTGTGCGGGAGTTCCCGCCACC +
Preference number: 5 (lower is better)
Translates to: PAQHPQEHIIHVAGV*HLLQVETCAGVPAT
Trigger: GGTGGCGGGAACTCCCGCACAGGTCTCTACCTGCAGCAGATGCCACACCCCTGCTACGTGGATGATGTGTTCCTGCGGGTGCTGAGCCGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS CCA 90 bp CAACAGGCGGCGGGCTCCAGGCTGACTGCATTGGCAAGCTGGGGATaGAGATTCTGGCGTCCAGTTGCCACTGGCCAGGATGCTGGCCAC +
Preference number: 5 (lower is better)
Translates to: QQAAGSRLTALASWG*RFWRPVATGQDAGH
Trigger: GTGGCCAGCATCCTGGCCAGTGGCAACTGGACGCCAGAATCTCCATCCCCAGCTTGCCAATGCAGTCAGCCTGGAGCCCGCCGCCTGTTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS TCA 90 bp AGGCTGAAGACGTCCTCCGCGGGGCCTGTGCCCAAATTGTGCCACTaGGCCCCGTCTCCCTGCTCCTCTAGTAGCGCCAGGCTTTCGCAT +
Preference number: 5 (lower is better)
Translates to: RLKTSSAGPVPKLCH*APSPCSSSSARLSH
Trigger: ATGCGAAAGCCTGGCGCTACTAGAGGAGCAGGGAGACGGGGCTCAGTGGCACAATTTGGGCACAGGCCCCGCGGAGGACGTCTTCAGCCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS GCA 90 bp GCTTCTCGCCAGGCGTTGGGTGCTGGAAGCAGGAGTTGTTTACGTTaGAGACAAGGCCCTGCAGCCAGGGCACCGTGCCCGCCGATGGTA +
Preference number: 5 (lower is better)
Translates to: ASRQALGAGSRSCLR*RQGPAARAPCPPMV
Trigger: TACCATCGGCGGGCACGGTGCCCTGGCTGCAGGGCCTTGTCTGCAACGTAAACAACTCCTGCTTCCAGCACCCAACGCCTGGCGAGAAGC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS GCA 90 bp CAAAGAGGGCAGGCAACACAACCTGTGCAAACAGGCCCCGGCGGCTaGGGCGAGCAAGCAGAAAACGCTTGTGGAGCAGAGCCCGGAGCT +
Preference number: 5 (lower is better)
Translates to: QRGQATQPVQTGPGG*GEQAENACGAEPGA
Trigger: AGCTCCGGGCTCTGCTCCACAAGCGTTTTCTGCTTGCTCGCCGCAGCCGCCGGGGCCTGTTTGCACAGGTTGTGTTGCCTGCCCTCTTTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS CCA 90 bp ACCAACCAAGCCAGAGCACCGCGCGGCTCAGCCCCATCGCACGCATaGTTTCTCGCAGCCGTGTCTCTTTCTCACGCACCACGGCCTTCA +
Preference number: 5 (lower is better)
Translates to: TNQARAPRGSAPSHA*FLAAVSLSHAPRPS
Trigger: TGAAGGCCGTGGTGCGTGAGAAAGAGACACGGCTGCGAGAAACCATGCGTGCGATGGGGCTGAGCCGCGCGGTGCTCTGGCTTGGTTGGT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS CCA 90 bp GCGGGCTCCAGGCTGACTGCATTGGCAAGCTGGGGATGGAGATTCTaGCGTCCAGTTGCCACTGGCCAGGATGCTGGCCACATCAGGAGG +
Preference number: 5 (lower is better)
Translates to: AGSRLTALASWGWRF*RPVATGQDAGHIRR
Trigger: CCTCCTGATGTGGCCAGCATCCTGGCCAGTGGCAACTGGACGCCAGAATCTCCATCCCCAGCTTGCCAATGCAGTCAGCCTGGAGCCCGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS CCA 90 bp GCAGTGCCCGAATCTCTGCCAATGTGCGGACCACCTCATGCCCTGTaGGCAGGTCTGGATCTCGGCCTCCCAGGGAGAAGCCCCCATATC +
Preference number: 5 (lower is better)
Translates to: AVPESLPMCGPPHAL*AGLDLGLPGRSPHI
Trigger: GATATGGGGGCTTCTCCCTGGGAGGCCGAGATCCAGACCTGCCCACAGGGCATGAGGTGGTCCGCACATTGGCAGAGATTCGGGCACTGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS TCA 90 bp TCGGCTGGTCACTCTCCTGTGGTCGTGCTCCACCTCCAACTGCCCTaGGCACGGGGATCAGTTTCCCCAGGGCATCCAGCATGTCCTGGA +
Preference number: 5 (lower is better)
Translates to: SAGHSPVVVLHLQLP*ARGSVSPGHPACPG
Trigger: TCCAGGACATGCTGGATGCCCTGGGGAAACTGATCCCCGTGCTCAGGGCAGTTGGAGGTGGAGCACGACCACAGGAGAGTGACCAGCCGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS TCA 90 bp GCGCTCACCCAGCAGCTCCAGGGCACGGGACACAAGAGCTTCCTCTaGGGGCACAGCCTCCAGCTTGTCCAGGGACACACACTCCATCAT +
Preference number: 5 (lower is better)
Translates to: ALTQQLQGTGHKSFL*GHSLQLVQGHTLHH
Trigger: ATGATGGAGTGTGTGTCCCTGGACAAGCTGGAGGCTGTGCCCTCAGAGGAAGCTCTTGTGTCCCGTGCCCTGGAGCTGCTGGGTGAGCGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS GCA 90 bp ACCGCTCCTGGGCCACGTTGTGGCCTGCCAGTACTGCTTCACCACTaGTGGGCAGTGTGTCCCCTGTCACCATGCGGAAGGTGGATGTCT +
Preference number: 5 (lower is better)
Translates to: TAPGPRCGLPVLLHH*WAVCPLSPCGRWMS
Trigger: AGACATCCACCTTCCGCATGGTGACAGGGGACACACTGCCCAGCAGTGGTGAAGCAGTACTGGCAGGCCACAACGTGGCCCAGGAGCGGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS CCA 90 bp TGTACTGCGGGCAGATGCCCAGGTGGGGCCGGATGGCTGCCATGTTaGTTTGTACATCATGGCCCAGGATGGAGGCCGAGCCACTACTGG +
Preference number: 5 (lower is better)
Translates to: CTAGRCPGGAGWLPC*FVHHGPGWRPSHYW
Trigger: CCAGTAGTGGCTCGGCCTCCATCCTGGGCCATGATGTACAAACCAACATGGCAGCCATCCGGCCCCACCTGGGCATCTGCCCGCAGTACA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CAA 90 bp TTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGCAGGGCTGAGACTGTaGTCAGGCAGGGCAGGGGCC +
Preference number: 5 (lower is better)
Translates to: FPQSPRLSGSQRMVQRSSAGLRL*SGRAGA
Trigger: GGCCCCTGCCCTGCCTGACAACAGTCTCAGCCCTGC...AGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CAA 90 bp CCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGCACTTGGGCAGCGTaGGGTGCCAAGCCCTGTGGG +
Preference number: 5 (lower is better)
Translates to: PQSPRLSGSQRMVQRSSVCTWAA*GAKPCG
Trigger: CCCACAGGGCTTGGCACCCAACGCTGCCCAAGTGCA...GACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CAA 90 bp TCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGCGCTCCTGGGCCACGTaGTGGCCTGCCAGTACTGCT +
Preference number: 5 (lower is better)
Translates to: SPRAQGFLGASVWYRDPLRSWAT*WPASTA
Trigger: AGCAGTACTGGCAGGCCACAACGTGGCCCAGGAGCG...CAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS TCA 90 bp CGGCGAGCAAGCAGAAAACGCTTGTGGAGCAGAGCCCGGAGCTGTTaGCAGGTAAGTGTCCAGCCTTGCACTTGGGCAGCGTTGGGTGCC +
Preference number: 5 (lower is better)
Translates to: RRASRKRLWSRARSC*QVSVQPCTWAALGA
Trigger: GGCACCCAACGCTGCCCAAGTGCAAGGCTGGACACTTACCTGTCAACAGCTCCGGGCTCTGCTCCACAAGCGTTTTCTGCTTGCTCGCCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS TCA 90 bp TGGGCAGGTCTGGATCTCGGCCTCCCAGGGAGAAGCCCCCATATCTaGCCTCATCCACCCACTTCTTGGTCTTTAGGCCTCGGCGCACCA +
Preference number: 5 (lower is better)
Translates to: WAGLDLGLPGRSPHI*PHPPTSWSLGLGAP
Trigger: TGGTGCGCCGAGGCCTAAAGACCAAGAAGTGGGTGGATGAGGTCAGATATGGGGGCTTCTCCCTGGGAGGCCGAGATCCAGACCTGCCCA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS TCA 90 bp GTGGGACCCTTAGAGTCAGTGTGTGGCCAGCCCCGAACCTGCCTTTaGGATGCTGAGAGCTTCCCAGACAGCGGAACCGCCCGTTCACCA +
Preference number: 5 (lower is better)
Translates to: VGPLESVCGQPRTCL*DAESFPDSGTARSP
Trigger: TGGTGAACGGGCGGTTCCGCTGTCTGGGAAGCTCTCAGCATCTCAAAGGCAGGTTCGGGGCTGGCCACACACTGACTCTAAGGGTCCCAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS GCA 90 bp GGAGCTCCAGCTGCTGATCCAGCTCCTGGAAGACCATGGCGAAGCTaGCATCCAGGGCCCCCGCATAGGGTAGCACAAGCAGAAGCTCAT +
Preference number: 5 (lower is better)
Translates to: GAPAADPAPGRPWRS*HPGPPHRVAQAEAH
Trigger: ATGAGCTTCTGCTTGTGCTACCCTATGCGGGGGCCCTGGATGGCAGCTTCGCCATGGTCTTCCAGGAGCTGGATCAGCAGCTGGAGCTCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS GCA 90 bp GCTGACTGCATTGGCAAGCTGGGGATGGAGATTCTGGCGTCCAGTTaGCACTGGCCAGGATGCTGGCCACATCAGGAGGGACCTCAGGGA +
Preference number: 5 (lower is better)
Translates to: ADCIGKLGMEILASS*HWPGCWPHQEGPQG
Trigger: TCCCTGAGGTCCCTCCTGATGTGGCCAGCATCCTGGCCAGTGGCAACTGGACGCCAGAATCTCCATCCCCAGCTTGCCAATGCAGTCAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS CCA 90 bp AACCAGGCCAAGGGGTGGCTCTTCCACCAGAACCTTGGGATCTTGTaGGGCAGGGGCCAAGACAGAACTCTTGGGAGGCCCAGGTCCACA +
Preference number: 5 (lower is better)
Translates to: NQAKGWLFHQNLGIL*GRGQDRTLGRPRST
Trigger: TGTGGACCTGGGCCTCCCAAGAGTTCTGTCTTGGCCCCTGCCCCACAAGATCCCAAGGTTCTGGTGGAAGAGCCACCCCTTGGCCTGGTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CAA 90 bp AGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGGCAGGGCTGAGACTGTaGTCAGGCAGGGCAGGGGCC +
Preference number: 5 (lower is better)
Translates to: RAQGFLGASVWYRDPLSEAGLRL*SGRAGA
Trigger: GGCCCCTGCCCTGCCTGACAACAGTCTCAGCCCTGC...CTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CAA 90 bp ATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTGCAGGGCTGAGACTGTaGTCAGGCAGGGCAGGGGCC +
Preference number: 5 (lower is better)
Translates to: ISPRAQGFLGASVWYRDPAGLRL*SGRAGA
Trigger: GGCCCCTGCCCTGCCTGACAACAGTCTCAGCCCTGC...AGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAAT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CAA 90 bp TCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGGGCACAGCCTCCAGCTaGTCCAGGGACACACACTCC +
Preference number: 5 (lower is better)
Translates to: SPRAQGFLGASVWYRDPLGTASS*SRDTHS
Trigger: GGAGTGTGTGTCCCTGGACAAGCTGGAGGCTGTGCC...CAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CAA 90 bp TTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGCACTTGGGCAGCGTaGGGTGCCAAGCCCTGTGGG +
Preference number: 5 (lower is better)
Translates to: FPPEPKAFWEPAYGTEILCTWAA*GAKPCG
Trigger: CCCACAGGGCTTGGCACCCAACGCTGCCCAAGTGCA...GAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CAA 90 bp CCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGCGCTCCTGGGCCACGTaGTGGCCTGCCAGTACTGCT +
Preference number: 5 (lower is better)
Translates to: PEPKAFWEPAYGTEILCLRSWAT*WPASTA
Trigger: AGCAGTACTGGCAGGCCACAACGTGGCCCAGGAGCG...CAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CAA 90 bp TTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTCGCTCCTGGGCCACGTaGTGGCCTGCCAGTACTGCT +
Preference number: 5 (lower is better)
Translates to: FPQSPRLSGSQRMVQRSSRSWAT*WPASTA
Trigger: AGCAGTACTGGCAGGCCACAACGTGGCCCAGGAGCG...AGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS GCA 90 bp GTACACTCAGATCCCCTGGCATCTTTGTCCTGCATACTGGGTTCCTaGAGCCCAGCCTCCCCTAGCAGAGCCTCCAGCAGCTTCATCCGG +
Preference number: 5 (lower is better)
Translates to: VHSDPLASLSCILGS*SPASPSRASSSFIR
Trigger: CCGGATGAAGCTGCTGGAGGCTCTGCTAGGGGAGGCTGGGCTGCAGGAACCCAGTATGCAGGACAAAGATGCCAGGGGATCTGAGTGTAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS CCA 90 bp CAAACAGCACATTGTACTGCGGGCAGATGCCCAGGTGGGGCCGGATaGCTGCCATGTTGGTTTGTACATCATGGCCCAGGATGGAGGCCG +
Preference number: 5 (lower is better)
Translates to: QTAHCTAGRCPGGAG*LPCWFVHHGPGWRP
Trigger: CGGCCTCCATCCTGGGCCATGATGTACAAACCAACATGGCAGCCATCCGGCCCCACCTGGGCATCTGCCCGCAGTACAATGTGCTGTTTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS CCA 90 bp AATCTCTGCCAATGTGCGGACCACCTCATGCCCTGTGGGCAGGTCTaGATCTCGGCCTCCCAGGGAGAAGCCCCCATATCTGACCTCATC +
Preference number: 5 (lower is better)
Translates to: NLCQCADHLMPCGQV*ISASQGEAPISDLI
Trigger: GATGAGGTCAGATATGGGGGCTTCTCCCTGGGAGGCCGAGATCCAGACCTGCCCACAGGGCATGAGGTGGTCCGCACATTGGCAGAGATT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CAA 90 bp GCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCTTGGACTGCTGGGTCCCTaGGTACTGCAGAGGGCCTCC +
Preference number: 5 (lower is better)
Translates to: AQGFLGASVWYRDPLSELGLLGP*VLQRAS
Trigger: GGAGGCCCTCTGCAGTACCAAGGGACCCAGCAGTCC...AAGCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CAA 90 bp TATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCGGACTGCTGGGTCCCTaGGTACTGCAGAGGGCCTCC +
Preference number: 5 (lower is better)
Translates to: YFPQSPRLSGSQRMVQRSGLLGP*VLQRAS
Trigger: GGAGGCCCTCTGCAGTACCAAGGGACCCAGCAGTCC...GGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAATA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CAA 90 bp AGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGGGACTGCTGGGTCCCTaGGTACTGCAGAGGGCCTCC +
Preference number: 5 (lower is better)
Translates to: RAQGFLGASVWYRDPLSEGLLGP*VLQRAS
Trigger: GGAGGCCCTCTGCAGTACCAAGGGACCCAGCAGTCC...CTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CAA 90 bp CCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGGCACAGCCTCCAGCTaGTCCAGGGACACACACTCC +
Preference number: 5 (lower is better)
Translates to: PRAQGFLGASVWYRDPLSGTASS*SRDTHS
Trigger: GGAGTGTGTGTCCCTGGACAAGCTGGAGGCTGTGCC...AGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CAA 90 bp CCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCAGAACCTTGGGATCTaGTGGGGCAGGGGCCAAGAC +
Preference number: 5 (lower is better)
Translates to: PPEPKAFWEPAYGTEILCQNLGI*WGRGQD
Trigger: GTCTTGGCCCCTGCCCCACAAGATCCCAAGGTTCTG...ACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CAA 90 bp CCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCCAGGTCCTCCACGAGTaGTGCTCCAGGCACATGCTG +
Preference number: 5 (lower is better)
Translates to: PQSPRLSGSQRMVQRSSVQVLHE*CSRHML
Trigger: CAGCATGTGCCTGGAGCACAACTCGTGGAGGACCTG...GACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CAA 90 bp CCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCGCAAGCAGAAAACGCTaGTGGAGCAGAGCCCGGAGC +
Preference number: 5 (lower is better)
Translates to: PQSPRLSGSQRMVQRSSVASRKR*WSRARS
Trigger: GCTCCGGGCTCTGCTCCACAAGCGTTTTCTGCTTGC...GACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CAA 90 bp CCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTGATTCTGGCGTCCAGTaGCCACTGGCCAGGATGCTG +
Preference number: 5 (lower is better)
Translates to: PPEPKAFWEPAYGTEILCDSGVQ*PLARML
Trigger: CAGCATCCTGGCCAGTGGCAACTGGACGCCAGAATC...ACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS GCA 90 bp CCCCACATCCCGTATCAGACGTTCCCGCTCGGGGCCCATGGCGGCTaGACTCACGCCTTTCAAACGGCCATAGAACCAAACATGTTCTTC +
Preference number: 5 (lower is better)
Translates to: PHIPYQTFPLGAHGG*THAFQTAIEPNMFF
Trigger: GAAGAACATGTTTGGTTCTATGGCCGTTTGAAAGGCGTGAGTGCAGCCGCCATGGGCCCCGAGCGGGAACGTCTGATACGGGATGTGGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS GCA 90 bp ACAGAGCTGGGGTCTTCCAGGAATCGGCTGACACGTTTGGGATGCTaGCGGCCAGGTTTGGAAACCTCCTCTTCTTCAGCCTCCTGCCGA +
Preference number: 5 (lower is better)
Translates to: TELGSSRNRLTRLGC*RPGLETSSSSASCR
Trigger: TCGGCAGGAGGCTGAAGAAGAGGAGGTTTCCAAACCTGGCCGGCAGCATCCCAAACGTGTCAGCCGATTCCTGGAAGACCCCAGCTCTGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS CCA 90 bp CTCATTAAGCTGGTTGGCTTCGTACCAATTGAGGGACAGGCCCCCTaGACTGCTGGGTCCCTTGGTACTGCAGAGGGCCTCCGAAACCAG +
Preference number: 5 (lower is better)
Translates to: LIKLVGFVPIEGQAP*TAGSLGTAEGLRNQ
Trigger: CTGGTTTCGGAGGCCCTCTGCAGTACCAAGGGACCCAGCAGTCCAGGGGGCCTGTCCCTCAATTGGTACGAAGCCAACCAGCTTAATGAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS CCA 90 bp GCAGGCAGGGCTGAGACTGTTGTCAGGCAGGGCAGGGGCCACCTCTaGCCCCATGAACTCATTAAGCTGGTTGGCTTCGTACCAATTGAG +
Preference number: 5 (lower is better)
Translates to: AGRAETVVRQGRGHL*PHELIKLVGFVPIE
Trigger: CTCAATTGGTACGAAGCCAACCAGCTTAATGAGTTCATGGGGCCAGAGGTGGCCCCTGCCCTGCCTGACAACAGTCTCAGCCCTGCCTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS CCA 90 bp GGGCTGGCTGCGGACAGCCACGAAAATGTTTCTTCAGGCCTCGAATaGAGACACCAGGAACCAGGCCAAGGGGTGGCTCTTCCACCAGAA +
Preference number: 5 (lower is better)
Translates to: GLAADSHENVSSGLE*RHQEPGQGVALPPE
Trigger: TTCTGGTGGAAGAGCCACCCCTTGGCCTGGTTCCTGGTGTCTCCATTCGAGGCCTGAAGAAACATTTTCGTGGCTGTCCGCAGCCAGCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS CCA 90 bp GGGGCCGGATGGCTGCCATGTTGGTTTGTACATCATGGCCCAGGATaGAGGCCGAGCCACTACTGGGTGGGAAGAGACCACTCAAAATGG +
Preference number: 5 (lower is better)
Translates to: GAGWLPCWFVHHGPG*RPSHYWVGRDHSKW
Trigger: CCATTTTGAGTGGTCTCTTCCCACCCAGTAGTGGCTCGGCCTCCATCCTGGGCCATGATGTACAAACCAACATGGCAGCCATCCGGCCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CAA 90 bp GCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCTTGCTTCTCGCCAGGCGTaGGGTGCTGGAAGCAGGAGT +
Preference number: 5 (lower is better)
Translates to: AQGFLGASVWYRDPLSELASRQA*GAGSRS
Trigger: ACTCCTGCTTCCAGCACCCAACGCCTGGCGAGAAGC...AAGCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CAA 90 bp TATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCGCTTCTCGCCAGGCGTaGGGTGCTGGAAGCAGGAGT +
Preference number: 5 (lower is better)
Translates to: YFPQSPRLSGSQRMVQRSASRQA*GAGSRS
Trigger: ACTCCTGCTTCCAGCACCCAACGCCTGGCGAGAAGC...GGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAATA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CAA 90 bp TATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCGGCACAGCCTCCAGCTaGTCCAGGGACACACACTCC +
Preference number: 5 (lower is better)
Translates to: YFPQSPRLSGSQRMVQRSGTASS*SRDTHS
Trigger: GGAGTGTGTGTCCCTGGACAAGCTGGAGGCTGTGCC...GGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAATA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CAA 90 bp GAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCCAGAACCTTGGGATCTaGTGGGGCAGGGGCCAAGAC +
Preference number: 5 (lower is better)
Translates to: EPKAFWEPAYGTEILCLSQNLGI*WGRGQD
Trigger: GTCTTGGCCCCTGCCCCACAAGATCCCAAGGTTCTG...GCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CAA 90 bp CCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTCAGAACCTTGGGATCTaGTGGGGCAGGGGCCAAGAC +
Preference number: 5 (lower is better)
Translates to: PRAQGFLGASVWYRDPLSQNLGI*WGRGQD
Trigger: GTCTTGGCCCCTGCCCCACAAGATCCCAAGGTTCTG...AGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CAA 90 bp GAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCCAGGTCCTCCACGAGTaGTGCTCCAGGCACATGCTG +
Preference number: 5 (lower is better)
Translates to: EPKAFWEPAYGTEILCLSQVLHE*CSRHML
Trigger: CAGCATGTGCCTGGAGCACAACTCGTGGAGGACCTG...GCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CAA 90 bp TTATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCTGCACTTGGGCAGCGTaGGGTGCCAAGCCCTGTGGG +
Preference number: 5 (lower is better)
Translates to: LFPPEPKAFWEPAYGTEICTWAA*GAKPCG
Trigger: CCCACAGGGCTTGGCACCCAACGCTGCCCAAGTGCA...GATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAATAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CAA 90 bp CCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGCAAGCAGAAAACGCTaGTGGAGCAGAGCCCGGAGC +
Preference number: 5 (lower is better)
Translates to: PRAQGFLGASVWYRDPLSASRKR*WSRARS
Trigger: GCTCCGGGCTCTGCTCCACAAGCGTTTTCTGCTTGC...AGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CAA 90 bp CCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTACCAGCTGCAGATGCTaGGCTCTGGTGATGCGTTCC +
Preference number: 5 (lower is better)
Translates to: PPEPKAFWEPAYGTEILCTSCRC*ALVMRS
Trigger: GGAACGCATCACCAGAGCCAAGCATCTGCAGCTGGT...ACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CAA 90 bp TCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGGAGACGGTTGCGGTGTaGGAGCAGGAGTGTGATGAG +
Preference number: 5 (lower is better)
Translates to: SPRAQGFLGASVWYRDPLETVAV*EQECDE
Trigger: CTCATCACACTCCTGCTCCAACACCGCAACCGTCTC...CAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS GCA 90 bp CATGTGCGAAGGTGCAGCTGCGGTCTAGAGTCCCCACCTTCTCTGTaGGCATCCTCCACCACCTTTAGGAAGATCTCCTCCAGGTTGGTG +
Preference number: 5 (lower is better)
Translates to: HVRRCSCGLESPPSL*ASSTTFRKISSRLV
Trigger: CACCAACCTGGAGGAGATCTTCCTAAAGGTGGTGGAGGATGCGCACAGAGAAGGTGGGGACTCTAGACCGCAGCTGCACCTTCGCACATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS CCA 90 bp GGCGGACTGGACCAGATGGTAGGAGGGCATGTAGGAGTCCATTGTTaGCTCGGTTCACAAAGGCCACCATGGCATGCCAGCCCTTGTTGT +
Preference number: 5 (lower is better)
Translates to: GGLDQMVGGHVGVHC*LGSQRPPWHASPCC
Trigger: ACAACAAGGGCTGGCATGCCATGGTGGCCTTTGTGAACCGAGCCAACAATGGACTCCTACATGCCCTCCTACCATCTGGTCCAGTCCGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS CCA 90 bp GGCAGCAGTCTTGGTTTTGATTGTGGCAGGAGACGGTTGCGGTGTTaGAGCAGGAGTGTGATGAGGAGGAACAGAGGTCCCTGGGCCATC +
Preference number: 5 (lower is better)
Translates to: GSSLGFDCGRRRLRC*SRSVMRRNRGPWAI
Trigger: GATGGCCCAGGGACCTCTGTTCCTCCTCATCACACTCCTGCTCCAACACCGCAACCGTCTCCTGCCACAATCAAAACCAAGACTGCTGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS CCA 90 bp CCTTGGTCTTTGGAGAAATATAGGAACACCTCCTCCAGAGTGGTCTaGCTCACAGAGAAGTCCTCCACACCGTGGGCCCTGCCCTGGGCA +
Preference number: 5 (lower is better)
Translates to: PWSLEKYRNTSSRVV*LTEKSSTPWALPWA
Trigger: TGCCCAGGGCAGGGCCCACGGTGTGGAGGACTTCTCTGTGAGCCAGACCACTCTGGAGGAGGTGTTCCTATATTTCTCCAAAGACCAAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CAA 90 bp CCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCCATAGAATCCTGGGCTaGACCCAGCACAGGATCCAG +
Preference number: 5 (lower is better)
Translates to: PQSPRLSGSQRMVQRSSVHRILG*TQHRIQ
Trigger: CTGGATCCTGTGCTGGGTCAAGCCCAGGATTCTATG...GACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CAA 90 bp AGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGGCAAGCAGAAAACGCTaGTGGAGCAGAGCCCGGAGC +
Preference number: 5 (lower is better)
Translates to: RAQGFLGASVWYRDPLSEASRKR*WSRARS
Trigger: GCTCCGGGCTCTGCTCCACAAGCGTTTTCTGCTTGC...CTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS GCA 90 bp TCCTTAAAGTTACTCAGGACCCCAGGCTTCTCGCCAGGCGTTGGGTaGTGGAAGCAGGAGTTGTTTACGTTGCAGACAAGGCCCTGCAGC +
Preference number: 5 (lower is better)
Translates to: SLKLLRTPGFSPGVG*WKQELFTLQTRPCS
Trigger: GCTGCAGGGCCTTGTCTGCAACGTAAACAACTCCTGCTTCCAGCACCCAACGCCTGGCGAGAAGCCTGGGGTCCTGAGTAACTTTAAGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS CCA 90 bp TTAAAGTTACTCAGGACCCCAGGCTTCTCGCCAGGCGTTGGGTGCTaGAAGCAGGAGTTGTTTACGTTGCAGACAAGGCCCTGCAGCCAG +
Preference number: 5 (lower is better)
Translates to: LKLLRTPGFSPGVGC*KQELFTLQTRPCSQ
Trigger: CTGGCTGCAGGGCCTTGTCTGCAACGTAAACAACTCCTGCTTCCAGCACCCAACGCCTGGCGAGAAGCCTGGGGTCCTGAGTAACTTTAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS CCA 90 bp CTTCCCCTTGGTCTTTGGAGAAATATAGGAACACCTCCTCCAGAGTaGTCTGGCTCACAGAGAAGTCCTCCACACCGTGGGCCCTGCCCT +
Preference number: 5 (lower is better)
Translates to: LPLGLWRNIGTPPPE*SGSQRSPPHRGPCP
Trigger: AGGGCAGGGCCCACGGTGTGGAGGACTTCTCTGTGAGCCAGACCACTCTGGAGGAGGTGTTCCTATATTTCTCCAAAGACCAAGGGGAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CAA 90 bp TTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCTTTGCCACTCAGCTTCTCGCCAGGCGTaGGGTGCTGGAAGCAGGAGT +
Preference number: 5 (lower is better)
Translates to: FLGASVWYRDPLSELCHSASRQA*GAGSRS
Trigger: ACTCCTGCTTCCAGCACCCAACGCCTGGCGAGAAGC...TGAGTGGCAAAGCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CAA 90 bp CCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTCATAGAATCCTGGGCTaGACCCAGCACAGGATCCAG +
Preference number: 5 (lower is better)
Translates to: PRAQGFLGASVWYRDPLSHRILG*TQHRIQ
Trigger: CTGGATCCTGTGCTGGGTCAAGCCCAGGATTCTATG...AGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CAA 90 bp CCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCTTTCAGGTCCTCCACGAGTaGTGCTCCAGGCACATGCTG +
Preference number: 5 (lower is better)
Translates to: PKAFWEPAYGTEILCLSFQVLHE*CSRHML
Trigger: CAGCATGTGCCTGGAGCACAACTCGTGGAGGACCTG...AAAGCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CAA 90 bp TTATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCGATTCTGGCGTCCAGTaGCCACTGGCCAGGATGCTG +
Preference number: 5 (lower is better)
Translates to: LFPPEPKAFWEPAYGTEIDSGVQ*PLARML
Trigger: CAGCATCCTGGCCAGTGGCAACTGGACGCCAGAATC...GATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAATAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CAA 90 bp ATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTTCCAGGCTGACTGCATaGGCAAGCTGGGGATGGAGA +
Preference number: 5 (lower is better)
Translates to: ISPRAQGFLGASVWYRDPSRLTA*ASWGWR
Trigger: TCTCCATCCCCAGCTTGCCAATGCAGTCAGCCTGGA...AGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CAA 90 bp TCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTGTAGGAGTCCATTGTaGGCTCGGTTCACAAAGGCC +
Preference number: 5 (lower is better)
Translates to: SPRAQGFLGASVWYRDPLCRSPL*ARFTKA
Trigger: GGCCTTTGTGAACCGAGCCAACAATGGACTCCTACA...CAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CAA 90 bp GCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCTTGAGACGGTTGCGGTGTaGGAGCAGGAGTGTGATGAG +
Preference number: 5 (lower is better)
Translates to: AQGFLGASVWYRDPLSELETVAV*EQECDE
Trigger: CTCATCACACTCCTGCTCCAACACCGCAACCGTCTC...AAGCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS GCA 90 bp AGGAGTTGTTTACGTTGCAGACAAGGCCCTGCAGCCAGGGCACCGTaGCCGCCGATGGTAATGGCTTGTTTGGAAAGTGGCATTCGTGAT +
Preference number: 5 (lower is better)
Translates to: RSCLRCRQGPAARAP*PPMVMACLESGIRD
Trigger: ATCACGAATGCCACTTTCCAAACAAGCCATTACCATCGGCGGGCACGGTGCCCTGGCTGCAGGGCCTTGTCTGCAACGTAAACAACTCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS CCA 90 bp GGAATCCTTAAAGTTACTCAGGACCCCAGGCTTCTCGCCAGGCGTTaGGTGCTGGAAGCAGGAGTTGTTTACGTTGCAGACAAGGCCCTG +
Preference number: 5 (lower is better)
Translates to: GILKVTQDPRLLARR*VLEAGVVYVADKAL
Trigger: CAGGGCCTTGTCTGCAACGTAAACAACTCCTGCTTCCAGCACCCAACGCCTGGCGAGAAGCCTGGGGTCCTGAGTAACTTTAAGGATTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS CCA 90 bp GGTTTGTACATCATGGCCCAGGATGGAGGCCGAGCCACTACTGGGTaGGAAGAGACCACTCAAAATGGACAGTGTGGTTGTCTTGCCAGC +
Preference number: 5 (lower is better)
Translates to: GLYIMAQDGGRATTG*EETTQNGQCGCLAS
Trigger: GCTGGCAAGACAACCACACTGTCCATTTTGAGTGGTCTCTTCCCACCCAGTAGTGGCTCGGCCTCCATCCTGGGCCATGATGTACAAACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CAA 90 bp CCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTTGCTGGAAGCAGGAGTaGTTTACGTTGCAGACAAGG +
Preference number: 5 (lower is better)
Translates to: PPEPKAFWEPAYGTEILCCWKQE*FTLQTR
Trigger: CCTTGTCTGCAACGTAAACAACTCCTGCTTCCAGCA...ACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CAA 90 bp ATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCATAGAATCCTGGGCTaGACCCAGCACAGGATCCAG +
Preference number: 5 (lower is better)
Translates to: ISPRAQGFLGASVWYRDPHRILG*TQHRIQ
Trigger: CTGGATCCTGTGCTGGGTCAAGCCCAGGATTCTATG...AGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CAA 90 bp CCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCATATCAAACAGCACATaGTACTGCGGGCAGATGCCC +
Preference number: 5 (lower is better)
Translates to: PQSPRLSGSQRMVQRSSVISNST*YCGQMP
Trigger: GGGCATCTGCCCGCAGTACAATGTGCTGTTTGATAT...GACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CAA 90 bp TTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCTTTGCCACTCAGATTCTGGCGTCCAGTaGCCACTGGCCAGGATGCTG +
Preference number: 5 (lower is better)
Translates to: FLGASVWYRDPLSELCHSDSGVQ*PLARML
Trigger: CAGCATCCTGGCCAGTGGCAACTGGACGCCAGAATC...TGAGTGGCAAAGCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CAA 90 bp TTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGCCAGCCCTTGTTGTaGAACCAGATCTTGAGGCTG +
Preference number: 5 (lower is better)
Translates to: FPPEPKAFWEPAYGTEILCQPLL*NQILRL
Trigger: CAGCCTCAAGATCTGGTTCAACAACAAGGGCTGGCA...GAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CAA 90 bp TTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCTTTGCCACTCAGACCAGCTGCAGATGCTaGGCTCTGGTGATGCGTTCC +
Preference number: 5 (lower is better)
Translates to: FWEPAYGTEILCLSFATQTSCRC*ALVMRS
Trigger: GGAACGCATCACCAGAGCCAAGCATCTGCAGCTGGT...CTGAGTGGCAAAGCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CAA 90 bp TTATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCACCAGCTGCAGATGCTaGGCTCTGGTGATGCGTTCC +
Preference number: 5 (lower is better)
Translates to: LFPPEPKAFWEPAYGTEITSCRC*ALVMRS
Trigger: GGAACGCATCACCAGAGCCAAGCATCTGCAGCTGGT...GATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAATAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CAA 90 bp TTATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCGAGACGGTTGCGGTGTaGGAGCAGGAGTGTGATGAG +
Preference number: 5 (lower is better)
Translates to: LFPPEPKAFWEPAYGTEIETVAV*EQECDE
Trigger: CTCATCACACTCCTGCTCCAACACCGCAACCGTCTC...GATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAATAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CAA 90 bp TTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCGCAGCAGTCTTGGTTTaGATTGTGGCAGGAGACGGT +
Preference number: 5 (lower is better)
Translates to: FPPEPKAFWEPAYGTEILAAVLV*IVAGDG
Trigger: ACCGTCTCCTGCCACAATCAAAACCAAGACTGCTGC...GAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS TCA 90 bp GCTGGGCAGTGTCAGGAGCTCCTGGGCAAGATCCCTGATAGCATCTaGGAACTTTCTCATAGAATCCTGGGCTTGACCCAGCACAGGATC +
Preference number: 5 (lower is better)
Translates to: AGQCQELLGKIPDSI*ELSHRILGLTQHRI
Trigger: GATCCTGTGCTGGGTCAAGCCCAGGATTCTATGAGAAAGTTCTCAGATGCTATCAGGGATCTTGCCCAGGAGCTCCTGACACTGCCCAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS GCA 90 bp GGATGCTGCCGGCCAGGTTTGGAAACCTCCTCTTCTTCAGCCTCCTaGCGACTGCTCTCTTCCTCTTCCCCTTGGTCTTTGGAGAAATAT +
Preference number: 5 (lower is better)
Translates to: GCCRPGLETSSSSAS*RLLSSSSPWSLEKY
Trigger: ATATTTCTCCAAAGACCAAGGGGAAGAGGAAGAGAGCAGTCGGCAGGAGGCTGAAGAAGAGGAGGTTTCCAAACCTGGCCGGCAGCATCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CAA 90 bp CCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGCTGTCATTCATGAAGTaGAAGATCTGGGGTCCCAGC +
Preference number: 5 (lower is better)
Translates to: PEPKAFWEPAYGTEILCLLSFMK*KIWGPS
Trigger: GCTGGGACCCCAGATCTTCAACTTCATGAATGACAG...CAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CAA 90 bp TTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTCCTGGGTCCCAAAACTaGTCCCTGATCTTATTGGTC +
Preference number: 5 (lower is better)
Translates to: FPQSPRLSGSQRMVQRSSPGSQN*SLILLV
Trigger: GACCAATAAGATCAGGGACAAGTTTTGGGACCCAGG...AGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CAA 90 bp TTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCATATCAAACAGCACATaGTACTGCGGGCAGATGCCC +
Preference number: 5 (lower is better)
Translates to: FPPEPKAFWEPAYGTEILISNST*YCGQMP
Trigger: GGGCATCTGCCCGCAGTACAATGTGCTGTTTGATAT...GAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CAA 90 bp TTTTATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCAGGCTGACTGCATaGGCAAGCTGGGGATGGAGA +
Preference number: 5 (lower is better)
Translates to: FYFPQSPRLSGSQRMVQRSRLTA*ASWGWR
Trigger: TCTCCATCCCCAGCTTGCCAATGCAGTCAGCCTGGA...TCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAATAAAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
CDS-3UTR CAA 90 bp TTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCTTTGCCACTCATCCAGGCTGACTGCATaGGCAAGCTGGGGATGGAGA +
Preference number: 5 (lower is better)
Translates to: FLGASVWYRDPLSELCHSSRLTA*ASWGWR
Trigger: TCTCCATCCCCAGCTTGCCAATGCAGTCAGCCTGGA...TGAGTGGCAAAGCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CAA 90 bp AGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGTGCCAGCCCTTGTTGTaGAACCAGATCTTGAGGCTG +
Preference number: 5 (lower is better)
Translates to: RAQGFLGASVWYRDPLSECQPLL*NQILRL
Trigger: CAGCCTCAAGATCTGGTTCAACAACAAGGGCTGGCA...CTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CAA 90 bp TATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTGTAGGAGTCCATTGTaGGCTCGGTTCACAAAGGCC +
Preference number: 5 (lower is better)
Translates to: YFPQSPRLSGSQRMVQRSCRSPL*ARFTKA
Trigger: GGCCTTTGTGAACCGAGCCAACAATGGACTCCTACA...GGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAATA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CAA 90 bp TATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCGCAGCAGTCTTGGTTTaGATTGTGGCAGGAGACGGT +
Preference number: 5 (lower is better)
Translates to: YFPQSPRLSGSQRMVQRSAAVLV*IVAGDG
Trigger: ACCGTCTCCTGCCACAATCAAAACCAAGACTGCTGC...GGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAATA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS TCA 90 bp CACGAAGCCTCCCCACACATACCGAAGGTCCATGAAAGGATCTGCTaGCGGACCTGGGTCCCAAAACTTGTCCCTGATCTTATTGGTCCT +
Preference number: 5 (lower is better)
Translates to: HEASPHIPKVHERIC*RTWVPKLVPDLIGP
Trigger: AGGACCAATAAGATCAGGGACAAGTTTTGGGACCCAGGTCCGTCAGCAGATCCTTTCATGGACCTTCGGTATGTGTGGGGAGGCTTCGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS GCA 90 bp TGTAGGAGTCCATTGTTGGCTCGGTTCACAAAGGCCACCATGGCATaGCAGCCCTTGTTGTTGAACCAGATCTTGAGGCTGTTCCGAGCA +
Preference number: 5 (lower is better)
Translates to: CRSPLLARFTKATMA*QPLLLNQILRLFRA
Trigger: TGCTCGGAACAGCCTCAAGATCTGGTTCAACAACAAGGGCTGGCATGCCATGGTGGCCTTTGTGAACCGAGCCAACAATGGACTCCTACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS GCA 90 bp GCCGGCCAGGTTTGGAAACCTCCTCTTCTTCAGCCTCCTGCCGACTaGTCTCTTCCTCTTCCCCTTGGTCTTTGGAGAAATATAGGAACA +
Preference number: 5 (lower is better)
Translates to: AGQVWKPPLLQPPAD*SLPLPLGLWRNIGT
Trigger: TGTTCCTATATTTCTCCAAAGACCAAGGGGAAGAGGAAGAGAGCAGTCGGCAGGAGGCTGAAGAAGAGGAGGTTTCCAAACCTGGCCGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS CCA 90 bp AGCAAAGCTCGGAGCTCCATCAGGCTGGGCAGTGTCAGGAGCTCCTaGGCAAGATCCCTGATAGCATCTGAGAACTTTCTCATAGAATCC +
Preference number: 5 (lower is better)
Translates to: SKARSSIRLGSVRSS*ARSLIASENFLIES
Trigger: GGATTCTATGAGAAAGTTCTCAGATGCTATCAGGGATCTTGCCCAGGAGCTCCTGACACTGCCCAGCCTGATGGAGCTCCGAGCTTTGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS CCA 90 bp AGTGAAGTTTGTGTCAGGTGCAAAGAGAATTTTCCCGAGGATCAATaGCTTCAGGCGCCTCCAGAGCAGCCGAGACACAGGGTGGTCATC +
Preference number: 5 (lower is better)
Translates to: SEVCVRCKENFPEDQ*LQAPPEQPRHRVVI
Trigger: GATGACCACCCTGTGTCTCGGCTGCTCTGGAGGCGCCTGAAGCCATTGATCCTCGGGAAAATTCTCTTTGCACCTGACACAAACTTCACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS CCA 90 bp AGTGATGTGGCCTTCGTAGAAGTCAAGGTTGAGTCCTTGCAGGGCTaGCTGCGGACAGCCACGAAAATGTTTCTTCAGGCCTCGAATGGA +
Preference number: 5 (lower is better)
Translates to: SDVAFVEVKVESLQG*LRTATKMFLQASNG
Trigger: TCCATTCGAGGCCTGAAGAAACATTTTCGTGGCTGTCCGCAGCCAGCCCTGCAAGGACTCAACCTTGACTTCTACGAAGGCCACATCACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CAA 90 bp TCTTTTTATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGCAGGAGTTGTTTACGTaGCAGACAAGGCCCTGCAGC +
Preference number: 5 (lower is better)
Translates to: SFYFPQSPRLSGSQRMVQQELFT*QTRPCS
Trigger: GCTGCAGGGCCTTGTCTGCAACGTAAACAACTCCTG...CTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAATAAAAAGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
CDS-3UTR CAA 90 bp AGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCTGTCATTCATGAAGTaGAAGATCTGGGGTCCCAGC +
Preference number: 5 (lower is better)
Translates to: RAQGFLGASVWYRDPLSELSFMK*KIWGPS
Trigger: GCTGGGACCCCAGATCTTCAACTTCATGAATGACAG...CTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CAA 90 bp CCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCATATCCATTCGAATCTaGAATCGTAGGTGGCCAGGA +
Preference number: 5 (lower is better)
Translates to: PQSPRLSGSQRMVQRSSVISIRI*NRRWPG
Trigger: TCCTGGCCACCTACGATTCAAGATTCGAATGGATAT...GACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CAA 90 bp CCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTATATCCATTCGAATCTaGAATCGTAGGTGGCCAGGA +
Preference number: 5 (lower is better)
Translates to: PPEPKAFWEPAYGTEILCISIRI*NRRWPG
Trigger: TCCTGGCCACCTACGATTCAAGATTCGAATGGATAT...ACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CAA 90 bp TTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCTTTGCCACTCAGGCATGCCAGCCCTTGTaGTTGAACCAGATCTTGAGG +
Preference number: 5 (lower is better)
Translates to: FWEPAYGTEILCLSFATQACQPL*LNQILR
Trigger: CCTCAAGATCTGGTTCAACAACAAGGGCTGGCATGC...CTGAGTGGCAAAGCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CAA 90 bp TTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTCAGATAGCTGCTCCTaGGTCAAGTTCAAAGGATGG +
Preference number: 5 (lower is better)
Translates to: FPPEPKAFWEPAYGTEILSDSCS*VKFKGW
Trigger: CCATCCTTTGAACTTGACCAAGGAGCAGCTATCTGA...GAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CAA 90 bp CAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCTTTGCTGCTGGAAGCAGGAGTaGTTTACGTTGCAGACAAGG +
Preference number: 5 (lower is better)
Translates to: QGFLGASVWYRDPLSELCCWKQE*FTLQTR
Trigger: CCTTGTCTGCAACGTAAACAACTCCTGCTTCCAGCA...GCAAAGCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CAA 90 bp TTATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCTGCTGGAAGCAGGAGTaGTTTACGTTGCAGACAAGG +
Preference number: 5 (lower is better)
Translates to: LFPPEPKAFWEPAYGTEICWKQE*FTLQTR
Trigger: CCTTGTCTGCAACGTAAACAACTCCTGCTTCCAGCA...GATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAATAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CAA 90 bp TTATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTGTCATTCATGAAGTaGAAGATCTGGGGTCCCAGC +
Preference number: 5 (lower is better)
Translates to: LFPPEPKAFWEPAYGTEILSFMK*KIWGPS
Trigger: GCTGGGACCCCAGATCTTCAACTTCATGAATGACAG...GATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAATAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CAA 90 bp CCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGGATCCAGAAAGTCTTaGATAGCCTCCAACTTCTTC +
Preference number: 5 (lower is better)
Translates to: PRAQGFLGASVWYRDPLSGSRKS*IASNFF
Trigger: GAAGAAGTTGGAGGCTATCAAAGACTTTCTGGATCC...AGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CAA 90 bp CCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGTTGTCCCTGATCTTATaGGTCCTTGTGACATCATCG +
Preference number: 5 (lower is better)
Translates to: PEPKAFWEPAYGTEILCLLSLIL*VLVTSS
Trigger: CGATGATGTCACAAGGACCAATAAGATCAGGGACAA...CAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CAA 90 bp TTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCTTTGCCACTCAGCCTGGGTCCCAAAACTaGTCCCTGATCTTATTGGTC +
Preference number: 5 (lower is better)
Translates to: FWEPAYGTEILCLSFATQPGSQN*SLILLV
Trigger: GACCAATAAGATCAGGGACAAGTTTTGGGACCCAGG...CTGAGTGGCAAAGCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CAA 90 bp TTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCTTTGCCACTCAGCATGCCAGCCCTTGTaGTTGAACCAGATCTTGAGG +
Preference number: 5 (lower is better)
Translates to: FLGASVWYRDPLSELCHSACQPL*LNQILR
Trigger: CCTCAAGATCTGGTTCAACAACAAGGGCTGGCATGC...TGAGTGGCAAAGCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CAA 90 bp TTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCAAGTTCAAAGGATGGTaGAGTGTAGTGATGCTGTGG +
Preference number: 5 (lower is better)
Translates to: FPPEPKAFWEPAYGTEILKFKGW*SVVMLW
Trigger: CCACAGCATCACTACACTCAACCATCCTTTGAACTT...GAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CAA 90 bp CCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTAAGTTCAAAGGATGGTaGAGTGTAGTGATGCTGTGG +
Preference number: 5 (lower is better)
Translates to: PRAQGFLGASVWYRDPLSKFKGW*SVVMLW
Trigger: CCACAGCATCACTACACTCAACCATCCTTTGAACTT...AGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CAA 90 bp TTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCTTTGCCACTCAGCAGCAGTCTTGGTTTaGATTGTGGCAGGAGACGGT +
Preference number: 5 (lower is better)
Translates to: FLGASVWYRDPLSELCHSAAVLV*IVAGDG
Trigger: ACCGTCTCCTGCCACAATCAAAACCAAGACTGCTGC...TGAGTGGCAAAGCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CAA 90 bp TTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTCTTCCCCTTGGTCTTaGGAGAAATATAGGAACACC +
Preference number: 5 (lower is better)
Translates to: FPPEPKAFWEPAYGTEILSSPWS*EKYRNT
Trigger: GGTGTTCCTATATTTCTCCAAAGACCAAGGGGAAGA...GAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CAA 90 bp TTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCATGGTAATGGCTTGTTaGGAAAGTGGCATTCGTGAT +
Preference number: 5 (lower is better)
Translates to: FPPEPKAFWEPAYGTEILMVMAC*ESGIRD
Trigger: ATCACGAATGCCACTTTCCAAACAAGCCATTACCAT...GAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CAA 90 bp TCTAGTTTCTTTTTATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATCAGGAGTTGTTTACGTaGCAGACAAGGCCCTGCAGC +
Preference number: 5 (lower is better)
Translates to: SSFFLFPPEPKAFWEPAYQELFT*QTRPCS
Trigger: GCTGCAGGGCCTTGTCTGCAACGTAAACAACTCCTG...ATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAATAAAAAGAAACTAGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
CDS-3UTR CAA 90 bp ATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTTTGTCCCTGATCTTATaGGTCCTTGTGACATCATCG +
Preference number: 5 (lower is better)
Translates to: ISPRAQGFLGASVWYRDPLSLIL*VLVTSS
Trigger: CGATGATGTCACAAGGACCAATAAGATCAGGGACAA...AGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CAA 90 bp TTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCTTTGCCACTCAATATCAAACAGCACATaGTACTGCGGGCAGATGCCC +
Preference number: 5 (lower is better)
Translates to: FLGASVWYRDPLSELCHSISNST*YCGQMP
Trigger: GGGCATCTGCCCGCAGTACAATGTGCTGTTTGATAT...TGAGTGGCAAAGCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CAA 90 bp TTCTTTTTATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGCATGCCAGCCCTTGTaGTTGAACCAGATCTTGAGG +
Preference number: 5 (lower is better)
Translates to: FFLFPPEPKAFWEPAYGTACQPL*LNQILR
Trigger: CCTCAAGATCTGGTTCAACAACAAGGGCTGGCATGC...TGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAATAAAAAGAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
CDS-3UTR CAA 90 bp TATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCAAGTTCAAAGGATGGTaGAGTGTAGTGATGCTGTGG +
Preference number: 5 (lower is better)
Translates to: YFPQSPRLSGSQRMVQRSKFKGW*SVVMLW
Trigger: CCACAGCATCACTACACTCAACCATCCTTTGAACTT...GGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAATA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CAA 90 bp TTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCTTTGCCACTCAGTCAGATAGCTGCTCCTaGGTCAAGTTCAAAGGATGG +
Preference number: 5 (lower is better)
Translates to: FWEPAYGTEILCLSFATQSDSCS*VKFKGW
Trigger: CCATCCTTTGAACTTGACCAAGGAGCAGCTATCTGA...CTGAGTGGCAAAGCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CAA 90 bp CCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAAAATAAGAAACACTaGTTTCAGGATCCGGCTCAC +
Preference number: 5 (lower is better)
Translates to: PRAQGFLGASVWYRDPLSENKKH*FQDPAH
Trigger: GTGAGCCGGATCCTGAAACAAGTGTTTCTTATTTTC...AGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS CCA 90 bp ATCAGTGTAGCTTCAGATAGCTGCTCCTTGGTCAAGTTCAAAGGATaGTTGAGTGTAGTGATGCTGTGGGCATGGCGGACTGGACCAGAT +
Preference number: 5 (lower is better)
Translates to: ISVASDSCSLVKFKG*LSVVMLWAWRTGPD
Trigger: ATCTGGTCCAGTCCGCCATGCCCACAGCATCACTACACTCAACCATCCTTTGAACTTGACCAAGGAGCAGCTATCTGAAGCTACACTGAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CAA 90 bp TTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCTTTGCCACTCAGGGATCCAGAAAGTCTTaGATAGCCTCCAACTTCTTC +
Preference number: 5 (lower is better)
Translates to: FWEPAYGTEILCLSFATQGSRKS*IASNFF
Trigger: GAAGAAGTTGGAGGCTATCAAAGACTTTCTGGATCC...CTGAGTGGCAAAGCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CAA 90 bp CAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCTTTGCATATCCATTCGAATCTaGAATCGTAGGTGGCCAGGA +
Preference number: 5 (lower is better)
Translates to: QGFLGASVWYRDPLSELCISIRI*NRRWPG
Trigger: TCCTGGCCACCTACGATTCAAGATTCGAATGGATAT...GCAAAGCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CAA 90 bp TCTTTTTATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGTCAGATAGCTGCTCCTaGGTCAAGTTCAAAGGATGG +
Preference number: 5 (lower is better)
Translates to: SFYFPQSPRLSGSQRMVQSDSCS*VKFKGW
Trigger: CCATCCTTTGAACTTGACCAAGGAGCAGCTATCTGA...CTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAATAAAAAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
CDS-3UTR CAA 90 bp AGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGGAAAATAAGAAACACTaGTTTCAGGATCCGGCTCAC +
Preference number: 5 (lower is better)
Translates to: RAQGFLGASVWYRDPLSEENKKH*FQDPAH
Trigger: GTGAGCCGGATCCTGAAACAAGTGTTTCTTATTTTC...CTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CAA 90 bp TTATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCTCTTCCCCTTGGTCTTaGGAGAAATATAGGAACACC +
Preference number: 5 (lower is better)
Translates to: LFPPEPKAFWEPAYGTEISSPWS*EKYRNT
Trigger: GGTGTTCCTATATTTCTCCAAAGACCAAGGGGAAGA...GATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAATAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CAA 90 bp CCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCTTTATGGTAATGGCTTGTTaGGAAAGTGGCATTCGTGAT +
Preference number: 5 (lower is better)
Translates to: PKAFWEPAYGTEILCLSFMVMAC*ESGIRD
Trigger: ATCACGAATGCCACTTTCCAAACAAGCCATTACCAT...AAAGCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CAA 90 bp TTCTGGGAGCCAGCGTATGGTACAGAGATCCTCTGTCTGAGCTTTGCCACTCAGATGGTAATGGCTTGTTaGGAAAGTGGCATTCGTGAT +
Preference number: 5 (lower is better)
Translates to: FWEPAYGTEILCLSFATQMVMAC*ESGIRD
Trigger: ATCACGAATGCCACTTTCCAAACAAGCCATTACCAT...CTGAGTGGCAAAGCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS-3UTR CAA 90 bp TTTTATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGAGGATCCAGAAAGTCTTaGATAGCCTCCAACTTCTTC +
Preference number: 5 (lower is better)
Translates to: FYFPQSPRLSGSQRMVQRGSRKS*IASNFF
Trigger: GAAGAAGTTGGAGGCTATCAAAGACTTTCTGGATCC...TCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAATAAAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
CDS-3UTR CAA 90 bp TCTAGTTTCTTTTTATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATCCTGGGTCCCAAAACTaGTCCCTGATCTTATTGGTC +
Preference number: 5 (lower is better)
Translates to: SSFFLFPPEPKAFWEPAYPGSQN*SLILLV
Trigger: GACCAATAAGATCAGGGACAAGTTTTGGGACCCAGG...ATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAATAAAAAGAAACTAGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
CDS-3UTR CAA 90 bp TTTTATTTCCCCCAGAGCCCAAGGCTTTCTGGGAGCCAGCGTATGGTACAGAGAGAAAATAAGAAACACTaGTTTCAGGATCCGGCTCAC +
Preference number: 5 (lower is better)
Translates to: FYFPQSPRLSGSQRMVQRENKKH*FQDPAH
Trigger: GTGAGCCGGATCCTGAAACAAGTGTTTCTTATTTTC...TCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAATAAAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
CDS CAA 72 bp CAGGCGCACCAGGCCAGAGAGCGCAGTCTGGGCAACTaGGGCCTCGGGCACCCCGCGCAGGCGAGCAAACAG +
Preference number: 6 (lower is better)
Translates to: QAHQARERSLGN*GLGHPAQASKQ
Trigger: CTGTTTGCTCGCCTGCGCGGGGTGCCCGAGGCCCAAGTTGCCCAGACTGCGCTCTCTGGCCTGGTGCGCCTG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS TCA 72 bp ACGTCCTCCGCGGGGCCTGTGCCCAAATTGTGCCACTaGGCCCCGTCTCCCTGCTCCTCTAGTAGCGCCAGG +
Preference number: 6 (lower is better)
Translates to: TSSAGPVPKLCH*APSPCSSSSAR
Trigger: CCTGGCGCTACTAGAGGAGCAGGGAGACGGGGCTCAGTGGCACAATTTGGGCACAGGCCCCGCGGAGGACGT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS TCA 72 bp GCCGGGCAATCTGGCAACAGGCGGCGGGCTCCAGGCTaGCTGCATTGGCAAGCTGGGGATGGAGATTCTGGC +
Preference number: 6 (lower is better)
Translates to: AGQSGNRRRAPG*LHWQAGDGDSG
Trigger: GCCAGAATCTCCATCCCCAGCTTGCCAATGCAGTCAGCCTGGAGCCCGCCGCCTGTTGCCAGATTGCCCGGC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS GCA 72 bp GGGACAGGCCCCCTGGACTGCTGGGTCCCTTGGTACTaGAGAGGGCCTCCGAAACCAGCTCCAGAGAACCAG +
Preference number: 6 (lower is better)
Translates to: GTGPLDCWVPWY*RGPPKPAPENQ
Trigger: CTGGTTCTCTGGAGCTGGTTTCGGAGGCCCTCTGCAGTACCAAGGGACCCAGCAGTCCAGGGGGCCTGTCCC
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS GCA 72 bp ATGGGTCCAGAGGATGCTCTGGGCTCAGGAACACGATaGCTGCCCAGAGGCGGCGCTCACCCAGCAGCTCCA +
Preference number: 6 (lower is better)
Translates to: MGPEDALGSGTR*LPRGGAHPAAP
Trigger: TGGAGCTGCTGGGTGAGCGCCGCCTCTGGGCAGGCATCGTGTTCCTGAGCCCAGAGCATCCTCTGGACCCAT
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS CCA 72 bp GCCAGAGCACCGCGCGGCTCAGCCCCATCGCACGCATaGTTTCTCGCAGCCGTGTCTCTTTCTCACGCACCA +
Preference number: 6 (lower is better)
Translates to: ARAPRGSAPSHA*FLAAVSLSHAP
Trigger: TGGTGCGTGAGAAAGAGACACGGCTGCGAGAAACCATGCGTGCGATGGGGCTGAGCCGCGCGGTGCTCTGGC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS CCA 72 bp CAGGCGGCGGGCTCCAGGCTGACTGCATTGGCAAGCTaGGGATGGAGATTCTGGCGTCCAGTTGCCACTGGC +
Preference number: 6 (lower is better)
Translates to: QAAGSRLTALAS*GWRFWRPVATG
Trigger: GCCAGTGGCAACTGGACGCCAGAATCTCCATCCCCAGCTTGCCAATGCAGTCAGCCTGGAGCCCGCCGCCTG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS CAA 90 bp GGCTTCTCGCCAGGCGTTGGGTGCTGGAAGCAGGAGTTGTTTACGTaGCAGACAAGGCCCTGCAGCCAGGGCACCGTGCCCGCCGATGGT +
Preference number: 6 (lower is better)
Translates to: GFSPGVGCWKQELFT*QTRPCSQGTVPADG
Trigger: ACCATCGGCGGGCACGGTGCCCTGGCTGCAGGGCCTTGTCTGCAACGTAAACAACTCCTGCTTCCAGCACCCAACGCCTGGCGAGAAGCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS CAA 90 bp AGCCGGGCAATCTGGCAACAGGCGGCGGGCTCCAGGCTGACTGCATaGGCAAGCTGGGGATGGAGATTCTGGCGTCCAGTTGCCACTGGC +
Preference number: 6 (lower is better)
Translates to: SRAIWQQAAGSRLTA*ASWGWRFWRPVATG
Trigger: GCCAGTGGCAACTGGACGCCAGAATCTCCATCCCCAGCTTGCCAATGCAGTCAGCCTGGAGCCCGCCGCCTGTTGCCAGATTGCCCGGCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS GCA 72 bp CCCTTGACTGGTCGGCTGGTCACTCTCCTGTGGTCGTaGTCCACCTCCAACTGCCCTGAGCACGGGGATCAG +
Preference number: 6 (lower is better)
Translates to: PLTGRLVTLLWS*STSNCPEHGDQ
Trigger: CTGATCCCCGTGCTCAGGGCAGTTGGAGGTGGAGCACGACCACAGGAGAGTGACCAGCCGACCAGTCAAGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS GCA 72 bp GGTAAGTGTCCAGCCTTGCACTTGGGCAGCGTTGGGTaGCAAGCCCTGTGGGGCCAGCTCCCCATTCTCCAG +
Preference number: 6 (lower is better)
Translates to: GKCPALHLGSVG*QALWGQLPILQ
Trigger: CTGGAGAATGGGGAGCTGGCCCCACAGGGCTTGGCACCCAACGCTGCCCAAGTGCAAGGCTGGACACTTACC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
CDS GCA 72 bp AGTGCCCGAATCTCTGCCAATGTGCGGACCACCTCATaGCCTGTGGGCAGGTCTGGATCTCGGCCTCCCAGG +
Preference number: 6 (lower is better)
Translates to: SARISANVRTTS*PVGRSGSRPPR
Trigger: CCTGGGAGGCCGAGATCCAGACCTGCCCACAGGGCATGAGGTGGTCCGCACATTGGCAGAGATTCGGGCACT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS GCA 72 bp AGACCGCTCCTGGGCCACGTTGTGGCCTGCCAGTACTaGTTCACCACTGCTGGGCAGTGTGTCCCCTGTCAC +
Preference number: 6 (lower is better)
Translates to: RPLLGHVVACQY*FTTAGQCVPCH
Trigger: GTGACAGGGGACACACTGCCCAGCAGTGGTGAAGCAGTACTGGCAGGCCACAACGTGGCCCAGGAGCGGTCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS CCA 72 bp ACTTGGGCAGCGTTGGGTGCCAAGCCCTGTGGGGCTTaGGGATCCAGCACCAGCTTAGCCAGCTCCCCATTC +
Preference number: 6 (lower is better)
Translates to: TWAALGAKPCGA*GSSTSLASSPF
Trigger: GAATGGGGAGCTGGCTAAGCTGGTGCTGGATCCCCAAGCCCCACAGGGCTTGGCACCCAACGCTGCCCAAGT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000171637.8
CDS CAA 72 bp GGGCAGATGCCCAGGTGGGGCCGGATGGCTGCCATGTaGGTTTGTACATCATGGCCCAGGATGGAGGCCGAG +
Preference number: 6 (lower is better)
Translates to: GQMPRWGRMAAM*VCTSWPRMEAE
Trigger: CTCGGCCTCCATCCTGGGCCATGATGTACAAACCAACATGGCAGCCATCCGGCCCCACCTGGGCATCTGCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS CAA 72 bp CCGGAGCTGTTGACAGGTAAGTGTCCAGCCTTGCACTaGGGCAGCGTTGGGTGCCAAGCCCTGTGGGGCCAG +
Preference number: 6 (lower is better)
Translates to: PELLTGKCPALH*GSVGCQALWGQ
Trigger: CTGGCCCCACAGGGCTTGGCACCCAACGCTGCCCAAGTGCAAGGCTGGACACTTACCTGTCAACAGCTCCGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
CDS TCA 72 bp CACTCTCCTGTGGTCGTGCTCCACCTCCAACTGCCCTaGGCACGGGGATCAGTTTCCCCAGGGCATCCAGCA +
Preference number: 6 (lower is better)
Translates to: HSPVVVLHLQLP*ARGSVSPGHPA
Trigger: TGCTGGATGCCCTGGGGAAACTGATCCCCGTGCTCAGGGCAGTTGGAGGTGGAGCACGACCACAGGAGAGTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS GCA 72 bp CTGGTCACTCTCCTGTGGTCGTGCTCCACCTCCAACTaGCCTGAGCACGGGGATCAGTTTCCCCAGGGCATC +
Preference number: 6 (lower is better)
Translates to: LVTLLWSCSTSN*PEHGDQFPQGI
Trigger: GATGCCCTGGGGAAACTGATCCCCGTGCTCAGGGCAGTTGGAGGTGGAGCACGACCACAGGAGAGTGACCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS GCA 72 bp GCTGCTGATCCAGCTCCTGGAAGACCATGGCGAAGCTaGCATCCAGGGCCCCCGCATAGGGTAGCACAAGCA +
Preference number: 6 (lower is better)
Translates to: AADPAPGRPWRS*HPGPPHRVAQA
Trigger: TGCTTGTGCTACCCTATGCGGGGGCCCTGGATGGCAGCTTCGCCATGGTCTTCCAGGAGCTGGATCAGCAGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS GCA 72 bp CAGGCAACACAACCTGTGCAAACAGGCCCCGGCGGCTaGGGCGAGCAAGCAGAAAACGCTTGTGGAGCAGAG +
Preference number: 6 (lower is better)
Translates to: QATQPVQTGPGG*GEQAENACGAE
Trigger: CTCTGCTCCACAAGCGTTTTCTGCTTGCTCGCCGCAGCCGCCGGGGCCTGTTTGCACAGGTTGTGTTGCCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS GCA 72 bp GATCCCCTGGCATCTTTGTCCTGCATACTGGGTTCCTaGAGCCCAGCCTCCCCTAGCAGAGCCTCCAGCAGC +
Preference number: 6 (lower is better)
Translates to: DPLASLSCILGS*SPASPSRASSS
Trigger: GCTGCTGGAGGCTCTGCTAGGGGAGGCTGGGCTGCAGGAACCCAGTATGCAGGACAAAGATGCCAGGGGATC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS CCA 72 bp CCACATCCCGTATCAGACGTTCCCGCTCGGGGCCCATaGCGGCTGCACTCACGCCTTTCAAACGGCCATAGA +
Preference number: 6 (lower is better)
Translates to: PHPVSDVPARGP*RLHSRLSNGHR
Trigger: TCTATGGCCGTTTGAAAGGCGTGAGTGCAGCCGCCATGGGCCCCGAGCGGGAACGTCTGATACGGGATGTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS CCA 72 bp GGGACCCACAGCAGCACAAAGAGCCACCTGCCACCATaGCCACGCGATCTCCCAAGAGCTCTGCCTCATCCA +
Preference number: 6 (lower is better)
Translates to: GTHSSTKSHLPP*PRDLPRALPHP
Trigger: TGGATGAGGCAGAGCTCTTGGGAGATCGCGTGGCCATGGTGGCAGGTGGCTCTTTGTGCTGCTGTGGGTCCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS CCA 72 bp GCGGGCTCCAGGCTGACTGCATTGGCAAGCTGGGGATaGAGATTCTGGCGTCCAGTTGCCACTGGCCAGGAT +
Preference number: 6 (lower is better)
Translates to: AGSRLTALASWG*RFWRPVATGQD
Trigger: ATCCTGGCCAGTGGCAACTGGACGCCAGAATCTCCATCCCCAGCTTGCCAATGCAGTCAGCCTGGAGCCCGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS CCA 72 bp CAATGTGCGGACCACCTCATGCCCTGTGGGCAGGTCTaGATCTCGGCCTCCCAGGGAGAAGCCCCCATATCT +
Preference number: 6 (lower is better)
Translates to: QCADHLMPCGQV*ISASQGEAPIS
Trigger: AGATATGGGGGCTTCTCCCTGGGAGGCCGAGATCCAGACCTGCCCACAGGGCATGAGGTGGTCCGCACATTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS CAA 72 bp CAATTGAGGGACAGGCCCCCTGGACTGCTGGGTCCCTaGGTACTGCAGAGGGCCTCCGAAACCAGCTCCAGA +
Preference number: 6 (lower is better)
Translates to: QLRDRPPGLLGP*VLQRASETSSR
Trigger: TCTGGAGCTGGTTTCGGAGGCCCTCTGCAGTACCAAGGGACCCAGCAGTCCAGGGGGCCTGTCCCTCAATTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS CAA 72 bp CAGAGCCCGGAGCTGTTGACAGGTAAGTGTCCAGCCTaGCACTTGGGCAGCGTTGGGTGCCAAGCCCTGTGG +
Preference number: 6 (lower is better)
Translates to: QSPELLTGKCPA*HLGSVGCQALW
Trigger: CCACAGGGCTTGGCACCCAACGCTGCCCAAGTGCAAGGCTGGACACTTACCTGTCAACAGCTCCGGGCTCTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS CAA 72 bp CCGGAGCTGTTGACAGGTAAGTGTCCAGCCTTGCACTaGGGCAGCGTTGGGTGCCAAGCCCTGTGGGGCTTG +
Preference number: 6 (lower is better)
Translates to: PELLTGKCPALH*GSVGCQALWGL
Trigger: CAAGCCCCACAGGGCTTGGCACCCAACGCTGCCCAAGTGCAAGGCTGGACACTTACCTGTCAACAGCTCCGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171637.8
CDS CAA 90 bp TTGTACTGCGGGCAGATGCCCAGGTGGGGCCGGATGGCTGCCATGTaGGTTTGTACATCATGGCCCAGGATGGAGGCCGAGCCACTACTG +
Preference number: 6 (lower is better)
Translates to: LYCGQMPRWGRMAAM*VCTSWPRMEAEPLL
Trigger: CAGTAGTGGCTCGGCCTCCATCCTGGGCCATGATGTACAAACCAACATGGCAGCCATCCGGCCCCACCTGGGCATCTGCCCGCAGTACAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS CAA 90 bp GCGGCGAGCAAGCAGAAAACGCTTGTGGAGCAGAGCCCGGAGCTGTaGACAGGTAAGTGTCCAGCCTTGCACTTGGGCAGCGTTGGGTGC +
Preference number: 6 (lower is better)
Translates to: AASKQKTLVEQSPEL*TGKCPALHLGSVGC
Trigger: GCACCCAACGCTGCCCAAGTGCAAGGCTGGACACTTACCTGTCAACAGCTCCGGGCTCTGCTCCACAAGCGTTTTCTGCTTGCTCGCCGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS TCA 72 bp CATCAAGCAACAGGAAGGCAGACACCTGGGCCAGGCTaGAGACGTCCTCCGCGGGGCCTGTGCCCAAATTGT +
Preference number: 6 (lower is better)
Translates to: HQATGRQTPGPG*RRPPRGLCPNC
Trigger: ACAATTTGGGCACAGGCCCCGCGGAGGACGTCTTCAGCCTGGCCCAGGTGTCTGCCTTCCTGTTGCTTGATG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS GCA 72 bp CCAGCATGTCCTGGATGCTGTGGCCCCCGAGCACTGTaGGGGTATCAGCGAGGAGCCTCGAGATCAAGGAAT +
Preference number: 6 (lower is better)
Translates to: PACPGCCGPRAL*GYQRGASRSRN
Trigger: ATTCCTTGATCTCGAGGCTCCTCGCTGATACCCGCACAGTGCTCGGGGGCCACAGCATCCAGGACATGCTGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS GCA 72 bp GTACTGCGGGCAGATGCCCAGGTGGGGCCGGATGGCTaGCATGTTGGTTTGTACATCATGGCCCAGGATGGA +
Preference number: 6 (lower is better)
Translates to: VLRADAQVGPDG*HVGLYIMAQDG
Trigger: TCCATCCTGGGCCATGATGTACAAACCAACATGGCAGCCATCCGGCCCCACCTGGGCATCTGCCCGCAGTAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS GCA 72 bp CCGTATCAGACGTTCCCGCTCGGGGCCCATGGCGGCTaGACTCACGCCTTTCAAACGGCCATAGAACCAAAC +
Preference number: 6 (lower is better)
Translates to: PYQTFPLGAHGG*THAFQTAIEPN
Trigger: GTTTGGTTCTATGGCCGTTTGAAAGGCGTGAGTGCAGCCGCCATGGGCCCCGAGCGGGAACGTCTGATACGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS CCA 72 bp CTCAGGACCCCAGGCTTCTCGCCAGGCGTTGGGTGCTaGAAGCAGGAGTTGTTTACGTTGCAGACAAGGCCC +
Preference number: 6 (lower is better)
Translates to: LRTPGFSPGVGC*KQELFTLQTRP
Trigger: GGGCCTTGTCTGCAACGTAAACAACTCCTGCTTCCAGCACCCAACGCCTGGCGAGAAGCCTGGGGTCCTGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS CCA 72 bp AAGGGGTGGCTCTTCCACCAGAACCTTGGGATCTTGTaGGGCAGGGGCCAAGACAGAACTCTTGGGAGGCCC +
Preference number: 6 (lower is better)
Translates to: KGWLFHQNLGIL*GRGQDRTLGRP
Trigger: GGGCCTCCCAAGAGTTCTGTCTTGGCCCCTGCCCCACAAGATCCCAAGGTTCTGGTGGAAGAGCCACCCCTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS CCA 72 bp AAGCTGGGGATGGAGATTCTGGCGTCCAGTTGCCACTaGCCAGGATGCTGGCCACATCAGGAGGGACCTCAG +
Preference number: 6 (lower is better)
Translates to: KLGMEILASSCH*PGCWPHQEGPQ
Trigger: CTGAGGTCCCTCCTGATGTGGCCAGCATCCTGGCCAGTGGCAACTGGACGCCAGAATCTCCATCCCCAGCTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS CCA 72 bp AGGCTGACTGCATTGGCAAGCTGGGGATGGAGATTCTaGCGTCCAGTTGCCACTGGCCAGGATGCTGGCCAC +
Preference number: 6 (lower is better)
Translates to: RLTALASWGWRF*RPVATGQDAGH
Trigger: GTGGCCAGCATCCTGGCCAGTGGCAACTGGACGCCAGAATCTCCATCCCCAGCTTGCCAATGCAGTCAGCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS CAA 72 bp ATCTGGCAACAGGCGGCGGGCTCCAGGCTGACTGCATaGGCAAGCTGGGGATGGAGATTCTGGCGTCCAGTT +
Preference number: 6 (lower is better)
Translates to: IWQQAAGSRLTA*ASWGWRFWRPV
Trigger: AACTGGACGCCAGAATCTCCATCCCCAGCTTGCCAATGCAGTCAGCCTGGAGCCCGCCGCCTGTTGCCAGAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS CAA 90 bp TTTCTCTGCATTCCACCAGAGAGGTGGCGTGTCTGTGTGTCCCGCTaGAGGGTAAGCCCCACATCCCGTATCAGACGTTCCCGCTCGGGG +
Preference number: 6 (lower is better)
Translates to: FLCIPPERWRVCVSR*RVSPTSRIRRSRSG
Trigger: CCCCGAGCGGGAACGTCTGATACGGGATGTGGGGCTTACCCTCAAGCGGGACACACAGACACGCCACCTCTCTGGTGGAATGCAGAGAAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS CAA 90 bp CCTCCCAGGGAGAAGCCCCCATATCTGACCTCATCCACCCACTTCTaGGTCTTTAGGCCTCGGCGCACCAGGCTGGGGTATGTCTTCACC +
Preference number: 6 (lower is better)
Translates to: PPREKPPYLTSSTHF*VFRPRRTRLGYVFT
Trigger: GGTGAAGACATACCCCAGCCTGGTGCGCCGAGGCCTAAAGACCAAGAAGTGGGTGGATGAGGTCAGATATGGGGGCTTCTCCCTGGGAGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS TCA 72 bp TTAGAGTCAGTGTGTGGCCAGCCCCGAACCTGCCTTTaGGATGCTGAGAGCTTCCCAGACAGCGGAACCGCC +
Preference number: 6 (lower is better)
Translates to: LESVCGQPRTCL*DAESFPDSGTA
Trigger: GGCGGTTCCGCTGTCTGGGAAGCTCTCAGCATCTCAAAGGCAGGTTCGGGGCTGGCCACACACTGACTCTAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS GCA 72 bp TTACGTTGCAGACAAGGCCCTGCAGCCAGGGCACCGTaGCCGCCGATGGTAATGGCTTGTTTGGAAAGTGGC +
Preference number: 6 (lower is better)
Translates to: LRCRQGPAARAP*PPMVMACLESG
Trigger: GCCACTTTCCAAACAAGCCATTACCATCGGCGGGCACGGTGCCCTGGCTGCAGGGCCTTGTCTGCAACGTAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS GCA 72 bp AGGTCCTCCACGAGTTGTGCTCCAGGCACATGCTGCTaGACTAGCTCTAGTATCCGGGCTGTGCTTGGGGTG +
Preference number: 6 (lower is better)
Translates to: RSSTSCAPGTCC*TSSSIRAVLGV
Trigger: CACCCCAAGCACAGCCCGGATACTAGAGCTAGTGCAGCAGCATGTGCCTGGAGCACAACTCGTGGAGGACCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS CCA 72 bp CACCCGCAGGAACACATCATCCACGTAGCAGGGGTGTaGCATCTGCTGCAGGTAGAGACCTGTGCGGGAGTT +
Preference number: 6 (lower is better)
Translates to: HPQEHIIHVAGV*HLLQVETCAGV
Trigger: AACTCCCGCACAGGTCTCTACCTGCAGCAGATGCCACACCCCTGCTACGTGGATGATGTGTTCCTGCGGGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS CCA 72 bp CATTGTACTGCGGGCAGATGCCCAGGTGGGGCCGGATaGCTGCCATGTTGGTTTGTACATCATGGCCCAGGA +
Preference number: 6 (lower is better)
Translates to: HCTAGRCPGGAG*LPCWFVHHGPG
Trigger: TCCTGGGCCATGATGTACAAACCAACATGGCAGCCATCCGGCCCCACCTGGGCATCTGCCCGCAGTACAATG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS CCA 72 bp ACCAAAAAGTCAGACACATTTCGGCCAGTGAGGTTCTaGACCACCTCCCCCAAGCCAGCCACAGCCTGGGGG +
Preference number: 6 (lower is better)
Translates to: TKKSDTFRPVRF*TTSPKPATAWG
Trigger: CCCCCAGGCTGTGGCTGGCTTGGGGGAGGTGGTCCAGAACCTCACTGGCCGAAATGTGTCTGACTTTTTGGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS CAA 90 bp GCATGGCGGACTGGACCAGATGGTAGGAGGGCATGTAGGAGTCCATaGTTGGCTCGGTTCACAAAGGCCACCATGGCATGCCAGCCCTTG +
Preference number: 6 (lower is better)
Translates to: AWRTGPDGRRACRSP*LARFTKATMACQPL
Trigger: CAAGGGCTGGCATGCCATGGTGGCCTTTGTGAACCGAGCCAACAATGGACTCCTACATGCCCTCCTACCATCTGGTCCAGTCCGCCATGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS CAA 90 bp TGGCGGACTGGACCAGATGGTAGGAGGGCATGTAGGAGTCCATTGTaGGCTCGGTTCACAAAGGCCACCATGGCATGCCAGCCCTTGTTG +
Preference number: 6 (lower is better)
Translates to: WRTGPDGRRACRSPL*ARFTKATMACQPLL
Trigger: CAACAAGGGCTGGCATGCCATGGTGGCCTTTGTGAACCGAGCCAACAATGGACTCCTACATGCCCTCCTACCATCTGGTCCAGTCCGCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS CAA 90 bp TCTTCCAGGAATCGGCTGACACGTTTGGGATGCTGCCGGCCAGGTTaGGAAACCTCCTCTTCTTCAGCCTCCTGCCGACTGCTCTCTTCC +
Preference number: 6 (lower is better)
Translates to: SSRNRLTRLGCCRPG*ETSSSSASCRLLSS
Trigger: GGAAGAGAGCAGTCGGCAGGAGGCTGAAGAAGAGGAGGTTTCCAAACCTGGCCGGCAGCATCCCAAACGTGTCAGCCGATTCCTGGAAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS CAA 90 bp ATGGTCTCCACAGAGCTGGGGTCTTCCAGGAATCGGCTGACACGTTaGGGATGCTGCCGGCCAGGTTTGGAAACCTCCTCTTCTTCAGCC +
Preference number: 6 (lower is better)
Translates to: MVSTELGSSRNRLTR*GCCRPGLETSSSSA
Trigger: GGCTGAAGAAGAGGAGGTTTCCAAACCTGGCCGGCAGCATCCCAAACGTGTCAGCCGATTCCTGGAAGACCCCAGCTCTGTGGAGACCAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS TCA 72 bp AGCAGAAAACGCTTGTGGAGCAGAGCCCGGAGCTGTTaGCAGGTAAGTGTCCAGCCTTGCACTTGGGCAGCG +
Preference number: 6 (lower is better)
Translates to: SRKRLWSRARSC*QVSVQPCTWAA
Trigger: CGCTGCCCAAGTGCAAGGCTGGACACTTACCTGTCAACAGCTCCGGGCTCTGCTCCACAAGCGTTTTCTGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS TCA 72 bp GGCTGTTCCGAGCATCAAGGCCAAGGGCCCACTGAGTaGGGTTGTTCAGGATACGGTCTAGCGCATTCCCAG +
Preference number: 6 (lower is better)
Translates to: GCSEHQGQGPTE*GCSGYGLAHSQ
Trigger: CTGGGAATGCGCTAGACCGTATCCTGAACAACCTCACTCAGTGGGCCCTTGGCCTTGATGCTCGGAACAGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS TCA 72 bp TGGTCTCCACAGAGCTGGGGTCTTCCAGGAATCGGCTaGCACGTTTGGGATGCTGCCGGCCAGGTTTGGAAA +
Preference number: 6 (lower is better)
Translates to: WSPQSWGLPGIG*HVWDAAGQVWK
Trigger: TTTCCAAACCTGGCCGGCAGCATCCCAAACGTGTCAGCCGATTCCTGGAAGACCCCAGCTCTGTGGAGACCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS GCA 72 bp AGGTGCAGCTGCGGTCTAGAGTCCCCACCTTCTCTGTaGGCATCCTCCACCACCTTTAGGAAGATCTCCTCC +
Preference number: 6 (lower is better)
Translates to: RCSCGLESPPSL*ASSTTFRKISS
Trigger: GGAGGAGATCTTCCTAAAGGTGGTGGAGGATGCGCACAGAGAAGGTGGGGACTCTAGACCGCAGCTGCACCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS GCA 72 bp GGGTCTTCCAGGAATCGGCTGACACGTTTGGGATGCTaGCGGCCAGGTTTGGAAACCTCCTCTTCTTCAGCC +
Preference number: 6 (lower is better)
Translates to: GSSRNRLTRLGC*RPGLETSSSSA
Trigger: GGCTGAAGAAGAGGAGGTTTCCAAACCTGGCCGGCAGCATCCCAAACGTGTCAGCCGATTCCTGGAAGACCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS CCA 72 bp GCTGAGACTGTTGTCAGGCAGGGCAGGGGCCACCTCTaGCCCCATGAACTCATTAAGCTGGTTGGCTTCGTA +
Preference number: 6 (lower is better)
Translates to: AETVVRQGRGHL*PHELIKLVGFV
Trigger: TACGAAGCCAACCAGCTTAATGAGTTCATGGGGCCAGAGGTGGCCCCTGCCCTGCCTGACAACAGTCTCAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS CCA 72 bp TGGCTGCCATGTTGGTTTGTACATCATGGCCCAGGATaGAGGCCGAGCCACTACTGGGTGGGAAGAGACCAC +
Preference number: 6 (lower is better)
Translates to: WLPCWFVHHGPG*RPSHYWVGRDH
Trigger: GTGGTCTCTTCCCACCCAGTAGTGGCTCGGCCTCCATCCTGGGCCATGATGTACAAACCAACATGGCAGCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS CCA 72 bp CTGAGGGCCATACATAGCAGGGCTGAGCTGCAGGGGTaGGTACTGGCCAAAAGGAGGCACAATGAGGCTGAA +
Preference number: 6 (lower is better)
Translates to: LRAIHSRAELQG*VLAKRRHNEAE
Trigger: TTCAGCCTCATTGTGCCTCCTTTTGGCCAGTACCCACCCCTGCAGCTCAGCCCTGCTATGTATGGCCCTCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS CAA 72 bp ATTCCACCAGAGAGGTGGCGTGTCTGTGTGTCCCGCTaGAGGGTAAGCCCCACATCCCGTATCAGACGTTCC +
Preference number: 6 (lower is better)
Translates to: IPPERWRVCVSR*RVSPTSRIRRS
Trigger: GGAACGTCTGATACGGGATGTGGGGCTTACCCTCAAGCGGGACACACAGACACGCCACCTCTCTGGTGGAAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS CAA 72 bp GCTAGGGAGTGTGTACACTCAGATCCCCTGGCATCTTaGTCCTGCATACTGGGTTCCTGCAGCCCAGCCTCC +
Preference number: 6 (lower is better)
Translates to: ARECVHSDPLAS*SCILGSCSPAS
Trigger: GGAGGCTGGGCTGCAGGAACCCAGTATGCAGGACAAAGATGCCAGGGGATCTGAGTGTACACACTCCCTAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS CAA 72 bp GAGAAGCCCCCATATCTGACCTCATCCACCCACTTCTaGGTCTTTAGGCCTCGGCGCACCAGGCTGGGGTAT +
Preference number: 6 (lower is better)
Translates to: EKPPYLTSSTHF*VFRPRRTRLGY
Trigger: ATACCCCAGCCTGGTGCGCCGAGGCCTAAAGACCAAGAAGTGGGTGGATGAGGTCAGATATGGGGGCTTCTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS CAA 72 bp AATCGGCTGACACGTTTGGGATGCTGCCGGCCAGGTTaGGAAACCTCCTCTTCTTCAGCCTCCTGCCGACTG +
Preference number: 6 (lower is better)
Translates to: NRLTRLGCCRPG*ETSSSSASCRL
Trigger: CAGTCGGCAGGAGGCTGAAGAAGAGGAGGTTTCCAAACCTGGCCGGCAGCATCCCAAACGTGTCAGCCGATT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS GCA 72 bp TTACTCAGGACCCCAGGCTTCTCGCCAGGCGTTGGGTaGTGGAAGCAGGAGTTGTTTACGTTGCAGACAAGG +
Preference number: 6 (lower is better)
Translates to: LLRTPGFSPGVG*WKQELFTLQTR
Trigger: CCTTGTCTGCAACGTAAACAACTCCTGCTTCCAGCACCCAACGCCTGGCGAGAAGCCTGGGGTCCTGAGTAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS CCA 72 bp CGGAGCTCCATCAGGCTGGGCAGTGTCAGGAGCTCCTaGGCAAGATCCCTGATAGCATCTGAGAACTTTCTC +
Preference number: 6 (lower is better)
Translates to: RSSIRLGSVRSS*ARSLIASENFL
Trigger: GAGAAAGTTCTCAGATGCTATCAGGGATCTTGCCCAGGAGCTCCTGACACTGCCCAGCCTGATGGAGCTCCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS CCA 72 bp GCCACAGAAAGTTTTCTCTGCATTCCACCAGAGAGGTaGCGTGTCTGTGTGTCCCGCTTGAGGGTAAGCCCC +
Preference number: 6 (lower is better)
Translates to: ATESFLCIPPER*RVCVSRLRVSP
Trigger: GGGGCTTACCCTCAAGCGGGACACACAGACACGCCACCTCTCTGGTGGAATGCAGAGAAAACTTTCTGTGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS CCA 72 bp GACCAGATGGTAGGAGGGCATGTAGGAGTCCATTGTTaGCTCGGTTCACAAAGGCCACCATGGCATGCCAGC +
Preference number: 6 (lower is better)
Translates to: DQMVGGHVGVHC*LGSQRPPWHAS
Trigger: GCTGGCATGCCATGGTGGCCTTTGTGAACCGAGCCAACAATGGACTCCTACATGCCCTCCTACCATCTGGTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS CAA 72 bp CCCATGAACTCATTAAGCTGGTTGGCTTCGTACCAATaGAGGGACAGGCCCCCTGGACTGCTGGGTCCCTTG +
Preference number: 6 (lower is better)
Translates to: PMNSLSWLASYQ*RDRPPGLLGPL
Trigger: CAAGGGACCCAGCAGTCCAGGGGGCCTGTCCCTCAATTGGTACGAAGCCAACCAGCTTAATGAGTTCATGGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS CAA 72 bp AAGCAGAAAACGCTTGTGGAGCAGAGCCCGGAGCTGTaGACAGGTAAGTGTCCAGCCTTGCACTTGGGCAGC +
Preference number: 6 (lower is better)
Translates to: KQKTLVEQSPEL*TGKCPALHLGS
Trigger: GCTGCCCAAGTGCAAGGCTGGACACTTACCTGTCAACAGCTCCGGGCTCTGCTCCACAAGCGTTTTCTGCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS CAA 72 bp GGACCAGATGGTAGGAGGGCATGTAGGAGTCCATTGTaGGCTCGGTTCACAAAGGCCACCATGGCATGCCAG +
Preference number: 6 (lower is better)
Translates to: GPDGRRACRSPL*ARFTKATMACQ
Trigger: CTGGCATGCCATGGTGGCCTTTGTGAACCGAGCCAACAATGGACTCCTACATGCCCTCCTACCATCTGGTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS TCA 72 bp GGTACACGAAGCCTCCCCACACATACCGAAGGTCCATaGAAGGATCTGCTGACGGACCTGGGTCCCAAAACT +
Preference number: 6 (lower is better)
Translates to: GTRSLPTHTEGP*KDLLTDLGPKT
Trigger: AGTTTTGGGACCCAGGTCCGTCAGCAGATCCTTTCATGGACCTTCGGTATGTGTGGGGAGGCTTCGTGTACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS TCA 72 bp ACGCGATCTCCCAAGAGCTCTGCCTCATCCAGGTGGTaGGTGGAGAGAATCAGTGTCCGACCTTCTCTGTAC +
Preference number: 6 (lower is better)
Translates to: TRSPKSSASSRW*VERISVRPSLY
Trigger: GTACAGAGAAGGTCGGACACTGATTCTCTCCACTCACCACCTGGATGAGGCAGAGCTCTTGGGAGATCGCGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS TCA 72 bp GTCCCTGGGCCATCATGGCCAGGAGGTTCTTGCCAATaGTGTCCCAGCGTAGGGGTGACTGAAATTGCTTGT +
Preference number: 6 (lower is better)
Translates to: VPGPSWPGGSCQ*CPSVGVTEIAC
Trigger: ACAAGCAATTTCAGTCACCCCTACGCTGGGACATCATTGGCAAGAACCTCCTGGCCATGATGGCCCAGGGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS CCA 72 bp AAAGTTACTCAGGACCCCAGGCTTCTCGCCAGGCGTTaGGTGCTGGAAGCAGGAGTTGTTTACGTTGCAGAC +
Preference number: 6 (lower is better)
Translates to: KVTQDPRLLARR*VLEAGVVYVAD
Trigger: GTCTGCAACGTAAACAACTCCTGCTTCCAGCACCCAACGCCTGGCGAGAAGCCTGGGGTCCTGAGTAACTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS CCA 72 bp TGTGTCAGGTGCAAAGAGAATTTTCCCGAGGATCAATaGCTTCAGGCGCCTCCAGAGCAGCCGAGACACAGG +
Preference number: 6 (lower is better)
Translates to: CVRCKENFPEDQ*LQAPPEQPRHR
Trigger: CCTGTGTCTCGGCTGCTCTGGAGGCGCCTGAAGCCATTGATCCTCGGGAAAATTCTCTTTGCACCTGACACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS CCA 72 bp CTTGGTTTTGATTGTGGCAGGAGACGGTTGCGGTGTTaGAGCAGGAGTGTGATGAGGAGGAACAGAGGTCCC +
Preference number: 6 (lower is better)
Translates to: LGFDCGRRRLRC*SRSVMRRNRGP
Trigger: GGGACCTCTGTTCCTCCTCATCACACTCCTGCTCCAACACCGCAACCGTCTCCTGCCACAATCAAAACCAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS CCA 72 bp TTGGAGAAATATAGGAACACCTCCTCCAGAGTGGTCTaGCTCACAGAGAAGTCCTCCACACCGTGGGCCCTG +
Preference number: 6 (lower is better)
Translates to: LEKYRNTSSRVV*LTEKSSTPWAL
Trigger: CAGGGCCCACGGTGTGGAGGACTTCTCTGTGAGCCAGACCACTCTGGAGGAGGTGTTCCTATATTTCTCCAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS CAA 72 bp GACACAAGAGCTTCCTCTGAGGGCACAGCCTCCAGCTaGTCCAGGGACACACACTCCATCATTTGTCCTAGG +
Preference number: 6 (lower is better)
Translates to: DTRASSEGTASS*SRDTHSIICPR
Trigger: CCTAGGACAAATGATGGAGTGTGTGTCCCTGGACAAGCTGGAGGCTGTGCCCTCAGAGGAAGCTCTTGTGTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS CAA 72 bp ACTGGACCAGATGGTAGGAGGGCATGTAGGAGTCCATaGTTGGCTCGGTTCACAAAGGCCACCATGGCATGC +
Preference number: 6 (lower is better)
Translates to: TGPDGRRACRSP*LARFTKATMAC
Trigger: GCATGCCATGGTGGCCTTTGTGAACCGAGCCAACAATGGACTCCTACATGCCCTCCTACCATCTGGTCCAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS GCA 72 bp CCATTGTTGGCTCGGTTCACAAAGGCCACCATGGCATaGCAGCCCTTGTTGTTGAACCAGATCTTGAGGCTG +
Preference number: 6 (lower is better)
Translates to: PLLARFTKATMA*QPLLLNQILRL
Trigger: CAGCCTCAAGATCTGGTTCAACAACAAGGGCTGGCATGCCATGGTGGCCTTTGTGAACCGAGCCAACAATGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS CCA 72 bp TCCACACCAGTAGCTCCTCCGAAAAGGGAAATTCCATaGTTCAGGGATTCCATACTGGCCTGGGCACACAGC +
Preference number: 6 (lower is better)
Translates to: STPVAPPKREIP*FRDSILAWAHS
Trigger: GCTGTGTGCCCAGGCCAGTATGGAATCCCTGAACCATGGAATTTCCCTTTTCGGAGGAGCTACTGGTGTGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS CCA 72 bp AGTAGCAAGCTAGGGAGTGTGTACACTCAGATCCCCTaGCATCTTTGTCCTGCATACTGGGTTCCTGCAGCC +
Preference number: 6 (lower is better)
Translates to: SSKLGSVYTQIP*HLCPAYWVPAA
Trigger: GGCTGCAGGAACCCAGTATGCAGGACAAAGATGCCAGGGGATCTGAGTGTACACACTCCCTAGCTTGCTACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS CCA 72 bp GGTCTTTGGAGAAATATAGGAACACCTCCTCCAGAGTaGTCTGGCTCACAGAGAAGTCCTCCACACCGTGGG +
Preference number: 6 (lower is better)
Translates to: GLWRNIGTPPPE*SGSQRSPPHRG
Trigger: CCCACGGTGTGGAGGACTTCTCTGTGAGCCAGACCACTCTGGAGGAGGTGTTCCTATATTTCTCCAAAGACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS CAA 90 bp CAAAAAGGCAGTGATGTGGCCTTCGTAGAAGTCAAGGTTGAGTCCTaGCAGGGCTGGCTGCGGACAGCCACGAAAATGTTTCTTCAGGCC +
Preference number: 6 (lower is better)
Translates to: QKGSDVAFVEVKVES*QGWLRTATKMFLQA
Trigger: GGCCTGAAGAAACATTTTCGTGGCTGTCCGCAGCCAGCCCTGCAAGGACTCAACCTTGACTTCTACGAAGGCCACATCACTGCCTTTTTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS TCA 72 bp TCCCCACACATACCGAAGGTCCATGAAAGGATCTGCTaGCGGACCTGGGTCCCAAAACTTGTCCCTGATCTT +
Preference number: 6 (lower is better)
Translates to: SPHIPKVHERIC*RTWVPKLVPDL
Trigger: AAGATCAGGGACAAGTTTTGGGACCCAGGTCCGTCAGCAGATCCTTTCATGGACCTTCGGTATGTGTGGGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS CCA 72 bp CCCACTTCTTGGTCTTTAGGCCTCGGCGCACCAGGCTaGGGTATGTCTTCACCAAAAAGTCAGACACATTTC +
Preference number: 6 (lower is better)
Translates to: PTSWSLGLGAPG*GMSSPKSQTHF
Trigger: GAAATGTGTCTGACTTTTTGGTGAAGACATACCCCAGCCTGGTGCGCCGAGGCCTAAAGACCAAGAAGTGGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS CCA 72 bp CCTGCCGACTGCTCTCTTCCTCTTCCCCTTGGTCTTTaGAGAAATATAGGAACACCTCCTCCAGAGTGGTCT +
Preference number: 6 (lower is better)
Translates to: PADCSLPLPLGL*RNIGTPPPEWS
Trigger: AGACCACTCTGGAGGAGGTGTTCCTATATTTCTCCAAAGACCAAGGGGAAGAGGAAGAGAGCAGTCGGCAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS CAA 72 bp AGTGATGTGGCCTTCGTAGAAGTCAAGGTTGAGTCCTaGCAGGGCTGGCTGCGGACAGCCACGAAAATGTTT +
Preference number: 6 (lower is better)
Translates to: SDVAFVEVKVES*QGWLRTATKMF
Trigger: AAACATTTTCGTGGCTGTCCGCAGCCAGCCCTGCAAGGACTCAACCTTGACTTCTACGAAGGCCACATCACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS TCA 72 bp AGGTTCTTGCCAATGATGTCCCAGCGTAGGGGTGACTaGAATTGCTTGTCTCCTAAGCGCTCAAAGGCATCT +
Preference number: 6 (lower is better)
Translates to: RFLPMMSQRRGD*NCLSPKRSKAS
Trigger: AGATGCCTTTGAGCGCTTAGGAGACAAGCAATTTCAGTCACCCCTACGCTGGGACATCATTGGCAAGAACCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS CCA 72 bp ACATCATCGATATCCATTCGAATCTTGAATCGTAGGTaGCCAGGACTCAGGGCTGGAGATGACAGTTCGGAT +
Preference number: 6 (lower is better)
Translates to: TSSISIRILNRR*PGLRAGDDSSD
Trigger: ATCCGAACTGTCATCTCCAGCCCTGAGTCCTGGCCACCTACGATTCAAGATTCGAATGGATATCGATGATGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS CAA 72 bp TTGGTCCTTGTGACATCATCGATATCCATTCGAATCTaGAATCGTAGGTGGCCAGGACTCAGGGCTGGAGAT +
Preference number: 6 (lower is better)
Translates to: LVLVTSSISIRI*NRRWPGLRAGD
Trigger: ATCTCCAGCCCTGAGTCCTGGCCACCTACGATTCAAGATTCGAATGGATATCGATGATGTCACAAGGACCAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS CAA 72 bp ATGAAAGGATCTGCTGACGGACCTGGGTCCCAAAACTaGTCCCTGATCTTATTGGTCCTTGTGACATCATCG +
Preference number: 6 (lower is better)
Translates to: MKGSADGPGSQN*SLILLVLVTSS
Trigger: CGATGATGTCACAAGGACCAATAAGATCAGGGACAAGTTTTGGGACCCAGGTCCGTCAGCAGATCCTTTCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS CAA 90 bp CTGATCTTATTGGTCCTTGTGACATCATCGATATCCATTCGAATCTaGAATCGTAGGTGGCCAGGACTCAGGGCTGGAGATGACAGTTCG +
Preference number: 6 (lower is better)
Translates to: LILLVLVTSSISIRI*NRRWPGLRAGDDSS
Trigger: CGAACTGTCATCTCCAGCCCTGAGTCCTGGCCACCTACGATTCAAGATTCGAATGGATATCGATGATGTCACAAGGACCAATAAGATCAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS CAA 90 bp CGAAGGTCCATGAAAGGATCTGCTGACGGACCTGGGTCCCAAAACTaGTCCCTGATCTTATTGGTCCTTGTGACATCATCGATATCCATT +
Preference number: 6 (lower is better)
Translates to: RRSMKGSADGPGSQN*SLILLVLVTSSISI
Trigger: AATGGATATCGATGATGTCACAAGGACCAATAAGATCAGGGACAAGTTTTGGGACCCAGGTCCGTCAGCAGATCCTTTCATGGACCTTCG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS CAA 90 bp GGATCTGCTGACGGACCTGGGTCCCAAAACTTGTCCCTGATCTTATaGGTCCTTGTGACATCATCGATATCCATTCGAATCTTGAATCGT +
Preference number: 6 (lower is better)
Translates to: GSADGPGSQNLSLIL*VLVTSSISIRILNR
Trigger: ACGATTCAAGATTCGAATGGATATCGATGATGTCACAAGGACCAATAAGATCAGGGACAAGTTTTGGGACCCAGGTCCGTCAGCAGATCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS GCA 72 bp TCCACAGAGGAGGCTATCAGTGTAGCTTCAGATAGCTaGTCCTTGGTCAAGTTCAAAGGATGGTTGAGTGTA +
Preference number: 6 (lower is better)
Translates to: STEEAISVASDS*SLVKFKGWLSV
Trigger: TACACTCAACCATCCTTTGAACTTGACCAAGGAGCAGCTATCTGAAGCTACACTGATAGCCTCCTCTGTGGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8
CDS CAA 72 bp GACGGACCTGGGTCCCAAAACTTGTCCCTGATCTTATaGGTCCTTGTGACATCATCGATATCCATTCGAATC +
Preference number: 6 (lower is better)
Translates to: DGPGSQNLSLIL*VLVTSSISIRI
Trigger: GATTCGAATGGATATCGATGATGTCACAAGGACCAATAAGATCAGGGACAAGTTTTGGGACCCAGGTCCGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043866.8
ENSMUST00000132517.8
ENSMUST00000171637.8