RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ABCA3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000024130

Ensembl transcript IDs: ENSMUST00000039013.15, ENSMUST00000079594.12, ENSMUST00000117337.2

Found 553 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CCCCAGGCTAGCTGCAGTACCAGCTGGGACCAAGGCCTGTCTGTGTaGACAGCAGGATGGGGTCTGGGACTGTGGTTCCAGAGACCTGAC +
Preference number: 1 (lower is better)
Translates to: PQASCSTSWDQGLSV*TAGWGLGLWFQRPD
Trigger: GTCAGGTCTCTGGAACCACAGTCCCAGACCCCATCCTGCTGTGCACACAGACAGGCCTTGGTCCCAGCTGGTACTGCAGCTAGCCTGGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
3UTR CCA 90 bp GCACTGGAAAGAAGCTCAATCCCCCAGGCTAGCTGCAGTACCAGCTaGGACCAAGGCCTGTCTGTGTGCACAGCAGGATGGGGTCTGGGA +
Preference number: 1 (lower is better)
Translates to: ALERSSIPQASCSTS*DQGLSVCTAGWGLG
Trigger: TCCCAGACCCCATCCTGCTGTGCACACAGACAGGCCTTGGTCCCAGCTGGTACTGCAGCTAGCCTGGGGGATTGAGCTTCTTTCCAGTGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
3UTR CCA 90 bp TGCAGTACCAGCTGGGACCAAGGCCTGTCTGTGTGCACAGCAGGATaGGGTCTGGGACTGTGGTTCCAGAGACCTGACTTCAGGAGTGGA +
Preference number: 1 (lower is better)
Translates to: CSTSWDQGLSVCTAG*GLGLWFQRPDFRSG
Trigger: TCCACTCCTGAAGTCAGGTCTCTGGAACCACAGTCCCAGACCCCATCCTGCTGTGCACACAGACAGGCCTTGGTCCCAGCTGGTACTGCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
3UTR CCA 90 bp GACCAAGGCCTGTCTGTGTGCACAGCAGGATGGGGTCTGGGACTGTaGTTCCAGAGACCTGACTTCAGGAGTGGAAACCTGCATGCTGAC +
Preference number: 1 (lower is better)
Translates to: DQGLSVCTAGWGLGL*FQRPDFRSGNLHAD
Trigger: GTCAGCATGCAGGTTTCCACTCCTGAAGTCAGGTCTCTGGAACCACAGTCCCAGACCCCATCCTGCTGTGCACACAGACAGGCCTTGGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
3UTR CCA 90 bp GCTTCAAGTCTGGCCACAGCTCTCTCTTGTGCTGCCGATGCTCTGTaGGATGACATCTGGCTCAGGATCAGATCAGCCCGGTCCACTGTC +
Preference number: 1 (lower is better)
Translates to: ASSLATALSCAADAL*DDIWLRIRSARSTV
Trigger: GACAGTGGACCGGGCTGATCTGATCCTGAGCCAGATGTCATCCCACAGAGCATCGGCAGCACAAGAGAGAGCTGTGGCCAGACTTGAAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
3UTR CCA 90 bp CTTCTTGAAGGCACAGAGCTAGGAACAGAGGATGTGCTTCAAGTCTaGCCACAGCTCTCTCTTGTGCTGCCGATGCTCTGTGGGATGACA +
Preference number: 1 (lower is better)
Translates to: LLEGTELGTEDVLQV*PQLSLVLPMLCGMT
Trigger: TGTCATCCCACAGAGCATCGGCAGCACAAGAGAGAGCTGTGGCCAGACTTGAAGCACATCCTCTGTTCCTAGCTCTGTGCCTTCAAGAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
3UTR TCA 90 bp ACTTCAGGAGTGGAAACCTGCATGCTGACTCCTGCCTGCAGGCACTaGCAGACACACATGGTCCACTTTGTGCATATCACCTTGATTGTT +
Preference number: 1 (lower is better)
Translates to: TSGVETCMLTPACRH*QTHMVHFVHITLIV
Trigger: AACAATCAAGGTGATATGCACAAAGTGGACCATGTGTGTCTGTCAGTGCCTGCAGGCAGGAGTCAGCATGCAGGTTTCCACTCCTGAAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
3UTR TCA 90 bp AGCCAATGGTCTCAGCACCTAGTCATAGCCAGTATCTTCCCTTCATaGAGGTATTTGCAACTTTGCTGCTCATTCCTGGCAGCCTGGAAG +
Preference number: 1 (lower is better)
Translates to: SQWSQHLVIASIFPS*RYLQLCCSFLAAWK
Trigger: CTTCCAGGCTGCCAGGAATGAGCAGCAAAGTTGCAAATACCTTCATGAAGGGAAGATACTGGCTATGACTAGGTGCTGAGACCATTGGCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
3UTR-3UTR TCA 90 bp GGCCTGTCTGTGTGCACAGCAGGATGGGGTCTGGGACTGTGGTTCCAGAGACCTTGGAAACCTGCATGCTaGCTCCTGCCTGCAGGCACT +
Preference number: 2 (lower is better)
Translates to: GLSVCTAGWGLGLWFQRPWKPAC*LLPAGT
Trigger: AGTGCCTGCAGGCAGGAGTCAGCATGCAGGTTTCCA...AGGTCTCTGGAACCACAGTCCCAGACCCCATCCTGCTGTGCACACAGACAGGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
3UTR-3UTR GCA 90 bp GCTTCAAGTCTGGCCACAGCTCTCTCTTGTGCTGCCGATGCTCTGTGGGATGACCCCTTCCACGCCTGGTaGTCTGGAGGCAGCAGAGCT +
Preference number: 2 (lower is better)
Translates to: ASSLATALSCAADALWDDPFHAW*SGGSRA
Trigger: AGCTCTGCTGCCTCCAGAGCACCAGGCGTGGAAGGG...GTCATCCCACAGAGCATCGGCAGCACAAGAGAGAGCTGTGGCCAGACTTGAAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
3UTR-3UTR GCA 90 bp AGGTCCCTGGGGTCTCTCTGGATAAGCACTGGAAAGAAGCTCAATCCCCCAGGCCCCTTCCACGCCTGGTaGTCTGGAGGCAGCAGAGCT +
Preference number: 2 (lower is better)
Translates to: RSLGSLWISTGKKLNPPGPFHAW*SGGSRA
Trigger: AGCTCTGCTGCCTCCAGAGCACCAGGCGTGGAAGGG...GCCTGGGGGATTGAGCTTCTTTCCAGTGCTTATCCAGAGAGACCCCAGGGACCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
3UTR-3UTR CCA 90 bp GGGGTCTGGGACTGTGGTTCCAGAGACCTGACTTCAGGAGTGGAAACCTGCATGTGCCCCTTCCACGCCTaGTGCTCTGGAGGCAGCAGA +
Preference number: 2 (lower is better)
Translates to: GVWDCGSRDLTSGVETCMCPFHA*CSGGSR
Trigger: TCTGCTGCCTCCAGAGCACCAGGCGTGGAAGGGGCA...CATGCAGGTTTCCACTCCTGAAGTCAGGTCTCTGGAACCACAGTCCCAGACCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
3UTR-3UTR TCA 90 bp GCTCTGTGGGATGACATCTGGCTCAGGATCAGATCAGCCCGGTCCACTGTCCATTGGAAACCTGCATGCTaGCTCCTGCCTGCAGGCACT +
Preference number: 2 (lower is better)
Translates to: ALWDDIWLRIRSARSTVHWKPAC*LLPAGT
Trigger: AGTGCCTGCAGGCAGGAGTCAGCATGCAGGTTTCCA...ATGGACAGTGGACCGGGCTGATCTGATCCTGAGCCAGATGTCATCCCACAGAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
3UTR-3UTR TCA 90 bp ATCCCCCAGGCTAGCTGCAGTACCAGCTGGGACCAAGGCCTGTCTGTGTGCACAGTGGTTCCAGAGACCTaGCTTCAGGAGTGGAAACCT +
Preference number: 2 (lower is better)
Translates to: IPQASCSTSWDQGLSVCTVVPET*LQEWKP
Trigger: AGGTTTCCACTCCTGAAGTCAGGTCTCTGGAACCAC...TGTGCACACAGACAGGCCTTGGTCCCAGCTGGTACTGCAGCTAGCCTGGGGGAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
3UTR-3UTR CCA 90 bp GCTCTGTGGGATGACATCTGGCTCAGGATCAGATCAGCCCGGTCCACTGTCCATAGCTGCAGTACCAGCTaGGACCAAGGCCTGTCTGTG +
Preference number: 2 (lower is better)
Translates to: ALWDDIWLRIRSARSTVHSCSTS*DQGLSV
Trigger: CACAGACAGGCCTTGGTCCCAGCTGGTACTGCAGCT...ATGGACAGTGGACCGGGCTGATCTGATCCTGAGCCAGATGTCATCCCACAGAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
3UTR-3UTR GCA 90 bp GCTCTGTGGGATGACATCTGGCTCAGGATCAGATCAGCCCGGTCCACTGTCCATTCAGGAGTGGAAACCTaGATGCTGACTCCTGCCTGC +
Preference number: 2 (lower is better)
Translates to: ALWDDIWLRIRSARSTVHSGVET*MLTPAC
Trigger: GCAGGCAGGAGTCAGCATGCAGGTTTCCACTCCTGA...ATGGACAGTGGACCGGGCTGATCTGATCCTGAGCCAGATGTCATCCCACAGAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
3UTR-3UTR CCA 90 bp CATTCCTGGCAGCCTGGAAGTCCTTGTTGCTGCTCAACCCTGTTGGCTTTCTTTTGCCCCTTCCACGCCTaGTGCTCTGGAGGCAGCAGA +
Preference number: 2 (lower is better)
Translates to: HSWQPGSPCCCSTLLAFFCPFHA*CSGGSR
Trigger: TCTGCTGCCTCCAGAGCACCAGGCGTGGAAGGGGCA...AAAGAAAGCCAACAGGGTTGAGCAGCAACAAGGACTTCCAGGCTGCCAGGAATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
3UTR-3UTR CCA 90 bp AGGTCCCTGGGGTCTCTCTGGATAAGCACTGGAAAGAAGCTCAATCCCCCAGGCTGGGGTCTGGGACTGTaGTTCCAGAGACCTGACTTC +
Preference number: 2 (lower is better)
Translates to: RSLGSLWISTGKKLNPPGWGLGL*FQRPDF
Trigger: GAAGTCAGGTCTCTGGAACCACAGTCCCAGACCCCA...GCCTGGGGGATTGAGCTTCTTTCCAGTGCTTATCCAGAGAGACCCCAGGGACCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
3UTR-3UTR CCA 90 bp TGGGATGACATCTGGCTCAGGATCAGATCAGCCCGGTCCACTGTCCATACTGGAAGCTGCAGTACCAGCTaGGACCAAGGCCTGTCTGTG +
Preference number: 2 (lower is better)
Translates to: WDDIWLRIRSARSTVHTGSCSTS*DQGLSV
Trigger: CACAGACAGGCCTTGGTCCCAGCTGGTACTGCAGCT...TCCAGTATGGACAGTGGACCGGGCTGATCTGATCCTGAGCCAGATGTCATCCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
3UTR-3UTR TCA 90 bp CATTCCTGGCAGCCTGGAAGTCCTTGTTGCTGCTCAACCCTGTTGGCTTTCTTTCCTGCCTGCAGGCACTaGCAGACACACATGGTCCAC +
Preference number: 2 (lower is better)
Translates to: HSWQPGSPCCCSTLLAFFPACRH*QTHMVH
Trigger: GTGGACCATGTGTGTCTGTCAGTGCCTGCAGGCAGG...AAAGAAAGCCAACAGGGTTGAGCAGCAACAAGGACTTCCAGGCTGCCAGGAATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
3UTR-3UTR CCA 90 bp GAAGGTATTTGCAACTTTGCTGCTCATTCCTGGCAGCCTGGAAGTCCTTGTTGCTGCCCCTTCCACGCCTaGTGCTCTGGAGGCAGCAGA +
Preference number: 2 (lower is better)
Translates to: EGICNFAAHSWQPGSPCCCPFHA*CSGGSR
Trigger: TCTGCTGCCTCCAGAGCACCAGGCGTGGAAGGGGCA...GCAACAAGGACTTCCAGGCTGCCAGGAATGAGCAGCAAAGTTGCAAATACCTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
3UTR-3UTR CCA 90 bp GCTTCAAGTCTGGCCACAGCTCTCTCTTGTGCTGCCGATGCTCTGTGGGATGACAAAGAAAGGAGAAACTaGGAGGGAGAGGACGCACGG +
Preference number: 2 (lower is better)
Translates to: ASSLATALSCAADALWDDKERRN*EGEDAR
Trigger: CCGTGCGTCCTCTCCCTCCCAGTTTCTCCTTTCTTT...GTCATCCCACAGAGCATCGGCAGCACAAGAGAGAGCTGTGGCCAGACTTGAAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
3UTR-3UTR CCA 90 bp GCTCTGTGGGATGACATCTGGCTCAGGATCAGATCAGCCCGGTCCACTGTCCATTCATTCCTGGCAGCCTaGAAGTCCTTGTTGCTGCTC +
Preference number: 2 (lower is better)
Translates to: ALWDDIWLRIRSARSTVHSFLAA*KSLLLL
Trigger: GAGCAGCAACAAGGACTTCCAGGCTGCCAGGAATGA...ATGGACAGTGGACCGGGCTGATCTGATCCTGAGCCAGATGTCATCCCACAGAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
3UTR-3UTR TCA 90 bp CTCTGTGGGATGACATCTGGCTCAGGATCAGATCAGCCCGGTCCACTGTCCATAGTGGTTCCAGAGACCTaGCTTCAGGAGTGGAAACCT +
Preference number: 2 (lower is better)
Translates to: LCGMTSGSGSDQPGPLSIVVPET*LQEWKP
Trigger: AGGTTTCCACTCCTGAAGTCAGGTCTCTGGAACCAC...TATGGACAGTGGACCGGGCTGATCTGATCCTGAGCCAGATGTCATCCCACAGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
3UTR-3UTR GCA 90 bp TGGGATGACATCTGGCTCAGGATCAGATCAGCCCGGTCCACTGTCCATACTGGAGGATGCCTGTGCAGTTaGATTGGGAGCCAATGGTCT +
Preference number: 2 (lower is better)
Translates to: WDDIWLRIRSARSTVHTGGCLCS*IGSQWS
Trigger: AGACCATTGGCTCCCAATGCAACTGCACAGGCATCC...TCCAGTATGGACAGTGGACCGGGCTGATCTGATCCTGAGCCAGATGTCATCCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
3UTR-3UTR TCA 90 bp GCTTCAAGTCTGGCCACAGCTCTCTCTTGTGCTGCCGATGCTCTGTGGGATGACTACTGGAAGGAACATTaGCATCCAAGGATGCCTGTG +
Preference number: 2 (lower is better)
Translates to: ASSLATALSCAADALWDDYWKEH*HPRMPV
Trigger: CACAGGCATCCTTGGATGTCAATGTTCCTTCCAGTA...GTCATCCCACAGAGCATCGGCAGCACAAGAGAGAGCTGTGGCCAGACTTGAAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
3UTR-3UTR GCA 90 bp CATTCCTGGCAGCCTGGAAGTCCTTGTTGCTGCTCAACCCTGTTGGCTTTCTTTTCAGGAGTGGAAACCTaGATGCTGACTCCTGCCTGC +
Preference number: 2 (lower is better)
Translates to: HSWQPGSPCCCSTLLAFFSGVET*MLTPAC
Trigger: GCAGGCAGGAGTCAGCATGCAGGTTTCCACTCCTGA...AAAGAAAGCCAACAGGGTTGAGCAGCAACAAGGACTTCCAGGCTGCCAGGAATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
3UTR-3UTR GCA 90 bp GTGTATCCTCAAGAGATGACACTACTCAGCCCTGTAGTGGTCCCTGACAATCCTCAAGGCCTGTCTGTGTaGACAGCAGGATGGGGTCTG +
Preference number: 2 (lower is better)
Translates to: VYPQEMTLLSPVVVPDNPQGLSV*TAGWGL
Trigger: CAGACCCCATCCTGCTGTGCACACAGACAGGCCTTG...AGGATTGTCAGGGACCACTACAGGGCTGAGTAGTGTCATCTCTTGAGGATACAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
3UTR-3UTR GCA 90 bp CTCTGTGGGATGACATCTGGCTCAGGATCAGATCAGCCCGGTCCACTGTCCATAATCCAAGGATGCCTGTaGAGTTGCATTGGGAGCCAA +
Preference number: 2 (lower is better)
Translates to: LCGMTSGSGSDQPGPLSIIQGCL*SCIGSQ
Trigger: TTGGCTCCCAATGCAACTGCACAGGCATCCTTGGAT...TATGGACAGTGGACCGGGCTGATCTGATCCTGAGCCAGATGTCATCCCACAGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
3UTR-3UTR CCA 90 bp CATTCCTGGCAGCCTGGAAGTCCTTGTTGCTGCTCAACCCTGTTGGCTTTCTTTTGGGGTCTGGGACTGTaGTTCCAGAGACCTGACTTC +
Preference number: 2 (lower is better)
Translates to: HSWQPGSPCCCSTLLAFFWGLGL*FQRPDF
Trigger: GAAGTCAGGTCTCTGGAACCACAGTCCCAGACCCCA...AAAGAAAGCCAACAGGGTTGAGCAGCAACAAGGACTTCCAGGCTGCCAGGAATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
3UTR-3UTR CCA 90 bp CATACTGGAAGGAACATTGACATCCAAGGATGCCTGTGCAGTTGCATTGGGAGCCAGCAGGATGGGGTCTaGGACTGTGGTTCCAGAGAC +
Preference number: 2 (lower is better)
Translates to: HTGRNIDIQGCLCSCIGSQQDGV*DCGSRD
Trigger: GTCTCTGGAACCACAGTCCCAGACCCCATCCTGCTG...GCTCCCAATGCAACTGCACAGGCATCCTTGGATGTCAATGTTCCTTCCAGTATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
3UTR-3UTR CCA 90 bp GCTCTGTGGGATGACATCTGGCTCAGGATCAGATCAGCCCGGTCCACTGTCCATTCTCTGGATAAGCACTaGAAAGAAGCTCAATCCCCC +
Preference number: 2 (lower is better)
Translates to: ALWDDIWLRIRSARSTVHSLDKH*KEAQSP
Trigger: GGGGGATTGAGCTTCTTTCCAGTGCTTATCCAGAGA...ATGGACAGTGGACCGGGCTGATCTGATCCTGAGCCAGATGTCATCCCACAGAGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
3UTR-3UTR GCA 90 bp TGTAAACATAGACAGGTCCCTGGGGTCTCTCTGGATAAGCACTGGAAAGAAGCTATCCCCCAGGCTAGCTaGAGTACCAGCTGGGACCAA +
Preference number: 2 (lower is better)
Translates to: CKHRQVPGVSLDKHWKEAIPQAS*STSWDQ
Trigger: TTGGTCCCAGCTGGTACTGCAGCTAGCCTGGGGGAT...AGCTTCTTTCCAGTGCTTATCCAGAGAGACCCCAGGGACCTGTCTATGTTTACA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
3UTR-3UTR GCA 90 bp TGGGATGACATCTGGCTCAGGATCAGATCAGCCCGGTCCACTGTCCATACTGGAATTGACATCCAAGGATaGCTGTGCAGTTGCATTGGG +
Preference number: 2 (lower is better)
Translates to: WDDIWLRIRSARSTVHTGIDIQG*LCSCIG
Trigger: CCCAATGCAACTGCACAGGCATCCTTGGATGTCAAT...TCCAGTATGGACAGTGGACCGGGCTGATCTGATCCTGAGCCAGATGTCATCCCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
3UTR-3UTR CCA 90 bp GGAACAGAGGATGTGCTTCAAGTCTGGCCACAGCTCTCTCTTGTGCTGCCGATGTCTCTGGATAAGCACTaGAAAGAAGCTCAATCCCCC +
Preference number: 2 (lower is better)
Translates to: GTEDVLQVWPQLSLVLPMSLDKH*KEAQSP
Trigger: GGGGGATTGAGCTTCTTTCCAGTGCTTATCCAGAGA...CATCGGCAGCACAAGAGAGAGCTGTGGCCAGACTTGAAGCACATCCTCTGTTCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
3UTR-3UTR GCA 90 bp TATCTTCCCTTCATGAAGGTATTTGCAACTTTGCTGCTCATTCCTGGCAGCCTGCAAGGCCTGTCTGTGTaGACAGCAGGATGGGGTCTG +
Preference number: 2 (lower is better)
Translates to: YLPFMKVFATLLLIPGSLQGLSV*TAGWGL
Trigger: CAGACCCCATCCTGCTGTGCACACAGACAGGCCTTG...CAGGCTGCCAGGAATGAGCAGCAAAGTTGCAAATACCTTCATGAAGGGAAGATA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
3UTR-3UTR GCA 90 bp TCATATGTAAACATAGACAGGTCCCTGGGGTCTCTCTGGATAAGCACTGGAAAGATCCCCCAGGCTAGCTaGAGTACCAGCTGGGACCAA +
Preference number: 2 (lower is better)
Translates to: SYVNIDRSLGSLWISTGKIPQAS*STSWDQ
Trigger: TTGGTCCCAGCTGGTACTGCAGCTAGCCTGGGGGAT...CTTTCCAGTGCTTATCCAGAGAGACCCCAGGGACCTGTCTATGTTTACATATGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
3UTR-3UTR CCA 90 bp GTGTATCCTCAAGAGATGACACTACTCAGCCCTGTAGTGGTCCCTGACAATCCTAAAGAAAGGAGAAACTaGGAGGGAGAGGACGCACGG +
Preference number: 2 (lower is better)
Translates to: VYPQEMTLLSPVVVPDNPKERRN*EGEDAR
Trigger: CCGTGCGTCCTCTCCCTCCCAGTTTCTCCTTTCTTT...AGGATTGTCAGGGACCACTACAGGGCTGAGTAGTGTCATCTCTTGAGGATACAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
3UTR-3UTR CCA 90 bp GTGTATCCTCAAGAGATGACACTACTCAGCCCTGTAGTGGTCCCTGACAATCCTTCATTCCTGGCAGCCTaGAAGTCCTTGTTGCTGCTC +
Preference number: 2 (lower is better)
Translates to: VYPQEMTLLSPVVVPDNPSFLAA*KSLLLL
Trigger: GAGCAGCAACAAGGACTTCCAGGCTGCCAGGAATGA...AGGATTGTCAGGGACCACTACAGGGCTGAGTAGTGTCATCTCTTGAGGATACAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
3UTR-3UTR CCA 90 bp GTGTATCCTCAAGAGATGACACTACTCAGCCCTGTAGTGGTCCCTGACAATCCTCTGTGGGATGACATCTaGCTCAGGATCAGATCAGCC +
Preference number: 2 (lower is better)
Translates to: VYPQEMTLLSPVVVPDNPLWDDI*LRIRSA
Trigger: GGCTGATCTGATCCTGAGCCAGATGTCATCCCACAG...AGGATTGTCAGGGACCACTACAGGGCTGAGTAGTGTCATCTCTTGAGGATACAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
3UTR-3UTR GCA 90 bp GCTTCAAGTCTGGCCACAGCTCTCTCTTGTGCTGCCGATGCTCTGTGGGATGACCTTCATGAAGGTATTTaGAACTTTGCTGCTCATTCC +
Preference number: 2 (lower is better)
Translates to: ASSLATALSCAADALWDDLHEGI*NFAAHS
Trigger: GGAATGAGCAGCAAAGTTGCAAATACCTTCATGAAG...GTCATCCCACAGAGCATCGGCAGCACAAGAGAGAGCTGTGGCCAGACTTGAAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
3UTR-3UTR CCA 90 bp CATTCCTGGCAGCCTGGAAGTCCTTGTTGCTGCTCAACCCTGTTGGCTTTCTTTTCTCTGGATAAGCACTaGAAAGAAGCTCAATCCCCC +
Preference number: 2 (lower is better)
Translates to: HSWQPGSPCCCSTLLAFFSLDKH*KEAQSP
Trigger: GGGGGATTGAGCTTCTTTCCAGTGCTTATCCAGAGA...AAAGAAAGCCAACAGGGTTGAGCAGCAACAAGGACTTCCAGGCTGCCAGGAATG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
3UTR-3UTR TCA 90 bp AGGTCCCTGGGGTCTCTCTGGATAAGCACTGGAAAGAAGCTCAATCCCCCAGGCTTGTGCATATCACCTTaGTTGTTTTTCATGTCCATC +
Preference number: 2 (lower is better)
Translates to: RSLGSLWISTGKKLNPPGLCISP*LFFMSI
Trigger: GATGGACATGAAAAACAATCAAGGTGATATGCACAA...GCCTGGGGGATTGAGCTTCTTTCCAGTGCTTATCCAGAGAGACCCCAGGGACCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
3UTR-3UTR GCA 90 bp AGAATCACAATATGTTTAAGTGTATCCTCAAGAGATGACACTACTCAGCCCTGTCCCTTCCACGCCTGGTaGTCTGGAGGCAGCAGAGCT +
Preference number: 2 (lower is better)
Translates to: RITICLSVSSRDDTTQPCPFHAW*SGGSRA
Trigger: AGCTCTGCTGCCTCCAGAGCACCAGGCGTGGAAGGG...ACAGGGCTGAGTAGTGTCATCTCTTGAGGATACACTTAAACATATTGTGATTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
3UTR-3UTR CCA 90 bp TTCCTGGCAGCCTGGAAGTCCTTGTTGCTGCTCAACCCTGTTGGCTTTCTTTCCACTGACAGACACACATaGTCCACTTTGTGCATATCA +
Preference number: 2 (lower is better)
Translates to: FLAAWKSLLLLNPVGFLSTDRHT*STLCIS
Trigger: TGATATGCACAAAGTGGACCATGTGTGTCTGTCAGT...GGAAAGAAAGCCAACAGGGTTGAGCAGCAACAAGGACTTCCAGGCTGCCAGGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
3UTR CAA 90 bp CCTAGTCATAGCCAGTATCTTCCCTTCATGAAGGTATTTGCAACTTaGCTGCTCATTCCTGGCAGCCTGGAAGTCCTTGTTGCTGCTCAA +
Preference number: 2 (lower is better)
Translates to: PSHSQYLPFMKVFAT*LLIPGSLEVLVAAQ
Trigger: TTGAGCAGCAACAAGGACTTCCAGGCTGCCAGGAATGAGCAGCAAAGTTGCAAATACCTTCATGAAGGGAAGATACTGGCTATGACTAGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
3UTR-3UTR TCA 90 bp TGGGATGACATCTGGCTCAGGATCAGATCAGCCCGGTCCACTGTCCATACTGGATTGTGCATATCACCTTaGTTGTTTTTCATGTCCATC +
Preference number: 2 (lower is better)
Translates to: WDDIWLRIRSARSTVHTGLCISP*LFFMSI
Trigger: GATGGACATGAAAAACAATCAAGGTGATATGCACAA...TCCAGTATGGACAGTGGACCGGGCTGATCTGATCCTGAGCCAGATGTCATCCCA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
3UTR-3UTR TCA 90 bp AGAATCACAATATGTTTAAGTGTATCCTCAAGAGATGACACTACTCAGCCCTGTCCTGCCTGCAGGCACTaGCAGACACACATGGTCCAC +
Preference number: 2 (lower is better)
Translates to: RITICLSVSSRDDTTQPCPACRH*QTHMVH
Trigger: GTGGACCATGTGTGTCTGTCAGTGCCTGCAGGCAGG...ACAGGGCTGAGTAGTGTCATCTCTTGAGGATACACTTAAACATATTGTGATTCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
3UTR-3UTR GCA 90 bp AGAATCACAATATGTTTAAGTGTATCCTCAAGAGATGACACTACTCAGCCCTGTCAAGGCCTGTCTGTGTaGACAGCAGGATGGGGTCTG +
Preference number: 2 (lower is better)
Translates to: RITICLSVSSRDDTTQPCQGLSV*TAGWGL
Trigger: CAGACCCCATCCTGCTGTGCACACAGACAGGCCTTG...ACAGGGCTGAGTAGTGTCATCTCTTGAGGATACACTTAAACATATTGTGATTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
3UTR-3UTR GCA 90 bp AGAATCACAATATGTTTAAGTGTATCCTCAAGAGATGACACTACTCAGCCCTGTATCCCCCAGGCTAGCTaGAGTACCAGCTGGGACCAA +
Preference number: 2 (lower is better)
Translates to: RITICLSVSSRDDTTQPCIPQAS*STSWDQ
Trigger: TTGGTCCCAGCTGGTACTGCAGCTAGCCTGGGGGAT...ACAGGGCTGAGTAGTGTCATCTCTTGAGGATACACTTAAACATATTGTGATTCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
3UTR-3UTR CCA 90 bp GTGTATCCTCAAGAGATGACACTACTCAGCCCTGTAGTGGTCCCTGACAATCCTACTGACAGACACACATaGTCCACTTTGTGCATATCA +
Preference number: 2 (lower is better)
Translates to: VYPQEMTLLSPVVVPDNPTDRHT*STLCIS
Trigger: TGATATGCACAAAGTGGACCATGTGTGTCTGTCAGT...AGGATTGTCAGGGACCACTACAGGGCTGAGTAGTGTCATCTCTTGAGGATACAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
3UTR-3UTR TCA 90 bp CATTCCTGGCAGCCTGGAAGTCCTTGTTGCTGCTCAACCCTGTTGGCTTTCTTTTTGTGCATATCACCTTaGTTGTTTTTCATGTCCATC +
Preference number: 2 (lower is better)
Translates to: HSWQPGSPCCCSTLLAFFLCISP*LFFMSI
Trigger: GATGGACATGAAAAACAATCAAGGTGATATGCACAA...AAAGAAAGCCAACAGGGTTGAGCAGCAACAAGGACTTCCAGGCTGCCAGGAATG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
3UTR-3UTR GCA 90 bp GTGTATCCTCAAGAGATGACACTACTCAGCCCTGTAGTGGTCCCTGACAATCCTCTTCATGAAGGTATTTaGAACTTTGCTGCTCATTCC +
Preference number: 2 (lower is better)
Translates to: VYPQEMTLLSPVVVPDNPLHEGI*NFAAHS
Trigger: GGAATGAGCAGCAAAGTTGCAAATACCTTCATGAAG...AGGATTGTCAGGGACCACTACAGGGCTGAGTAGTGTCATCTCTTGAGGATACAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
3UTR-3UTR GCA 90 bp AGAATCACAATATGTTTAAGTGTATCCTCAAGAGATGACACTACTCAGCCCTGTGGATGCCTGTGCAGTTaGATTGGGAGCCAATGGTCT +
Preference number: 2 (lower is better)
Translates to: RITICLSVSSRDDTTQPCGCLCS*IGSQWS
Trigger: AGACCATTGGCTCCCAATGCAACTGCACAGGCATCC...ACAGGGCTGAGTAGTGTCATCTCTTGAGGATACACTTAAACATATTGTGATTCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
3UTR GCA 72 bp AACTGGGAGGGAGAGGACGCACGGCTAAGCACGATTTaGCCCTTCCACGCCTGGTGCTCTGGAGGCAGCAGA +
Preference number: 3 (lower is better)
Translates to: NWEGEDARLSTI*PFHAWCSGGSR
Trigger: TCTGCTGCCTCCAGAGCACCAGGCGTGGAAGGGGCAAATCGTGCTTAGCCGTGCGTCCTCTCCCTCCCAGTT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
3UTR CCA 72 bp AGCTGGGACCAAGGCCTGTCTGTGTGCACAGCAGGATaGGGTCTGGGACTGTGGTTCCAGAGACCTGACTTC +
Preference number: 3 (lower is better)
Translates to: SWDQGLSVCTAG*GLGLWFQRPDF
Trigger: GAAGTCAGGTCTCTGGAACCACAGTCCCAGACCCCATCCTGCTGTGCACACAGACAGGCCTTGGTCCCAGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
3UTR CCA 72 bp AGAAGCTCAATCCCCCAGGCTAGCTGCAGTACCAGCTaGGACCAAGGCCTGTCTGTGTGCACAGCAGGATGG +
Preference number: 3 (lower is better)
Translates to: RSSIPQASCSTS*DQGLSVCTAGW
Trigger: CCATCCTGCTGTGCACACAGACAGGCCTTGGTCCCAGCTGGTACTGCAGCTAGCCTGGGGGATTGAGCTTCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
3UTR CCA 72 bp CTGGCCACAGCTCTCTCTTGTGCTGCCGATGCTCTGTaGGATGACATCTGGCTCAGGATCAGATCAGCCCGG +
Preference number: 3 (lower is better)
Translates to: LATALSCAADAL*DDIWLRIRSAR
Trigger: CCGGGCTGATCTGATCCTGAGCCAGATGTCATCCCACAGAGCATCGGCAGCACAAGAGAGAGCTGTGGCCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
3UTR TCA 72 bp CACAGCTCTCTCTTGTGCTGCCGATGCTCTGTGGGATaGCATCTGGCTCAGGATCAGATCAGCCCGGTCCAC +
Preference number: 3 (lower is better)
Translates to: HSSLLCCRCSVG*HLAQDQISPVH
Trigger: GTGGACCGGGCTGATCTGATCCTGAGCCAGATGTCATCCCACAGAGCATCGGCAGCACAAGAGAGAGCTGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
3UTR CCA 72 bp ACCAAGGCCTGTCTGTGTGCACAGCAGGATGGGGTCTaGGACTGTGGTTCCAGAGACCTGACTTCAGGAGTG +
Preference number: 3 (lower is better)
Translates to: TKACLCAQQDGV*DCGSRDLTSGV
Trigger: CACTCCTGAAGTCAGGTCTCTGGAACCACAGTCCCAGACCCCATCCTGCTGTGCACACAGACAGGCCTTGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
3UTR-3UTR CAA 90 bp GCTTCAAGTCTGGCCACAGCTCTCTCTTGTGCTGCCGATGCTCTGTGGGATGACAGGATGCCTGTGCAGTaGCATTGGGAGCCAATGGTC +
Preference number: 3 (lower is better)
Translates to: ASSLATALSCAADALWDDRMPVQ*HWEPMV
Trigger: GACCATTGGCTCCCAATGCAACTGCACAGGCATCCT...GTCATCCCACAGAGCATCGGCAGCACAAGAGAGAGCTGTGGCCAGACTTGAAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
3UTR CCA 72 bp CTGTCTGTGTGCACAGCAGGATGGGGTCTGGGACTGTaGTTCCAGAGACCTGACTTCAGGAGTGGAAACCTG +
Preference number: 3 (lower is better)
Translates to: LSVCTAGWGLGL*FQRPDFRSGNL
Trigger: CAGGTTTCCACTCCTGAAGTCAGGTCTCTGGAACCACAGTCCCAGACCCCATCCTGCTGTGCACACAGACAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
3UTR CCA 72 bp CTCTCTTGTGCTGCCGATGCTCTGTGGGATGACATCTaGCTCAGGATCAGATCAGCCCGGTCCACTGTCCAT +
Preference number: 3 (lower is better)
Translates to: LSCAADALWDDI*LRIRSARSTVH
Trigger: ATGGACAGTGGACCGGGCTGATCTGATCCTGAGCCAGATGTCATCCCACAGAGCATCGGCAGCACAAGAGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
3UTR GCA 72 bp CCTGACTTCAGGAGTGGAAACCTGCATGCTGACTCCTaGCTGCAGGCACTGACAGACACACATGGTCCACTT +
Preference number: 3 (lower is better)
Translates to: PDFRSGNLHADS*LQALTDTHGPL
Trigger: AAGTGGACCATGTGTGTCTGTCAGTGCCTGCAGGCAGGAGTCAGCATGCAGGTTTCCACTCCTGAAGTCAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
3UTR CCA 72 bp GGCACAGAGCTAGGAACAGAGGATGTGCTTCAAGTCTaGCCACAGCTCTCTCTTGTGCTGCCGATGCTCTGT +
Preference number: 3 (lower is better)
Translates to: GTELGTEDVLQV*PQLSLVLPMLC
Trigger: ACAGAGCATCGGCAGCACAAGAGAGAGCTGTGGCCAGACTTGAAGCACATCCTCTGTTCCTAGCTCTGTGCC
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
3UTR TCA 72 bp GTGGAAACCTGCATGCTGACTCCTGCCTGCAGGCACTaGCAGACACACATGGTCCACTTTGTGCATATCACC +
Preference number: 3 (lower is better)
Translates to: VETCMLTPACRH*QTHMVHFVHIT
Trigger: GGTGATATGCACAAAGTGGACCATGTGTGTCTGTCAGTGCCTGCAGGCAGGAGTCAGCATGCAGGTTTCCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
3UTR TCA 72 bp ATCAGCCCGGTCCACTGTCCATACTGGAAGGAACATTaGCATCCAAGGATGCCTGTGCAGTTGCATTGGGAG +
Preference number: 3 (lower is better)
Translates to: ISPVHCPYWKEH*HPRMPVQLHWE
Trigger: CTCCCAATGCAACTGCACAGGCATCCTTGGATGTCAATGTTCCTTCCAGTATGGACAGTGGACCGGGCTGAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
3UTR-3UTR CAA 90 bp CTCTGTGGGATGACATCTGGCTCAGGATCAGATCAGCCCGGTCCACTGTCCATAAAGGTATTTGCAACTTaGCTGCTCATTCCTGGCAGC +
Preference number: 3 (lower is better)
Translates to: LCGMTSGSGSDQPGPLSIKVFAT*LLIPGS
Trigger: GCTGCCAGGAATGAGCAGCAAAGTTGCAAATACCTT...TATGGACAGTGGACCGGGCTGATCTGATCCTGAGCCAGATGTCATCCCACAGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
3UTR CCA 72 bp ATCCAAGGATGCCTGTGCAGTTGCATTGGGAGCCAATaGTCTCAGCACCTAGTCATAGCCAGTATCTTCCCT +
Preference number: 3 (lower is better)
Translates to: IQGCLCSCIGSQ*SQHLVIASIFP
Trigger: AGGGAAGATACTGGCTATGACTAGGTGCTGAGACCATTGGCTCCCAATGCAACTGCACAGGCATCCTTGGAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
3UTR GCA 72 bp CATACTGGAAGGAACATTGACATCCAAGGATGCCTGTaGAGTTGCATTGGGAGCCAATGGTCTCAGCACCTA +
Preference number: 3 (lower is better)
Translates to: HTGRNIDIQGCL*SCIGSQWSQHL
Trigger: TAGGTGCTGAGACCATTGGCTCCCAATGCAACTGCACAGGCATCCTTGGATGTCAATGTTCCTTCCAGTATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
3UTR GCA 72 bp ACTGTCCATACTGGAAGGAACATTGACATCCAAGGATaGCTGTGCAGTTGCATTGGGAGCCAATGGTCTCAG +
Preference number: 3 (lower is better)
Translates to: TVHTGRNIDIQG*LCSCIGSQWSQ
Trigger: CTGAGACCATTGGCTCCCAATGCAACTGCACAGGCATCCTTGGATGTCAATGTTCCTTCCAGTATGGACAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
3UTR CCA 72 bp AGGTATTTGCAACTTTGCTGCTCATTCCTGGCAGCCTaGAAGTCCTTGTTGCTGCTCAACCCTGTTGGCTTT +
Preference number: 3 (lower is better)
Translates to: RYLQLCCSFLAA*KSLLLLNPVGF
Trigger: AAAGCCAACAGGGTTGAGCAGCAACAAGGACTTCCAGGCTGCCAGGAATGAGCAGCAAAGTTGCAAATACCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
3UTR CCA 72 bp CTTCATGAAGGTATTTGCAACTTTGCTGCTCATTCCTaGCAGCCTGGAAGTCCTTGTTGCTGCTCAACCCTG +
Preference number: 3 (lower is better)
Translates to: LHEGICNFAAHS*QPGSPCCCSTL
Trigger: CAGGGTTGAGCAGCAACAAGGACTTCCAGGCTGCCAGGAATGAGCAGCAAAGTTGCAAATACCTTCATGAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
3UTR TCA 72 bp TCTCAGCACCTAGTCATAGCCAGTATCTTCCCTTCATaGAGGTATTTGCAACTTTGCTGCTCATTCCTGGCA +
Preference number: 3 (lower is better)
Translates to: SQHLVIASIFPS*RYLQLCCSFLA
Trigger: TGCCAGGAATGAGCAGCAAAGTTGCAAATACCTTCATGAAGGGAAGATACTGGCTATGACTAGGTGCTGAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR TCA 90 bp TCCCCCAGGCTAGCTGCAGTACCAGCTGGGACCAAGGCCTGTCTGTGTGCACAGCTTCCTCCATGGTGGTaGCCGAGGCCCCGAAGCTTG +
Preference number: 4 (lower is better)
Translates to: SPRLAAVPAGTKACLCAQLPPWW*PRPRSL
Trigger: CAAGCTTCGGGGCCTCGGTCACCACCATGGAGGAAG...CTGTGCACACAGACAGGCCTTGGTCCCAGCTGGTACTGCAGCTAGCCTGGGGGA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CCA 90 bp TCCCCCAGGCTAGCTGCAGTACCAGCTGGGACCAAGGCCTGTCTGTGTGCACAGCCCCCTTGGCCAAGATaGCGATGCGGTCTCCCAGCA +
Preference number: 4 (lower is better)
Translates to: SPRLAAVPAGTKACLCAQPPWPR*RCGLPA
Trigger: TGCTGGGAGACCGCATCGCCATCTTGGCCAAGGGGG...CTGTGCACACAGACAGGCCTTGGTCCCAGCTGGTACTGCAGCTAGCCTGGGGGA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CCA 90 bp TCCCCCAGGCTAGCTGCAGTACCAGCTGGGACCAAGGCCTGTCTGTGTGCACAGGAAGACCCGCAGCACTaGAGCTCCCCCTTGGCCAAG +
Preference number: 4 (lower is better)
Translates to: SPRLAAVPAGTKACLCAQEDPQH*SSPLAK
Trigger: CTTGGCCAAGGGGGAGCTCCAGTGCTGCGGGTCTTC...CTGTGCACACAGACAGGCCTTGGTCCCAGCTGGTACTGCAGCTAGCCTGGGGGA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR TCA 90 bp TCCCCCAGGCTAGCTGCAGTACCAGCTGGGACCAAGGCCTGTCTGTGTGCACAGGTGGGCAGCAAGCTCTaGGGAAGTGCAGTATCGCCG +
Preference number: 4 (lower is better)
Translates to: SPRLAAVPAGTKACLCAQVGSKL*GSAVSP
Trigger: CGGCGATACTGCACTTCCTCAGAGCTTGCTGCCCAC...CTGTGCACACAGACAGGCCTTGGTCCCAGCTGGTACTGCAGCTAGCCTGGGGGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR TCA 90 bp ATCCCCCAGGCTAGCTGCAGTACCAGCTGGGACCAAGGCCTGTCTGTGTGCACAAGCAGGTCAGCCATGTaGCCATCCCTCGTGAAGGCG +
Preference number: 4 (lower is better)
Translates to: IPQASCSTSWDQGLSVCTSRSAM*PSLVKA
Trigger: CGCCTTCACGAGGGATGGTCACATGGCTGACCTGCT...TGTGCACACAGACAGGCCTTGGTCCCAGCTGGTACTGCAGCTAGCCTGGGGGAT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR TCA 90 bp ATCCCCCAGGCTAGCTGCAGTACCAGCTGGGACCAAGGCCTGTCTGTGTGCACAAGGCATCCCCTGAGGTaGTGGTCTCCTCCCCAGTCA +
Preference number: 4 (lower is better)
Translates to: IPQASCSTSWDQGLSVCTRHPLR*WSPPQS
Trigger: TGACTGGGGAGGAGACCATCACCTCAGGGGATGCCT...TGTGCACACAGACAGGCCTTGGTCCCAGCTGGTACTGCAGCTAGCCTGGGGGAT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CCA 90 bp TCCCCCAGGCTAGCTGCAGTACCAGCTGGGACCAAGGCCTGTCTGTGTGCACAGCAAACTGAACGTGCTTaGCCTGGACGGCCCTCTCAC +
Preference number: 4 (lower is better)
Translates to: SPRLAAVPAGTKACLCAQQTERA*PGRPSH
Trigger: GTGAGAGGGCCGTCCAGGCCAAGCACGTTCAGTTTG...CTGTGCACACAGACAGGCCTTGGTCCCAGCTGGTACTGCAGCTAGCCTGGGGGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR TCA 90 bp ATCCCCCAGGCTAGCTGCAGTACCAGCTGGGACCAAGGCCTGTCTGTGTGCACATTCTCAGACAGCTGCTaGGCCAGCCTGGATGTGCCT +
Preference number: 4 (lower is better)
Translates to: IPQASCSTSWDQGLSVCTFSDSC*ASLDVP
Trigger: AGGCACATCCAGGCTGGCTCAGCAGCTGTCTGAGAA...TGTGCACACAGACAGGCCTTGGTCCCAGCTGGTACTGCAGCTAGCCTGGGGGAT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
CDS-3UTR TCA 90 bp GCTTCAAGTCTGGCCACAGCTCTCTCTTGTGCTGCCGATGCTCTGTGGGATGACCCCAGCCGTAGAGCATaGGCAGCAGCAGCAGGTCAG +
Preference number: 4 (lower is better)
Translates to: ASSLATALSCAADALWDDPSRRA*AAAAGQ
Trigger: CTGACCTGCTGCTGCTGCTCATGCTCTACGGCTGGG...GTCATCCCACAGAGCATCGGCAGCACAAGAGAGAGCTGTGGCCAGACTTGAAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR TCA 90 bp AGGTCCCTGGGGTCTCTCTGGATAAGCACTGGAAAGAAGCTCAATCCCCCAGGCCCCAGCCGTAGAGCATaGGCAGCAGCAGCAGGTCAG +
Preference number: 4 (lower is better)
Translates to: RSLGSLWISTGKKLNPPGPSRRA*AAAAGQ
Trigger: CTGACCTGCTGCTGCTGCTCATGCTCTACGGCTGGG...GCCTGGGGGATTGAGCTTCTTTCCAGTGCTTATCCAGAGAGACCCCAGGGACCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR TCA 90 bp ATCCCCCAGGCTAGCTGCAGTACCAGCTGGGACCAAGGCCTGTCTGTGTGCACAAACAAAGGCATCCCCTaGGGTGATGGTCTCCTCCCC +
Preference number: 4 (lower is better)
Translates to: IPQASCSTSWDQGLSVCTNKGIP*GDGLLP
Trigger: GGGGAGGAGACCATCACCTCAGGGGATGCCTTTGTT...TGTGCACACAGACAGGCCTTGGTCCCAGCTGGTACTGCAGCTAGCCTGGGGGAT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR GCA 90 bp GGCCTGTCTGTGTGCACAGCAGGATGGGGTCTGGGACTGTGGTTCCAGAGACCTTGGTCAGCAGGACGGTaGGGTCACTCTTCTGCTGCT +
Preference number: 4 (lower is better)
Translates to: GLSVCTAGWGLGLWFQRPWSAGR*GHSSAA
Trigger: AGCAGCAGAAGAGTGACCGCACCGTCCTGCTGACCA...AGGTCTCTGGAACCACAGTCCCAGACCCCATCCTGCTGTGCACACAGACAGGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR GCA 90 bp GGCCTGTCTGTGTGCACAGCAGGATGGGGTCTGGGACTGTGGTTCCAGAGACCTCAAAGCCCAGTCGCTTaGCCGCCTCTCATGCTGGTA +
Preference number: 4 (lower is better)
Translates to: GLSVCTAGWGLGLWFQRPQSPVA*PPLMLV
Trigger: TACCAGCATGAGAGGCGGGCAAGCGACTGGGCTTTG...AGGTCTCTGGAACCACAGTCCCAGACCCCATCCTGCTGTGCACACAGACAGGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
CDS-3UTR GCA 90 bp GGTCTGGGACTGTGGTTCCAGAGACCTGACTTCAGGAGTGGAAACCTGCATGCTTGGTCCTTGGCGACCTaGAGGGTGTTCCGGGGCTGG +
Preference number: 4 (lower is better)
Translates to: GLGLWFQRPDFRSGNLHAWSLAT*RVFRGW
Trigger: CCAGCCCCGGAACACCCTGCAGGTCGCCAAGGACCA...AGCATGCAGGTTTCCACTCCTGAAGTCAGGTCTCTGGAACCACAGTCCCAGACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
CDS-3UTR CCA 90 bp TCCCCCAGGCTAGCTGCAGTACCAGCTGGGACCAAGGCCTGTCTGTGTGCACAGTCACTCTTCTGCTGCTaGAGAAGGTCCCAGATGGCC +
Preference number: 4 (lower is better)
Translates to: SPRLAAVPAGTKACLCAQSLFCC*RRSQMA
Trigger: GGCCATCTGGGACCTTCTCCAGCAGCAGAAGAGTGA...CTGTGCACACAGACAGGCCTTGGTCCCAGCTGGTACTGCAGCTAGCCTGGGGGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CCA 90 bp GCTCTGTGGGATGACATCTGGCTCAGGATCAGATCAGCCCGGTCCACTGTCCATCCCCCTTGGCCAAGATaGCGATGCGGTCTCCCAGCA +
Preference number: 4 (lower is better)
Translates to: ALWDDIWLRIRSARSTVHPPWPR*RCGLPA
Trigger: TGCTGGGAGACCGCATCGCCATCTTGGCCAAGGGGG...ATGGACAGTGGACCGGGCTGATCTGATCCTGAGCCAGATGTCATCCCACAGAGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CCA 90 bp AGGTCCCTGGGGTCTCTCTGGATAAGCACTGGAAAGAAGCTCAATCCCCCAGGCCCCCCTTGGCCAAGATaGCGATGCGGTCTCCCAGCA +
Preference number: 4 (lower is better)
Translates to: RSLGSLWISTGKKLNPPGPPWPR*RCGLPA
Trigger: TGCTGGGAGACCGCATCGCCATCTTGGCCAAGGGGG...GCCTGGGGGATTGAGCTTCTTTCCAGTGCTTATCCAGAGAGACCCCAGGGACCT
60% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CCA 90 bp GGGGTCTGGGACTGTGGTTCCAGAGACCTGACTTCAGGAGTGGAAACCTGCATGGAAGACCCGCAGCACTaGAGCTCCCCCTTGGCCAAG +
Preference number: 4 (lower is better)
Translates to: GVWDCGSRDLTSGVETCMEDPQH*SSPLAK
Trigger: CTTGGCCAAGGGGGAGCTCCAGTGCTGCGGGTCTTC...CATGCAGGTTTCCACTCCTGAAGTCAGGTCTCTGGAACCACAGTCCCAGACCCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CCA 90 bp ATCCCCCAGGCTAGCTGCAGTACCAGCTGGGACCAAGGCCTGTCTGTGTGCACAGCCATCCCCAGGCAGTaGTTTGGCAGCACCAAGAAC +
Preference number: 4 (lower is better)
Translates to: IPQASCSTSWDQGLSVCTAIPRQ*FGSTKN
Trigger: GTTCTTGGTGCTGCCAAACCACTGCCTGGGGATGGC...TGTGCACACAGACAGGCCTTGGTCCCAGCTGGTACTGCAGCTAGCCTGGGGGAT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR TCA 90 bp GGGGTCTGGGACTGTGGTTCCAGAGACCTGACTTCAGGAGTGGAAACCTGCATGAGCAGGTCAGCCATGTaGCCATCCCTCGTGAAGGCG +
Preference number: 4 (lower is better)
Translates to: GVWDCGSRDLTSGVETCMSRSAM*PSLVKA
Trigger: CGCCTTCACGAGGGATGGTCACATGGCTGACCTGCT...CATGCAGGTTTCCACTCCTGAAGTCAGGTCTCTGGAACCACAGTCCCAGACCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR TCA 90 bp AGGTCCCTGGGGTCTCTCTGGATAAGCACTGGAAAGAAGCTCAATCCCCCAGGCGTGGGCAGCAAGCTCTaGGGAAGTGCAGTATCGCCG +
Preference number: 4 (lower is better)
Translates to: RSLGSLWISTGKKLNPPGVGSKL*GSAVSP
Trigger: CGGCGATACTGCACTTCCTCAGAGCTTGCTGCCCAC...GCCTGGGGGATTGAGCTTCTTTCCAGTGCTTATCCAGAGAGACCCCAGGGACCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR TCA 90 bp AGGTCCCTGGGGTCTCTCTGGATAAGCACTGGAAAGAAGCTCAATCCCCCAGGCGAGGTAGATGCCCCCTaGGGCAGCCATGGAAGTCAC +
Preference number: 4 (lower is better)
Translates to: RSLGSLWISTGKKLNPPGEVDAP*GSHGSH
Trigger: GTGACTTCCATGGCTGCCTCAGGGGGCATCTACCTC...GCCTGGGGGATTGAGCTTCTTTCCAGTGCTTATCCAGAGAGACCCCAGGGACCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR GCA 90 bp GGGGTCTGGGACTGTGGTTCCAGAGACCTGACTTCAGGAGTGGAAACCTGCATGCCGGTTCTGCAGTTCTaGCAGAGTCCACCTCCTCCG +
Preference number: 4 (lower is better)
Translates to: GVWDCGSRDLTSGVETCMPVLQF*QSPPPP
Trigger: CGGAGGAGGTGGACTCTGGCAGAACTGCAGAACCGG...CATGCAGGTTTCCACTCCTGAAGTCAGGTCTCTGGAACCACAGTCCCAGACCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR GCA 90 bp TCCCCCAGGCTAGCTGCAGTACCAGCTGGGACCAAGGCCTGTCTGTGTGCACAGAAGCTCAGAAAGACCTaGTCCAGGGAGATCTGGCTC +
Preference number: 4 (lower is better)
Translates to: SPRLAAVPAGTKACLCAQKLRKT*SREIWL
Trigger: GAGCCAGATCTCCCTGGAGCAGGTCTTTCTGAGCTT...CTGTGCACACAGACAGGCCTTGGTCCCAGCTGGTACTGCAGCTAGCCTGGGGGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CCA 90 bp GCTCTGTGGGATGACATCTGGCTCAGGATCAGATCAGCCCGGTCCACTGTCCATGGGGCAGCTCCTGGATaGACTGGTCCGGGTAAACAG +
Preference number: 4 (lower is better)
Translates to: ALWDDIWLRIRSARSTVHGAAPG*TGPGKQ
Trigger: CTGTTTACCCGGACCAGTCCATCCAGGAGCTGCCCC...ATGGACAGTGGACCGGGCTGATCTGATCCTGAGCCAGATGTCATCCCACAGAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CCA 90 bp ATCCCCCAGGCTAGCTGCAGTACCAGCTGGGACCAAGGCCTGTCTGTGTGCACACCTGAGAGCTTTCTCTaGGTCGCTGCCTTCCTCTTC +
Preference number: 4 (lower is better)
Translates to: IPQASCSTSWDQGLSVCTPESFL*VAAFLF
Trigger: GAAGAGGAAGGCAGCGACCCAGAGAAAGCTCTCAGG...TGTGCACACAGACAGGCCTTGGTCCCAGCTGGTACTGCAGCTAGCCTGGGGGAT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CCA 90 bp TGGGATGACATCTGGCTCAGGATCAGATCAGCCCGGTCCACTGTCCATACTGGAGAAGACCCGCAGCACTaGAGCTCCCCCTTGGCCAAG +
Preference number: 4 (lower is better)
Translates to: WDDIWLRIRSARSTVHTGEDPQH*SSPLAK
Trigger: CTTGGCCAAGGGGGAGCTCCAGTGCTGCGGGTCTTC...TCCAGTATGGACAGTGGACCGGGCTGATCTGATCCTGAGCCAGATGTCATCCCA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CCA 90 bp GGCCTGTCTGTGTGCACAGCAGGATGGGGTCTGGGACTGTGGTTCCAGAGACCTTCTCCAGCATGGCATTaGGGACATGGTGGTGCACCA +
Preference number: 4 (lower is better)
Translates to: GLSVCTAGWGLGLWFQRPSPAWH*GHGGAP
Trigger: TGGTGCACCACCATGTCCCCAATGCCATGCTGGAGA...AGGTCTCTGGAACCACAGTCCCAGACCCCATCCTGCTGTGCACACAGACAGGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CCA 90 bp ATCCCCCAGGCTAGCTGCAGTACCAGCTGGGACCAAGGCCTGTCTGTGTGCACATCTCCAGCATGGCATTaGGGACATGGTGGTGCACCA +
Preference number: 4 (lower is better)
Translates to: IPQASCSTSWDQGLSVCTSPAWH*GHGGAP
Trigger: TGGTGCACCACCATGTCCCCAATGCCATGCTGGAGA...TGTGCACACAGACAGGCCTTGGTCCCAGCTGGTACTGCAGCTAGCCTGGGGGAT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CCA 90 bp GGCCTGTCTGTGTGCACAGCAGGATGGGGTCTGGGACTGTGGTTCCAGAGACCTGCAGTGGCTGGGGAGTaGTATGCCTGGTTGTTGAAC +
Preference number: 4 (lower is better)
Translates to: GLSVCTAGWGLGLWFQRPAVAGE*YAWLLN
Trigger: GTTCAACAACCAGGCATACCACTCCCCAGCCACTGC...AGGTCTCTGGAACCACAGTCCCAGACCCCATCCTGCTGTGCACACAGACAGGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
CDS-3UTR CCA 90 bp TGGGATGACATCTGGCTCAGGATCAGATCAGCCCGGTCCACTGTCCATACTGGAGAAGGTTGTCCACGATaGCCAGGGCAGTGGCTGGGG +
Preference number: 4 (lower is better)
Translates to: WDDIWLRIRSARSTVHTGEGCPR*PGQWLG
Trigger: CCCCAGCCACTGCCCTGGCCATCGTGGACAACCTTC...TCCAGTATGGACAGTGGACCGGGCTGATCTGATCCTGAGCCAGATGTCATCCCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
CDS-3UTR CCA 90 bp TCCCCCAGGCTAGCTGCAGTACCAGCTGGGACCAAGGCCTGTCTGTGTGCACAGGCCTGGTATAAGCTGTaGACGCAGCCGAGAAGAAGA +
Preference number: 4 (lower is better)
Translates to: SPRLAAVPAGTKACLCAQAWYKL*TQPRRR
Trigger: TCTTCTTCTCGGCTGCGTCCACAGCTTATACCAGGC...CTGTGCACACAGACAGGCCTTGGTCCCAGCTGGTACTGCAGCTAGCCTGGGGGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR TCA 90 bp TCCCCCAGGCTAGCTGCAGTACCAGCTGGGACCAAGGCCTGTCTGTGTGCACAGCTTCGAATTTTCCTATaGGCTGGGCTCCCATTGCCA +
Preference number: 4 (lower is better)
Translates to: SPRLAAVPAGTKACLCAQLRIFL*AGLPLP
Trigger: TGGCAATGGGAGCCCAGCTCATAGGAAAATTCGAAG...CTGTGCACACAGACAGGCCTTGGTCCCAGCTGGTACTGCAGCTAGCCTGGGGGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR TCA 90 bp GGCCTGTCTGTGTGCACAGCAGGATGGGGTCTGGGACTGTGGTTCCAGAGACCTCAAAGTACTCGTTCCTaGGAGCTTTCTCTGGGTCGC +
Preference number: 4 (lower is better)
Translates to: GLSVCTAGWGLGLWFQRPQSTRS*ELSLGR
Trigger: GCGACCCAGAGAAAGCTCTCAGGAACGAGTACTTTG...AGGTCTCTGGAACCACAGTCCCAGACCCCATCCTGCTGTGCACACAGACAGGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR TCA 90 bp TTCCTGGCAGCCTGGAAGTCCTTGTTGCTGCTCAACCCTGTTGGCTTTCTTTCCCTTCCTCCATGGTGGTaGCCGAGGCCCCGAAGCTTG +
Preference number: 4 (lower is better)
Translates to: FLAAWKSLLLLNPVGFLSLPPWW*PRPRSL
Trigger: CAAGCTTCGGGGCCTCGGTCACCACCATGGAGGAAG...GGAAAGAAAGCCAACAGGGTTGAGCAGCAACAAGGACTTCCAGGCTGCCAGGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR TCA 90 bp GCTTCAAGTCTGGCCACAGCTCTCTCTTGTGCTGCCGATGCTCTGTGGGATGACACACCGCTCACAAACTaGACGTGCTTGGCCTGGACG +
Preference number: 4 (lower is better)
Translates to: ASSLATALSCAADALWDDTPLTN*TCLAWT
Trigger: CGTCCAGGCCAAGCACGTTCAGTTTGTGAGCGGTGT...GTCATCCCACAGAGCATCGGCAGCACAAGAGAGAGCTGTGGCCAGACTTGAAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR TCA 90 bp AGGTCCCTGGGGTCTCTCTGGATAAGCACTGGAAAGAAGCTCAATCCCCCAGGCACACCGCTCACAAACTaGACGTGCTTGGCCTGGACG +
Preference number: 4 (lower is better)
Translates to: RSLGSLWISTGKKLNPPGTPLTN*TCLAWT
Trigger: CGTCCAGGCCAAGCACGTTCAGTTTGTGAGCGGTGT...GCCTGGGGGATTGAGCTTCTTTCCAGTGCTTATCCAGAGAGACCCCAGGGACCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR TCA 90 bp GGTCTGGGACTGTGGTTCCAGAGACCTGACTTCAGGAGTGGAAACCTGCATGCTGTGGGCAGCAAGCTCTaGGGAAGTGCAGTATCGCCG +
Preference number: 4 (lower is better)
Translates to: GLGLWFQRPDFRSGNLHAVGSKL*GSAVSP
Trigger: CGGCGATACTGCACTTCCTCAGAGCTTGCTGCCCAC...AGCATGCAGGTTTCCACTCCTGAAGTCAGGTCTCTGGAACCACAGTCCCAGACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR TCA 90 bp CTCTGTGGGATGACATCTGGCTCAGGATCAGATCAGCCCGGTCCACTGTCCATAGAGGTAGATGCCCCCTaGGGCAGCCATGGAAGTCAC +
Preference number: 4 (lower is better)
Translates to: LCGMTSGSGSDQPGPLSIEVDAP*GSHGSH
Trigger: GTGACTTCCATGGCTGCCTCAGGGGGCATCTACCTC...TATGGACAGTGGACCGGGCTGATCTGATCCTGAGCCAGATGTCATCCCACAGAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR TCA 90 bp GGAACAGAGGATGTGCTTCAAGTCTGGCCACAGCTCTCTCTTGTGCTGCCGATGAGGCATCCCCTGAGGTaGTGGTCTCCTCCCCAGTCA +
Preference number: 4 (lower is better)
Translates to: GTEDVLQVWPQLSLVLPMRHPLR*WSPPQS
Trigger: TGACTGGGGAGGAGACCATCACCTCAGGGGATGCCT...CATCGGCAGCACAAGAGAGAGCTGTGGCCAGACTTGAAGCACATCCTCTGTTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR GCA 90 bp ATCCCCCAGGCTAGCTGCAGTACCAGCTGGGACCAAGGCCTGTCTGTGTGCACACTTTCTCTGGGTCGCTaGCTTCCTCTTCCTTCCCTA +
Preference number: 4 (lower is better)
Translates to: IPQASCSTSWDQGLSVCTLSLGR*LPLPSL
Trigger: TAGGGAAGGAAGAGGAAGGCAGCGACCCAGAGAAAG...TGTGCACACAGACAGGCCTTGGTCCCAGCTGGTACTGCAGCTAGCCTGGGGGAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR GCA 90 bp AGGTCCCTGGGGTCTCTCTGGATAAGCACTGGAAAGAAGCTCAATCCCCCAGGCGTGCGGTCACTCTTCTaGTGCTGGAGAAGGTCCCAG +
Preference number: 4 (lower is better)
Translates to: RSLGSLWISTGKKLNPPGVRSLF*CWRRSQ
Trigger: CTGGGACCTTCTCCAGCAGCAGAAGAGTGACCGCAC...GCCTGGGGGATTGAGCTTCTTTCCAGTGCTTATCCAGAGAGACCCCAGGGACCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR GCA 90 bp GGGGTCTGGGACTGTGGTTCCAGAGACCTGACTTCAGGAGTGGAAACCTGCATGTGGTCAGCAGGACGGTaGGGTCACTCTTCTGCTGCT +
Preference number: 4 (lower is better)
Translates to: GVWDCGSRDLTSGVETCMWSAGR*GHSSAA
Trigger: AGCAGCAGAAGAGTGACCGCACCGTCCTGCTGACCA...CATGCAGGTTTCCACTCCTGAAGTCAGGTCTCTGGAACCACAGTCCCAGACCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR GCA 90 bp TCCCCCAGGCTAGCTGCAGTACCAGCTGGGACCAAGGCCTGTCTGTGTGCACAGCCTTCAGGATTGCAGTaGGGTTCTTTTACCAGCGTC +
Preference number: 4 (lower is better)
Translates to: SPRLAAVPAGTKACLCAQPSGLQ*GSFTSV
Trigger: GACGCTGGTAAAAGAACCGCACTGCAATCCTGAAGG...CTGTGCACACAGACAGGCCTTGGTCCCAGCTGGTACTGCAGCTAGCCTGGGGGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR GCA 90 bp GGAACAGAGGATGTGCTTCAAGTCTGGCCACAGCTCTCTCTTGTGCTGCCGATGCCGGTTCTGCAGTTCTaGCAGAGTCCACCTCCTCCG +
Preference number: 4 (lower is better)
Translates to: GTEDVLQVWPQLSLVLPMPVLQF*QSPPPP
Trigger: CGGAGGAGGTGGACTCTGGCAGAACTGCAGAACCGG...CATCGGCAGCACAAGAGAGAGCTGTGGCCAGACTTGAAGCACATCCTCTGTTCC
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CCA 90 bp GGCCTGTCTGTGTGCACAGCAGGATGGGGTCTGGGACTGTGGTTCCAGAGACCTAGGGGGTCCTGGCTGTaGTTGAAGCTGTGCTCAAAT +
Preference number: 4 (lower is better)
Translates to: GLSVCTAGWGLGLWFQRPRGSWL*LKLCSN
Trigger: ATTTGAGCACAGCTTCAACCACAGCCAGGACCCCCT...AGGTCTCTGGAACCACAGTCCCAGACCCCATCCTGCTGTGCACACAGACAGGCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CCA 90 bp TGGGATGACATCTGGCTCAGGATCAGATCAGCCCGGTCCACTGTCCATACTGGAAGGAGGTCCCGCCACTaGATGCCAGTGCCTTTGGCT +
Preference number: 4 (lower is better)
Translates to: WDDIWLRIRSARSTVHTGRRSRH*MPVPLA
Trigger: AGCCAAAGGCACTGGCATCCAGTGGCGGGACCTCCT...TCCAGTATGGACAGTGGACCGGGCTGATCTGATCCTGAGCCAGATGTCATCCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CCA 90 bp TGGGATGACATCTGGCTCAGGATCAGATCAGCCCGGTCCACTGTCCATACTGGATGGGGTACGCCAAACTaGCCTGGGAAGACAGCCTCC +
Preference number: 4 (lower is better)
Translates to: WDDIWLRIRSARSTVHTGWGTPN*PGKTAS
Trigger: GGAGGCTGTCTTCCCAGGCCAGTTTGGCGTACCCCA...TCCAGTATGGACAGTGGACCGGGCTGATCTGATCCTGAGCCAGATGTCATCCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CCA 90 bp ATCCCCCAGGCTAGCTGCAGTACCAGCTGGGACCAAGGCCTGTCTGTGTGCACACCCCACTCAGGAACTTaGACCGTAAGTCACGCTTGT +
Preference number: 4 (lower is better)
Translates to: IPQASCSTSWDQGLSVCTPHSGT*TVSHAC
Trigger: ACAAGCGTGACTTACGGTCCAAGTTCCTGAGTGGGG...TGTGCACACAGACAGGCCTTGGTCCCAGCTGGTACTGCAGCTAGCCTGGGGGAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CCA 90 bp GGGGTCTGGGACTGTGGTTCCAGAGACCTGACTTCAGGAGTGGAAACCTGCATGCCCAGATGGCCCTTCTaGACACTGCATCCATGCCTG +
Preference number: 4 (lower is better)
Translates to: GVWDCGSRDLTSGVETCMPRWPF*TLHPCL
Trigger: CAGGCATGGATGCAGTGTCCAGAAGGGCCATCTGGG...CATGCAGGTTTCCACTCCTGAAGTCAGGTCTCTGGAACCACAGTCCCAGACCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CCA 90 bp GGGGTCTGGGACTGTGGTTCCAGAGACCTGACTTCAGGAGTGGAAACCTGCATGAGCTCAGCCCCAGCATaGCTCTCCAGCATGGCATTG +
Preference number: 4 (lower is better)
Translates to: GVWDCGSRDLTSGVETCMSSAPA*LSSMAL
Trigger: CAATGCCATGCTGGAGAGCCATGCTGGGGCTGAGCT...CATGCAGGTTTCCACTCCTGAAGTCAGGTCTCTGGAACCACAGTCCCAGACCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CCA 90 bp GCTTCAAGTCTGGCCACAGCTCTCTCTTGTGCTGCCGATGCTCTGTGGGATGACCAGAACTGCTGGCAGTaGAGGGCAAGCCCTGTGTTG +
Preference number: 4 (lower is better)
Translates to: ASSLATALSCAADALWDDQNCWQ*RASPVL
Trigger: CAACACAGGGCTTGCCCTCCACTGCCAGCAGTTCTG...GTCATCCCACAGAGCATCGGCAGCACAAGAGAGAGCTGTGGCCAGACTTGAAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
CDS-3UTR CCA 90 bp GGCCTGTCTGTGTGCACAGCAGGATGGGGTCTGGGACTGTGGTTCCAGAGACCTGGATGGAAAAGGTGCTaGCCAGAAATGCCATGGCGA +
Preference number: 4 (lower is better)
Translates to: GLSVCTAGWGLGLWFQRPGWKRC*PEMPWR
Trigger: TCGCCATGGCATTTCTGGCCAGCACCTTTTCCATCC...AGGTCTCTGGAACCACAGTCCCAGACCCCATCCTGCTGTGCACACAGACAGGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CCA 90 bp GCTTCAAGTCTGGCCACAGCTCTCTCTTGTGCTGCCGATGCTCTGTGGGATGACCAAACTGAACGTGCTTaGCCTGGACGGCCCTCTCAC +
Preference number: 4 (lower is better)
Translates to: ASSLATALSCAADALWDDQTERA*PGRPSH
Trigger: GTGAGAGGGCCGTCCAGGCCAAGCACGTTCAGTTTG...GTCATCCCACAGAGCATCGGCAGCACAAGAGAGAGCTGTGGCCAGACTTGAAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CCA 90 bp AGGTCCCTGGGGTCTCTCTGGATAAGCACTGGAAAGAAGCTCAATCCCCCAGGCGCCATCCCCAGGCAGTaGTTTGGCAGCACCAAGAAC +
Preference number: 4 (lower is better)
Translates to: RSLGSLWISTGKKLNPPGAIPRQ*FGSTKN
Trigger: GTTCTTGGTGCTGCCAAACCACTGCCTGGGGATGGC...GCCTGGGGGATTGAGCTTCTTTCCAGTGCTTATCCAGAGAGACCCCAGGGACCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR TCA 90 bp TCCCCCAGGCTAGCTGCAGTACCAGCTGGGACCAAGGCCTGTCTGTGTGCACAGGGTACTGGATGGCAATaGGGAATGGATCTGAGATGT +
Preference number: 4 (lower is better)
Translates to: SPRLAAVPAGTKACLCAQGTGWQ*GMDLRC
Trigger: ACATCTCAGATCCATTCCTCATTGCCATCCAGTACC...CTGTGCACACAGACAGGCCTTGGTCCCAGCTGGTACTGCAGCTAGCCTGGGGGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR TCA 90 bp AACTTTGCTGCTCATTCCTGGCAGCCTGGAAGTCCTTGTTGCTGCTCAACCCTGCAGGCCATAGAGTGCTaGGTCCAGCAGCAGCATCCC +
Preference number: 4 (lower is better)
Translates to: NFAAHSWQPGSPCCCSTLQAIEC*VQQQHP
Trigger: GGGATGCTGCTGCTGGACTCAGCACTCTATGGCCTG...CAGGGTTGAGCAGCAACAAGGACTTCCAGGCTGCCAGGAATGAGCAGCAAAGTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR TCA 90 bp CTCTGTGGGATGACATCTGGCTCAGGATCAGATCAGCCCGGTCCACTGTCCATATTCTCAGACAGCTGCTaGGCCAGCCTGGATGTGCCT +
Preference number: 4 (lower is better)
Translates to: LCGMTSGSGSDQPGPLSIFSDSC*ASLDVP
Trigger: AGGCACATCCAGGCTGGCTCAGCAGCTGTCTGAGAA...TATGGACAGTGGACCGGGCTGATCTGATCCTGAGCCAGATGTCATCCCACAGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
CDS-3UTR TCA 90 bp TTCCTGGCAGCCTGGAAGTCCTTGTTGCTGCTCAACCCTGTTGGCTTTCTTTCCGGACGGCCCTCTCACTaGCAGCCAGGATGGAAAAGG +
Preference number: 4 (lower is better)
Translates to: FLAAWKSLLLLNPVGFLSGRPSH*QPGWKR
Trigger: CCTTTTCCATCCTGGCTGTCAGTGAGAGGGCCGTCC...GGAAAGAAAGCCAACAGGGTTGAGCAGCAACAAGGACTTCCAGGCTGCCAGGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR TCA 90 bp AACTTTGCTGCTCATTCCTGGCAGCCTGGAAGTCCTTGTTGCTGCTCAACCCTGAGCAGGTCAGCCATGTaGCCATCCCTCGTGAAGGCG +
Preference number: 4 (lower is better)
Translates to: NFAAHSWQPGSPCCCSTLSRSAM*PSLVKA
Trigger: CGCCTTCACGAGGGATGGTCACATGGCTGACCTGCT...CAGGGTTGAGCAGCAACAAGGACTTCCAGGCTGCCAGGAATGAGCAGCAAAGTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR TCA 90 bp GGCCTGTCTGTGTGCACAGCAGGATGGGGTCTGGGACTGTGGTTCCAGAGACCTTGCCCGACAGGATGTTaGATATGGTCAGCCTGGTAT +
Preference number: 4 (lower is better)
Translates to: GLSVCTAGWGLGLWFQRPCPTGC*IWSAWY
Trigger: ATACCAGGCTGACCATATTCAACATCCTGTCGGGCA...AGGTCTCTGGAACCACAGTCCCAGACCCCATCCTGCTGTGCACACAGACAGGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR TCA 90 bp GGGGTCTGGGACTGTGGTTCCAGAGACCTGACTTCAGGAGTGGAAACCTGCATGTCTCATAGAAGTTGCTaGCCGCCATCCCCAGGCAGT +
Preference number: 4 (lower is better)
Translates to: GVWDCGSRDLTSGVETCMSHRSC*PPSPGS
Trigger: ACTGCCTGGGGATGGCGGTCAGCAACTTCTATGAGA...CATGCAGGTTTCCACTCCTGAAGTCAGGTCTCTGGAACCACAGTCCCAGACCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR TCA 90 bp AACTTTGCTGCTCATTCCTGGCAGCCTGGAAGTCCTTGTTGCTGCTCAACCCTGGAGGTAGATGCCCCCTaGGGCAGCCATGGAAGTCAC +
Preference number: 4 (lower is better)
Translates to: NFAAHSWQPGSPCCCSTLEVDAP*GSHGSH
Trigger: GTGACTTCCATGGCTGCCTCAGGGGGCATCTACCTC...CAGGGTTGAGCAGCAACAAGGACTTCCAGGCTGCCAGGAATGAGCAGCAAAGTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR TCA 90 bp AACTTTGCTGCTCATTCCTGGCAGCCTGGAAGTCCTTGTTGCTGCTCAACCCTGAGGCATCCCCTGAGGTaGTGGTCTCCTCCCCAGTCA +
Preference number: 4 (lower is better)
Translates to: NFAAHSWQPGSPCCCSTLRHPLR*WSPPQS
Trigger: TGACTGGGGAGGAGACCATCACCTCAGGGGATGCCT...CAGGGTTGAGCAGCAACAAGGACTTCCAGGCTGCCAGGAATGAGCAGCAAAGTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR GCA 90 bp GGGGTCTGGGACTGTGGTTCCAGAGACCTGACTTCAGGAGTGGAAACCTGCATGAGAGCTTGCGCTTCATaGCCCCACTCAGGAACTTGG +
Preference number: 4 (lower is better)
Translates to: GVWDCGSRDLTSGVETCMRACAS*PHSGTW
Trigger: CCAAGTTCCTGAGTGGGGGCATGAAGCGCAAGCTCT...CATGCAGGTTTCCACTCCTGAAGTCAGGTCTCTGGAACCACAGTCCCAGACCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR GCA 90 bp TGGGATGACATCTGGCTCAGGATCAGATCAGCCCGGTCCACTGTCCATACTGGAGTGCGGTCACTCTTCTaGTGCTGGAGAAGGTCCCAG +
Preference number: 4 (lower is better)
Translates to: WDDIWLRIRSARSTVHTGVRSLF*CWRRSQ
Trigger: CTGGGACCTTCTCCAGCAGCAGAAGAGTGACCGCAC...TCCAGTATGGACAGTGGACCGGGCTGATCTGATCCTGAGCCAGATGTCATCCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR GCA 90 bp GGCCTGTCTGTGTGCACAGCAGGATGGGGTCTGGGACTGTGGTTCCAGAGACCTCCTTCAGGATTGCAGTaGGGTTCTTTTACCAGCGTC +
Preference number: 4 (lower is better)
Translates to: GLSVCTAGWGLGLWFQRPPSGLQ*GSFTSV
Trigger: GACGCTGGTAAAAGAACCGCACTGCAATCCTGAAGG...AGGTCTCTGGAACCACAGTCCCAGACCCCATCCTGCTGTGCACACAGACAGGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR GCA 90 bp GGCCTGTCTGTGTGCACAGCAGGATGGGGTCTGGGACTGTGGTTCCAGAGACCTTTCCCGCCAGCTGTATaGAGCCTTCTTCAGGAACAT +
Preference number: 4 (lower is better)
Translates to: GLSVCTAGWGLGLWFQRPFPPAV*SLLQEH
Trigger: ATGTTCCTGAAGAAGGCTGCATACAGCTGGCGGGAA...AGGTCTCTGGAACCACAGTCCCAGACCCCATCCTGCTGTGCACACAGACAGGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
CDS-3UTR GCA 90 bp GAAGGTATTTGCAACTTTGCTGCTCATTCCTGGCAGCCTGGAAGTCCTTGTTGCTGGTCCTTGGCGACCTaGAGGGTGTTCCGGGGCTGG +
Preference number: 4 (lower is better)
Translates to: EGICNFAAHSWQPGSPCCWSLAT*RVFRGW
Trigger: CCAGCCCCGGAACACCCTGCAGGTCGCCAAGGACCA...GCAACAAGGACTTCCAGGCTGCCAGGAATGAGCAGCAAAGTTGCAAATACCTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
CDS-3UTR CCA 90 bp ATCCCCCAGGCTAGCTGCAGTACCAGCTGGGACCAAGGCCTGTCTGTGTGCACAATCACCATGAGCTTCTaGAACAGCTGCTGTGCAGAG +
Preference number: 4 (lower is better)
Translates to: IPQASCSTSWDQGLSVCTITMSF*NSCCAE
Trigger: CTCTGCACAGCAGCTGTTCCAGAAGCTCATGGTGAT...TGTGCACACAGACAGGCCTTGGTCCCAGCTGGTACTGCAGCTAGCCTGGGGGAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CCA 90 bp TCCCCCAGGCTAGCTGCAGTACCAGCTGGGACCAAGGCCTGTCTGTGTGCACAGAATTTTCCTATGAGCTaGGCTCCCATTGCCATGGCA +
Preference number: 4 (lower is better)
Translates to: SPRLAAVPAGTKACLCAQNFPMS*APIAMA
Trigger: TGCCATGGCAATGGGAGCCCAGCTCATAGGAAAATT...CTGTGCACACAGACAGGCCTTGGTCCCAGCTGGTACTGCAGCTAGCCTGGGGGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CCA 90 bp TTCCTGGCAGCCTGGAAGTCCTTGTTGCTGCTCAACCCTGTTGGCTTTCTTTCCTGGGGTACGCCAAACTaGCCTGGGAAGACAGCCTCC +
Preference number: 4 (lower is better)
Translates to: FLAAWKSLLLLNPVGFLSWGTPN*PGKTAS
Trigger: GGAGGCTGTCTTCCCAGGCCAGTTTGGCGTACCCCA...GGAAAGAAAGCCAACAGGGTTGAGCAGCAACAAGGACTTCCAGGCTGCCAGGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CCA 90 bp CTCTGTGGGATGACATCTGGCTCAGGATCAGATCAGCCCGGTCCACTGTCCATACCCAGATGGCCCTTCTaGACACTGCATCCATGCCTG +
Preference number: 4 (lower is better)
Translates to: LCGMTSGSGSDQPGPLSIPRWPF*TLHPCL
Trigger: CAGGCATGGATGCAGTGTCCAGAAGGGCCATCTGGG...TATGGACAGTGGACCGGGCTGATCTGATCCTGAGCCAGATGTCATCCCACAGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CCA 90 bp GGGGTCTGGGACTGTGGTTCCAGAGACCTGACTTCAGGAGTGGAAACCTGCATGGGAGAAGGTCCCAGATaGCCCTTCTGGACACTGCAT +
Preference number: 4 (lower is better)
Translates to: GVWDCGSRDLTSGVETCMGEGPR*PFWTLH
Trigger: ATGCAGTGTCCAGAAGGGCCATCTGGGACCTTCTCC...CATGCAGGTTTCCACTCCTGAAGTCAGGTCTCTGGAACCACAGTCCCAGACCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CCA 90 bp GGTCTGGGACTGTGGTTCCAGAGACCTGACTTCAGGAGTGGAAACCTGCATGCTAGCTCAGCCCCAGCATaGCTCTCCAGCATGGCATTG +
Preference number: 4 (lower is better)
Translates to: GLGLWFQRPDFRSGNLHASSAPA*LSSMAL
Trigger: CAATGCCATGCTGGAGAGCCATGCTGGGGCTGAGCT...AGCATGCAGGTTTCCACTCCTGAAGTCAGGTCTCTGGAACCACAGTCCCAGACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CCA 90 bp TGGGATGACATCTGGCTCAGGATCAGATCAGCCCGGTCCACTGTCCATACTGGAAGCTCAGCCCCAGCATaGCTCTCCAGCATGGCATTG +
Preference number: 4 (lower is better)
Translates to: WDDIWLRIRSARSTVHTGSSAPA*LSSMAL
Trigger: CAATGCCATGCTGGAGAGCCATGCTGGGGCTGAGCT...TCCAGTATGGACAGTGGACCGGGCTGATCTGATCCTGAGCCAGATGTCATCCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CCA 90 bp TGGGATGACATCTGGCTCAGGATCAGATCAGCCCGGTCCACTGTCCATACTGGACAGAACTGCTGGCAGTaGAGGGCAAGCCCTGTGTTG +
Preference number: 4 (lower is better)
Translates to: WDDIWLRIRSARSTVHTGQNCWQ*RASPVL
Trigger: CAACACAGGGCTTGCCCTCCACTGCCAGCAGTTCTG...TCCAGTATGGACAGTGGACCGGGCTGATCTGATCCTGAGCCAGATGTCATCCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
CDS-3UTR CCA 90 bp GGGGTCTGGGACTGTGGTTCCAGAGACCTGACTTCAGGAGTGGAAACCTGCATGCCCCAGGCAGTGGTTTaGCAGCACCAAGAACACATG +
Preference number: 4 (lower is better)
Translates to: GVWDCGSRDLTSGVETCMPQAVV*QHQEHM
Trigger: CATGTGTTCTTGGTGCTGCCAAACCACTGCCTGGGG...CATGCAGGTTTCCACTCCTGAAGTCAGGTCTCTGGAACCACAGTCCCAGACCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CCA 90 bp GCTTCAAGTCTGGCCACAGCTCTCTCTTGTGCTGCCGATGCTCTGTGGGATGACAAGCACTCCCCTTTCTaGACCGCAAGGGAGATCCTG +
Preference number: 4 (lower is better)
Translates to: ASSLATALSCAADALWDDKHSPF*TAREIL
Trigger: CAGGATCTCCCTTGCGGTCCAGAAAGGGGAGTGCTT...GTCATCCCACAGAGCATCGGCAGCACAAGAGAGAGCTGTGGCCAGACTTGAAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CCA 90 bp AGGTCCCTGGGGTCTCTCTGGATAAGCACTGGAAAGAAGCTCAATCCCCCAGGCAAGCACTCCCCTTTCTaGACCGCAAGGGAGATCCTG +
Preference number: 4 (lower is better)
Translates to: RSLGSLWISTGKKLNPPGKHSPF*TAREIL
Trigger: CAGGATCTCCCTTGCGGTCCAGAAAGGGGAGTGCTT...GCCTGGGGGATTGAGCTTCTTTCCAGTGCTTATCCAGAGAGACCCCAGGGACCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR TCA 90 bp GGCCTGTCTGTGTGCACAGCAGGATGGGGTCTGGGACTGTGGTTCCAGAGACCTTGGCATGGTAACGCATaGTGGCTTTGTCTACAGCAT +
Preference number: 4 (lower is better)
Translates to: GLSVCTAGWGLGLWFQRPWHGNA*WLCLQH
Trigger: ATGCTGTAGACAAAGCCATCATGCGTTACCATGCCA...AGGTCTCTGGAACCACAGTCCCAGACCCCATCCTGCTGTGCACACAGACAGGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR TCA 90 bp ATCCCCCAGGCTAGCTGCAGTACCAGCTGGGACCAAGGCCTGTCTGTGTGCACAAGAATAGGAAGAACATaGGGAACCAAGCGCTCCAGT +
Preference number: 4 (lower is better)
Translates to: IPQASCSTSWDQGLSVCTRIGRT*GTKRSS
Trigger: ACTGGAGCGCTTGGTTCCTCATGTTCTTCCTATTCT...TGTGCACACAGACAGGCCTTGGTCCCAGCTGGTACTGCAGCTAGCCTGGGGGAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR TCA 90 bp ATCCCCCAGGCTAGCTGCAGTACCAGCTGGGACCAAGGCCTGTCTGTGTGCACATGTCCTTCTTCACTTTaGCACAGAACAGGAGGGTCA +
Preference number: 4 (lower is better)
Translates to: IPQASCSTSWDQGLSVCTCPSSL*HRTGGS
Trigger: TGACCCTCCTGTTCTGTGTCAAAGTGAAGAAGGACA...TGTGCACACAGACAGGCCTTGGTCCCAGCTGGTACTGCAGCTAGCCTGGGGGAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR TCA 90 bp TCCCCCAGGCTAGCTGCAGTACCAGCTGGGACCAAGGCCTGTCTGTGTGCACAGAAACTCTTGCGGATCTaGGCCATGTCTTGGGAAATT +
Preference number: 4 (lower is better)
Translates to: SPRLAAVPAGTKACLCAQKLLRI*AMSWEI
Trigger: AATTTCCCAAGACATGGCTCAGATCCGCAAGAGTTT...CTGTGCACACAGACAGGCCTTGGTCCCAGCTGGTACTGCAGCTAGCCTGGGGGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR TCA 90 bp TGGGATGACATCTGGCTCAGGATCAGATCAGCCCGGTCCACTGTCCATACTGGAGGTCAGCTTCGTCCATaGAGTGAGTGGTCAGCAGGA +
Preference number: 4 (lower is better)
Translates to: WDDIWLRIRSARSTVHTGGQLRP*SEWSAG
Trigger: TCCTGCTGACCACTCACTTCATGGACGAAGCTGACC...TCCAGTATGGACAGTGGACCGGGCTGATCTGATCCTGAGCCAGATGTCATCCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR TCA 90 bp AGGTCCCTGGGGTCTCTCTGGATAAGCACTGGAAAGAAGCTCAATCCCCCAGGCTGGTGGTGCACCAGCTaGGAGATTCCTTCAGGATTG +
Preference number: 4 (lower is better)
Translates to: RSLGSLWISTGKKLNPPGWWCTS*EIPSGL
Trigger: CAATCCTGAAGGAATCTCTCAGCTGGTGCACCACCA...GCCTGGGGGATTGAGCTTCTTTCCAGTGCTTATCCAGAGAGACCCCAGGGACCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR TCA 90 bp AGGTCCCTGGGGTCTCTCTGGATAAGCACTGGAAAGAAGCTCAATCCCCCAGGCATCTCAATGGAGGCCTaGGGGCCACACAATAGCTTG +
Preference number: 4 (lower is better)
Translates to: RSLGSLWISTGKKLNPPGISMEA*GPHNSL
Trigger: CAAGCTATTGTGTGGCCCTCAGGCCTCCATTGAGAT...GCCTGGGGGATTGAGCTTCTTTCCAGTGCTTATCCAGAGAGACCCCAGGGACCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
CDS-3UTR TCA 90 bp CATTCCTGGCAGCCTGGAAGTCCTTGTTGCTGCTCAACCCTGTTGGCTTTCTTTGGACGGCCCTCTCACTaGCAGCCAGGATGGAAAAGG +
Preference number: 4 (lower is better)
Translates to: HSWQPGSPCCCSTLLAFFGRPSH*QPGWKR
Trigger: CCTTTTCCATCCTGGCTGTCAGTGAGAGGGCCGTCC...AAAGAAAGCCAACAGGGTTGAGCAGCAACAAGGACTTCCAGGCTGCCAGGAATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR TCA 90 bp GTGTATCCTCAAGAGATGACACTACTCAGCCCTGTAGTGGTCCCTGACAATCCTCCCAGCCGTAGAGCATaGGCAGCAGCAGCAGGTCAG +
Preference number: 4 (lower is better)
Translates to: VYPQEMTLLSPVVVPDNPPSRRA*AAAAGQ
Trigger: CTGACCTGCTGCTGCTGCTCATGCTCTACGGCTGGG...AGGATTGTCAGGGACCACTACAGGGCTGAGTAGTGTCATCTCTTGAGGATACAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR TCA 90 bp TGGGATGACATCTGGCTCAGGATCAGATCAGCCCGGTCCACTGTCCATACTGGATCCGGAAGGCACAGATaGAGGTTCTCAGTCGCCACA +
Preference number: 4 (lower is better)
Translates to: WDDIWLRIRSARSTVHTGSGRHR*RFSVAT
Trigger: TGTGGCGACTGAGAACCTTCATCTGTGCCTTCCGGA...TCCAGTATGGACAGTGGACCGGGCTGATCTGATCCTGAGCCAGATGTCATCCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR TCA 90 bp TTCCTGGCAGCCTGGAAGTCCTTGTTGCTGCTCAACCCTGTTGGCTTTCTTTCCAACAAAGGCATCCCCTaGGGTGATGGTCTCCTCCCC +
Preference number: 4 (lower is better)
Translates to: FLAAWKSLLLLNPVGFLSNKGIP*GDGLLP
Trigger: GGGGAGGAGACCATCACCTCAGGGGATGCCTTTGTT...GGAAAGAAAGCCAACAGGGTTGAGCAGCAACAAGGACTTCCAGGCTGCCAGGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR GCA 90 bp GCTTCAAGTCTGGCCACAGCTCTCTCTTGTGCTGCCGATGCTCTGTGGGATGACCTTTCTCTGGGTCGCTaGCTTCCTCTTCCTTCCCTA +
Preference number: 4 (lower is better)
Translates to: ASSLATALSCAADALWDDLSLGR*LPLPSL
Trigger: TAGGGAAGGAAGAGGAAGGCAGCGACCCAGAGAAAG...GTCATCCCACAGAGCATCGGCAGCACAAGAGAGAGCTGTGGCCAGACTTGAAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR GCA 90 bp CTCTGTGGGATGACATCTGGCTCAGGATCAGATCAGCCCGGTCCACTGTCCATACGGTCACTCTTCTGCTaGTGGAGAAGGTCCCAGATG +
Preference number: 4 (lower is better)
Translates to: LCGMTSGSGSDQPGPLSIRSLFC*WRRSQM
Trigger: CATCTGGGACCTTCTCCAGCAGCAGAAGAGTGACCG...TATGGACAGTGGACCGGGCTGATCTGATCCTGAGCCAGATGTCATCCCACAGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR GCA 90 bp TTCCTGGCAGCCTGGAAGTCCTTGTTGCTGCTCAACCCTGTTGGCTTTCTTTCCGTGCGGTCACTCTTCTaGTGCTGGAGAAGGTCCCAG +
Preference number: 4 (lower is better)
Translates to: FLAAWKSLLLLNPVGFLSVRSLF*CWRRSQ
Trigger: CTGGGACCTTCTCCAGCAGCAGAAGAGTGACCGCAC...GGAAAGAAAGCCAACAGGGTTGAGCAGCAACAAGGACTTCCAGGCTGCCAGGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR GCA 90 bp CATTCCTGGCAGCCTGGAAGTCCTTGTTGCTGCTCAACCCTGTTGGCTTTCTTTTGGCCAAGATGGCGATaGGGTCTCCCAGCAGGTCAG +
Preference number: 4 (lower is better)
Translates to: HSWQPGSPCCCSTLLAFFWPRWR*GLPAGQ
Trigger: CTGACCTGCTGGGAGACCGCATCGCCATCTTGGCCA...AAAGAAAGCCAACAGGGTTGAGCAGCAACAAGGACTTCCAGGCTGCCAGGAATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR GCA 90 bp TGGGATGACATCTGGCTCAGGATCAGATCAGCCCGGTCCACTGTCCATACTGGACCCCGAAGCTTGCGATaGCCAACTCCTTCTGCTTCT +
Preference number: 4 (lower is better)
Translates to: WDDIWLRIRSARSTVHTGPRSLR*PTPSAS
Trigger: AGAAGCAGAAGGAGTTGGGCATCGCAAGCTTCGGGG...TCCAGTATGGACAGTGGACCGGGCTGATCTGATCCTGAGCCAGATGTCATCCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR GCA 90 bp AACTTTGCTGCTCATTCCTGGCAGCCTGGAAGTCCTTGTTGCTGCTCAACCCTGAACATGGCCCAGAACTaGTGGCAGTGGAGGGCAAGC +
Preference number: 4 (lower is better)
Translates to: NFAAHSWQPGSPCCCSTLNMAQN*WQWRAS
Trigger: GCTTGCCCTCCACTGCCAGCAGTTCTGGGCCATGTT...CAGGGTTGAGCAGCAACAAGGACTTCCAGGCTGCCAGGAATGAGCAGCAAAGTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
CDS-3UTR GCA 90 bp GCTTCAAGTCTGGCCACAGCTCTCTCTTGTGCTGCCGATGCTCTGTGGGATGACTCCTGCCTCTCAGCCTaGAGCATGTCCCTTAGATTC +
Preference number: 4 (lower is better)
Translates to: ASSLATALSCAADALWDDSCLSA*SMSLRF
Trigger: GAATCTAAGGGACATGCTGCAGGCTGAGAGGCAGGA...GTCATCCCACAGAGCATCGGCAGCACAAGAGAGAGCTGTGGCCAGACTTGAAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
CDS-3UTR GCA 90 bp GCTTCAAGTCTGGCCACAGCTCTCTCTTGTGCTGCCGATGCTCTGTGGGATGACTCCCTCGTGAAGGCGTaGACATTGAAGGCTTGGAAC +
Preference number: 4 (lower is better)
Translates to: ASSLATALSCAADALWDDSLVKA*TLKAWN
Trigger: GTTCCAAGCCTTCAATGTGCACGCCTTCACGAGGGA...GTCATCCCACAGAGCATCGGCAGCACAAGAGAGAGCTGTGGCCAGACTTGAAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR GCA 90 bp ATCCCCCAGGCTAGCTGCAGTACCAGCTGGGACCAAGGCCTGTCTGTGTGCACAGGATGTTGTACTTCTTaGAGTAGTGGGCAGCAAGCT +
Preference number: 4 (lower is better)
Translates to: IPQASCSTSWDQGLSVCTGCCTS*SSGQQA
Trigger: AGCTTGCTGCCCACTACTGCAAGAAGTACAACATCC...TGTGCACACAGACAGGCCTTGGTCCCAGCTGGTACTGCAGCTAGCCTGGGGGAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR GCA 90 bp CATTCCTGGCAGCCTGGAAGTCCTTGTTGCTGCTCAACCCTGTTGGCTTTCTTTCCGGTTCTGCAGTTCTaGCAGAGTCCACCTCCTCCG +
Preference number: 4 (lower is better)
Translates to: HSWQPGSPCCCSTLLAFFPVLQF*QSPPPP
Trigger: CGGAGGAGGTGGACTCTGGCAGAACTGCAGAACCGG...AAAGAAAGCCAACAGGGTTGAGCAGCAACAAGGACTTCCAGGCTGCCAGGAATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR GCA 90 bp GCTTCAAGTCTGGCCACAGCTCTCTCTTGTGCTGCCGATGCTCTGTGGGATGACAAGCTCAGAAAGACCTaGTCCAGGGAGATCTGGCTC +
Preference number: 4 (lower is better)
Translates to: ASSLATALSCAADALWDDKLRKT*SREIWL
Trigger: GAGCCAGATCTCCCTGGAGCAGGTCTTTCTGAGCTT...GTCATCCCACAGAGCATCGGCAGCACAAGAGAGAGCTGTGGCCAGACTTGAAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CCA 90 bp AGGTCCCTGGGGTCTCTCTGGATAAGCACTGGAAAGAAGCTCAATCCCCCAGGCAGCAGCAGAGGAAGCTaGTACTGGATGGCAATGAGG +
Preference number: 4 (lower is better)
Translates to: RSLGSLWISTGKKLNPPGSSRGS*YWMAMR
Trigger: CCTCATTGCCATCCAGTACCAGCTTCCTCTGCTGCT...GCCTGGGGGATTGAGCTTCTTTCCAGTGCTTATCCAGAGAGACCCCAGGGACCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CCA 90 bp TGGGATGACATCTGGCTCAGGATCAGATCAGCCCGGTCCACTGTCCATACTGGAGGGAGGGGTCGCTGTTaGAAAGGACTGCTATGTCCT +
Preference number: 4 (lower is better)
Translates to: WDDIWLRIRSARSTVHTGGRGRC*KGLLCP
Trigger: AGGACATAGCAGTCCTTTCCAACAGCGACCCCTCCC...TCCAGTATGGACAGTGGACCGGGCTGATCTGATCCTGAGCCAGATGTCATCCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CCA 90 bp GGAACAGAGGATGTGCTTCAAGTCTGGCCACAGCTCTCTCTTGTGCTGCCGATGTACGCCAAACTGGCCTaGGAAGACAGCCTCCACGTA +
Preference number: 4 (lower is better)
Translates to: GTEDVLQVWPQLSLVLPMYAKLA*EDSLHV
Trigger: TACGTGGAGGCTGTCTTCCCAGGCCAGTTTGGCGTA...CATCGGCAGCACAAGAGAGAGCTGTGGCCAGACTTGAAGCACATCCTCTGTTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CCA 90 bp TGGGATGACATCTGGCTCAGGATCAGATCAGCCCGGTCCACTGTCCATACTGGACTGTCAGCAGAGACATaGTCGTGGTCTTCCCAGCAC +
Preference number: 4 (lower is better)
Translates to: WDDIWLRIRSARSTVHTGLSAET*SWSSQH
Trigger: GTGCTGGGAAGACCACGACCATGTCTCTGCTGACAG...TCCAGTATGGACAGTGGACCGGGCTGATCTGATCCTGAGCCAGATGTCATCCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CCA 90 bp GGGGTCTGGGACTGTGGTTCCAGAGACCTGACTTCAGGAGTGGAAACCTGCATGTCCTCAGGACACTTCTaGAGAGAGAGGCCTTTCAGC +
Preference number: 4 (lower is better)
Translates to: GVWDCGSRDLTSGVETCMSSGHF*RERPFS
Trigger: GCTGAAAGGCCTCTCTCTCCAGAAGTGTCCTGAGGA...CATGCAGGTTTCCACTCCTGAAGTCAGGTCTCTGGAACCACAGTCCCAGACCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CCA 90 bp GCTCTGTGGGATGACATCTGGCTCAGGATCAGATCAGCCCGGTCCACTGTCCATCCCCACTCAGGAACTTaGACCGTAAGTCACGCTTGT +
Preference number: 4 (lower is better)
Translates to: ALWDDIWLRIRSARSTVHPHSGT*TVSHAC
Trigger: ACAAGCGTGACTTACGGTCCAAGTTCCTGAGTGGGG...ATGGACAGTGGACCGGGCTGATCTGATCCTGAGCCAGATGTCATCCCACAGAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CCA 90 bp ATCCCCCAGGCTAGCTGCAGTACCAGCTGGGACCAAGGCCTGTCTGTGTGCACACTTGAATGTCCATGCTaGTGTCCACCAGCTTACCAA +
Preference number: 4 (lower is better)
Translates to: IPQASCSTSWDQGLSVCTLECPC*CPPAYQ
Trigger: TTGGTAAGCTGGTGGACACCAGCATGGACATTCAAG...TGTGCACACAGACAGGCCTTGGTCCCAGCTGGTACTGCAGCTAGCCTGGGGGAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
CDS-3UTR CCA 90 bp GTGTATCCTCAAGAGATGACACTACTCAGCCCTGTAGTGGTCCCTGACAATCCTGAAGGTTGTCCACGATaGCCAGGGCAGTGGCTGGGG +
Preference number: 4 (lower is better)
Translates to: VYPQEMTLLSPVVVPDNPEGCPR*PGQWLG
Trigger: CCCCAGCCACTGCCCTGGCCATCGTGGACAACCTTC...AGGATTGTCAGGGACCACTACAGGGCTGAGTAGTGTCATCTCTTGAGGATACAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
CDS-3UTR CCA 90 bp GCTCTGTGGGATGACATCTGGCTCAGGATCAGATCAGCCCGGTCCACTGTCCATGGATGGAAAAGGTGCTaGCCAGAAATGCCATGGCGA +
Preference number: 4 (lower is better)
Translates to: ALWDDIWLRIRSARSTVHGWKRC*PEMPWR
Trigger: TCGCCATGGCATTTCTGGCCAGCACCTTTTCCATCC...ATGGACAGTGGACCGGGCTGATCTGATCCTGAGCCAGATGTCATCCCACAGAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CCA 90 bp TGGGATGACATCTGGCTCAGGATCAGATCAGCCCGGTCCACTGTCCATACTGGACCCCAGGCAGTGGTTTaGCAGCACCAAGAACACATG +
Preference number: 4 (lower is better)
Translates to: WDDIWLRIRSARSTVHTGPQAVV*QHQEHM
Trigger: CATGTGTTCTTGGTGCTGCCAAACCACTGCCTGGGG...TCCAGTATGGACAGTGGACCGGGCTGATCTGATCCTGAGCCAGATGTCATCCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CCA 90 bp GGTCTGGGACTGTGGTTCCAGAGACCTGACTTCAGGAGTGGAAACCTGCATGCTAAACTTGCCCACGCCTaGGGTGCTCCAGGCATAGAA +
Preference number: 4 (lower is better)
Translates to: GLGLWFQRPDFRSGNLHAKLAHA*GAPGIE
Trigger: TTCTATGCCTGGAGCACCCCAGGCGTGGGCAAGTTT...AGCATGCAGGTTTCCACTCCTGAAGTCAGGTCTCTGGAACCACAGTCCCAGACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CCA 90 bp CTCTGTGGGATGACATCTGGCTCAGGATCAGATCAGCCCGGTCCACTGTCCATAAAACTTGCCCACGCCTaGGGTGCTCCAGGCATAGAA +
Preference number: 4 (lower is better)
Translates to: LCGMTSGSGSDQPGPLSIKLAHA*GAPGIE
Trigger: TTCTATGCCTGGAGCACCCCAGGCGTGGGCAAGTTT...TATGGACAGTGGACCGGGCTGATCTGATCCTGAGCCAGATGTCATCCCACAGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR TCA 90 bp TGGGATGACATCTGGCTCAGGATCAGATCAGCCCGGTCCACTGTCCATACTGGAGGTCCTGGCTGTGGTTaGAGCTGTGCTCAAATACCA +
Preference number: 4 (lower is better)
Translates to: WDDIWLRIRSARSTVHTGGPGCG*SCAQIP
Trigger: TGGTATTTGAGCACAGCTTCAACCACAGCCAGGACC...TCCAGTATGGACAGTGGACCGGGCTGATCTGATCCTGAGCCAGATGTCATCCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR TCA 90 bp GCTTCAAGTCTGGCCACAGCTCTCTCTTGTGCTGCCGATGCTCTGTGGGATGACCTTCGAATTTTCCTATaGGCTGGGCTCCCATTGCCA +
Preference number: 4 (lower is better)
Translates to: ASSLATALSCAADALWDDLRIFL*AGLPLP
Trigger: TGGCAATGGGAGCCCAGCTCATAGGAAAATTCGAAG...GTCATCCCACAGAGCATCGGCAGCACAAGAGAGAGCTGTGGCCAGACTTGAAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR TCA 90 bp GGAACAGAGGATGTGCTTCAAGTCTGGCCACAGCTCTCTCTTGTGCTGCCGATGCAAAGTACTCGTTCCTaGGAGCTTTCTCTGGGTCGC +
Preference number: 4 (lower is better)
Translates to: GTEDVLQVWPQLSLVLPMQSTRS*ELSLGR
Trigger: GCGACCCAGAGAAAGCTCTCAGGAACGAGTACTTTG...CATCGGCAGCACAAGAGAGAGCTGTGGCCAGACTTGAAGCACATCCTCTGTTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR TCA 90 bp AACTTTGCTGCTCATTCCTGGCAGCCTGGAAGTCCTTGTTGCTGCTCAACCCTGGGTCAGCTTCGTCCATaGAGTGAGTGGTCAGCAGGA +
Preference number: 4 (lower is better)
Translates to: NFAAHSWQPGSPCCCSTLGQLRP*SEWSAG
Trigger: TCCTGCTGACCACTCACTTCATGGACGAAGCTGACC...CAGGGTTGAGCAGCAACAAGGACTTCCAGGCTGCCAGGAATGAGCAGCAAAGTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR TCA 90 bp GAAGGTATTTGCAACTTTGCTGCTCATTCCTGGCAGCCTGGAAGTCCTTGTTGCAGGGGGACCAGGACCTaGGCTGCCACCATCTTCCAT +
Preference number: 4 (lower is better)
Translates to: EGICNFAAHSWQPGSPCCRGTRT*AATIFH
Trigger: ATGGAAGATGGTGGCAGCTCAGGTCCTGGTCCCCCT...GCAACAAGGACTTCCAGGCTGCCAGGAATGAGCAGCAAAGTTGCAAATACCTTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
CDS-3UTR TCA 90 bp GCTCTGTGGGATGACATCTGGCTCAGGATCAGATCAGCCCGGTCCACTGTCCATGCTCTCCTCTGTCTTTaGAGGATGTTGCTACTAGGC +
Preference number: 4 (lower is better)
Translates to: ALWDDIWLRIRSARSTVHALLCL*RMLLLG
Trigger: GCCTAGTAGCAACATCCTTCAAAGACAGAGGAGAGC...ATGGACAGTGGACCGGGCTGATCTGATCCTGAGCCAGATGTCATCCCACAGAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
CDS-3UTR TCA 90 bp GCTCTGTGGGATGACATCTGGCTCAGGATCAGATCAGCCCGGTCCACTGTCCATGGCCACACAATAGCTTaGACAGAAGGTTGTCCACGA +
Preference number: 4 (lower is better)
Translates to: ALWDDIWLRIRSARSTVHGHTIA*TEGCPR
Trigger: TCGTGGACAACCTTCTGTTCAAGCTATTGTGTGGCC...ATGGACAGTGGACCGGGCTGATCTGATCCTGAGCCAGATGTCATCCCACAGAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
CDS-3UTR TCA 90 bp GAAGGTATTTGCAACTTTGCTGCTCATTCCTGGCAGCCTGGAAGTCCTTGTTGCGGACGGCCCTCTCACTaGCAGCCAGGATGGAAAAGG +
Preference number: 4 (lower is better)
Translates to: EGICNFAAHSWQPGSPCCGRPSH*QPGWKR
Trigger: CCTTTTCCATCCTGGCTGTCAGTGAGAGGGCCGTCC...GCAACAAGGACTTCCAGGCTGCCAGGAATGAGCAGCAAAGTTGCAAATACCTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR TCA 90 bp AGGTCCCTGGGGTCTCTCTGGATAAGCACTGGAAAGAAGCTCAATCCCCCAGGCTGCCCGACAGGATGTTaGATATGGTCAGCCTGGTAT +
Preference number: 4 (lower is better)
Translates to: RSLGSLWISTGKKLNPPGCPTGC*IWSAWY
Trigger: ATACCAGGCTGACCATATTCAACATCCTGTCGGGCA...GCCTGGGGGATTGAGCTTCTTTCCAGTGCTTATCCAGAGAGACCCCAGGGACCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR TCA 90 bp GCTCTGTGGGATGACATCTGGCTCAGGATCAGATCAGCCCGGTCCACTGTCCATTTTTTCCAGCTCCATTaGAACCCAACAGGCCGAAGC +
Preference number: 4 (lower is better)
Translates to: ALWDDIWLRIRSARSTVHFFQLH*NPTGRS
Trigger: GCTTCGGCCTGTTGGGTTTCAATGGAGCTGGAAAAA...ATGGACAGTGGACCGGGCTGATCTGATCCTGAGCCAGATGTCATCCCACAGAGC
54% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR TCA 90 bp GCTCTGTGGGATGACATCTGGCTCAGGATCAGATCAGCCCGGTCCACTGTCCATTCCCTGCCAGTCATGTaGTCAAGCAGTGCATCAAAC +
Preference number: 4 (lower is better)
Translates to: ALWDDIWLRIRSARSTVHSLPVM*SSSASN
Trigger: GTTTGATGCACTGCTTGATCACATGACTGGCAGGGA...ATGGACAGTGGACCGGGCTGATCTGATCCTGAGCCAGATGTCATCCCACAGAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR GCA 90 bp AGGTCCCTGGGGTCTCTCTGGATAAGCACTGGAAAGAAGCTCAATCCCCCAGGCTTTTTCTCCTTCTCCTaGACCACAGCCCGGATGATG +
Preference number: 4 (lower is better)
Translates to: RSLGSLWISTGKKLNPPGFFSFS*TTARMM
Trigger: CATCATCCGGGCTGTGGTGCAGGAGAAGGAGAAAAA...GCCTGGGGGATTGAGCTTCTTTCCAGTGCTTATCCAGAGAGACCCCAGGGACCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR GCA 90 bp GGGGTCTGGGACTGTGGTTCCAGAGACCTGACTTCAGGAGTGGAAACCTGCATGTTTTTCTCCTTCTCCTaGACCACAGCCCGGATGATG +
Preference number: 4 (lower is better)
Translates to: GVWDCGSRDLTSGVETCMFFSFS*TTARMM
Trigger: CATCATCCGGGCTGTGGTGCAGGAGAAGGAGAAAAA...CATGCAGGTTTCCACTCCTGAAGTCAGGTCTCTGGAACCACAGTCCCAGACCCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR GCA 90 bp GGTCTGGGACTGTGGTTCCAGAGACCTGACTTCAGGAGTGGAAACCTGCATGCTGAAGCCACCCACGGCTaGTGCTATGTTGGCTTTACT +
Preference number: 4 (lower is better)
Translates to: GLGLWFQRPDFRSGNLHAEATHG*CYVGFT
Trigger: AGTAAAGCCAACATAGCAGCAGCCGTGGGTGGCTTC...AGCATGCAGGTTTCCACTCCTGAAGTCAGGTCTCTGGAACCACAGTCCCAGACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR GCA 90 bp AACTTTGCTGCTCATTCCTGGCAGCCTGGAAGTCCTTGTTGCTGCTCAACCCTGCGGTCACTCTTCTGCTaGTGGAGAAGGTCCCAGATG +
Preference number: 4 (lower is better)
Translates to: NFAAHSWQPGSPCCCSTLRSLFC*WRRSQM
Trigger: CATCTGGGACCTTCTCCAGCAGCAGAAGAGTGACCG...CAGGGTTGAGCAGCAACAAGGACTTCCAGGCTGCCAGGAATGAGCAGCAAAGTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR GCA 90 bp GTGTATCCTCAAGAGATGACACTACTCAGCCCTGTAGTGGTCCCTGACAATCCTTGGCCAAGATGGCGATaGGGTCTCCCAGCAGGTCAG +
Preference number: 4 (lower is better)
Translates to: VYPQEMTLLSPVVVPDNPWPRWR*GLPAGQ
Trigger: CTGACCTGCTGGGAGACCGCATCGCCATCTTGGCCA...AGGATTGTCAGGGACCACTACAGGGCTGAGTAGTGTCATCTCTTGAGGATACAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR GCA 90 bp AACTTTGCTGCTCATTCCTGGCAGCCTGGAAGTCCTTGTTGCTGCTCAACCCTGCCCCGAAGCTTGCGATaGCCAACTCCTTCTGCTTCT +
Preference number: 4 (lower is better)
Translates to: NFAAHSWQPGSPCCCSTLPRSLR*PTPSAS
Trigger: AGAAGCAGAAGGAGTTGGGCATCGCAAGCTTCGGGG...CAGGGTTGAGCAGCAACAAGGACTTCCAGGCTGCCAGGAATGAGCAGCAAAGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR GCA 90 bp CATTCCTGGCAGCCTGGAAGTCCTTGTTGCTGCTCAACCCTGTTGGCTTTCTTTGACCAGGACCTGAGCTaGCACCATCTTCCATTCCCG +
Preference number: 4 (lower is better)
Translates to: HSWQPGSPCCCSTLLAFFDQDLS*HHLPFP
Trigger: CGGGAATGGAAGATGGTGGCAGCTCAGGTCCTGGTC...AAAGAAAGCCAACAGGGTTGAGCAGCAACAAGGACTTCCAGGCTGCCAGGAATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
CDS-3UTR GCA 90 bp AGGTCCCTGGGGTCTCTCTGGATAAGCACTGGAAAGAAGCTCAATCCCCCAGGCCAAGCTCTGAGGAAGTaGAGTATCGCCGAGTCTCAT +
Preference number: 4 (lower is better)
Translates to: RSLGSLWISTGKKLNPPGQALRK*SIAESH
Trigger: ATGAGACTCGGCGATACTGCACTTCCTCAGAGCTTG...GCCTGGGGGATTGAGCTTCTTTCCAGTGCTTATCCAGAGAGACCCCAGGGACCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR GCA 90 bp GGTCTGGGACTGTGGTTCCAGAGACCTGACTTCAGGAGTGGAAACCTGCATGCTGATGCCTCGGAGCCGTaGATACATAACCAGCATCTC +
Preference number: 4 (lower is better)
Translates to: GLGLWFQRPDFRSGNLHADASEP*IHNQHL
Trigger: GAGATGCTGGTTATGTATGCACGGCTCCGAGGCATC...AGCATGCAGGTTTCCACTCCTGAAGTCAGGTCTCTGGAACCACAGTCCCAGACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CCA 90 bp GTGTATCCTCAAGAGATGACACTACTCAGCCCTGTAGTGGTCCCTGACAATCCTGGGGCAGCTCCTGGATaGACTGGTCCGGGTAAACAG +
Preference number: 4 (lower is better)
Translates to: VYPQEMTLLSPVVVPDNPGAAPG*TGPGKQ
Trigger: CTGTTTACCCGGACCAGTCCATCCAGGAGCTGCCCC...AGGATTGTCAGGGACCACTACAGGGCTGAGTAGTGTCATCTCTTGAGGATACAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CCA 90 bp CTCTGTGGGATGACATCTGGCTCAGGATCAGATCAGCCCGGTCCACTGTCCATAAGGGGGTCCTGGCTGTaGTTGAAGCTGTGCTCAAAT +
Preference number: 4 (lower is better)
Translates to: LCGMTSGSGSDQPGPLSIRGSWL*LKLCSN
Trigger: ATTTGAGCACAGCTTCAACCACAGCCAGGACCCCCT...TATGGACAGTGGACCGGGCTGATCTGATCCTGAGCCAGATGTCATCCCACAGAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CCA 90 bp GGTCTGGGACTGTGGTTCCAGAGACCTGACTTCAGGAGTGGAAACCTGCATGCTAGCAGCAGAGGAAGCTaGTACTGGATGGCAATGAGG +
Preference number: 4 (lower is better)
Translates to: GLGLWFQRPDFRSGNLHASSRGS*YWMAMR
Trigger: CCTCATTGCCATCCAGTACCAGCTTCCTCTGCTGCT...AGCATGCAGGTTTCCACTCCTGAAGTCAGGTCTCTGGAACCACAGTCCCAGACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CCA 90 bp TTCCTGGCAGCCTGGAAGTCCTTGTTGCTGCTCAACCCTGTTGGCTTTCTTTCCGGGAGGGGTCGCTGTTaGAAAGGACTGCTATGTCCT +
Preference number: 4 (lower is better)
Translates to: FLAAWKSLLLLNPVGFLSGRGRC*KGLLCP
Trigger: AGGACATAGCAGTCCTTTCCAACAGCGACCCCTCCC...GGAAAGAAAGCCAACAGGGTTGAGCAGCAACAAGGACTTCCAGGCTGCCAGGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CCA 90 bp CATACTGGAAGGAACATTGACATCCAAGGATGCCTGTGCAGTTGCATTGGGAGCAGGAGGTCCCGCCACTaGATGCCAGTGCCTTTGGCT +
Preference number: 4 (lower is better)
Translates to: HTGRNIDIQGCLCSCIGSRRSRH*MPVPLA
Trigger: AGCCAAAGGCACTGGCATCCAGTGGCGGGACCTCCT...GCTCCCAATGCAACTGCACAGGCATCCTTGGATGTCAATGTTCCTTCCAGTATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CCA 90 bp TTCCTGGCAGCCTGGAAGTCCTTGTTGCTGCTCAACCCTGTTGGCTTTCTTTCCTACGCCAAACTGGCCTaGGAAGACAGCCTCCACGTA +
Preference number: 4 (lower is better)
Translates to: FLAAWKSLLLLNPVGFLSYAKLA*EDSLHV
Trigger: TACGTGGAGGCTGTCTTCCCAGGCCAGTTTGGCGTA...GGAAAGAAAGCCAACAGGGTTGAGCAGCAACAAGGACTTCCAGGCTGCCAGGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CCA 90 bp GGGGTCTGGGACTGTGGTTCCAGAGACCTGACTTCAGGAGTGGAAACCTGCATGAGCTACCAAGTCCTCTaGCTCGGCTTCAAAGTACTC +
Preference number: 4 (lower is better)
Translates to: GVWDCGSRDLTSGVETCMSYQVL*LGFKVL
Trigger: GAGTACTTTGAAGCCGAGCCAGAGGACTTGGTAGCT...CATGCAGGTTTCCACTCCTGAAGTCAGGTCTCTGGAACCACAGTCCCAGACCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CCA 90 bp GCTCTGTGGGATGACATCTGGCTCAGGATCAGATCAGCCCGGTCCACTGTCCATAGCTACCAAGTCCTCTaGCTCGGCTTCAAAGTACTC +
Preference number: 4 (lower is better)
Translates to: ALWDDIWLRIRSARSTVHSYQVL*LGFKVL
Trigger: GAGTACTTTGAAGCCGAGCCAGAGGACTTGGTAGCT...ATGGACAGTGGACCGGGCTGATCTGATCCTGAGCCAGATGTCATCCCACAGAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CCA 90 bp AACTTTGCTGCTCATTCCTGGCAGCCTGGAAGTCCTTGTTGCTGCTCAACCCTGTCACTCTTCTGCTGCTaGAGAAGGTCCCAGATGGCC +
Preference number: 4 (lower is better)
Translates to: NFAAHSWQPGSPCCCSTLSLFCC*RRSQMA
Trigger: GGCCATCTGGGACCTTCTCCAGCAGCAGAAGAGTGA...CAGGGTTGAGCAGCAACAAGGACTTCCAGGCTGCCAGGAATGAGCAGCAAAGTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CCA 90 bp GAAGGTATTTGCAACTTTGCTGCTCATTCCTGGCAGCCTGGAAGTCCTTGTTGCATGGCCCAGAACTGCTaGCAGTGGAGGGCAAGCCCT +
Preference number: 4 (lower is better)
Translates to: EGICNFAAHSWQPGSPCCMAQNC*QWRASP
Trigger: AGGGCTTGCCCTCCACTGCCAGCAGTTCTGGGCCAT...GCAACAAGGACTTCCAGGCTGCCAGGAATGAGCAGCAAAGTTGCAAATACCTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
CDS-3UTR CCA 90 bp TGGGATGACATCTGGCTCAGGATCAGATCAGCCCGGTCCACTGTCCATACTGGAAGTTGGAGATCTCAATaGAGGCCTGAGGGCCACACA +
Preference number: 4 (lower is better)
Translates to: WDDIWLRIRSARSTVHTGSWRSQ*RPEGHT
Trigger: TGTGTGGCCCTCAGGCCTCCATTGAGATCTCCAACT...TCCAGTATGGACAGTGGACCGGGCTGATCTGATCCTGAGCCAGATGTCATCCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
CDS-3UTR CCA 90 bp GGTCTGGGACTGTGGTTCCAGAGACCTGACTTCAGGAGTGGAAACCTGCATGCTAGTTGGAGATCTCAATaGAGGCCTGAGGGCCACACA +
Preference number: 4 (lower is better)
Translates to: GLGLWFQRPDFRSGNLHASWRSQ*RPEGHT
Trigger: TGTGTGGCCCTCAGGCCTCCATTGAGATCTCCAACT...AGCATGCAGGTTTCCACTCCTGAAGTCAGGTCTCTGGAACCACAGTCCCAGACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
CDS-3UTR CCA 90 bp GGTCTGGGACTGTGGTTCCAGAGACCTGACTTCAGGAGTGGAAACCTGCATGCTGGATGGAAAAGGTGCTaGCCAGAAATGCCATGGCGA +
Preference number: 4 (lower is better)
Translates to: GLGLWFQRPDFRSGNLHAGWKRC*PEMPWR
Trigger: TCGCCATGGCATTTCTGGCCAGCACCTTTTCCATCC...AGCATGCAGGTTTCCACTCCTGAAGTCAGGTCTCTGGAACCACAGTCCCAGACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CCA 90 bp AACTTTGCTGCTCATTCCTGGCAGCCTGGAAGTCCTTGTTGCTGCTCAACCCTGCCCCAGGCAGTGGTTTaGCAGCACCAAGAACACATG +
Preference number: 4 (lower is better)
Translates to: NFAAHSWQPGSPCCCSTLPQAVV*QHQEHM
Trigger: CATGTGTTCTTGGTGCTGCCAAACCACTGCCTGGGG...CAGGGTTGAGCAGCAACAAGGACTTCCAGGCTGCCAGGAATGAGCAGCAAAGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CCA 90 bp CATTCCTGGCAGCCTGGAAGTCCTTGTTGCTGCTCAACCCTGTTGGCTTTCTTTGCCATCCCCAGGCAGTaGTTTGGCAGCACCAAGAAC +
Preference number: 4 (lower is better)
Translates to: HSWQPGSPCCCSTLLAFFAIPRQ*FGSTKN
Trigger: GTTCTTGGTGCTGCCAAACCACTGCCTGGGGATGGC...AAAGAAAGCCAACAGGGTTGAGCAGCAACAAGGACTTCCAGGCTGCCAGGAATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR TCA 90 bp TTCCTGGCAGCCTGGAAGTCCTTGTTGCTGCTCAACCCTGTTGGCTTTCTTTCCGGTCCTGGCTGTGGTTaGAGCTGTGCTCAAATACCA +
Preference number: 4 (lower is better)
Translates to: FLAAWKSLLLLNPVGFLSGPGCG*SCAQIP
Trigger: TGGTATTTGAGCACAGCTTCAACCACAGCCAGGACC...GGAAAGAAAGCCAACAGGGTTGAGCAGCAACAAGGACTTCCAGGCTGCCAGGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR TCA 90 bp GCTTCAAGTCTGGCCACAGCTCTCTCTTGTGCTGCCGATGCTCTGTGGGATGACTGGCATGGTAACGCATaGTGGCTTTGTCTACAGCAT +
Preference number: 4 (lower is better)
Translates to: ASSLATALSCAADALWDDWHGNA*WLCLQH
Trigger: ATGCTGTAGACAAAGCCATCATGCGTTACCATGCCA...GTCATCCCACAGAGCATCGGCAGCACAAGAGAGAGCTGTGGCCAGACTTGAAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR TCA 90 bp GCTCTGTGGGATGACATCTGGCTCAGGATCAGATCAGCCCGGTCCACTGTCCATAGAATAGGAAGAACATaGGGAACCAAGCGCTCCAGT +
Preference number: 4 (lower is better)
Translates to: ALWDDIWLRIRSARSTVHRIGRT*GTKRSS
Trigger: ACTGGAGCGCTTGGTTCCTCATGTTCTTCCTATTCT...ATGGACAGTGGACCGGGCTGATCTGATCCTGAGCCAGATGTCATCCCACAGAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR TCA 90 bp GGTCTGGGACTGTGGTTCCAGAGACCTGACTTCAGGAGTGGAAACCTGCATGCTAGTAGGGGGTATAGGTaGAGAAGTACAGGAAGCCAC +
Preference number: 4 (lower is better)
Translates to: GLGLWFQRPDFRSGNLHASRGYR*RSTGSH
Trigger: GTGGCTTCCTGTACTTCTTCACCTATACCCCCTACT...AGCATGCAGGTTTCCACTCCTGAAGTCAGGTCTCTGGAACCACAGTCCCAGACC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR TCA 90 bp TGTAAACATAGACAGGTCCCTGGGGTCTCTCTGGATAAGCACTGGAAAGAAGCTCAGGCCATAGAGTGCTaGGTCCAGCAGCAGCATCCC +
Preference number: 4 (lower is better)
Translates to: CKHRQVPGVSLDKHWKEAQAIEC*VQQQHP
Trigger: GGGATGCTGCTGCTGGACTCAGCACTCTATGGCCTG...AGCTTCTTTCCAGTGCTTATCCAGAGAGACCCCAGGGACCTGTCTATGTTTACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR TCA 90 bp GGGGTCTGGGACTGTGGTTCCAGAGACCTGACTTCAGGAGTGGAAACCTGCATGCTCCGTATTTCTGCTTaGGAAATAGTGAAGACCCGC +
Preference number: 4 (lower is better)
Translates to: GVWDCGSRDLTSGVETCMLRISA*EIVKTR
Trigger: GCGGGTCTTCACTATTTCTCAAGCAGAAATACGGAG...CATGCAGGTTTCCACTCCTGAAGTCAGGTCTCTGGAACCACAGTCCCAGACCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR TCA 90 bp TGTAAACATAGACAGGTCCCTGGGGTCTCTCTGGATAAGCACTGGAAAGAAGCTAGGGGGACCAGGACCTaGGCTGCCACCATCTTCCAT +
Preference number: 4 (lower is better)
Translates to: CKHRQVPGVSLDKHWKEARGTRT*AATIFH
Trigger: ATGGAAGATGGTGGCAGCTCAGGTCCTGGTCCCCCT...AGCTTCTTTCCAGTGCTTATCCAGAGAGACCCCAGGGACCTGTCTATGTTTACA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
CDS-3UTR TCA 90 bp GGAACAGAGGATGTGCTTCAAGTCTGGCCACAGCTCTCTCTTGTGCTGCCGATGGGCCACACAATAGCTTaGACAGAAGGTTGTCCACGA +
Preference number: 4 (lower is better)
Translates to: GTEDVLQVWPQLSLVLPMGHTIA*TEGCPR
Trigger: TCGTGGACAACCTTCTGTTCAAGCTATTGTGTGGCC...CATCGGCAGCACAAGAGAGAGCTGTGGCCAGACTTGAAGCACATCCTCTGTTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
CDS-3UTR TCA 90 bp TGGGATGACATCTGGCTCAGGATCAGATCAGCCCGGTCCACTGTCCATACTGGATGCCCGACAGGATGTTaGATATGGTCAGCCTGGTAT +
Preference number: 4 (lower is better)
Translates to: WDDIWLRIRSARSTVHTGCPTGC*IWSAWY
Trigger: ATACCAGGCTGACCATATTCAACATCCTGTCGGGCA...TCCAGTATGGACAGTGGACCGGGCTGATCTGATCCTGAGCCAGATGTCATCCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR TCA 90 bp CTCTGTGGGATGACATCTGGCTCAGGATCAGATCAGCCCGGTCCACTGTCCATATTTTTCCAGCTCCATTaGAACCCAACAGGCCGAAGC +
Preference number: 4 (lower is better)
Translates to: LCGMTSGSGSDQPGPLSIFFQLH*NPTGRS
Trigger: GCTTCGGCCTGTTGGGTTTCAATGGAGCTGGAAAAA...TATGGACAGTGGACCGGGCTGATCTGATCCTGAGCCAGATGTCATCCCACAGAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR TCA 90 bp GAAGGTATTTGCAACTTTGCTGCTCATTCCTGGCAGCCTGGAAGTCCTTGTTGCAACAAAGGCATCCCCTaGGGTGATGGTCTCCTCCCC +
Preference number: 4 (lower is better)
Translates to: EGICNFAAHSWQPGSPCCNKGIP*GDGLLP
Trigger: GGGGAGGAGACCATCACCTCAGGGGATGCCTTTGTT...GCAACAAGGACTTCCAGGCTGCCAGGAATGAGCAGCAAAGTTGCAAATACCTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR TCA 90 bp CTCTGTGGGATGACATCTGGCTCAGGATCAGATCAGCCCGGTCCACTGTCCATATCCCTGCCAGTCATGTaGTCAAGCAGTGCATCAAAC +
Preference number: 4 (lower is better)
Translates to: LCGMTSGSGSDQPGPLSISLPVM*SSSASN
Trigger: GTTTGATGCACTGCTTGATCACATGACTGGCAGGGA...TATGGACAGTGGACCGGGCTGATCTGATCCTGAGCCAGATGTCATCCCACAGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR GCA 90 bp CTCTGTGGGATGACATCTGGCTCAGGATCAGATCAGCCCGGTCCACTGTCCATATTTTTCTCCTTCTCCTaGACCACAGCCCGGATGATG +
Preference number: 4 (lower is better)
Translates to: LCGMTSGSGSDQPGPLSIFFSFS*TTARMM
Trigger: CATCATCCGGGCTGTGGTGCAGGAGAAGGAGAAAAA...TATGGACAGTGGACCGGGCTGATCTGATCCTGAGCCAGATGTCATCCCACAGAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR GCA 90 bp AGGTCCCTGGGGTCTCTCTGGATAAGCACTGGAAAGAAGCTCAATCCCCCAGGCGGAAATGGAGGAGATTaGAAAACACAGCAGGAACGC +
Preference number: 4 (lower is better)
Translates to: RSLGSLWISTGKKLNPPGGNGGD*KTQQER
Trigger: GCGTTCCTGCTGTGTTTTGCAATCTCCTCCATTTCC...GCCTGGGGGATTGAGCTTCTTTCCAGTGCTTATCCAGAGAGACCCCAGGGACCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR GCA 90 bp CATTCCTGGCAGCCTGGAAGTCCTTGTTGCTGCTCAACCCTGTTGGCTTTCTTTAGAGCTTGCGCTTCATaGCCCCACTCAGGAACTTGG +
Preference number: 4 (lower is better)
Translates to: HSWQPGSPCCCSTLLAFFRACAS*PHSGTW
Trigger: CCAAGTTCCTGAGTGGGGGCATGAAGCGCAAGCTCT...AAAGAAAGCCAACAGGGTTGAGCAGCAACAAGGACTTCCAGGCTGCCAGGAATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR GCA 90 bp GCTCTGTGGGATGACATCTGGCTCAGGATCAGATCAGCCCGGTCCACTGTCCATAGACTTTCAAACCTGTaGGTGCTCTCCTTGGGAAGA +
Preference number: 4 (lower is better)
Translates to: ALWDDIWLRIRSARSTVHRLSNL*VLSLGR
Trigger: TCTTCCCAAGGAGAGCACGCACAGGTTTGAAAGTCT...ATGGACAGTGGACCGGGCTGATCTGATCCTGAGCCAGATGTCATCCCACAGAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR GCA 90 bp GGTCTGGGACTGTGGTTCCAGAGACCTGACTTCAGGAGTGGAAACCTGCATGCTTGGCTTGAATGTCCATaGTGGTGTCCACCAGCTTAC +
Preference number: 4 (lower is better)
Translates to: GLGLWFQRPDFRSGNLHAWLECP*WCPPAY
Trigger: GTAAGCTGGTGGACACCAGCATGGACATTCAAGCCA...AGCATGCAGGTTTCCACTCCTGAAGTCAGGTCTCTGGAACCACAGTCCCAGACC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
CDS-3UTR GCA 90 bp TTCCTGGCAGCCTGGAAGTCCTTGTTGCTGCTCAACCCTGTTGGCTTTCTTTCCCCAGGATGGAAAAGGTaGTGGCCAGAAATGCCATGG +
Preference number: 4 (lower is better)
Translates to: FLAAWKSLLLLNPVGFLSPGWKR*WPEMPW
Trigger: CCATGGCATTTCTGGCCAGCACCTTTTCCATCCTGG...GGAAAGAAAGCCAACAGGGTTGAGCAGCAACAAGGACTTCCAGGCTGCCAGGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR GCA 90 bp GCTTCAAGTCTGGCCACAGCTCTCTCTTGTGCTGCCGATGCTCTGTGGGATGACGGATGTTGTACTTCTTaGAGTAGTGGGCAGCAAGCT +
Preference number: 4 (lower is better)
Translates to: ASSLATALSCAADALWDDGCCTS*SSGQQA
Trigger: AGCTTGCTGCCCACTACTGCAAGAAGTACAACATCC...GTCATCCCACAGAGCATCGGCAGCACAAGAGAGAGCTGTGGCCAGACTTGAAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR GCA 90 bp AGGTCCCTGGGGTCTCTCTGGATAAGCACTGGAAAGAAGCTCAATCCCCCAGGCGGATGTTGTACTTCTTaGAGTAGTGGGCAGCAAGCT +
Preference number: 4 (lower is better)
Translates to: RSLGSLWISTGKKLNPPGGCCTS*SSGQQA
Trigger: AGCTTGCTGCCCACTACTGCAAGAAGTACAACATCC...GCCTGGGGGATTGAGCTTCTTTCCAGTGCTTATCCAGAGAGACCCCAGGGACCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR GCA 90 bp GCTTCAAGTCTGGCCACAGCTCTCTCTTGTGCTGCCGATGCTCTGTGGGATGACTGGACCATGTCTTGGTaGTCATCTTCTAGGATGCTG +
Preference number: 4 (lower is better)
Translates to: ASSLATALSCAADALWDDWTMSW*SSSRML
Trigger: CAGCATCCTAGAAGATGAGCACCAAGACATGGTCCA...GTCATCCCACAGAGCATCGGCAGCACAAGAGAGAGCTGTGGCCAGACTTGAAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR GCA 90 bp GCTCTGTGGGATGACATCTGGCTCAGGATCAGATCAGCCCGGTCCACTGTCCATTGGACCATGTCTTGGTaGTCATCTTCTAGGATGCTG +
Preference number: 4 (lower is better)
Translates to: ALWDDIWLRIRSARSTVHWTMSW*SSSRML
Trigger: CAGCATCCTAGAAGATGAGCACCAAGACATGGTCCA...ATGGACAGTGGACCGGGCTGATCTGATCCTGAGCCAGATGTCATCCCACAGAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR GCA 90 bp AACTTTGCTGCTCATTCCTGGCAGCCTGGAAGTCCTTGTTGCTGCTCAACCCTGAAGCTCAGAAAGACCTaGTCCAGGGAGATCTGGCTC +
Preference number: 4 (lower is better)
Translates to: NFAAHSWQPGSPCCCSTLKLRKT*SREIWL
Trigger: GAGCCAGATCTCCCTGGAGCAGGTCTTTCTGAGCTT...CAGGGTTGAGCAGCAACAAGGACTTCCAGGCTGCCAGGAATGAGCAGCAAAGTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CCA 90 bp TGGGATGACATCTGGCTCAGGATCAGATCAGCCCGGTCCACTGTCCATACTGGAGGCACATTCTCCGACTaGATCTTCAAGCGAAGCCAA +
Preference number: 4 (lower is better)
Translates to: WDDIWLRIRSARSTVHTGGTFSD*IFKRSQ
Trigger: TTGGCTTCGCTTGAAGATCCAGTCGGAGAATGTGCC...TCCAGTATGGACAGTGGACCGGGCTGATCTGATCCTGAGCCAGATGTCATCCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CCA 90 bp TGGGATGACATCTGGCTCAGGATCAGATCAGCCCGGTCCACTGTCCATACTGGAATCACCATGAGCTTCTaGAACAGCTGCTGTGCAGAG +
Preference number: 4 (lower is better)
Translates to: WDDIWLRIRSARSTVHTGITMSF*NSCCAE
Trigger: CTCTGCACAGCAGCTGTTCCAGAAGCTCATGGTGAT...TCCAGTATGGACAGTGGACCGGGCTGATCTGATCCTGAGCCAGATGTCATCCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CCA 90 bp CATTCCTGGCAGCCTGGAAGTCCTTGTTGCTGCTCAACCCTGTTGGCTTTCTTTCTGTCAGCAGAGACATaGTCGTGGTCTTCCCAGCAC +
Preference number: 4 (lower is better)
Translates to: HSWQPGSPCCCSTLLAFFLSAET*SWSSQH
Trigger: GTGCTGGGAAGACCACGACCATGTCTCTGCTGACAG...AAAGAAAGCCAACAGGGTTGAGCAGCAACAAGGACTTCCAGGCTGCCAGGAATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CCA 90 bp AACTTTGCTGCTCATTCCTGGCAGCCTGGAAGTCCTTGTTGCTGCTCAACCCTGTCCTCAGGACACTTCTaGAGAGAGAGGCCTTTCAGC +
Preference number: 4 (lower is better)
Translates to: NFAAHSWQPGSPCCCSTLSSGHF*RERPFS
Trigger: GCTGAAAGGCCTCTCTCTCCAGAAGTGTCCTGAGGA...CAGGGTTGAGCAGCAACAAGGACTTCCAGGCTGCCAGGAATGAGCAGCAAAGTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CCA 90 bp TGTAAACATAGACAGGTCCCTGGGGTCTCTCTGGATAAGCACTGGAAAGAAGCTATGGCCCAGAACTGCTaGCAGTGGAGGGCAAGCCCT +
Preference number: 4 (lower is better)
Translates to: CKHRQVPGVSLDKHWKEAMAQNC*QWRASP
Trigger: AGGGCTTGCCCTCCACTGCCAGCAGTTCTGGGCCAT...AGCTTCTTTCCAGTGCTTATCCAGAGAGACCCCAGGGACCTGTCTATGTTTACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
CDS-3UTR CCA 90 bp CATTCCTGGCAGCCTGGAAGTCCTTGTTGCTGCTCAACCCTGTTGGCTTTCTTTAAGCACTCCCCTTTCTaGACCGCAAGGGAGATCCTG +
Preference number: 4 (lower is better)
Translates to: HSWQPGSPCCCSTLLAFFKHSPF*TAREIL
Trigger: CAGGATCTCCCTTGCGGTCCAGAAAGGGGAGTGCTT...AAAGAAAGCCAACAGGGTTGAGCAGCAACAAGGACTTCCAGGCTGCCAGGAATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR TCA 90 bp TGGGATGACATCTGGCTCAGGATCAGATCAGCCCGGTCCACTGTCCATACTGGATGGCATGGTAACGCATaGTGGCTTTGTCTACAGCAT +
Preference number: 4 (lower is better)
Translates to: WDDIWLRIRSARSTVHTGWHGNA*WLCLQH
Trigger: ATGCTGTAGACAAAGCCATCATGCGTTACCATGCCA...TCCAGTATGGACAGTGGACCGGGCTGATCTGATCCTGAGCCAGATGTCATCCCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR TCA 90 bp GGAACAGAGGATGTGCTTCAAGTCTGGCCACAGCTCTCTCTTGTGCTGCCGATGAGAATAGGAAGAACATaGGGAACCAAGCGCTCCAGT +
Preference number: 4 (lower is better)
Translates to: GTEDVLQVWPQLSLVLPMRIGRT*GTKRSS
Trigger: ACTGGAGCGCTTGGTTCCTCATGTTCTTCCTATTCT...CATCGGCAGCACAAGAGAGAGCTGTGGCCAGACTTGAAGCACATCCTCTGTTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR TCA 90 bp AACTTTGCTGCTCATTCCTGGCAGCCTGGAAGTCCTTGTTGCTGCTCAACCCTGAGTAGGGGGTATAGGTaGAGAAGTACAGGAAGCCAC +
Preference number: 4 (lower is better)
Translates to: NFAAHSWQPGSPCCCSTLSRGYR*RSTGSH
Trigger: GTGGCTTCCTGTACTTCTTCACCTATACCCCCTACT...CAGGGTTGAGCAGCAACAAGGACTTCCAGGCTGCCAGGAATGAGCAGCAAAGTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR TCA 90 bp GGTCTGGGACTGTGGTTCCAGAGACCTGACTTCAGGAGTGGAAACCTGCATGCTCAGGACAAGAGCTTTTaGCTCAGTGTCATCCAGTTG +
Preference number: 4 (lower is better)
Translates to: GLGLWFQRPDFRSGNLHAQDKSF*LSVIQL
Trigger: CAACTGGATGACACTGAGTCAAAAGCTCTTGTCCTG...AGCATGCAGGTTTCCACTCCTGAAGTCAGGTCTCTGGAACCACAGTCCCAGACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR TCA 90 bp TCATATGTAAACATAGACAGGTCCCTGGGGTCTCTCTGGATAAGCACTGGAAAGCAGGCCATAGAGTGCTaGGTCCAGCAGCAGCATCCC +
Preference number: 4 (lower is better)
Translates to: SYVNIDRSLGSLWISTGKQAIEC*VQQQHP
Trigger: GGGATGCTGCTGCTGGACTCAGCACTCTATGGCCTG...CTTTCCAGTGCTTATCCAGAGAGACCCCAGGGACCTGTCTATGTTTACATATGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR TCA 90 bp CATTCCTGGCAGCCTGGAAGTCCTTGTTGCTGCTCAACCCTGTTGGCTTTCTTTCAAAGTACTCGTTCCTaGGAGCTTTCTCTGGGTCGC +
Preference number: 4 (lower is better)
Translates to: HSWQPGSPCCCSTLLAFFQSTRS*ELSLGR
Trigger: GCGACCCAGAGAAAGCTCTCAGGAACGAGTACTTTG...AAAGAAAGCCAACAGGGTTGAGCAGCAACAAGGACTTCCAGGCTGCCAGGAATG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR TCA 90 bp GGAACAGAGGATGTGCTTCAAGTCTGGCCACAGCTCTCTCTTGTGCTGCCGATGTGTGTAGCATCTGCTTaGCTTCCTCAGGACACTTCT +
Preference number: 4 (lower is better)
Translates to: GTEDVLQVWPQLSLVLPMCVASA*LPQDTS
Trigger: AGAAGTGTCCTGAGGAAGTCAAGCAGATGCTACACA...CATCGGCAGCACAAGAGAGAGCTGTGGCCAGACTTGAAGCACATCCTCTGTTCC
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR TCA 90 bp GTGTATCCTCAAGAGATGACACTACTCAGCCCTGTAGTGGTCCCTGACAATCCTTCTCATAGAAGTTGCTaGCCGCCATCCCCAGGCAGT +
Preference number: 4 (lower is better)
Translates to: VYPQEMTLLSPVVVPDNPSHRSC*PPSPGS
Trigger: ACTGCCTGGGGATGGCGGTCAGCAACTTCTATGAGA...AGGATTGTCAGGGACCACTACAGGGCTGAGTAGTGTCATCTCTTGAGGATACAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR TCA 90 bp CATACTGGAAGGAACATTGACATCCAAGGATGCCTGTGCAGTTGCATTGGGAGCTCCGGAAGGCACAGATaGAGGTTCTCAGTCGCCACA +
Preference number: 4 (lower is better)
Translates to: HTGRNIDIQGCLCSCIGSSGRHR*RFSVAT
Trigger: TGTGGCGACTGAGAACCTTCATCTGTGCCTTCCGGA...GCTCCCAATGCAACTGCACAGGCATCCTTGGATGTCAATGTTCCTTCCAGTATG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR TCA 90 bp GAAGGTATTTGCAACTTTGCTGCTCATTCCTGGCAGCCTGGAAGTCCTTGTTGCTCCGGAAGGCACAGATaGAGGTTCTCAGTCGCCACA +
Preference number: 4 (lower is better)
Translates to: EGICNFAAHSWQPGSPCCSGRHR*RFSVAT
Trigger: TGTGGCGACTGAGAACCTTCATCTGTGCCTTCCGGA...GCAACAAGGACTTCCAGGCTGCCAGGAATGAGCAGCAAAGTTGCAAATACCTTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR GCA 90 bp CTCTGTGGGATGACATCTGGCTCAGGATCAGATCAGCCCGGTCCACTGTCCATAGGAAATGGAGGAGATTaGAAAACACAGCAGGAACGC +
Preference number: 4 (lower is better)
Translates to: LCGMTSGSGSDQPGPLSIGNGGD*KTQQER
Trigger: GCGTTCCTGCTGTGTTTTGCAATCTCCTCCATTTCC...TATGGACAGTGGACCGGGCTGATCTGATCCTGAGCCAGATGTCATCCCACAGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR GCA 90 bp TATCTTCCCTTCATGAAGGTATTTGCAACTTTGCTGCTCATTCCTGGCAGCCTGTGGCCAAGATGGCGATaGGGTCTCCCAGCAGGTCAG +
Preference number: 4 (lower is better)
Translates to: YLPFMKVFATLLLIPGSLWPRWR*GLPAGQ
Trigger: CTGACCTGCTGGGAGACCGCATCGCCATCTTGGCCA...CAGGCTGCCAGGAATGAGCAGCAAAGTTGCAAATACCTTCATGAAGGGAAGATA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR GCA 90 bp TGTAAACATAGACAGGTCCCTGGGGTCTCTCTGGATAAGCACTGGAAAGAAGCTCTTGCCCGCCTCTCATaGTGGTACTGCAGAGCAGGA +
Preference number: 4 (lower is better)
Translates to: CKHRQVPGVSLDKHWKEALARLS*WYCRAG
Trigger: TCCTGCTCTGCAGTACCAGCATGAGAGGCGGGCAAG...AGCTTCTTTCCAGTGCTTATCCAGAGAGACCCCAGGGACCTGTCTATGTTTACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
CDS-3UTR GCA 90 bp CATTCCTGGCAGCCTGGAAGTCCTTGTTGCTGCTCAACCCTGTTGGCTTTCTTTCCAGGATGGAAAAGGTaGTGGCCAGAAATGCCATGG +
Preference number: 4 (lower is better)
Translates to: HSWQPGSPCCCSTLLAFFPGWKR*WPEMPW
Trigger: CCATGGCATTTCTGGCCAGCACCTTTTCCATCCTGG...AAAGAAAGCCAACAGGGTTGAGCAGCAACAAGGACTTCCAGGCTGCCAGGAATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR GCA 90 bp TTCCTGGCAGCCTGGAAGTCCTTGTTGCTGCTCAACCCTGTTGGCTTTCTTTCCCAAGCTCTGAGGAAGTaGAGTATCGCCGAGTCTCAT +
Preference number: 4 (lower is better)
Translates to: FLAAWKSLLLLNPVGFLSQALRK*SIAESH
Trigger: ATGAGACTCGGCGATACTGCACTTCCTCAGAGCTTG...GGAAAGAAAGCCAACAGGGTTGAGCAGCAACAAGGACTTCCAGGCTGCCAGGAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CCA 90 bp TTCCTGGCAGCCTGGAAGTCCTTGTTGCTGCTCAACCCTGTTGGCTTTCTTTCCGGCACATTCTCCGACTaGATCTTCAAGCGAAGCCAA +
Preference number: 4 (lower is better)
Translates to: FLAAWKSLLLLNPVGFLSGTFSD*IFKRSQ
Trigger: TTGGCTTCGCTTGAAGATCCAGTCGGAGAATGTGCC...GGAAAGAAAGCCAACAGGGTTGAGCAGCAACAAGGACTTCCAGGCTGCCAGGAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CCA 90 bp GAAGGTATTTGCAACTTTGCTGCTCATTCCTGGCAGCCTGGAAGTCCTTGTTGCGGTCCGGGTAAACAGTaGCATTGGGCACATTCTCCG +
Preference number: 4 (lower is better)
Translates to: EGICNFAAHSWQPGSPCCGPGKQ*HWAHSP
Trigger: CGGAGAATGTGCCCAATGCCACTGTTTACCCGGACC...GCAACAAGGACTTCCAGGCTGCCAGGAATGAGCAGCAAAGTTGCAAATACCTTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CCA 90 bp AACTTTGCTGCTCATTCCTGGCAGCCTGGAAGTCCTTGTTGCTGCTCAACCCTGATCACCATGAGCTTCTaGAACAGCTGCTGTGCAGAG +
Preference number: 4 (lower is better)
Translates to: NFAAHSWQPGSPCCCSTLITMSF*NSCCAE
Trigger: CTCTGCACAGCAGCTGTTCCAGAAGCTCATGGTGAT...CAGGGTTGAGCAGCAACAAGGACTTCCAGGCTGCCAGGAATGAGCAGCAAAGTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CCA 90 bp TGGGATGACATCTGGCTCAGGATCAGATCAGCCCGGTCCACTGTCCATACTGGAAGAGGAAGCTGGTACTaGATGGCAATGAGGAATGGA +
Preference number: 4 (lower is better)
Translates to: WDDIWLRIRSARSTVHTGRGSWY*MAMRNG
Trigger: TCCATTCCTCATTGCCATCCAGTACCAGCTTCCTCT...TCCAGTATGGACAGTGGACCGGGCTGATCTGATCCTGAGCCAGATGTCATCCCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CCA 90 bp TATCTTCCCTTCATGAAGGTATTTGCAACTTTGCTGCTCATTCCTGGCAGCCTGAGGAGGTCCCGCCACTaGATGCCAGTGCCTTTGGCT +
Preference number: 4 (lower is better)
Translates to: YLPFMKVFATLLLIPGSLRRSRH*MPVPLA
Trigger: AGCCAAAGGCACTGGCATCCAGTGGCGGGACCTCCT...CAGGCTGCCAGGAATGAGCAGCAAAGTTGCAAATACCTTCATGAAGGGAAGATA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CCA 90 bp CATACTGGAAGGAACATTGACATCCAAGGATGCCTGTGCAGTTGCATTGGGAGCTACGCCAAACTGGCCTaGGAAGACAGCCTCCACGTA +
Preference number: 4 (lower is better)
Translates to: HTGRNIDIQGCLCSCIGSYAKLA*EDSLHV
Trigger: TACGTGGAGGCTGTCTTCCCAGGCCAGTTTGGCGTA...GCTCCCAATGCAACTGCACAGGCATCCTTGGATGTCAATGTTCCTTCCAGTATG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CCA 90 bp TCATATGTAAACATAGACAGGTCCCTGGGGTCTCTCTGGATAAGCACTGGAAAGTGGGGTACGCCAAACTaGCCTGGGAAGACAGCCTCC +
Preference number: 4 (lower is better)
Translates to: SYVNIDRSLGSLWISTGKWGTPN*PGKTAS
Trigger: GGAGGCTGTCTTCCCAGGCCAGTTTGGCGTACCCCA...CTTTCCAGTGCTTATCCAGAGAGACCCCAGGGACCTGTCTATGTTTACATATGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CCA 90 bp GAAGGTATTTGCAACTTTGCTGCTCATTCCTGGCAGCCTGGAAGTCCTTGTTGCCCTGAGAGCTTTCTCTaGGTCGCTGCCTTCCTCTTC +
Preference number: 4 (lower is better)
Translates to: EGICNFAAHSWQPGSPCCPESFL*VAAFLF
Trigger: GAAGAGGAAGGCAGCGACCCAGAGAAAGCTCTCAGG...GCAACAAGGACTTCCAGGCTGCCAGGAATGAGCAGCAAAGTTGCAAATACCTTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CCA 90 bp GGAACAGAGGATGTGCTTCAAGTCTGGCCACAGCTCTCTCTTGTGCTGCCGATGTCCTTATTGCCCACTTaGAACACCTTGGAGAGATGC +
Preference number: 4 (lower is better)
Translates to: GTEDVLQVWPQLSLVLPMSLLPT*NTLERC
Trigger: GCATCTCTCCAAGGTGTTCCAAGTGGGCAATAAGGA...CATCGGCAGCACAAGAGAGAGCTGTGGCCAGACTTGAAGCACATCCTCTGTTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CCA 90 bp CATACTGGAAGGAACATTGACATCCAAGGATGCCTGTGCAGTTGCATTGGGAGCGCAGTGGCTGGGGAGTaGTATGCCTGGTTGTTGAAC +
Preference number: 4 (lower is better)
Translates to: HTGRNIDIQGCLCSCIGSAVAGE*YAWLLN
Trigger: GTTCAACAACCAGGCATACCACTCCCCAGCCACTGC...GCTCCCAATGCAACTGCACAGGCATCCTTGGATGTCAATGTTCCTTCCAGTATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
CDS-3UTR TCA 90 bp TTCCTGGCAGCCTGGAAGTCCTTGTTGCTGCTCAACCCTGTTGGCTTTCTTTCCTGTCCTTCTTCACTTTaGCACAGAACAGGAGGGTCA +
Preference number: 4 (lower is better)
Translates to: FLAAWKSLLLLNPVGFLSCPSSL*HRTGGS
Trigger: TGACCCTCCTGTTCTGTGTCAAAGTGAAGAAGGACA...GGAAAGAAAGCCAACAGGGTTGAGCAGCAACAAGGACTTCCAGGCTGCCAGGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR TCA 90 bp GGTCTGGGACTGTGGTTCCAGAGACCTGACTTCAGGAGTGGAAACCTGCATGCTAAACTCTTGCGGATCTaGGCCATGTCTTGGGAAATT +
Preference number: 4 (lower is better)
Translates to: GLGLWFQRPDFRSGNLHAKLLRI*AMSWEI
Trigger: AATTTCCCAAGACATGGCTCAGATCCGCAAGAGTTT...AGCATGCAGGTTTCCACTCCTGAAGTCAGGTCTCTGGAACCACAGTCCCAGACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR TCA 90 bp TTCCTGGCAGCCTGGAAGTCCTTGTTGCTGCTCAACCCTGTTGGCTTTCTTTCCTGTGTAGCATCTGCTTaGCTTCCTCAGGACACTTCT +
Preference number: 4 (lower is better)
Translates to: FLAAWKSLLLLNPVGFLSCVASA*LPQDTS
Trigger: AGAAGTGTCCTGAGGAAGTCAAGCAGATGCTACACA...GGAAAGAAAGCCAACAGGGTTGAGCAGCAACAAGGACTTCCAGGCTGCCAGGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR TCA 90 bp AACTTTGCTGCTCATTCCTGGCAGCCTGGAAGTCCTTGTTGCTGCTCAACCCTGCTCCGTATTTCTGCTTaGGAAATAGTGAAGACCCGC +
Preference number: 4 (lower is better)
Translates to: NFAAHSWQPGSPCCCSTLLRISA*EIVKTR
Trigger: GCGGGTCTTCACTATTTCTCAAGCAGAAATACGGAG...CAGGGTTGAGCAGCAACAAGGACTTCCAGGCTGCCAGGAATGAGCAGCAAAGTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR TCA 90 bp GAAGGTATTTGCAACTTTGCTGCTCATTCCTGGCAGCCTGGAAGTCCTTGTTGCTGGTGGTGCACCAGCTaGGAGATTCCTTCAGGATTG +
Preference number: 4 (lower is better)
Translates to: EGICNFAAHSWQPGSPCCWWCTS*EIPSGL
Trigger: CAATCCTGAAGGAATCTCTCAGCTGGTGCACCACCA...GCAACAAGGACTTCCAGGCTGCCAGGAATGAGCAGCAAAGTTGCAAATACCTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR GCA 90 bp GTGTATCCTCAAGAGATGACACTACTCAGCCCTGTAGTGGTCCCTGACAATCCTGAAGCCACCCACGGCTaGTGCTATGTTGGCTTTACT +
Preference number: 4 (lower is better)
Translates to: VYPQEMTLLSPVVVPDNPEATHG*CYVGFT
Trigger: AGTAAAGCCAACATAGCAGCAGCCGTGGGTGGCTTC...AGGATTGTCAGGGACCACTACAGGGCTGAGTAGTGTCATCTCTTGAGGATACAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR GCA 90 bp GAAGGTATTTGCAACTTTGCTGCTCATTCCTGGCAGCCTGGAAGTCCTTGTTGCCTTTCTCTGGGTCGCTaGCTTCCTCTTCCTTCCCTA +
Preference number: 4 (lower is better)
Translates to: EGICNFAAHSWQPGSPCCLSLGR*LPLPSL
Trigger: TAGGGAAGGAAGAGGAAGGCAGCGACCCAGAGAAAG...GCAACAAGGACTTCCAGGCTGCCAGGAATGAGCAGCAAAGTTGCAAATACCTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR GCA 90 bp TATCTTCCCTTCATGAAGGTATTTGCAACTTTGCTGCTCATTCCTGGCAGCCTGTGGTCAGCAGGACGGTaGGGTCACTCTTCTGCTGCT +
Preference number: 4 (lower is better)
Translates to: YLPFMKVFATLLLIPGSLWSAGR*GHSSAA
Trigger: AGCAGCAGAAGAGTGACCGCACCGTCCTGCTGACCA...CAGGCTGCCAGGAATGAGCAGCAAAGTTGCAAATACCTTCATGAAGGGAAGATA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR GCA 90 bp TATCTTCCCTTCATGAAGGTATTTGCAACTTTGCTGCTCATTCCTGGCAGCCTGCAAAGCCCAGTCGCTTaGCCGCCTCTCATGCTGGTA +
Preference number: 4 (lower is better)
Translates to: YLPFMKVFATLLLIPGSLQSPVA*PPLMLV
Trigger: TACCAGCATGAGAGGCGGGCAAGCGACTGGGCTTTG...CAGGCTGCCAGGAATGAGCAGCAAAGTTGCAAATACCTTCATGAAGGGAAGATA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
CDS-3UTR GCA 90 bp TATCTTCCCTTCATGAAGGTATTTGCAACTTTGCTGCTCATTCCTGGCAGCCTGAACATGGCCCAGAACTaGTGGCAGTGGAGGGCAAGC +
Preference number: 4 (lower is better)
Translates to: YLPFMKVFATLLLIPGSLNMAQN*WQWRAS
Trigger: GCTTGCCCTCCACTGCCAGCAGTTCTGGGCCATGTT...CAGGCTGCCAGGAATGAGCAGCAAAGTTGCAAATACCTTCATGAAGGGAAGATA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
CDS-3UTR GCA 90 bp TCATATGTAAACATAGACAGGTCCCTGGGGTCTCTCTGGATAAGCACTGGAAAGGACCAGGACCTGAGCTaGCACCATCTTCCATTCCCG +
Preference number: 4 (lower is better)
Translates to: SYVNIDRSLGSLWISTGKDQDLS*HHLPFP
Trigger: CGGGAATGGAAGATGGTGGCAGCTCAGGTCCTGGTC...CTTTCCAGTGCTTATCCAGAGAGACCCCAGGGACCTGTCTATGTTTACATATGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
CDS-3UTR GCA 90 bp GTGTATCCTCAAGAGATGACACTACTCAGCCCTGTAGTGGTCCCTGACAATCCTTCCCTCGTGAAGGCGTaGACATTGAAGGCTTGGAAC +
Preference number: 4 (lower is better)
Translates to: VYPQEMTLLSPVVVPDNPSLVKA*TLKAWN
Trigger: GTTCCAAGCCTTCAATGTGCACGCCTTCACGAGGGA...AGGATTGTCAGGGACCACTACAGGGCTGAGTAGTGTCATCTCTTGAGGATACAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR GCA 90 bp GAAGGTATTTGCAACTTTGCTGCTCATTCCTGGCAGCCTGGAAGTCCTTGTTGCGATGCCTCGGAGCCGTaGATACATAACCAGCATCTC +
Preference number: 4 (lower is better)
Translates to: EGICNFAAHSWQPGSPCCDASEP*IHNQHL
Trigger: GAGATGCTGGTTATGTATGCACGGCTCCGAGGCATC...GCAACAAGGACTTCCAGGCTGCCAGGAATGAGCAGCAAAGTTGCAAATACCTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR GCA 90 bp CATACTGGAAGGAACATTGACATCCAAGGATGCCTGTGCAGTTGCATTGGGAGCGCTCATCTTCTAGGATaGTGCCTGGGAAGGTCAGGT +
Preference number: 4 (lower is better)
Translates to: HTGRNIDIQGCLCSCIGSAHLLG*CLGRSG
Trigger: ACCTGACCTTCCCAGGCAGCATCCTAGAAGATGAGC...GCTCCCAATGCAACTGCACAGGCATCCTTGGATGTCAATGTTCCTTCCAGTATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR GCA 90 bp GTGTATCCTCAAGAGATGACACTACTCAGCCCTGTAGTGGTCCCTGACAATCCTGCTCATCTTCTAGGATaGTGCCTGGGAAGGTCAGGT +
Preference number: 4 (lower is better)
Translates to: VYPQEMTLLSPVVVPDNPAHLLG*CLGRSG
Trigger: ACCTGACCTTCCCAGGCAGCATCCTAGAAGATGAGC...AGGATTGTCAGGGACCACTACAGGGCTGAGTAGTGTCATCTCTTGAGGATACAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CCA 90 bp AACTTTGCTGCTCATTCCTGGCAGCCTGGAAGTCCTTGTTGCTGCTCAACCCTGAATTTTCCTATGAGCTaGGCTCCCATTGCCATGGCA +
Preference number: 4 (lower is better)
Translates to: NFAAHSWQPGSPCCCSTLNFPMS*APIAMA
Trigger: TGCCATGGCAATGGGAGCCCAGCTCATAGGAAAATT...CAGGGTTGAGCAGCAACAAGGACTTCCAGGCTGCCAGGAATGAGCAGCAAAGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CCA 90 bp GAAGGTATTTGCAACTTTGCTGCTCATTCCTGGCAGCCTGGAAGTCCTTGTTGCTCCTCAGGACACTTCTaGAGAGAGAGGCCTTTCAGC +
Preference number: 4 (lower is better)
Translates to: EGICNFAAHSWQPGSPCCSSGHF*RERPFS
Trigger: GCTGAAAGGCCTCTCTCTCCAGAAGTGTCCTGAGGA...GCAACAAGGACTTCCAGGCTGCCAGGAATGAGCAGCAAAGTTGCAAATACCTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CCA 90 bp TCATATGTAAACATAGACAGGTCCCTGGGGTCTCTCTGGATAAGCACTGGAAAGCAAACTGAACGTGCTTaGCCTGGACGGCCCTCTCAC +
Preference number: 4 (lower is better)
Translates to: SYVNIDRSLGSLWISTGKQTERA*PGRPSH
Trigger: GTGAGAGGGCCGTCCAGGCCAAGCACGTTCAGTTTG...CTTTCCAGTGCTTATCCAGAGAGACCCCAGGGACCTGTCTATGTTTACATATGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR TCA 90 bp GGTCTGGGACTGTGGTTCCAGAGACCTGACTTCAGGAGTGGAAACCTGCATGCTAAAAAGTGGAAAAAGTaGAGTGGTATGCCAGCCTTC +
Preference number: 4 (lower is better)
Translates to: GLGLWFQRPDFRSGNLHAKKWKK*SGMPAF
Trigger: GAAGGCTGGCATACCACTTCACTTTTTCCACTTTTT...AGCATGCAGGTTTCCACTCCTGAAGTCAGGTCTCTGGAACCACAGTCCCAGACC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR TCA 90 bp CATTCCTGGCAGCCTGGAAGTCCTTGTTGCTGCTCAACCCTGTTGGCTTTCTTTGGTACTGGATGGCAATaGGGAATGGATCTGAGATGT +
Preference number: 4 (lower is better)
Translates to: HSWQPGSPCCCSTLLAFFGTGWQ*GMDLRC
Trigger: ACATCTCAGATCCATTCCTCATTGCCATCCAGTACC...AAAGAAAGCCAACAGGGTTGAGCAGCAACAAGGACTTCCAGGCTGCCAGGAATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR TCA 90 bp CATTCCTGGCAGCCTGGAAGTCCTTGTTGCTGCTCAACCCTGTTGGCTTTCTTTCAGGACAAGAGCTTTTaGCTCAGTGTCATCCAGTTG +
Preference number: 4 (lower is better)
Translates to: HSWQPGSPCCCSTLLAFFQDKSF*LSVIQL
Trigger: CAACTGGATGACACTGAGTCAAAAGCTCTTGTCCTG...AAAGAAAGCCAACAGGGTTGAGCAGCAACAAGGACTTCCAGGCTGCCAGGAATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR TCA 90 bp TATCTTCCCTTCATGAAGGTATTTGCAACTTTGCTGCTCATTCCTGGCAGCCTGGGTCAGCTTCGTCCATaGAGTGAGTGGTCAGCAGGA +
Preference number: 4 (lower is better)
Translates to: YLPFMKVFATLLLIPGSLGQLRP*SEWSAG
Trigger: TCCTGCTGACCACTCACTTCATGGACGAAGCTGACC...CAGGCTGCCAGGAATGAGCAGCAAAGTTGCAAATACCTTCATGAAGGGAAGATA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR TCA 90 bp CATTCCTGGCAGCCTGGAAGTCCTTGTTGCTGCTCAACCCTGTTGGCTTTCTTTCTCCGTATTTCTGCTTaGGAAATAGTGAAGACCCGC +
Preference number: 4 (lower is better)
Translates to: HSWQPGSPCCCSTLLAFFLRISA*EIVKTR
Trigger: GCGGGTCTTCACTATTTCTCAAGCAGAAATACGGAG...AAAGAAAGCCAACAGGGTTGAGCAGCAACAAGGACTTCCAGGCTGCCAGGAATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR TCA 90 bp TGTAAACATAGACAGGTCCCTGGGGTCTCTCTGGATAAGCACTGGAAAGAAGCTTGGTGGTGCACCAGCTaGGAGATTCCTTCAGGATTG +
Preference number: 4 (lower is better)
Translates to: CKHRQVPGVSLDKHWKEAWWCTS*EIPSGL
Trigger: CAATCCTGAAGGAATCTCTCAGCTGGTGCACCACCA...AGCTTCTTTCCAGTGCTTATCCAGAGAGACCCCAGGGACCTGTCTATGTTTACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR TCA 90 bp TGTAAACATAGACAGGTCCCTGGGGTCTCTCTGGATAAGCACTGGAAAGAAGCTATCTCAATGGAGGCCTaGGGGCCACACAATAGCTTG +
Preference number: 4 (lower is better)
Translates to: CKHRQVPGVSLDKHWKEAISMEA*GPHNSL
Trigger: CAAGCTATTGTGTGGCCCTCAGGCCTCCATTGAGAT...AGCTTCTTTCCAGTGCTTATCCAGAGAGACCCCAGGGACCTGTCTATGTTTACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
CDS-3UTR TCA 90 bp GTGTATCCTCAAGAGATGACACTACTCAGCCCTGTAGTGGTCCCTGACAATCCTTTTTTCCAGCTCCATTaGAACCCAACAGGCCGAAGC +
Preference number: 4 (lower is better)
Translates to: VYPQEMTLLSPVVVPDNPFFQLH*NPTGRS
Trigger: GCTTCGGCCTGTTGGGTTTCAATGGAGCTGGAAAAA...AGGATTGTCAGGGACCACTACAGGGCTGAGTAGTGTCATCTCTTGAGGATACAC
50% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR GCA 90 bp TGTAAACATAGACAGGTCCCTGGGGTCTCTCTGGATAAGCACTGGAAAGAAGCTGAAGCCACCCACGGCTaGTGCTATGTTGGCTTTACT +
Preference number: 4 (lower is better)
Translates to: CKHRQVPGVSLDKHWKEAEATHG*CYVGFT
Trigger: AGTAAAGCCAACATAGCAGCAGCCGTGGGTGGCTTC...AGCTTCTTTCCAGTGCTTATCCAGAGAGACCCCAGGGACCTGTCTATGTTTACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR GCA 90 bp TATCTTCCCTTCATGAAGGTATTTGCAACTTTGCTGCTCATTCCTGGCAGCCTGCGGTCACTCTTCTGCTaGTGGAGAAGGTCCCAGATG +
Preference number: 4 (lower is better)
Translates to: YLPFMKVFATLLLIPGSLRSLFC*WRRSQM
Trigger: CATCTGGGACCTTCTCCAGCAGCAGAAGAGTGACCG...CAGGCTGCCAGGAATGAGCAGCAAAGTTGCAAATACCTTCATGAAGGGAAGATA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CCA 90 bp AACTTTGCTGCTCATTCCTGGCAGCCTGGAAGTCCTTGTTGCTGCTCAACCCTGGTGGAAAAAGTGAAGTaGTATGCCAGCCTTCAGTCT +
Preference number: 4 (lower is better)
Translates to: NFAAHSWQPGSPCCCSTLVEKVK*YASLQS
Trigger: AGACTGAAGGCTGGCATACCACTTCACTTTTTCCAC...CAGGGTTGAGCAGCAACAAGGACTTCCAGGCTGCCAGGAATGAGCAGCAAAGTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CCA 90 bp CATTCCTGGCAGCCTGGAAGTCCTTGTTGCTGCTCAACCCTGTTGGCTTTCTTTAGAGGAAGCTGGTACTaGATGGCAATGAGGAATGGA +
Preference number: 4 (lower is better)
Translates to: HSWQPGSPCCCSTLLAFFRGSWY*MAMRNG
Trigger: TCCATTCCTCATTGCCATCCAGTACCAGCTTCCTCT...AAAGAAAGCCAACAGGGTTGAGCAGCAACAAGGACTTCCAGGCTGCCAGGAATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CCA 90 bp TCATATGTAAACATAGACAGGTCCCTGGGGTCTCTCTGGATAAGCACTGGAAAGGGGAGGGGTCGCTGTTaGAAAGGACTGCTATGTCCT +
Preference number: 4 (lower is better)
Translates to: SYVNIDRSLGSLWISTGKGRGRC*KGLLCP
Trigger: AGGACATAGCAGTCCTTTCCAACAGCGACCCCTCCC...CTTTCCAGTGCTTATCCAGAGAGACCCCAGGGACCTGTCTATGTTTACATATGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CCA 90 bp CATTCCTGGCAGCCTGGAAGTCCTTGTTGCTGCTCAACCCTGTTGGCTTTCTTTTCCTTATTGCCCACTTaGAACACCTTGGAGAGATGC +
Preference number: 4 (lower is better)
Translates to: HSWQPGSPCCCSTLLAFFSLLPT*NTLERC
Trigger: GCATCTCTCCAAGGTGTTCCAAGTGGGCAATAAGGA...AAAGAAAGCCAACAGGGTTGAGCAGCAACAAGGACTTCCAGGCTGCCAGGAATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CCA 90 bp TCATATGTAAACATAGACAGGTCCCTGGGGTCTCTCTGGATAAGCACTGGAAAGCTGTCAGCAGAGACATaGTCGTGGTCTTCCCAGCAC +
Preference number: 4 (lower is better)
Translates to: SYVNIDRSLGSLWISTGKLSAET*SWSSQH
Trigger: GTGCTGGGAAGACCACGACCATGTCTCTGCTGACAG...CTTTCCAGTGCTTATCCAGAGAGACCCCAGGGACCTGTCTATGTTTACATATGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CCA 90 bp TGTAAACATAGACAGGTCCCTGGGGTCTCTCTGGATAAGCACTGGAAAGAAGCTCCCCACTCAGGAACTTaGACCGTAAGTCACGCTTGT +
Preference number: 4 (lower is better)
Translates to: CKHRQVPGVSLDKHWKEAPHSGT*TVSHAC
Trigger: ACAAGCGTGACTTACGGTCCAAGTTCCTGAGTGGGG...AGCTTCTTTCCAGTGCTTATCCAGAGAGACCCCAGGGACCTGTCTATGTTTACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CCA 90 bp TATCTTCCCTTCATGAAGGTATTTGCAACTTTGCTGCTCATTCCTGGCAGCCTGGGAGAAGGTCCCAGATaGCCCTTCTGGACACTGCAT +
Preference number: 4 (lower is better)
Translates to: YLPFMKVFATLLLIPGSLGEGPR*PFWTLH
Trigger: ATGCAGTGTCCAGAAGGGCCATCTGGGACCTTCTCC...CAGGCTGCCAGGAATGAGCAGCAAAGTTGCAAATACCTTCATGAAGGGAAGATA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CCA 90 bp TCATATGTAAACATAGACAGGTCCCTGGGGTCTCTCTGGATAAGCACTGGAAAGGGAGAAGGTCCCAGATaGCCCTTCTGGACACTGCAT +
Preference number: 4 (lower is better)
Translates to: SYVNIDRSLGSLWISTGKGEGPR*PFWTLH
Trigger: ATGCAGTGTCCAGAAGGGCCATCTGGGACCTTCTCC...CTTTCCAGTGCTTATCCAGAGAGACCCCAGGGACCTGTCTATGTTTACATATGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CCA 90 bp TATCTTCCCTTCATGAAGGTATTTGCAACTTTGCTGCTCATTCCTGGCAGCCTGTCACTCTTCTGCTGCTaGAGAAGGTCCCAGATGGCC +
Preference number: 4 (lower is better)
Translates to: YLPFMKVFATLLLIPGSLSLFCC*RRSQMA
Trigger: GGCCATCTGGGACCTTCTCCAGCAGCAGAAGAGTGA...CAGGCTGCCAGGAATGAGCAGCAAAGTTGCAAATACCTTCATGAAGGGAAGATA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CCA 90 bp TATCTTCCCTTCATGAAGGTATTTGCAACTTTGCTGCTCATTCCTGGCAGCCTGTCTCCAGCATGGCATTaGGGACATGGTGGTGCACCA +
Preference number: 4 (lower is better)
Translates to: YLPFMKVFATLLLIPGSLSPAWH*GHGGAP
Trigger: TGGTGCACCACCATGTCCCCAATGCCATGCTGGAGA...CAGGCTGCCAGGAATGAGCAGCAAAGTTGCAAATACCTTCATGAAGGGAAGATA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CCA 90 bp TGTAAACATAGACAGGTCCCTGGGGTCTCTCTGGATAAGCACTGGAAAGAAGCTGCCTGGTATAAGCTGTaGACGCAGCCGAGAAGAAGA +
Preference number: 4 (lower is better)
Translates to: CKHRQVPGVSLDKHWKEAAWYKL*TQPRRR
Trigger: TCTTCTTCTCGGCTGCGTCCACAGCTTATACCAGGC...AGCTTCTTTCCAGTGCTTATCCAGAGAGACCCCAGGGACCTGTCTATGTTTACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CCA 90 bp ATCCCCCAGGCTAGCTGCAGTACCAGCTGGGACCAAGGCCTGTCTGTGTGCACACATGATCTAAGGTTCTaGAAAGTTCTTCTAACTTCA +
Preference number: 4 (lower is better)
Translates to: IPQASCSTSWDQGLSVCTHDLRF*KVLLTS
Trigger: TGAAGTTAGAAGAACTTTCCAGAACCTTAGATCATG...TGTGCACACAGACAGGCCTTGGTCCCAGCTGGTACTGCAGCTAGCCTGGGGGAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR TCA 90 bp TCATATGTAAACATAGACAGGTCCCTGGGGTCTCTCTGGATAAGCACTGGAAAGGGTCCTGGCTGTGGTTaGAGCTGTGCTCAAATACCA +
Preference number: 4 (lower is better)
Translates to: SYVNIDRSLGSLWISTGKGPGCG*SCAQIP
Trigger: TGGTATTTGAGCACAGCTTCAACCACAGCCAGGACC...CTTTCCAGTGCTTATCCAGAGAGACCCCAGGGACCTGTCTATGTTTACATATGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR TCA 90 bp CATTCCTGGCAGCCTGGAAGTCCTTGTTGCTGCTCAACCCTGTTGGCTTTCTTTTTCTTCGTGTGTAACTaGAGCGCAGGTGGTATTTCA +
Preference number: 4 (lower is better)
Translates to: HSWQPGSPCCCSTLLAFFFFVCN*SAGGIS
Trigger: TGAAATACCACCTGCGCTTCAGTTACACACGAAGAA...AAAGAAAGCCAACAGGGTTGAGCAGCAACAAGGACTTCCAGGCTGCCAGGAATG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR TCA 90 bp AACTTTGCTGCTCATTCCTGGCAGCCTGGAAGTCCTTGTTGCTGCTCAACCCTGAAAAAGTGGAAAAAGTaGAGTGGTATGCCAGCCTTC +
Preference number: 4 (lower is better)
Translates to: NFAAHSWQPGSPCCCSTLKKWKK*SGMPAF
Trigger: GAAGGCTGGCATACCACTTCACTTTTTCCACTTTTT...CAGGGTTGAGCAGCAACAAGGACTTCCAGGCTGCCAGGAATGAGCAGCAAAGTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR TCA 90 bp TGTAAACATAGACAGGTCCCTGGGGTCTCTCTGGATAAGCACTGGAAAGAAGCTAGTAGGGGGTATAGGTaGAGAAGTACAGGAAGCCAC +
Preference number: 4 (lower is better)
Translates to: CKHRQVPGVSLDKHWKEASRGYR*RSTGSH
Trigger: GTGGCTTCCTGTACTTCTTCACCTATACCCCCTACT...AGCTTCTTTCCAGTGCTTATCCAGAGAGACCCCAGGGACCTGTCTATGTTTACA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR TCA 90 bp CATACTGGAAGGAACATTGACATCCAAGGATGCCTGTGCAGTTGCATTGGGAGCCAGGACAAGAGCTTTTaGCTCAGTGTCATCCAGTTG +
Preference number: 4 (lower is better)
Translates to: HTGRNIDIQGCLCSCIGSQDKSF*LSVIQL
Trigger: CAACTGGATGACACTGAGTCAAAAGCTCTTGTCCTG...GCTCCCAATGCAACTGCACAGGCATCCTTGGATGTCAATGTTCCTTCCAGTATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR GCA 90 bp TGTAAACATAGACAGGTCCCTGGGGTCTCTCTGGATAAGCACTGGAAAGAAGCTCCTTCAGGATTGCAGTaGGGTTCTTTTACCAGCGTC +
Preference number: 4 (lower is better)
Translates to: CKHRQVPGVSLDKHWKEAPSGLQ*GSFTSV
Trigger: GACGCTGGTAAAAGAACCGCACTGCAATCCTGAAGG...AGCTTCTTTCCAGTGCTTATCCAGAGAGACCCCAGGGACCTGTCTATGTTTACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR GCA 90 bp TGTAAACATAGACAGGTCCCTGGGGTCTCTCTGGATAAGCACTGGAAAGAAGCTTGGCTTGAATGTCCATaGTGGTGTCCACCAGCTTAC +
Preference number: 4 (lower is better)
Translates to: CKHRQVPGVSLDKHWKEAWLECP*WCPPAY
Trigger: GTAAGCTGGTGGACACCAGCATGGACATTCAAGCCA...AGCTTCTTTCCAGTGCTTATCCAGAGAGACCCCAGGGACCTGTCTATGTTTACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
CDS-3UTR GCA 90 bp TCATATGTAAACATAGACAGGTCCCTGGGGTCTCTCTGGATAAGCACTGGAAAGTCCCTCGTGAAGGCGTaGACATTGAAGGCTTGGAAC +
Preference number: 4 (lower is better)
Translates to: SYVNIDRSLGSLWISTGKSLVKA*TLKAWN
Trigger: GTTCCAAGCCTTCAATGTGCACGCCTTCACGAGGGA...CTTTCCAGTGCTTATCCAGAGAGACCCCAGGGACCTGTCTATGTTTACATATGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR GCA 90 bp GAAGGTATTTGCAACTTTGCTGCTCATTCCTGGCAGCCTGGAAGTCCTTGTTGCTGGACCATGTCTTGGTaGTCATCTTCTAGGATGCTG +
Preference number: 4 (lower is better)
Translates to: EGICNFAAHSWQPGSPCCWTMSW*SSSRML
Trigger: CAGCATCCTAGAAGATGAGCACCAAGACATGGTCCA...GCAACAAGGACTTCCAGGCTGCCAGGAATGAGCAGCAAAGTTGCAAATACCTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CCA 90 bp TATCTTCCCTTCATGAAGGTATTTGCAACTTTGCTGCTCATTCCTGGCAGCCTGAGGGGGTCCTGGCTGTaGTTGAAGCTGTGCTCAAAT +
Preference number: 4 (lower is better)
Translates to: YLPFMKVFATLLLIPGSLRGSWL*LKLCSN
Trigger: ATTTGAGCACAGCTTCAACCACAGCCAGGACCCCCT...CAGGCTGCCAGGAATGAGCAGCAAAGTTGCAAATACCTTCATGAAGGGAAGATA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CCA 90 bp CATTCCTGGCAGCCTGGAAGTCCTTGTTGCTGCTCAACCCTGTTGGCTTTCTTTGTGGAAAAAGTGAAGTaGTATGCCAGCCTTCAGTCT +
Preference number: 4 (lower is better)
Translates to: HSWQPGSPCCCSTLLAFFVEKVK*YASLQS
Trigger: AGACTGAAGGCTGGCATACCACTTCACTTTTTCCAC...AAAGAAAGCCAACAGGGTTGAGCAGCAACAAGGACTTCCAGGCTGCCAGGAATG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CCA 90 bp TATCTTCCCTTCATGAAGGTATTTGCAACTTTGCTGCTCATTCCTGGCAGCCTGAGCAGCAGAGGAAGCTaGTACTGGATGGCAATGAGG +
Preference number: 4 (lower is better)
Translates to: YLPFMKVFATLLLIPGSLSSRGS*YWMAMR
Trigger: CCTCATTGCCATCCAGTACCAGCTTCCTCTGCTGCT...CAGGCTGCCAGGAATGAGCAGCAAAGTTGCAAATACCTTCATGAAGGGAAGATA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CCA 90 bp CATACTGGAAGGAACATTGACATCCAAGGATGCCTGTGCAGTTGCATTGGGAGCAATTTTCCTATGAGCTaGGCTCCCATTGCCATGGCA +
Preference number: 4 (lower is better)
Translates to: HTGRNIDIQGCLCSCIGSNFPMS*APIAMA
Trigger: TGCCATGGCAATGGGAGCCCAGCTCATAGGAAAATT...GCTCCCAATGCAACTGCACAGGCATCCTTGGATGTCAATGTTCCTTCCAGTATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CCA 90 bp GAAGGTATTTGCAACTTTGCTGCTCATTCCTGGCAGCCTGGAAGTCCTTGTTGCTCCTTATTGCCCACTTaGAACACCTTGGAGAGATGC +
Preference number: 4 (lower is better)
Translates to: EGICNFAAHSWQPGSPCCSLLPT*NTLERC
Trigger: GCATCTCTCCAAGGTGTTCCAAGTGGGCAATAAGGA...GCAACAAGGACTTCCAGGCTGCCAGGAATGAGCAGCAAAGTTGCAAATACCTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CCA 90 bp CATACTGGAAGGAACATTGACATCCAAGGATGCCTGTGCAGTTGCATTGGGAGCCTTGAATGTCCATGCTaGTGTCCACCAGCTTACCAA +
Preference number: 4 (lower is better)
Translates to: HTGRNIDIQGCLCSCIGSLECPC*CPPAYQ
Trigger: TTGGTAAGCTGGTGGACACCAGCATGGACATTCAAG...GCTCCCAATGCAACTGCACAGGCATCCTTGGATGTCAATGTTCCTTCCAGTATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
CDS-3UTR CCA 90 bp TATCTTCCCTTCATGAAGGTATTTGCAACTTTGCTGCTCATTCCTGGCAGCCTGCCTTCTTCAGGAACATaGCCCAGAACTGCTGGCAGT +
Preference number: 4 (lower is better)
Translates to: YLPFMKVFATLLLIPGSLPSSGT*PRTAGS
Trigger: ACTGCCAGCAGTTCTGGGCCATGTTCCTGAAGAAGG...CAGGCTGCCAGGAATGAGCAGCAAAGTTGCAAATACCTTCATGAAGGGAAGATA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
CDS-3UTR TCA 90 bp TGTAAACATAGACAGGTCCCTGGGGTCTCTCTGGATAAGCACTGGAAAGAAGCTTGTCCTTCTTCACTTTaGCACAGAACAGGAGGGTCA +
Preference number: 4 (lower is better)
Translates to: CKHRQVPGVSLDKHWKEACPSSL*HRTGGS
Trigger: TGACCCTCCTGTTCTGTGTCAAAGTGAAGAAGGACA...AGCTTCTTTCCAGTGCTTATCCAGAGAGACCCCAGGGACCTGTCTATGTTTACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR TCA 90 bp TATCTTCCCTTCATGAAGGTATTTGCAACTTTGCTGCTCATTCCTGGCAGCCTGCTTCGAATTTTCCTATaGGCTGGGCTCCCATTGCCA +
Preference number: 4 (lower is better)
Translates to: YLPFMKVFATLLLIPGSLLRIFL*AGLPLP
Trigger: TGGCAATGGGAGCCCAGCTCATAGGAAAATTCGAAG...CAGGCTGCCAGGAATGAGCAGCAAAGTTGCAAATACCTTCATGAAGGGAAGATA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR TCA 90 bp GAAGGTATTTGCAACTTTGCTGCTCATTCCTGGCAGCCTGGAAGTCCTTGTTGCAAACTCTTGCGGATCTaGGCCATGTCTTGGGAAATT +
Preference number: 4 (lower is better)
Translates to: EGICNFAAHSWQPGSPCCKLLRI*AMSWEI
Trigger: AATTTCCCAAGACATGGCTCAGATCCGCAAGAGTTT...GCAACAAGGACTTCCAGGCTGCCAGGAATGAGCAGCAAAGTTGCAAATACCTTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR TCA 90 bp TGTAAACATAGACAGGTCCCTGGGGTCTCTCTGGATAAGCACTGGAAAGAAGCTTGTGTAGCATCTGCTTaGCTTCCTCAGGACACTTCT +
Preference number: 4 (lower is better)
Translates to: CKHRQVPGVSLDKHWKEACVASA*LPQDTS
Trigger: AGAAGTGTCCTGAGGAAGTCAAGCAGATGCTACACA...AGCTTCTTTCCAGTGCTTATCCAGAGAGACCCCAGGGACCTGTCTATGTTTACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR TCA 90 bp TCATATGTAAACATAGACAGGTCCCTGGGGTCTCTCTGGATAAGCACTGGAAAGTCCCTGCCAGTCATGTaGTCAAGCAGTGCATCAAAC +
Preference number: 4 (lower is better)
Translates to: SYVNIDRSLGSLWISTGKSLPVM*SSSASN
Trigger: GTTTGATGCACTGCTTGATCACATGACTGGCAGGGA...CTTTCCAGTGCTTATCCAGAGAGACCCCAGGGACCTGTCTATGTTTACATATGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR GCA 90 bp TATCTTCCCTTCATGAAGGTATTTGCAACTTTGCTGCTCATTCCTGGCAGCCTGTTCCCGCCAGCTGTATaGAGCCTTCTTCAGGAACAT +
Preference number: 4 (lower is better)
Translates to: YLPFMKVFATLLLIPGSLFPPAV*SLLQEH
Trigger: ATGTTCCTGAAGAAGGCTGCATACAGCTGGCGGGAA...CAGGCTGCCAGGAATGAGCAGCAAAGTTGCAAATACCTTCATGAAGGGAAGATA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
CDS-3UTR CCA 90 bp GCTTCAAGTCTGGCCACAGCTCTCTCTTGTGCTGCCGATGCTCTGTGGGATGACCATGATCTAAGGTTCTaGAAAGTTCTTCTAACTTCA +
Preference number: 4 (lower is better)
Translates to: ASSLATALSCAADALWDDHDLRF*KVLLTS
Trigger: TGAAGTTAGAAGAACTTTCCAGAACCTTAGATCATG...GTCATCCCACAGAGCATCGGCAGCACAAGAGAGAGCTGTGGCCAGACTTGAAGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR TCA 90 bp TGTAAACATAGACAGGTCCCTGGGGTCTCTCTGGATAAGCACTGGAAAGAAGCTTTCTTCGTGTGTAACTaGAGCGCAGGTGGTATTTCA +
Preference number: 4 (lower is better)
Translates to: CKHRQVPGVSLDKHWKEAFFVCN*SAGGIS
Trigger: TGAAATACCACCTGCGCTTCAGTTACACACGAAGAA...AGCTTCTTTCCAGTGCTTATCCAGAGAGACCCCAGGGACCTGTCTATGTTTACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR TCA 90 bp AGAATCACAATATGTTTAAGTGTATCCTCAAGAGATGACACTACTCAGCCCTGTACACCGCTCACAAACTaGACGTGCTTGGCCTGGACG +
Preference number: 4 (lower is better)
Translates to: RITICLSVSSRDDTTQPCTPLTN*TCLAWT
Trigger: CGTCCAGGCCAAGCACGTTCAGTTTGTGAGCGGTGT...ACAGGGCTGAGTAGTGTCATCTCTTGAGGATACACTTAAACATATTGTGATTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR GCA 90 bp TCATATGTAAACATAGACAGGTCCCTGGGGTCTCTCTGGATAAGCACTGGAAAGAGACTTTCAAACCTGTaGGTGCTCTCCTTGGGAAGA +
Preference number: 4 (lower is better)
Translates to: SYVNIDRSLGSLWISTGKRLSNL*VLSLGR
Trigger: TCTTCCCAAGGAGAGCACGCACAGGTTTGAAAGTCT...CTTTCCAGTGCTTATCCAGAGAGACCCCAGGGACCTGTCTATGTTTACATATGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR GCA 90 bp AGAATCACAATATGTTTAAGTGTATCCTCAAGAGATGACACTACTCAGCCCTGTCTTGCCCGCCTCTCATaGTGGTACTGCAGAGCAGGA +
Preference number: 4 (lower is better)
Translates to: RITICLSVSSRDDTTQPCLARLS*WYCRAG
Trigger: TCCTGCTCTGCAGTACCAGCATGAGAGGCGGGCAAG...ACAGGGCTGAGTAGTGTCATCTCTTGAGGATACACTTAAACATATTGTGATTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
CDS-3UTR CCA 90 bp TCATATGTAAACATAGACAGGTCCCTGGGGTCTCTCTGGATAAGCACTGGAAAGAGAGGAAGCTGGTACTaGATGGCAATGAGGAATGGA +
Preference number: 4 (lower is better)
Translates to: SYVNIDRSLGSLWISTGKRGSWY*MAMRNG
Trigger: TCCATTCCTCATTGCCATCCAGTACCAGCTTCCTCT...CTTTCCAGTGCTTATCCAGAGAGACCCCAGGGACCTGTCTATGTTTACATATGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CCA 90 bp AGAATCACAATATGTTTAAGTGTATCCTCAAGAGATGACACTACTCAGCCCTGTCCCAGATGGCCCTTCTaGACACTGCATCCATGCCTG +
Preference number: 4 (lower is better)
Translates to: RITICLSVSSRDDTTQPCPRWPF*TLHPCL
Trigger: CAGGCATGGATGCAGTGTCCAGAAGGGCCATCTGGG...ACAGGGCTGAGTAGTGTCATCTCTTGAGGATACACTTAAACATATTGTGATTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
3UTR CAA 72 bp AGCCAGTATCTTCCCTTCATGAAGGTATTTGCAACTTaGCTGCTCATTCCTGGCAGCCTGGAAGTCCTTGTT +
Preference number: 4 (lower is better)
Translates to: SQYLPFMKVFAT*LLIPGSLEVLV
Trigger: AACAAGGACTTCCAGGCTGCCAGGAATGAGCAGCAAAGTTGCAAATACCTTCATGAAGGGAAGATACTGGCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR TCA 90 bp AGAATCACAATATGTTTAAGTGTATCCTCAAGAGATGACACTACTCAGCCCTGTTCTCATAGAAGTTGCTaGCCGCCATCCCCAGGCAGT +
Preference number: 4 (lower is better)
Translates to: RITICLSVSSRDDTTQPCSHRSC*PPSPGS
Trigger: ACTGCCTGGGGATGGCGGTCAGCAACTTCTATGAGA...ACAGGGCTGAGTAGTGTCATCTCTTGAGGATACACTTAAACATATTGTGATTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR GCA 90 bp AGAATCACAATATGTTTAAGTGTATCCTCAAGAGATGACACTACTCAGCCCTGTCCCCGAAGCTTGCGATaGCCAACTCCTTCTGCTTCT +
Preference number: 4 (lower is better)
Translates to: RITICLSVSSRDDTTQPCPRSLR*PTPSAS
Trigger: AGAAGCAGAAGGAGTTGGGCATCGCAAGCTTCGGGG...ACAGGGCTGAGTAGTGTCATCTCTTGAGGATACACTTAAACATATTGTGATTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CCA 90 bp AGAATCACAATATGTTTAAGTGTATCCTCAAGAGATGACACTACTCAGCCCTGTGGTCCGGGTAAACAGTaGCATTGGGCACATTCTCCG +
Preference number: 4 (lower is better)
Translates to: RITICLSVSSRDDTTQPCGPGKQ*HWAHSP
Trigger: CGGAGAATGTGCCCAATGCCACTGTTTACCCGGACC...ACAGGGCTGAGTAGTGTCATCTCTTGAGGATACACTTAAACATATTGTGATTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CCA 90 bp TCATATGTAAACATAGACAGGTCCCTGGGGTCTCTCTGGATAAGCACTGGAAAGGTGGAAAAAGTGAAGTaGTATGCCAGCCTTCAGTCT +
Preference number: 4 (lower is better)
Translates to: SYVNIDRSLGSLWISTGKVEKVK*YASLQS
Trigger: AGACTGAAGGCTGGCATACCACTTCACTTTTTCCAC...CTTTCCAGTGCTTATCCAGAGAGACCCCAGGGACCTGTCTATGTTTACATATGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CCA 90 bp TTCCTGGCAGCCTGGAAGTCCTTGTTGCTGCTCAACCCTGTTGGCTTTCTTTCCCATGATCTAAGGTTCTaGAAAGTTCTTCTAACTTCA +
Preference number: 4 (lower is better)
Translates to: FLAAWKSLLLLNPVGFLSHDLRF*KVLLTS
Trigger: TGAAGTTAGAAGAACTTTCCAGAACCTTAGATCATG...GGAAAGAAAGCCAACAGGGTTGAGCAGCAACAAGGACTTCCAGGCTGCCAGGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CCA 90 bp AGAATCACAATATGTTTAAGTGTATCCTCAAGAGATGACACTACTCAGCCCTGTAAACTTGCCCACGCCTaGGGTGCTCCAGGCATAGAA +
Preference number: 4 (lower is better)
Translates to: RITICLSVSSRDDTTQPCKLAHA*GAPGIE
Trigger: TTCTATGCCTGGAGCACCCCAGGCGTGGGCAAGTTT...ACAGGGCTGAGTAGTGTCATCTCTTGAGGATACACTTAAACATATTGTGATTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR TCA 90 bp TATCTTCCCTTCATGAAGGTATTTGCAACTTTGCTGCTCATTCCTGGCAGCCTGAAAAAGTGGAAAAAGTaGAGTGGTATGCCAGCCTTC +
Preference number: 4 (lower is better)
Translates to: YLPFMKVFATLLLIPGSLKKWKK*SGMPAF
Trigger: GAAGGCTGGCATACCACTTCACTTTTTCCACTTTTT...CAGGCTGCCAGGAATGAGCAGCAAAGTTGCAAATACCTTCATGAAGGGAAGATA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR GCA 90 bp AGAATCACAATATGTTTAAGTGTATCCTCAAGAGATGACACTACTCAGCCCTGTTCCTGCCTCTCAGCCTaGAGCATGTCCCTTAGATTC +
Preference number: 4 (lower is better)
Translates to: RITICLSVSSRDDTTQPCSCLSA*SMSLRF
Trigger: GAATCTAAGGGACATGCTGCAGGCTGAGAGGCAGGA...ACAGGGCTGAGTAGTGTCATCTCTTGAGGATACACTTAAACATATTGTGATTCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
CDS-3UTR GCA 90 bp AGAATCACAATATGTTTAAGTGTATCCTCAAGAGATGACACTACTCAGCCCTGTGCTCATCTTCTAGGATaGTGCCTGGGAAGGTCAGGT +
Preference number: 4 (lower is better)
Translates to: RITICLSVSSRDDTTQPCAHLLG*CLGRSG
Trigger: ACCTGACCTTCCCAGGCAGCATCCTAGAAGATGAGC...ACAGGGCTGAGTAGTGTCATCTCTTGAGGATACACTTAAACATATTGTGATTCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CCA 90 bp AGAATCACAATATGTTTAAGTGTATCCTCAAGAGATGACACTACTCAGCCCTGTCCTTCTTCAGGAACATaGCCCAGAACTGCTGGCAGT +
Preference number: 4 (lower is better)
Translates to: RITICLSVSSRDDTTQPCPSSGT*PRTAGS
Trigger: ACTGCCAGCAGTTCTGGGCCATGTTCCTGAAGAAGG...ACAGGGCTGAGTAGTGTCATCTCTTGAGGATACACTTAAACATATTGTGATTCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
CDS-3UTR CCA 90 bp AGAATCACAATATGTTTAAGTGTATCCTCAAGAGATGACACTACTCAGCCCTGTGCCTGGTATAAGCTGTaGACGCAGCCGAGAAGAAGA +
Preference number: 4 (lower is better)
Translates to: RITICLSVSSRDDTTQPCAWYKL*TQPRRR
Trigger: TCTTCTTCTCGGCTGCGTCCACAGCTTATACCAGGC...ACAGGGCTGAGTAGTGTCATCTCTTGAGGATACACTTAAACATATTGTGATTCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR TCA 90 bp AGAATCACAATATGTTTAAGTGTATCCTCAAGAGATGACACTACTCAGCCCTGTGCTCTCCTCTGTCTTTaGAGGATGTTGCTACTAGGC +
Preference number: 4 (lower is better)
Translates to: RITICLSVSSRDDTTQPCALLCL*RMLLLG
Trigger: GCCTAGTAGCAACATCCTTCAAAGACAGAGGAGAGC...ACAGGGCTGAGTAGTGTCATCTCTTGAGGATACACTTAAACATATTGTGATTCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
CDS-3UTR GCA 90 bp AGAATCACAATATGTTTAAGTGTATCCTCAAGAGATGACACTACTCAGCCCTGTCAAGCTCTGAGGAAGTaGAGTATCGCCGAGTCTCAT +
Preference number: 4 (lower is better)
Translates to: RITICLSVSSRDDTTQPCQALRK*SIAESH
Trigger: ATGAGACTCGGCGATACTGCACTTCCTCAGAGCTTG...ACAGGGCTGAGTAGTGTCATCTCTTGAGGATACACTTAAACATATTGTGATTCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CCA 90 bp AGAATCACAATATGTTTAAGTGTATCCTCAAGAGATGACACTACTCAGCCCTGTGGCACATTCTCCGACTaGATCTTCAAGCGAAGCCAA +
Preference number: 4 (lower is better)
Translates to: RITICLSVSSRDDTTQPCGTFSD*IFKRSQ
Trigger: TTGGCTTCGCTTGAAGATCCAGTCGGAGAATGTGCC...ACAGGGCTGAGTAGTGTCATCTCTTGAGGATACACTTAAACATATTGTGATTCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CCA 90 bp AGAATCACAATATGTTTAAGTGTATCCTCAAGAGATGACACTACTCAGCCCTGTAGCTACCAAGTCCTCTaGCTCGGCTTCAAAGTACTC +
Preference number: 4 (lower is better)
Translates to: RITICLSVSSRDDTTQPCSYQVL*LGFKVL
Trigger: GAGTACTTTGAAGCCGAGCCAGAGGACTTGGTAGCT...ACAGGGCTGAGTAGTGTCATCTCTTGAGGATACACTTAAACATATTGTGATTCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR TCA 90 bp AGAATCACAATATGTTTAAGTGTATCCTCAAGAGATGACACTACTCAGCCCTGTGGTACTGGATGGCAATaGGGAATGGATCTGAGATGT +
Preference number: 4 (lower is better)
Translates to: RITICLSVSSRDDTTQPCGTGWQ*GMDLRC
Trigger: ACATCTCAGATCCATTCCTCATTGCCATCCAGTACC...ACAGGGCTGAGTAGTGTCATCTCTTGAGGATACACTTAAACATATTGTGATTCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS TCA 90 bp GCAGGTGGTATTTCACCGCCAGCGGCAGGGGGTCCTGGCTGTGGTTaGAGCTGTGCTCAAATACCACAGCTGCCAGCACGCTGGAGGAGT +
Preference number: 5 (lower is better)
Translates to: AGGISPPAAGGPGCG*SCAQIPQLPARWRS
Trigger: ACTCCTCCAGCGTGCTGGCAGCTGTGGTATTTGAGCACAGCTTCAACCACAGCCAGGACCCCCTGCCGCTGGCGGTGAAATACCACCTGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CAA 90 bp ATCCCCCAGGCTAGCTGCAGTACCAGCTGGGACCAAGGCCTGTCTGTGTGCACAGTGATGACAATGGCTTaGCCAGACTCTCGGGCCCGG +
Preference number: 5 (lower is better)
Translates to: IPQASCSTSWDQGLSVCTVMTMA*PDSRAR
Trigger: CCGGGCCCGAGAGTCTGGCAAAGCCATTGTCATCAC...TGTGCACACAGACAGGCCTTGGTCCCAGCTGGTACTGCAGCTAGCCTGGGGGAT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS CCA 90 bp TTTCCAGCTCCATTGAAACCCAACAGGCCGAAGCACTCCCCTTTCTaGACCGCAAGGGAGATCCTGTCCACGGCAAGGAGCGGTGCTCGC +
Preference number: 5 (lower is better)
Translates to: FPAPLKPNRPKHSPF*TAREILSTARSGAR
Trigger: GCGAGCACCGCTCCTTGCCGTGGACAGGATCTCCCTTGCGGTCCAGAAAGGGGAGTGCTTCGGCCTGTTGGGTTTCAATGGAGCTGGAAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CAA 90 bp GGCCTGTCTGTGTGCACAGCAGGATGGGGTCTGGGACTGTGGTTCCAGAGACCTAGGGAGGGGTCGCTGTaGGAAAGGACTGCTATGTCC +
Preference number: 5 (lower is better)
Translates to: GLSVCTAGWGLGLWFQRPREGSL*ERTAMS
Trigger: GGACATAGCAGTCCTTTCCAACAGCGACCCCTCCCT...AGGTCTCTGGAACCACAGTCCCAGACCCCATCCTGCTGTGCACACAGACAGGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CAA 90 bp GCTCTGTGGGATGACATCTGGCTCAGGATCAGATCAGCCCGGTCCACTGTCCATCCAAAGCCCAGTCGCTaGCCCGCCTCTCATGCTGGT +
Preference number: 5 (lower is better)
Translates to: ALWDDIWLRIRSARSTVHPKPSR*PASHAG
Trigger: ACCAGCATGAGAGGCGGGCAAGCGACTGGGCTTTGG...ATGGACAGTGGACCGGGCTGATCTGATCCTGAGCCAGATGTCATCCCACAGAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
CDS-3UTR CAA 90 bp TCCCCCAGGCTAGCTGCAGTACCAGCTGGGACCAAGGCCTGTCTGTGTGCACAGAGTCGCCACAGCAGGTaGGTCTCAATGAGGAACAGC +
Preference number: 5 (lower is better)
Translates to: SPRLAAVPAGTKACLCAQSRHSR*VSMRNS
Trigger: GCTGTTCCTCATTGAGACCAACCTGCTGTGGCGACT...CTGTGCACACAGACAGGCCTTGGTCCCAGCTGGTACTGCAGCTAGCCTGGGGGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS TCA 90 bp TGCCTCTCAGCCTGCAGCATGTCCCTTAGATTCTCAGACAGCTGCTaGGCCAGCCTGGATGTGCCTGGGACCGAGAAGGGCACAACCGTT +
Preference number: 5 (lower is better)
Translates to: CLSACSMSLRFSDSC*ASLDVPGTEKGTTV
Trigger: AACGGTTGTGCCCTTCTCGGTCCCAGGCACATCCAGGCTGGCTCAGCAGCTGTCTGAGAATCTAAGGGACATGCTGCAGGCTGAGAGGCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
CDS-3UTR CAA 90 bp CTCTGTGGGATGACATCTGGCTCAGGATCAGATCAGCCCGGTCCACTGTCCATATCCACGTTGACAGGGTaGAGGAGGTCCCGCCACTGG +
Preference number: 5 (lower is better)
Translates to: LCGMTSGSGSDQPGPLSISTLTG*RRSRHW
Trigger: CCAGTGGCGGGACCTCCTCAACCCTGTCAACGTGGA...TATGGACAGTGGACCGGGCTGATCTGATCCTGAGCCAGATGTCATCCCACAGAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CAA 90 bp GCTTCAAGTCTGGCCACAGCTCTCTCTTGTGCTGCCGATGCTCTGTGGGATGACCTCTCCAGCATGGCATaGGGGACATGGTGGTGCACC +
Preference number: 5 (lower is better)
Translates to: ASSLATALSCAADALWDDLSSMA*GTWWCT
Trigger: GGTGCACCACCATGTCCCCAATGCCATGCTGGAGAG...GTCATCCCACAGAGCATCGGCAGCACAAGAGAGAGCTGTGGCCAGACTTGAAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CAA 90 bp CTCTGTGGGATGACATCTGGCTCAGGATCAGATCAGCCCGGTCCACTGTCCATACCAAAGCCCAGTCGCTaGCCCGCCTCTCATGCTGGT +
Preference number: 5 (lower is better)
Translates to: LCGMTSGSGSDQPGPLSIPKPSR*PASHAG
Trigger: ACCAGCATGAGAGGCGGGCAAGCGACTGGGCTTTGG...TATGGACAGTGGACCGGGCTGATCTGATCCTGAGCCAGATGTCATCCCACAGAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
CDS-3UTR CAA 90 bp ATCCCCCAGGCTAGCTGCAGTACCAGCTGGGACCAAGGCCTGTCTGTGTGCACAAGCTTGAACAGAAGGTaGTCCACGATGGCCAGGGCA +
Preference number: 5 (lower is better)
Translates to: IPQASCSTSWDQGLSVCTSLNRR*STMARA
Trigger: TGCCCTGGCCATCGTGGACAACCTTCTGTTCAAGCT...TGTGCACACAGACAGGCCTTGGTCCCAGCTGGTACTGCAGCTAGCCTGGGGGAT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
CDS TCA 90 bp AGAGCGGAGAACCAGAAAGTAGCCACATGGACACCGCTCACAAACTaGACGTGCTTGGCCTGGACGGCCCTCTCACTGACAGCCAGGATG +
Preference number: 5 (lower is better)
Translates to: RAENQKVATWTPLTN*TCLAWTALSLTARM
Trigger: CATCCTGGCTGTCAGTGAGAGGGCCGTCCAGGCCAAGCACGTTCAGTTTGTGAGCGGTGTCCATGTGGCTACTTTCTGGTTCTCCGCTCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CAA 90 bp ATCCCCCAGGCTAGCTGCAGTACCAGCTGGGACCAAGGCCTGTCTGTGTGCACAGGGAACGGGAACCTTTaGGTGATCACCATGAGCTTC +
Preference number: 5 (lower is better)
Translates to: IPQASCSTSWDQGLSVCTGNGNL*VITMSF
Trigger: GAAGCTCATGGTGATCACCAAAAGGTTCCCGTTCCC...TGTGCACACAGACAGGCCTTGGTCCCAGCTGGTACTGCAGCTAGCCTGGGGGAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CAA 90 bp AACTTTGCTGCTCATTCCTGGCAGCCTGGAAGTCCTTGTTGCTGCTCAACCCTGTCCACGTTGACAGGGTaGAGGAGGTCCCGCCACTGG +
Preference number: 5 (lower is better)
Translates to: NFAAHSWQPGSPCCCSTLSTLTG*RRSRHW
Trigger: CCAGTGGCGGGACCTCCTCAACCCTGTCAACGTGGA...CAGGGTTGAGCAGCAACAAGGACTTCCAGGCTGCCAGGAATGAGCAGCAAAGTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CAA 90 bp CTCTGTGGGATGACATCTGGCTCAGGATCAGATCAGCCCGGTCCACTGTCCATACTCTCCAGCATGGCATaGGGGACATGGTGGTGCACC +
Preference number: 5 (lower is better)
Translates to: LCGMTSGSGSDQPGPLSILSSMA*GTWWCT
Trigger: GGTGCACCACCATGTCCCCAATGCCATGCTGGAGAG...TATGGACAGTGGACCGGGCTGATCTGATCCTGAGCCAGATGTCATCCCACAGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CAA 90 bp ATCCCCCAGGCTAGCTGCAGTACCAGCTGGGACCAAGGCCTGTCTGTGTGCACACGCTGGTCATACACCTaGGAGAGCTCGTTGATGATC +
Preference number: 5 (lower is better)
Translates to: IPQASCSTSWDQGLSVCTRWSYT*ESSLMI
Trigger: GATCATCAACGAGCTCTCCAAGGTGTATGACCAGCG...TGTGCACACAGACAGGCCTTGGTCCCAGCTGGTACTGCAGCTAGCCTGGGGGAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CAA 90 bp GGTCTGGGACTGTGGTTCCAGAGACCTGACTTCAGGAGTGGAAACCTGCATGCTGTGATGACAATGGCTTaGCCAGACTCTCGGGCCCGG +
Preference number: 5 (lower is better)
Translates to: GLGLWFQRPDFRSGNLHAVMTMA*PDSRAR
Trigger: CCGGGCCCGAGAGTCTGGCAAAGCCATTGTCATCAC...AGCATGCAGGTTTCCACTCCTGAAGTCAGGTCTCTGGAACCACAGTCCCAGACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CAA 90 bp CTCTGTGGGATGACATCTGGCTCAGGATCAGATCAGCCCGGTCCACTGTCCATAGTGATGACAATGGCTTaGCCAGACTCTCGGGCCCGG +
Preference number: 5 (lower is better)
Translates to: LCGMTSGSGSDQPGPLSIVMTMA*PDSRAR
Trigger: CCGGGCCCGAGAGTCTGGCAAAGCCATTGTCATCAC...TATGGACAGTGGACCGGGCTGATCTGATCCTGAGCCAGATGTCATCCCACAGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS TCA 90 bp GGTAGTTGGAGATCTCAATGGAGGCCTGAGGGCCACACAATAGCTTaGACAGAAGGTTGTCCACGATGGCCAGGGCAGTGGCTGGGGAGT +
Preference number: 5 (lower is better)
Translates to: GSWRSQWRPEGHTIA*TEGCPRWPGQWLGS
Trigger: ACTCCCCAGCCACTGCCCTGGCCATCGTGGACAACCTTCTGTTCAAGCTATTGTGTGGCCCTCAGGCCTCCATTGAGATCTCCAACTACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
CDS GCA 90 bp AAAACCAGGAACTCCTCTAGGTCACCTAGCACTTCCCGGGGCTCCTaGCTCTCAGCCTGCAGCATGTCCCTTAGATTCTCAGACAGCTGC +
Preference number: 5 (lower is better)
Translates to: KTRNSSRSPSTSRGS*LSACSMSLRFSDSC
Trigger: GCAGCTGTCTGAGAATCTAAGGGACATGCTGCAGGCTGAGAGGCAGGAGCCCCGGGAAGTGCTAGGTGACCTAGAGGAGTTCCTGGTTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
CDS GCA 90 bp CCCCTGAGGCAGCCATGGAAGTCACAAACTTGCCCACGCCTGGGGTaGTCCAGGCATAGAAGCTCTCCTGGTACTGGATGTTGTACTTCT +
Preference number: 5 (lower is better)
Translates to: PLRQPWKSQTCPRLG*SRHRSSPGTGCCTS
Trigger: AGAAGTACAACATCCAGTACCAGGAGAGCTTCTATGCCTGGAGCACCCCAGGCGTGGGCAAGTTTGTGACTTCCATGGCTGCCTCAGGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS CCA 90 bp CGCTTGCCCGCCTCTCATGCTGGTACTGCAGAGCAGGAAGCTGAATaGCTTGAATGTCCATGCTGGTGTCCACCAGCTTACCAACCCGAA +
Preference number: 5 (lower is better)
Translates to: RLPASHAGTAEQEAE*LECPCWCPPAYQPE
Trigger: TTCGGGTTGGTAAGCTGGTGGACACCAGCATGGACATTCAAGCCATTCAGCTTCCTGCTCTGCAGTACCAGCATGAGAGGCGGGCAAGCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
CDS-3UTR CAA 90 bp TCCCCCAGGCTAGCTGCAGTACCAGCTGGGACCAAGGCCTGTCTGTGTGCACAGATGTCCTTCTTCACTTaGACACAGAACAGGAGGGTC +
Preference number: 5 (lower is better)
Translates to: SPRLAAVPAGTKACLCAQMSFFT*TQNRRV
Trigger: GACCCTCCTGTTCTGTGTCAAAGTGAAGAAGGACAT...CTGTGCACACAGACAGGCCTTGGTCCCAGCTGGTACTGCAGCTAGCCTGGGGGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CAA 90 bp GGCCTGTCTGTGTGCACAGCAGGATGGGGTCTGGGACTGTGGTTCCAGAGACCTCAGCATCCCCAGCACTaGTCCAAAGCAGAAATTGTC +
Preference number: 5 (lower is better)
Translates to: GLSVCTAGWGLGLWFQRPQHPQH*SKAEIV
Trigger: GACAATTTCTGCTTTGGACAAGTGCTGGGGATGCTG...AGGTCTCTGGAACCACAGTCCCAGACCCCATCCTGCTGTGCACACAGACAGGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CAA 90 bp ATCCCCCAGGCTAGCTGCAGTACCAGCTGGGACCAAGGCCTGTCTGTGTGCACACCCATCTTGTCCTTATaGCCCACTTGGAACACCTTG +
Preference number: 5 (lower is better)
Translates to: IPQASCSTSWDQGLSVCTPILSL*PTWNTL
Trigger: CAAGGTGTTCCAAGTGGGCAATAAGGACAAGATGGG...TGTGCACACAGACAGGCCTTGGTCCCAGCTGGTACTGCAGCTAGCCTGGGGGAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CAA 90 bp TCCCCCAGGCTAGCTGCAGTACCAGCTGGGACCAAGGCCTGTCTGTGTGCACAGATGTGTAGCATCTGCTaGACTTCCTCAGGACACTTC +
Preference number: 5 (lower is better)
Translates to: SPRLAAVPAGTKACLCAQMCSIC*TSSGHF
Trigger: GAAGTGTCCTGAGGAAGTCAAGCAGATGCTACACAT...CTGTGCACACAGACAGGCCTTGGTCCCAGCTGGTACTGCAGCTAGCCTGGGGGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CAA 90 bp AGGTCCCTGGGGTCTCTCTGGATAAGCACTGGAAAGAAGCTCAATCCCCCAGGCGAGTGGTATGCCTGGTaGTTGAACAGGGCAGTGACC +
Preference number: 5 (lower is better)
Translates to: RSLGSLWISTGKKLNPPGEWYAW*LNRAVT
Trigger: GGTCACTGCCCTGTTCAACAACCAGGCATACCACTC...GCCTGGGGGATTGAGCTTCTTTCCAGTGCTTATCCAGAGAGACCCCAGGGACCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
CDS-3UTR CAA 90 bp GGCCTGTCTGTGTGCACAGCAGGATGGGGTCTGGGACTGTGGTTCCAGAGACCTATGCCCGACAGGATGTaGAATATGGTCAGCCTGGTA +
Preference number: 5 (lower is better)
Translates to: GLSVCTAGWGLGLWFQRPMPDRM*NMVSLV
Trigger: TACCAGGCTGACCATATTCAACATCCTGTCGGGCAT...AGGTCTCTGGAACCACAGTCCCAGACCCCATCCTGCTGTGCACACAGACAGGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CAA 90 bp GCTCTGTGGGATGACATCTGGCTCAGGATCAGATCAGCCCGGTCCACTGTCCATTCCCCAGGCAGTGGTTaGGCAGCACCAAGAACACAT +
Preference number: 5 (lower is better)
Translates to: ALWDDIWLRIRSARSTVHSPGSG*AAPRTH
Trigger: ATGTGTTCTTGGTGCTGCCAAACCACTGCCTGGGGA...ATGGACAGTGGACCGGGCTGATCTGATCCTGAGCCAGATGTCATCCCACAGAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CAA 90 bp ATCCCCCAGGCTAGCTGCAGTACCAGCTGGGACCAAGGCCTGTCTGTGTGCACAGTTTTTCCAGCTCCATaGAAACCCAACAGGCCGAAG +
Preference number: 5 (lower is better)
Translates to: IPQASCSTSWDQGLSVCTVFPAP*KPNRPK
Trigger: CTTCGGCCTGTTGGGTTTCAATGGAGCTGGAAAAAC...TGTGCACACAGACAGGCCTTGGTCCCAGCTGGTACTGCAGCTAGCCTGGGGGAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS TCA 90 bp GCATGGCTCTCCAGCATGGCATTGGGGACATGGTGGTGCACCAGCTaGGAGATTCCTTCAGGATTGCAGTGCGGTTCTTTTACCAGCGTC +
Preference number: 5 (lower is better)
Translates to: AWLSSMALGTWWCTS*EIPSGLQCGSFTSV
Trigger: GACGCTGGTAAAAGAACCGCACTGCAATCCTGAAGGAATCTCTCAGCTGGTGCACCACCATGTCCCCAATGCCATGCTGGAGAGCCATGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS CCA 90 bp ACAGGGGCAGCTCCTGGATGGACTGGTCCGGGTAAACAGTGGCATTaGGCACATTCTCCGACTGGATCTTCAAGCGAAGCCAAATCAGGA +
Preference number: 5 (lower is better)
Translates to: TGAAPGWTGPGKQWH*AHSPTGSSSEAKSG
Trigger: TCCTGATTTGGCTTCGCTTGAAGATCCAGTCGGAGAATGTGCCCAATGCCACTGTTTACCCGGACCAGTCCATCCAGGAGCTGCCCCTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CAA 90 bp GGAACAGAGGATGTGCTTCAAGTCTGGCCACAGCTCTCTCTTGTGCTGCCGATGGGGTCCTGGCTGTGGTaGAAGCTGTGCTCAAATACC +
Preference number: 5 (lower is better)
Translates to: GTEDVLQVWPQLSLVLPMGSWLW*KLCSNT
Trigger: GGTATTTGAGCACAGCTTCAACCACAGCCAGGACCC...CATCGGCAGCACAAGAGAGAGCTGTGGCCAGACTTGAAGCACATCCTCTGTTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CAA 90 bp TTCCTGGCAGCCTGGAAGTCCTTGTTGCTGCTCAACCCTGTTGGCTTTCTTTCCAGGGAGGGGTCGCTGTaGGAAAGGACTGCTATGTCC +
Preference number: 5 (lower is better)
Translates to: FLAAWKSLLLLNPVGFLSREGSL*ERTAMS
Trigger: GGACATAGCAGTCCTTTCCAACAGCGACCCCTCCCT...GGAAAGAAAGCCAACAGGGTTGAGCAGCAACAAGGACTTCCAGGCTGCCAGGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CAA 90 bp CATACTGGAAGGAACATTGACATCCAAGGATGCCTGTGCAGTTGCATTGGGAGCTCCACGTTGACAGGGTaGAGGAGGTCCCGCCACTGG +
Preference number: 5 (lower is better)
Translates to: HTGRNIDIQGCLCSCIGSSTLTG*RRSRHW
Trigger: CCAGTGGCGGGACCTCCTCAACCCTGTCAACGTGGA...GCTCCCAATGCAACTGCACAGGCATCCTTGGATGTCAATGTTCCTTCCAGTATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CAA 90 bp GGGGTCTGGGACTGTGGTTCCAGAGACCTGACTTCAGGAGTGGAAACCTGCATGAAATTGTCGTCCACGTaGACAGGGTTGAGGAGGTCC +
Preference number: 5 (lower is better)
Translates to: GVWDCGSRDLTSGVETCMKLSST*TGLRRS
Trigger: GGACCTCCTCAACCCTGTCAACGTGGACGACAATTT...CATGCAGGTTTCCACTCCTGAAGTCAGGTCTCTGGAACCACAGTCCCAGACCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CAA 90 bp GCTTCAAGTCTGGCCACAGCTCTCTCTTGTGCTGCCGATGCTCTGTGGGATGACAAATTGTCGTCCACGTaGACAGGGTTGAGGAGGTCC +
Preference number: 5 (lower is better)
Translates to: ASSLATALSCAADALWDDKLSST*TGLRRS
Trigger: GGACCTCCTCAACCCTGTCAACGTGGACGACAATTT...GTCATCCCACAGAGCATCGGCAGCACAAGAGAGAGCTGTGGCCAGACTTGAAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CAA 90 bp ATCCCCCAGGCTAGCTGCAGTACCAGCTGGGACCAAGGCCTGTCTGTGTGCACAATGTGTAGCATCTGCTaGACTTCCTCAGGACACTTC +
Preference number: 5 (lower is better)
Translates to: IPQASCSTSWDQGLSVCTMCSIC*TSSGHF
Trigger: GAAGTGTCCTGAGGAAGTCAAGCAGATGCTACACAT...TGTGCACACAGACAGGCCTTGGTCCCAGCTGGTACTGCAGCTAGCCTGGGGGAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CAA 90 bp CTCTGTGGGATGACATCTGGCTCAGGATCAGATCAGCCCGGTCCACTGTCCATAAGTCGCCACAGCAGGTaGGTCTCAATGAGGAACAGC +
Preference number: 5 (lower is better)
Translates to: LCGMTSGSGSDQPGPLSISRHSR*VSMRNS
Trigger: GCTGTTCCTCATTGAGACCAACCTGCTGTGGCGACT...TATGGACAGTGGACCGGGCTGATCTGATCCTGAGCCAGATGTCATCCCACAGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CAA 90 bp GCTTCAAGTCTGGCCACAGCTCTCTCTTGTGCTGCCGATGCTCTGTGGGATGACCGCTGGTCATACACCTaGGAGAGCTCGTTGATGATC +
Preference number: 5 (lower is better)
Translates to: ASSLATALSCAADALWDDRWSYT*ESSLMI
Trigger: GATCATCAACGAGCTCTCCAAGGTGTATGACCAGCG...GTCATCCCACAGAGCATCGGCAGCACAAGAGAGAGCTGTGGCCAGACTTGAAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS TCA 90 bp TTCCAGCTACCAAGTCCTCTGGCTCGGCTTCAAAGTACTCGTTCCTaGGAGCTTTCTCTGGGTCGCTGCCTTCCTCTTCCTTCCCTACGA +
Preference number: 5 (lower is better)
Translates to: FQLPSPLARLQSTRS*ELSLGRCLPLPSLR
Trigger: TCGTAGGGAAGGAAGAGGAAGGCAGCGACCCAGAGAAAGCTCTCAGGAACGAGTACTTTGAAGCCGAGCCAGAGGACTTGGTAGCTGGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS GCA 90 bp CATTGGGGACATGGTGGTGCACCAGCTGAGAGATTCCTTCAGGATTaGAGTGCGGTTCTTTTACCAGCGTCATGTGGTAGCCAGCTCCGT +
Preference number: 5 (lower is better)
Translates to: HWGHGGAPAERFLQD*SAVLLPASCGSQLR
Trigger: ACGGAGCTGGCTACCACATGACGCTGGTAAAAGAACCGCACTGCAATCCTGAAGGAATCTCTCAGCTGGTGCACCACCATGTCCCCAATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS GCA 90 bp GGCCCTCTCACTGACAGCCAGGATGGAAAAGGTGCTGGCCAGAAATaGCATGGCGATGAGCAAATTGAGGGCAATGTCAAATCCCTTCCG +
Preference number: 5 (lower is better)
Translates to: GPLTDSQDGKGAGQK*HGDEQIEGNVKSLP
Trigger: CGGAAGGGATTTGACATTGCCCTCAATTTGCTCATCGCCATGGCATTTCTGGCCAGCACCTTTTCCATCCTGGCTGTCAGTGAGAGGGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS CCA 90 bp CAGAAATTGTCGTCCACGTTGACAGGGTTGAGGAGGTCCCGCCACTaGATGCCAGTGCCTTTGGCTTCGAATTTTCCTATGAGCTGGGCT +
Preference number: 5 (lower is better)
Translates to: QKLSSTLTGLRRSRH*MPVPLASNFPMSWA
Trigger: AGCCCAGCTCATAGGAAAATTCGAAGCCAAAGGCACTGGCATCCAGTGGCGGGACCTCCTCAACCCTGTCAACGTGGACGACAATTTCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS CCA 90 bp GCTGGTACTGCAGAGCAGGAAGCTGAATGGCTTGAATGTCCATGCTaGTGTCCACCAGCTTACCAACCCGAAGGAAGACTTCCTCCATGG +
Preference number: 5 (lower is better)
Translates to: AGTAEQEAEWLECPC*CPPAYQPEGRLPPW
Trigger: CCATGGAGGAAGTCTTCCTTCGGGTTGGTAAGCTGGTGGACACCAGCATGGACATTCAAGCCATTCAGCTTCCTGCTCTGCAGTACCAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
CDS-3UTR CAA 90 bp GGCCTGTCTGTGTGCACAGCAGGATGGGGTCTGGGACTGTGGTTCCAGAGACCTCCGTGCACTCTCATCTaGATCATGAATTCCCTTTTC +
Preference number: 5 (lower is better)
Translates to: GLSVCTAGWGLGLWFQRPPCTLI*IMNSLF
Trigger: GAAAAGGGAATTCATGATCAAGATGAGAGTGCACGG...AGGTCTCTGGAACCACAGTCCCAGACCCCATCCTGCTGTGCACACAGACAGGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CAA 90 bp GCTTCAAGTCTGGCCACAGCTCTCTCTTGTGCTGCCGATGCTCTGTGGGATGACACGGCTGCTGCTATGTaGGCTTTACTGAAGAAGGTG +
Preference number: 5 (lower is better)
Translates to: ASSLATALSCAADALWDDTAAAM*ALLKKV
Trigger: CACCTTCTTCAGTAAAGCCAACATAGCAGCAGCCGT...GTCATCCCACAGAGCATCGGCAGCACAAGAGAGAGCTGTGGCCAGACTTGAAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CAA 90 bp GCTTCAAGTCTGGCCACAGCTCTCTCTTGTGCTGCCGATGCTCTGTGGGATGACCAGCATCCCCAGCACTaGTCCAAAGCAGAAATTGTC +
Preference number: 5 (lower is better)
Translates to: ASSLATALSCAADALWDDQHPQH*SKAEIV
Trigger: GACAATTTCTGCTTTGGACAAGTGCTGGGGATGCTG...GTCATCCCACAGAGCATCGGCAGCACAAGAGAGAGCTGTGGCCAGACTTGAAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CAA 90 bp GCTCTGTGGGATGACATCTGGCTCAGGATCAGATCAGCCCGGTCCACTGTCCATAGCCCTGTGTTGAGCTaGACCAAAACTTCCTCTTCC +
Preference number: 5 (lower is better)
Translates to: ALWDDIWLRIRSARSTVHSPVLS*TKTSSS
Trigger: GGAAGAGGAAGTTTTGGTCAAGCTCAACACAGGGCT...ATGGACAGTGGACCGGGCTGATCTGATCCTGAGCCAGATGTCATCCCACAGAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
CDS-3UTR CAA 90 bp TGGGATGACATCTGGCTCAGGATCAGATCAGCCCGGTCCACTGTCCATACTGGAAGGGCAAGCCCTGTGTaGAGCTTGACCAAAACTTCC +
Preference number: 5 (lower is better)
Translates to: WDDIWLRIRSARSTVHTGRASPV*SLTKTS
Trigger: GGAAGTTTTGGTCAAGCTCAACACAGGGCTTGCCCT...TCCAGTATGGACAGTGGACCGGGCTGATCTGATCCTGAGCCAGATGTCATCCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
CDS-3UTR CAA 90 bp AACTTTGCTGCTCATTCCTGGCAGCCTGGAAGTCCTTGTTGCTGCTCAACCCTGAGCTTGAACAGAAGGTaGTCCACGATGGCCAGGGCA +
Preference number: 5 (lower is better)
Translates to: NFAAHSWQPGSPCCCSTLSLNRR*STMARA
Trigger: TGCCCTGGCCATCGTGGACAACCTTCTGTTCAAGCT...CAGGGTTGAGCAGCAACAAGGACTTCCAGGCTGCCAGGAATGAGCAGCAAAGTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
CDS-3UTR CAA 90 bp AGGTCCCTGGGGTCTCTCTGGATAAGCACTGGAAAGAAGCTCAATCCCCCAGGCATGCCCGACAGGATGTaGAATATGGTCAGCCTGGTA +
Preference number: 5 (lower is better)
Translates to: RSLGSLWISTGKKLNPPGMPDRM*NMVSLV
Trigger: TACCAGGCTGACCATATTCAACATCCTGTCGGGCAT...GCCTGGGGGATTGAGCTTCTTTCCAGTGCTTATCCAGAGAGACCCCAGGGACCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CAA 90 bp TTCCTGGCAGCCTGGAAGTCCTTGTTGCTGCTCAACCCTGTTGGCTTTCTTTCCTCCCCAGGCAGTGGTTaGGCAGCACCAAGAACACAT +
Preference number: 5 (lower is better)
Translates to: FLAAWKSLLLLNPVGFLSSPGSG*AAPRTH
Trigger: ATGTGTTCTTGGTGCTGCCAAACCACTGCCTGGGGA...GGAAAGAAAGCCAACAGGGTTGAGCAGCAACAAGGACTTCCAGGCTGCCAGGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CAA 90 bp TGGGATGACATCTGGCTCAGGATCAGATCAGCCCGGTCCACTGTCCATACTGGAACCTTGGAGAGCTCGTaGATGATCAGTGGTGTGTCG +
Preference number: 5 (lower is better)
Translates to: WDDIWLRIRSARSTVHTGTLESS*MISGVS
Trigger: CGACACACCACTGATCATCAACGAGCTCTCCAAGGT...TCCAGTATGGACAGTGGACCGGGCTGATCTGATCCTGAGCCAGATGTCATCCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CAA 90 bp GGAACAGAGGATGTGCTTCAAGTCTGGCCACAGCTCTCTCTTGTGCTGCCGATGCGCTGGTCATACACCTaGGAGAGCTCGTTGATGATC +
Preference number: 5 (lower is better)
Translates to: GTEDVLQVWPQLSLVLPMRWSYT*ESSLMI
Trigger: GATCATCAACGAGCTCTCCAAGGTGTATGACCAGCG...CATCGGCAGCACAAGAGAGAGCTGTGGCCAGACTTGAAGCACATCCTCTGTTCC
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CAA 90 bp GGAACAGAGGATGTGCTTCAAGTCTGGCCACAGCTCTCTCTTGTGCTGCCGATGAGGATACCAAATACCTaGGCCCAGCTGAGGTCACAG +
Preference number: 5 (lower is better)
Translates to: GTEDVLQVWPQLSLVLPMRIPNT*AQLRSQ
Trigger: CTGTGACCTCAGCTGGGCCAAGGTATTTGGTATCCT...CATCGGCAGCACAAGAGAGAGCTGTGGCCAGACTTGAAGCACATCCTCTGTTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS TCA 90 bp GTTCTTTTACCAGCGTCATGTGGTAGCCAGCTCCGTATTTCTGCTTaGGAAATAGTGAAGACCCGCAGCACTGGAGCTCCCCCTTGGCCA +
Preference number: 5 (lower is better)
Translates to: VLLPASCGSQLRISA*EIVKTRSTGAPPWP
Trigger: TGGCCAAGGGGGAGCTCCAGTGCTGCGGGTCTTCACTATTTCTCAAGCAGAAATACGGAGCTGGCTACCACATGACGCTGGTAAAAGAAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS GCA 90 bp CATGCTGGTACTGCAGAGCAGGAAGCTGAATGGCTTGAATGTCCATaGTGGTGTCCACCAGCTTACCAACCCGAAGGAAGACTTCCTCCA +
Preference number: 5 (lower is better)
Translates to: HAGTAEQEAEWLECP*WCPPAYQPEGRLPP
Trigger: TGGAGGAAGTCTTCCTTCGGGTTGGTAAGCTGGTGGACACCAGCATGGACATTCAAGCCATTCAGCTTCCTGCTCTGCAGTACCAGCATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
CDS GCA 90 bp TGCTCCAGGCATAGAAGCTCTCCTGGTACTGGATGTTGTACTTCTTaGAGTAGTGGGCAGCAAGCTCTGAGGAAGTGCAGTATCGCCGAG +
Preference number: 5 (lower is better)
Translates to: CSRHRSSPGTGCCTS*SSGQQALRKCSIAE
Trigger: CTCGGCGATACTGCACTTCCTCAGAGCTTGCTGCCCACTACTGCAAGAAGTACAACATCCAGTACCAGGAGAGCTTCTATGCCTGGAGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CAA 90 bp TTCCTGGCAGCCTGGAAGTCCTTGTTGCTGCTCAACCCTGTTGGCTTTCTTTCCGGGAACGGGAACCTTTaGGTGATCACCATGAGCTTC +
Preference number: 5 (lower is better)
Translates to: FLAAWKSLLLLNPVGFLSGNGNL*VITMSF
Trigger: GAAGCTCATGGTGATCACCAAAAGGTTCCCGTTCCC...GGAAAGAAAGCCAACAGGGTTGAGCAGCAACAAGGACTTCCAGGCTGCCAGGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CAA 90 bp GCTTCAAGTCTGGCCACAGCTCTCTCTTGTGCTGCCGATGCTCTGTGGGATGACATGTCCTTCTTCACTTaGACACAGAACAGGAGGGTC +
Preference number: 5 (lower is better)
Translates to: ASSLATALSCAADALWDDMSFFT*TQNRRV
Trigger: GACCCTCCTGTTCTGTGTCAAAGTGAAGAAGGACAT...GTCATCCCACAGAGCATCGGCAGCACAAGAGAGAGCTGTGGCCAGACTTGAAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CAA 90 bp AGGTCCCTGGGGTCTCTCTGGATAAGCACTGGAAAGAAGCTCAATCCCCCAGGCATGTCCTTCTTCACTTaGACACAGAACAGGAGGGTC +
Preference number: 5 (lower is better)
Translates to: RSLGSLWISTGKKLNPPGMSFFT*TQNRRV
Trigger: GACCCTCCTGTTCTGTGTCAAAGTGAAGAAGGACAT...GCCTGGGGGATTGAGCTTCTTTCCAGTGCTTATCCAGAGAGACCCCAGGGACCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CAA 90 bp GGGGTCTGGGACTGTGGTTCCAGAGACCTGACTTCAGGAGTGGAAACCTGCATGGAGAGATGCTTGATCTaGATTCCAGCTACCAAGTCC +
Preference number: 5 (lower is better)
Translates to: GVWDCGSRDLTSGVETCMERCLI*IPATKS
Trigger: GGACTTGGTAGCTGGAATCAAGATCAAGCATCTCTC...CATGCAGGTTTCCACTCCTGAAGTCAGGTCTCTGGAACCACAGTCCCAGACCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CAA 90 bp GCTTCAAGTCTGGCCACAGCTCTCTCTTGTGCTGCCGATGCTCTGTGGGATGACTCGGCAACTGTCAGGTaGTCAAACAGTACATCATGC +
Preference number: 5 (lower is better)
Translates to: ASSLATALSCAADALWDDSATVR*SNSTSC
Trigger: GCATGATGTACTGTTTGACAACCTGACAGTTGCCGA...GTCATCCCACAGAGCATCGGCAGCACAAGAGAGAGCTGTGGCCAGACTTGAAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CAA 90 bp GGAACAGAGGATGTGCTTCAAGTCTGGCCACAGCTCTCTCTTGTGCTGCCGATGAGGAAGCTGAATGGCTaGAATGTCCATGCTGGTGTC +
Preference number: 5 (lower is better)
Translates to: GTEDVLQVWPQLSLVLPMRKLNG*NVHAGV
Trigger: GACACCAGCATGGACATTCAAGCCATTCAGCTTCCT...CATCGGCAGCACAAGAGAGAGCTGTGGCCAGACTTGAAGCACATCCTCTGTTCC
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
CDS-3UTR CAA 90 bp TTCCTGGCAGCCTGGAAGTCCTTGTTGCTGCTCAACCCTGTTGGCTTTCTTTCCACCTTGGAGAGCTCGTaGATGATCAGTGGTGTGTCG +
Preference number: 5 (lower is better)
Translates to: FLAAWKSLLLLNPVGFLSTLESS*MISGVS
Trigger: CGACACACCACTGATCATCAACGAGCTCTCCAAGGT...GGAAAGAAAGCCAACAGGGTTGAGCAGCAACAAGGACTTCCAGGCTGCCAGGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS TCA 90 bp TCATCCAGTTGTACCGAGGAGCCACGAAAAAGTAGGGGGTATAGGTaGAGAAGTACAGGAAGCCACCCACGGCTGCTGCTATGTTGGCTT +
Preference number: 5 (lower is better)
Translates to: SSSCTEEPRKSRGYR*RSTGSHPRLLLCWL
Trigger: AAGCCAACATAGCAGCAGCCGTGGGTGGCTTCCTGTACTTCTTCACCTATACCCCCTACTTTTTCGTGGCTCCTCGGTACAACTGGATGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS CCA 90 bp CGCCACTGGATGCCAGTGCCTTTGGCTTCGAATTTTCCTATGAGCTaGGCTCCCATTGCCATGGCAACATTAGATAGGAGACAGGACAAG +
Preference number: 5 (lower is better)
Translates to: RHWMPVPLASNFPMS*APIAMATLDRRQDK
Trigger: CTTGTCCTGTCTCCTATCTAATGTTGCCATGGCAATGGGAGCCCAGCTCATAGGAAAATTCGAAGCCAAAGGCACTGGCATCCAGTGGCG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CAA 90 bp GCTTCAAGTCTGGCCACAGCTCTCTCTTGTGCTGCCGATGCTCTGTGGGATGACCCGTGCACTCTCATCTaGATCATGAATTCCCTTTTC +
Preference number: 5 (lower is better)
Translates to: ASSLATALSCAADALWDDPCTLI*IMNSLF
Trigger: GAAAAGGGAATTCATGATCAAGATGAGAGTGCACGG...GTCATCCCACAGAGCATCGGCAGCACAAGAGAGAGCTGTGGCCAGACTTGAAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CAA 90 bp CATACTGGAAGGAACATTGACATCCAAGGATGCCTGTGCAGTTGCATTGGGAGCGGGTCCTGGCTGTGGTaGAAGCTGTGCTCAAATACC +
Preference number: 5 (lower is better)
Translates to: HTGRNIDIQGCLCSCIGSGSWLW*KLCSNT
Trigger: GGTATTTGAGCACAGCTTCAACCACAGCCAGGACCC...GCTCCCAATGCAACTGCACAGGCATCCTTGGATGTCAATGTTCCTTCCAGTATG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CAA 90 bp TGTAAACATAGACAGGTCCCTGGGGTCTCTCTGGATAAGCACTGGAAAGAAGCTAGGGAGGGGTCGCTGTaGGAAAGGACTGCTATGTCC +
Preference number: 5 (lower is better)
Translates to: CKHRQVPGVSLDKHWKEAREGSL*ERTAMS
Trigger: GGACATAGCAGTCCTTTCCAACAGCGACCCCTCCCT...AGCTTCTTTCCAGTGCTTATCCAGAGAGACCCCAGGGACCTGTCTATGTTTACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CAA 90 bp GGAACAGAGGATGTGCTTCAAGTCTGGCCACAGCTCTCTCTTGTGCTGCCGATGGAGAGATGCTTGATCTaGATTCCAGCTACCAAGTCC +
Preference number: 5 (lower is better)
Translates to: GTEDVLQVWPQLSLVLPMERCLI*IPATKS
Trigger: GGACTTGGTAGCTGGAATCAAGATCAAGCATCTCTC...CATCGGCAGCACAAGAGAGAGCTGTGGCCAGACTTGAAGCACATCCTCTGTTCC
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CAA 90 bp CTCTGTGGGATGACATCTGGCTCAGGATCAGATCAGCCCGGTCCACTGTCCATAACCTTGGAGAGATGCTaGATCTTGATTCCAGCTACC +
Preference number: 5 (lower is better)
Translates to: LCGMTSGSGSDQPGPLSITLERC*ILIPAT
Trigger: GGTAGCTGGAATCAAGATCAAGCATCTCTCCAAGGT...TATGGACAGTGGACCGGGCTGATCTGATCCTGAGCCAGATGTCATCCCACAGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CAA 90 bp AACTTTGCTGCTCATTCCTGGCAGCCTGGAAGTCCTTGTTGCTGCTCAACCCTGCCCATCTTGTCCTTATaGCCCACTTGGAACACCTTG +
Preference number: 5 (lower is better)
Translates to: NFAAHSWQPGSPCCCSTLPILSL*PTWNTL
Trigger: CAAGGTGTTCCAAGTGGGCAATAAGGACAAGATGGG...CAGGGTTGAGCAGCAACAAGGACTTCCAGGCTGCCAGGAATGAGCAGCAAAGTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CAA 90 bp CTCTGTGGGATGACATCTGGCTCAGGATCAGATCAGCCCGGTCCACTGTCCATATCGGCAACTGTCAGGTaGTCAAACAGTACATCATGC +
Preference number: 5 (lower is better)
Translates to: LCGMTSGSGSDQPGPLSISATVR*SNSTSC
Trigger: GCATGATGTACTGTTTGACAACCTGACAGTTGCCGA...TATGGACAGTGGACCGGGCTGATCTGATCCTGAGCCAGATGTCATCCCACAGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CAA 90 bp CTCTGTGGGATGACATCTGGCTCAGGATCAGATCAGCCCGGTCCACTGTCCATAGCTCCGTATTTCTGCTaGAGAAATAGTGAAGACCCG +
Preference number: 5 (lower is better)
Translates to: LCGMTSGSGSDQPGPLSIAPYFC*RNSEDP
Trigger: CGGGTCTTCACTATTTCTCAAGCAGAAATACGGAGC...TATGGACAGTGGACCGGGCTGATCTGATCCTGAGCCAGATGTCATCCCACAGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CAA 90 bp GGTCTGGGACTGTGGTTCCAGAGACCTGACTTCAGGAGTGGAAACCTGCATGCTGAGATTCCTTCAGGATaGCAGTGCGGTTCTTTTACC +
Preference number: 5 (lower is better)
Translates to: GLGLWFQRPDFRSGNLHAEIPSG*QCGSFT
Trigger: GGTAAAAGAACCGCACTGCAATCCTGAAGGAATCTC...AGCATGCAGGTTTCCACTCCTGAAGTCAGGTCTCTGGAACCACAGTCCCAGACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CAA 90 bp GGAACAGAGGATGTGCTTCAAGTCTGGCCACAGCTCTCTCTTGTGCTGCCGATGGAGATTCCTTCAGGATaGCAGTGCGGTTCTTTTACC +
Preference number: 5 (lower is better)
Translates to: GTEDVLQVWPQLSLVLPMEIPSG*QCGSFT
Trigger: GGTAAAAGAACCGCACTGCAATCCTGAAGGAATCTC...CATCGGCAGCACAAGAGAGAGCTGTGGCCAGACTTGAAGCACATCCTCTGTTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CAA 90 bp TATCTTCCCTTCATGAAGGTATTTGCAACTTTGCTGCTCATTCCTGGCAGCCTGCTCTCCAGCATGGCATaGGGGACATGGTGGTGCACC +
Preference number: 5 (lower is better)
Translates to: YLPFMKVFATLLLIPGSLLSSMA*GTWWCT
Trigger: GGTGCACCACCATGTCCCCAATGCCATGCTGGAGAG...CAGGCTGCCAGGAATGAGCAGCAAAGTTGCAAATACCTTCATGAAGGGAAGATA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CAA 90 bp AACTTTGCTGCTCATTCCTGGCAGCCTGGAAGTCCTTGTTGCTGCTCAACCCTGAGCCCTGTGTTGAGCTaGACCAAAACTTCCTCTTCC +
Preference number: 5 (lower is better)
Translates to: NFAAHSWQPGSPCCCSTLSPVLS*TKTSSS
Trigger: GGAAGAGGAAGTTTTGGTCAAGCTCAACACAGGGCT...CAGGGTTGAGCAGCAACAAGGACTTCCAGGCTGCCAGGAATGAGCAGCAAAGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
CDS-3UTR CAA 90 bp CATACTGGAAGGAACATTGACATCCAAGGATGCCTGTGCAGTTGCATTGGGAGCAGTCGCCACAGCAGGTaGGTCTCAATGAGGAACAGC +
Preference number: 5 (lower is better)
Translates to: HTGRNIDIQGCLCSCIGSSRHSR*VSMRNS
Trigger: GCTGTTCCTCATTGAGACCAACCTGCTGTGGCGACT...GCTCCCAATGCAACTGCACAGGCATCCTTGGATGTCAATGTTCCTTCCAGTATG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CAA 90 bp TTCCTGGCAGCCTGGAAGTCCTTGTTGCTGCTCAACCCTGTTGGCTTTCTTTCCGTTTTTCCAGCTCCATaGAAACCCAACAGGCCGAAG +
Preference number: 5 (lower is better)
Translates to: FLAAWKSLLLLNPVGFLSVFPAP*KPNRPK
Trigger: CTTCGGCCTGTTGGGTTTCAATGGAGCTGGAAAAAC...GGAAAGAAAGCCAACAGGGTTGAGCAGCAACAAGGACTTCCAGGCTGCCAGGAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CAA 90 bp GGAACAGAGGATGTGCTTCAAGTCTGGCCACAGCTCTCTCTTGTGCTGCCGATGACTCCATACTTCTCCTaGGCTTTCTCCAGGATACCA +
Preference number: 5 (lower is better)
Translates to: GTEDVLQVWPQLSLVLPMTPYFS*AFSRIP
Trigger: TGGTATCCTGGAGAAAGCCAAGGAGAAGTATGGAGT...CATCGGCAGCACAAGAGAGAGCTGTGGCCAGACTTGAAGCACATCCTCTGTTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CAA 90 bp GGTCTGGGACTGTGGTTCCAGAGACCTGACTTCAGGAGTGGAAACCTGCATGCTACTCCATACTTCTCCTaGGCTTTCTCCAGGATACCA +
Preference number: 5 (lower is better)
Translates to: GLGLWFQRPDFRSGNLHATPYFS*AFSRIP
Trigger: TGGTATCCTGGAGAAAGCCAAGGAGAAGTATGGAGT...AGCATGCAGGTTTCCACTCCTGAAGTCAGGTCTCTGGAACCACAGTCCCAGACC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS TCA 90 bp GAGCAGCAGAGGAAGCTGGTACTGGATGGCAATGAGGAATGGATCTaGGATGTATGGTGGGAACGGGAACCTTTTGGTGATCACCATGAG +
Preference number: 5 (lower is better)
Translates to: EQQRKLVLDGNEEWI*DVWWEREPFGDHHE
Trigger: CTCATGGTGATCACCAAAAGGTTCCCGTTCCCACCATACATCTCAGATCCATTCCTCATTGCCATCCAGTACCAGCTTCCTCTGCTGCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS CCA 90 bp CACCTTGGAGAGATGCTTGATCTTGATTCCAGCTACCAAGTCCTCTaGCTCGGCTTCAAAGTACTCGTTCCTGAGAGCTTTCTCTGGGTC +
Preference number: 5 (lower is better)
Translates to: HLGEMLDLDSSYQVL*LGFKVLVPESFLWV
Trigger: GACCCAGAGAAAGCTCTCAGGAACGAGTACTTTGAAGCCGAGCCAGAGGACTTGGTAGCTGGAATCAAGATCAAGCATCTCTCCAAGGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CAA 90 bp GGAACAGAGGATGTGCTTCAAGTCTGGCCACAGCTCTCTCTTGTGCTGCCGATGACAGGACAAGAGCTTTaGACTCAGTGTCATCCAGTT +
Preference number: 5 (lower is better)
Translates to: GTEDVLQVWPQLSLVLPMTGQEL*TQCHPV
Trigger: AACTGGATGACACTGAGTCAAAAGCTCTTGTCCTGT...CATCGGCAGCACAAGAGAGAGCTGTGGCCAGACTTGAAGCACATCCTCTGTTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CAA 90 bp CATACTGGAAGGAACATTGACATCCAAGGATGCCTGTGCAGTTGCATTGGGAGCAAATTGTCGTCCACGTaGACAGGGTTGAGGAGGTCC +
Preference number: 5 (lower is better)
Translates to: HTGRNIDIQGCLCSCIGSKLSST*TGLRRS
Trigger: GGACCTCCTCAACCCTGTCAACGTGGACGACAATTT...GCTCCCAATGCAACTGCACAGGCATCCTTGGATGTCAATGTTCCTTCCAGTATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CAA 90 bp TTCCTGGCAGCCTGGAAGTCCTTGTTGCTGCTCAACCCTGTTGGCTTTCTTTCCGCTCCGTATTTCTGCTaGAGAAATAGTGAAGACCCG +
Preference number: 5 (lower is better)
Translates to: FLAAWKSLLLLNPVGFLSAPYFC*RNSEDP
Trigger: CGGGTCTTCACTATTTCTCAAGCAGAAATACGGAGC...GGAAAGAAAGCCAACAGGGTTGAGCAGCAACAAGGACTTCCAGGCTGCCAGGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CAA 90 bp GAAGGTATTTGCAACTTTGCTGCTCATTCCTGGCAGCCTGGAAGTCCTTGTTGCGGGCCACACAATAGCTaGAACAGAAGGTTGTCCACG +
Preference number: 5 (lower is better)
Translates to: EGICNFAAHSWQPGSPCCGPHNS*NRRLST
Trigger: CGTGGACAACCTTCTGTTCAAGCTATTGTGTGGCCC...GCAACAAGGACTTCCAGGCTGCCAGGAATGAGCAGCAAAGTTGCAAATACCTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
CDS-3UTR CAA 90 bp AACTTTGCTGCTCATTCCTGGCAGCCTGGAAGTCCTTGTTGCTGCTCAACCCTGATGGCGATGAGCAAATaGAGGGCAATGTCAAATCCC +
Preference number: 5 (lower is better)
Translates to: NFAAHSWQPGSPCCCSTLMAMSK*RAMSNP
Trigger: GGGATTTGACATTGCCCTCAATTTGCTCATCGCCAT...CAGGGTTGAGCAGCAACAAGGACTTCCAGGCTGCCAGGAATGAGCAGCAAAGTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CAA 90 bp TGTAAACATAGACAGGTCCCTGGGGTCTCTCTGGATAAGCACTGGAAAGAAGCTTCCCCAGGCAGTGGTTaGGCAGCACCAAGAACACAT +
Preference number: 5 (lower is better)
Translates to: CKHRQVPGVSLDKHWKEASPGSG*AAPRTH
Trigger: ATGTGTTCTTGGTGCTGCCAAACCACTGCCTGGGGA...AGCTTCTTTCCAGTGCTTATCCAGAGAGACCCCAGGGACCTGTCTATGTTTACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CAA 90 bp GTGTATCCTCAAGAGATGACACTACTCAGCCCTGTAGTGGTCCCTGACAATCCTAGGATACCAAATACCTaGGCCCAGCTGAGGTCACAG +
Preference number: 5 (lower is better)
Translates to: VYPQEMTLLSPVVVPDNPRIPNT*AQLRSQ
Trigger: CTGTGACCTCAGCTGGGCCAAGGTATTTGGTATCCT...AGGATTGTCAGGGACCACTACAGGGCTGAGTAGTGTCATCTCTTGAGGATACAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS TCA 90 bp CTGACCGCCATCCCCAGGCAGTGGTTTGGCAGCACCAAGAACACATaGTCTAAGGTTCTGGAAAGTTCTTCTAACTTCACAGCTGGGATA +
Preference number: 5 (lower is better)
Translates to: LTAIPRQWFGSTKNT*SKVLESSSNFTAGI
Trigger: TATCCCAGCTGTGAAGTTAGAAGAACTTTCCAGAACCTTAGATCATGTGTTCTTGGTGCTGCCAAACCACTGCCTGGGGATGGCGGTCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CAA 90 bp CATACTGGAAGGAACATTGACATCCAAGGATGCCTGTGCAGTTGCATTGGGAGCACGGCTGCTGCTATGTaGGCTTTACTGAAGAAGGTG +
Preference number: 5 (lower is better)
Translates to: HTGRNIDIQGCLCSCIGSTAAAM*ALLKKV
Trigger: CACCTTCTTCAGTAAAGCCAACATAGCAGCAGCCGT...GCTCCCAATGCAACTGCACAGGCATCCTTGGATGTCAATGTTCCTTCCAGTATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CAA 90 bp CATTCCTGGCAGCCTGGAAGTCCTTGTTGCTGCTCAACCCTGTTGGCTTTCTTTATGTGTAGCATCTGCTaGACTTCCTCAGGACACTTC +
Preference number: 5 (lower is better)
Translates to: HSWQPGSPCCCSTLLAFFMCSIC*TSSGHF
Trigger: GAAGTGTCCTGAGGAAGTCAAGCAGATGCTACACAT...AAAGAAAGCCAACAGGGTTGAGCAGCAACAAGGACTTCCAGGCTGCCAGGAATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CAA 90 bp CATACTGGAAGGAACATTGACATCCAAGGATGCCTGTGCAGTTGCATTGGGAGCAGGAAGCTGAATGGCTaGAATGTCCATGCTGGTGTC +
Preference number: 5 (lower is better)
Translates to: HTGRNIDIQGCLCSCIGSRKLNG*NVHAGV
Trigger: GACACCAGCATGGACATTCAAGCCATTCAGCTTCCT...GCTCCCAATGCAACTGCACAGGCATCCTTGGATGTCAATGTTCCTTCCAGTATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
CDS-3UTR CAA 90 bp TCATATGTAAACATAGACAGGTCCCTGGGGTCTCTCTGGATAAGCACTGGAAAGGAGTGGTATGCCTGGTaGTTGAACAGGGCAGTGACC +
Preference number: 5 (lower is better)
Translates to: SYVNIDRSLGSLWISTGKEWYAW*LNRAVT
Trigger: GGTCACTGCCCTGTTCAACAACCAGGCATACCACTC...CTTTCCAGTGCTTATCCAGAGAGACCCCAGGGACCTGTCTATGTTTACATATGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
CDS-3UTR CAA 90 bp CATACTGGAAGGAACATTGACATCCAAGGATGCCTGTGCAGTTGCATTGGGAGCATGCCCGACAGGATGTaGAATATGGTCAGCCTGGTA +
Preference number: 5 (lower is better)
Translates to: HTGRNIDIQGCLCSCIGSMPDRM*NMVSLV
Trigger: TACCAGGCTGACCATATTCAACATCCTGTCGGGCAT...GCTCCCAATGCAACTGCACAGGCATCCTTGGATGTCAATGTTCCTTCCAGTATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CAA 90 bp CATTCCTGGCAGCCTGGAAGTCCTTGTTGCTGCTCAACCCTGTTGGCTTTCTTTCCGTGCACTCTCATCTaGATCATGAATTCCCTTTTC +
Preference number: 5 (lower is better)
Translates to: HSWQPGSPCCCSTLLAFFPCTLI*IMNSLF
Trigger: GAAAAGGGAATTCATGATCAAGATGAGAGTGCACGG...AAAGAAAGCCAACAGGGTTGAGCAGCAACAAGGACTTCCAGGCTGCCAGGAATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CAA 90 bp TATCTTCCCTTCATGAAGGTATTTGCAACTTTGCTGCTCATTCCTGGCAGCCTGGGGAACGGGAACCTTTaGGTGATCACCATGAGCTTC +
Preference number: 5 (lower is better)
Translates to: YLPFMKVFATLLLIPGSLGNGNL*VITMSF
Trigger: GAAGCTCATGGTGATCACCAAAAGGTTCCCGTTCCC...CAGGCTGCCAGGAATGAGCAGCAAAGTTGCAAATACCTTCATGAAGGGAAGATA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CAA 90 bp CATACTGGAAGGAACATTGACATCCAAGGATGCCTGTGCAGTTGCATTGGGAGCGAGAGATGCTTGATCTaGATTCCAGCTACCAAGTCC +
Preference number: 5 (lower is better)
Translates to: HTGRNIDIQGCLCSCIGSERCLI*IPATKS
Trigger: GGACTTGGTAGCTGGAATCAAGATCAAGCATCTCTC...GCTCCCAATGCAACTGCACAGGCATCCTTGGATGTCAATGTTCCTTCCAGTATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CAA 90 bp TCATATGTAAACATAGACAGGTCCCTGGGGTCTCTCTGGATAAGCACTGGAAAGAGGGCAAGCCCTGTGTaGAGCTTGACCAAAACTTCC +
Preference number: 5 (lower is better)
Translates to: SYVNIDRSLGSLWISTGKRASPV*SLTKTS
Trigger: GGAAGTTTTGGTCAAGCTCAACACAGGGCTTGCCCT...CTTTCCAGTGCTTATCCAGAGAGACCCCAGGGACCTGTCTATGTTTACATATGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
CDS-3UTR CAA 90 bp TCATATGTAAACATAGACAGGTCCCTGGGGTCTCTCTGGATAAGCACTGGAAAGGGGCCACACAATAGCTaGAACAGAAGGTTGTCCACG +
Preference number: 5 (lower is better)
Translates to: SYVNIDRSLGSLWISTGKGPHNS*NRRLST
Trigger: CGTGGACAACCTTCTGTTCAAGCTATTGTGTGGCCC...CTTTCCAGTGCTTATCCAGAGAGACCCCAGGGACCTGTCTATGTTTACATATGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
CDS-3UTR CAA 90 bp CATACTGGAAGGAACATTGACATCCAAGGATGCCTGTGCAGTTGCATTGGGAGCATGGCGATGAGCAAATaGAGGGCAATGTCAAATCCC +
Preference number: 5 (lower is better)
Translates to: HTGRNIDIQGCLCSCIGSMAMSK*RAMSNP
Trigger: GGGATTTGACATTGCCCTCAATTTGCTCATCGCCAT...GCTCCCAATGCAACTGCACAGGCATCCTTGGATGTCAATGTTCCTTCCAGTATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CAA 90 bp TGTAAACATAGACAGGTCCCTGGGGTCTCTCTGGATAAGCACTGGAAAGAAGCTGTTTTTCCAGCTCCATaGAAACCCAACAGGCCGAAG +
Preference number: 5 (lower is better)
Translates to: CKHRQVPGVSLDKHWKEAVFPAP*KPNRPK
Trigger: CTTCGGCCTGTTGGGTTTCAATGGAGCTGGAAAAAC...AGCTTCTTTCCAGTGCTTATCCAGAGAGACCCCAGGGACCTGTCTATGTTTACA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CAA 90 bp AACTTTGCTGCTCATTCCTGGCAGCCTGGAAGTCCTTGTTGCTGCTCAACCCTGTCCCCAGTCAGCATTTaGAATGTTGTGGTTTTTCCA +
Preference number: 5 (lower is better)
Translates to: NFAAHSWQPGSPCCCSTLSPVSI*NVVVFP
Trigger: TGGAAAAACCACAACATTCAAAATGCTGACTGGGGA...CAGGGTTGAGCAGCAACAAGGACTTCCAGGCTGCCAGGAATGAGCAGCAAAGTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS TCA 90 bp CTGGTACTGGATGTTGTACTTCTTGCAGTAGTGGGCAGCAAGCTCTaGGGAAGTGCAGTATCGCCGAGTCTCATAGTTCTCATAGAAGTT +
Preference number: 5 (lower is better)
Translates to: LVLDVVLLAVVGSKL*GSAVSPSLIVLIEV
Trigger: AACTTCTATGAGAACTATGAGACTCGGCGATACTGCACTTCCTCAGAGCTTGCTGCCCACTACTGCAAGAAGTACAACATCCAGTACCAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CAA 90 bp GTGTATCCTCAAGAGATGACACTACTCAGCCCTGTAGTGGTCCCTGACAATCCTACAGGACAAGAGCTTTaGACTCAGTGTCATCCAGTT +
Preference number: 5 (lower is better)
Translates to: VYPQEMTLLSPVVVPDNPTGQEL*TQCHPV
Trigger: AACTGGATGACACTGAGTCAAAAGCTCTTGTCCTGT...AGGATTGTCAGGGACCACTACAGGGCTGAGTAGTGTCATCTCTTGAGGATACAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CAA 90 bp TCATATGTAAACATAGACAGGTCCCTGGGGTCTCTCTGGATAAGCACTGGAAAGCAGCATCCCCAGCACTaGTCCAAAGCAGAAATTGTC +
Preference number: 5 (lower is better)
Translates to: SYVNIDRSLGSLWISTGKQHPQH*SKAEIV
Trigger: GACAATTTCTGCTTTGGACAAGTGCTGGGGATGCTG...CTTTCCAGTGCTTATCCAGAGAGACCCCAGGGACCTGTCTATGTTTACATATGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CAA 90 bp TATCTTCCCTTCATGAAGGTATTTGCAACTTTGCTGCTCATTCCTGGCAGCCTGCCCATCTTGTCCTTATaGCCCACTTGGAACACCTTG +
Preference number: 5 (lower is better)
Translates to: YLPFMKVFATLLLIPGSLPILSL*PTWNTL
Trigger: CAAGGTGTTCCAAGTGGGCAATAAGGACAAGATGGG...CAGGCTGCCAGGAATGAGCAGCAAAGTTGCAAATACCTTCATGAAGGGAAGATA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CAA 90 bp TGTAAACATAGACAGGTCCCTGGGGTCTCTCTGGATAAGCACTGGAAAGAAGCTGCTCCGTATTTCTGCTaGAGAAATAGTGAAGACCCG +
Preference number: 5 (lower is better)
Translates to: CKHRQVPGVSLDKHWKEAAPYFC*RNSEDP
Trigger: CGGGTCTTCACTATTTCTCAAGCAGAAATACGGAGC...AGCTTCTTTCCAGTGCTTATCCAGAGAGACCCCAGGGACCTGTCTATGTTTACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CAA 90 bp CATTCCTGGCAGCCTGGAAGTCCTTGTTGCTGCTCAACCCTGTTGGCTTTCTTTTCCCCAGTCAGCATTTaGAATGTTGTGGTTTTTCCA +
Preference number: 5 (lower is better)
Translates to: HSWQPGSPCCCSTLLAFFSPVSI*NVVVFP
Trigger: TGGAAAAACCACAACATTCAAAATGCTGACTGGGGA...AAAGAAAGCCAACAGGGTTGAGCAGCAACAAGGACTTCCAGGCTGCCAGGAATG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CAA 90 bp TATCTTCCCTTCATGAAGGTATTTGCAACTTTGCTGCTCATTCCTGGCAGCCTGATGGCGATGAGCAAATaGAGGGCAATGTCAAATCCC +
Preference number: 5 (lower is better)
Translates to: YLPFMKVFATLLLIPGSLMAMSK*RAMSNP
Trigger: GGGATTTGACATTGCCCTCAATTTGCTCATCGCCAT...CAGGCTGCCAGGAATGAGCAGCAAAGTTGCAAATACCTTCATGAAGGGAAGATA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CAA 90 bp TCATATGTAAACATAGACAGGTCCCTGGGGTCTCTCTGGATAAGCACTGGAAAGACAGGACAAGAGCTTTaGACTCAGTGTCATCCAGTT +
Preference number: 5 (lower is better)
Translates to: SYVNIDRSLGSLWISTGKTGQEL*TQCHPV
Trigger: AACTGGATGACACTGAGTCAAAAGCTCTTGTCCTGT...CTTTCCAGTGCTTATCCAGAGAGACCCCAGGGACCTGTCTATGTTTACATATGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CAA 90 bp AGAATCACAATATGTTTAAGTGTATCCTCAAGAGATGACACTACTCAGCCCTGTACCTTGGAGAGCTCGTaGATGATCAGTGGTGTGTCG +
Preference number: 5 (lower is better)
Translates to: RITICLSVSSRDDTTQPCTLESS*MISGVS
Trigger: CGACACACCACTGATCATCAACGAGCTCTCCAAGGT...ACAGGGCTGAGTAGTGTCATCTCTTGAGGATACACTTAAACATATTGTGATTCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CAA 90 bp TCATATGTAAACATAGACAGGTCCCTGGGGTCTCTCTGGATAAGCACTGGAAAGTCCCCAGTCAGCATTTaGAATGTTGTGGTTTTTCCA +
Preference number: 5 (lower is better)
Translates to: SYVNIDRSLGSLWISTGKSPVSI*NVVVFP
Trigger: TGGAAAAACCACAACATTCAAAATGCTGACTGGGGA...CTTTCCAGTGCTTATCCAGAGAGACCCCAGGGACCTGTCTATGTTTACATATGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CAA 90 bp AGAATCACAATATGTTTAAGTGTATCCTCAAGAGATGACACTACTCAGCCCTGTAGGATACCAAATACCTaGGCCCAGCTGAGGTCACAG +
Preference number: 5 (lower is better)
Translates to: RITICLSVSSRDDTTQPCRIPNT*AQLRSQ
Trigger: CTGTGACCTCAGCTGGGCCAAGGTATTTGGTATCCT...ACAGGGCTGAGTAGTGTCATCTCTTGAGGATACACTTAAACATATTGTGATTCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CAA 90 bp AGAATCACAATATGTTTAAGTGTATCCTCAAGAGATGACACTACTCAGCCCTGTACCTTGGAGAGATGCTaGATCTTGATTCCAGCTACC +
Preference number: 5 (lower is better)
Translates to: RITICLSVSSRDDTTQPCTLERC*ILIPAT
Trigger: GGTAGCTGGAATCAAGATCAAGCATCTCTCCAAGGT...ACAGGGCTGAGTAGTGTCATCTCTTGAGGATACACTTAAACATATTGTGATTCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS-3UTR CAA 90 bp AGAATCACAATATGTTTAAGTGTATCCTCAAGAGATGACACTACTCAGCCCTGTGAGATTCCTTCAGGATaGCAGTGCGGTTCTTTTACC +
Preference number: 5 (lower is better)
Translates to: RITICLSVSSRDDTTQPCEIPSG*QCGSFT
Trigger: GGTAAAAGAACCGCACTGCAATCCTGAAGGAATCTC...ACAGGGCTGAGTAGTGTCATCTCTTGAGGATACACTTAAACATATTGTGATTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS TCA 72 bp ATTTCACCGCCAGCGGCAGGGGGTCCTGGCTGTGGTTaGAGCTGTGCTCAAATACCACAGCTGCCAGCACGC +
Preference number: 6 (lower is better)
Translates to: ISPPAAGGPGCG*SCAQIPQLPAR
Trigger: GCGTGCTGGCAGCTGTGGTATTTGAGCACAGCTTCAACCACAGCCAGGACCCCCTGCCGCTGGCGGTGAAAT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS TCA 72 bp GCCTGCAGCATGTCCCTTAGATTCTCAGACAGCTGCTaGGCCAGCCTGGATGTGCCTGGGACCGAGAAGGGC +
Preference number: 6 (lower is better)
Translates to: ACSMSLRFSDSC*ASLDVPGTEKG
Trigger: GCCCTTCTCGGTCCCAGGCACATCCAGGCTGGCTCAGCAGCTGTCTGAGAATCTAAGGGACATGCTGCAGGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
CDS CCA 72 bp GTGGTCAGCAGGACGGTGCGGTCACTCTTCTGCTGCTaGAGAAGGTCCCAGATGGCCCTTCTGGACACTGCA +
Preference number: 6 (lower is better)
Translates to: VVSRTVRSLFCC*RRSQMALLDTA
Trigger: TGCAGTGTCCAGAAGGGCCATCTGGGACCTTCTCCAGCAGCAGAAGAGTGACCGCACCGTCCTGCTGACCAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS GCA 72 bp AGATGCCCCCTGAGGCAGCCATGGAAGTCACAAACTTaGCCACGCCTGGGGTGCTCCAGGCATAGAAGCTCT +
Preference number: 6 (lower is better)
Translates to: RCPLRQPWKSQT*PRLGCSRHRSS
Trigger: AGAGCTTCTATGCCTGGAGCACCCCAGGCGTGGGCAAGTTTGTGACTTCCATGGCTGCCTCAGGGGGCATCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS CCA 72 bp TGCGGTCACTCTTCTGCTGCTGGAGAAGGTCCCAGATaGCCCTTCTGGACACTGCATCCATGCCTGAGGTGG +
Preference number: 6 (lower is better)
Translates to: CGHSSAAGEGPR*PFWTLHPCLRW
Trigger: CCACCTCAGGCATGGATGCAGTGTCCAGAAGGGCCATCTGGGACCTTCTCCAGCAGCAGAAGAGTGACCGCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS CCA 72 bp CCATTGAAACCCAACAGGCCGAAGCACTCCCCTTTCTaGACCGCAAGGGAGATCCTGTCCACGGCAAGGAGC +
Preference number: 6 (lower is better)
Translates to: PLKPNRPKHSPF*TAREILSTARS
Trigger: GCTCCTTGCCGTGGACAGGATCTCCCTTGCGGTCCAGAAAGGGGAGTGCTTCGGCCTGTTGGGTTTCAATGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS CAA 90 bp GCTGAGTCCAGCAGCAGCATCCCCAGCACTTGTCCAAAGCAGAAATaGTCGTCCACGTTGACAGGGTTGAGGAGGTCCCGCCACTGGATG +
Preference number: 6 (lower is better)
Translates to: AESSSSIPSTCPKQK*SSTLTGLRRSRHWM
Trigger: CATCCAGTGGCGGGACCTCCTCAACCCTGTCAACGTGGACGACAATTTCTGCTTTGGACAAGTGCTGGGGATGCTGCTGCTGGACTCAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS CAA 90 bp ACGGCAAGGAGCGGTGCTCGCTGGTCATACACCTTGGAGAGCTCGTaGATGATCAGTGGTGTGTCGAGCATGGAGTCCAAGCTAGGGACC +
Preference number: 6 (lower is better)
Translates to: TARSGARWSYTLESS*MISGVSSMESKLGT
Trigger: GGTCCCTAGCTTGGACTCCATGCTCGACACACCACTGATCATCAACGAGCTCTCCAAGGTGTATGACCAGCGAGCACCGCTCCTTGCCGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS TCA 72 bp CTCAATGAGGAACAGCAGGGTGAGGTAGATGCCCCCTaGGGCAGCCATGGAAGTCACAAACTTGCCCACGCC +
Preference number: 6 (lower is better)
Translates to: LNEEQQGEVDAP*GSHGSHKLAHA
Trigger: GGCGTGGGCAAGTTTGTGACTTCCATGGCTGCCTCAGGGGGCATCTACCTCACCCTGCTGTTCCTCATTGAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS TCA 72 bp AGCCCATCCGCTGCCGCACCTTCCCGATGTCAGAACTaGTGCTGTAACCACCAACAAAGGCATCCCCTGAGG +
Preference number: 6 (lower is better)
Translates to: SPSAAAPSRCQN*CCNHQQRHPLR
Trigger: CCTCAGGGGATGCCTTTGTTGGTGGTTACAGCATCAGTTCTGACATCGGGAAGGTGCGGCAGCGGATGGGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS CCA 72 bp ACAGCTCAGCCCCAGCATGGCTCTCCAGCATGGCATTaGGGACATGGTGGTGCACCAGCTGAGAGATTCCTT +
Preference number: 6 (lower is better)
Translates to: TAQPQHGSPAWH*GHGGAPAERFL
Trigger: AAGGAATCTCTCAGCTGGTGCACCACCATGTCCCCAATGCCATGCTGGAGAGCCATGCTGGGGCTGAGCTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS CAA 72 bp TCCACGGCAAGGAGCGGTGCTCGCTGGTCATACACCTaGGAGAGCTCGTTGATGATCAGTGGTGTGTCGAGC +
Preference number: 6 (lower is better)
Translates to: STARSGARWSYT*ESSLMISGVSS
Trigger: GCTCGACACACCACTGATCATCAACGAGCTCTCCAAGGTGTATGACCAGCGAGCACCGCTCCTTGCCGTGGA
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS CAA 90 bp AGCAGCATCCCCAGCACTTGTCCAAAGCAGAAATTGTCGTCCACGTaGACAGGGTTGAGGAGGTCCCGCCACTGGATGCCAGTGCCTTTG +
Preference number: 6 (lower is better)
Translates to: SSIPSTCPKQKLSST*TGLRRSRHWMPVPL
Trigger: CAAAGGCACTGGCATCCAGTGGCGGGACCTCCTCAACCCTGTCAACGTGGACGACAATTTCTGCTTTGGACAAGTGCTGGGGATGCTGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS TCA 72 bp GTTCTGCCAGAGTCCACCTCCTCCGGAAGGCACAGATaGAGGTTCTCAGTCGCCACAGCAGGTTGGTCTCAA +
Preference number: 6 (lower is better)
Translates to: VLPESTSSGRHR*RFSVATAGWSQ
Trigger: TTGAGACCAACCTGCTGTGGCGACTGAGAACCTTCATCTGTGCCTTCCGGAGGAGGTGGACTCTGGCAGAAC
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS GCA 72 bp CTGTATGCAGCCTTCTTCAGGAACATGGCCCAGAACTaGTGGCAGTGGAGGGCAAGCCCTGTGTTGAGCTTG +
Preference number: 6 (lower is better)
Translates to: LYAAFFRNMAQN*WQWRASPVLSL
Trigger: CAAGCTCAACACAGGGCTTGCCCTCCACTGCCAGCAGTTCTGGGCCATGTTCCTGAAGAAGGCTGCATACAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
CDS GCA 72 bp CTGAGCTGCCACCATCTTCCATTCCCGCCAGCTGTATaGAGCCTTCTTCAGGAACATGGCCCAGAACTGCTG +
Preference number: 6 (lower is better)
Translates to: LSCHHLPFPPAV*SLLQEHGPELL
Trigger: CAGCAGTTCTGGGCCATGTTCCTGAAGAAGGCTGCATACAGCTGGCGGGAATGGAAGATGGTGGCAGCTCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
CDS GCA 72 bp CAGCCATGGAAGTCACAAACTTGCCCACGCCTGGGGTaGTCCAGGCATAGAAGCTCTCCTGGTACTGGATGT +
Preference number: 6 (lower is better)
Translates to: QPWKSQTCPRLG*SRHRSSPGTGC
Trigger: ACATCCAGTACCAGGAGAGCTTCTATGCCTGGAGCACCCCAGGCGTGGGCAAGTTTGTGACTTCCATGGCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS CCA 72 bp GCTCCTGGATGGACTGGTCCGGGTAAACAGTGGCATTaGGCACATTCTCCGACTGGATCTTCAAGCGAAGCC +
Preference number: 6 (lower is better)
Translates to: APGWTGPGKQWH*AHSPTGSSSEA
Trigger: GGCTTCGCTTGAAGATCCAGTCGGAGAATGTGCCCAATGCCACTGTTTACCCGGACCAGTCCATCCAGGAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS CCA 72 bp TATGCAGCCTTCTTCAGGAACATGGCCCAGAACTGCTaGCAGTGGAGGGCAAGCCCTGTGTTGAGCTTGACC +
Preference number: 6 (lower is better)
Translates to: YAAFFRNMAQNC*QWRASPVLSLT
Trigger: GGTCAAGCTCAACACAGGGCTTGCCCTCCACTGCCAGCAGTTCTGGGCCATGTTCCTGAAGAAGGCTGCATA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
CDS CAA 72 bp AGCAGCAGCATCCCCAGCACTTGTCCAAAGCAGAAATaGTCGTCCACGTTGACAGGGTTGAGGAGGTCCCGC +
Preference number: 6 (lower is better)
Translates to: SSSIPSTCPKQK*SSTLTGLRRSR
Trigger: GCGGGACCTCCTCAACCCTGTCAACGTGGACGACAATTTCTGCTTTGGACAAGTGCTGGGGATGCTGCTGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS CAA 90 bp CCCAGCACTTGTCCAAAGCAGAAATTGTCGTCCACGTTGACAGGGTaGAGGAGGTCCCGCCACTGGATGCCAGTGCCTTTGGCTTCGAAT +
Preference number: 6 (lower is better)
Translates to: PSTCPKQKLSSTLTG*RRSRHWMPVPLASN
Trigger: ATTCGAAGCCAAAGGCACTGGCATCCAGTGGCGGGACCTCCTCAACCCTGTCAACGTGGACGACAATTTCTGCTTTGGACAAGTGCTGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS TCA 72 bp CCAAGTCCTCTGGCTCGGCTTCAAAGTACTCGTTCCTaGGAGCTTTCTCTGGGTCGCTGCCTTCCTCTTCCT +
Preference number: 6 (lower is better)
Translates to: PSPLARLQSTRS*ELSLGRCLPLP
Trigger: AGGAAGAGGAAGGCAGCGACCCAGAGAAAGCTCTCAGGAACGAGTACTTTGAAGCCGAGCCAGAGGACTTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS TCA 72 bp CCAGCGTCATGTGGTAGCCAGCTCCGTATTTCTGCTTaGGAAATAGTGAAGACCCGCAGCACTGGAGCTCCC +
Preference number: 6 (lower is better)
Translates to: PASCGSQLRISA*EIVKTRSTGAP
Trigger: GGGAGCTCCAGTGCTGCGGGTCTTCACTATTTCTCAAGCAGAAATACGGAGCTGGCTACCACATGACGCTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS TCA 72 bp AGATCTCAATGGAGGCCTGAGGGCCACACAATAGCTTaGACAGAAGGTTGTCCACGATGGCCAGGGCAGTGG +
Preference number: 6 (lower is better)
Translates to: RSQWRPEGHTIA*TEGCPRWPGQW
Trigger: CCACTGCCCTGGCCATCGTGGACAACCTTCTGTTCAAGCTATTGTGTGGCCCTCAGGCCTCCATTGAGATCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
CDS TCA 72 bp AACCAGAAAGTAGCCACATGGACACCGCTCACAAACTaGACGTGCTTGGCCTGGACGGCCCTCTCACTGACA +
Preference number: 6 (lower is better)
Translates to: NQKVATWTPLTN*TCLAWTALSLT
Trigger: TGTCAGTGAGAGGGCCGTCCAGGCCAAGCACGTTCAGTTTGTGAGCGGTGTCCATGTGGCTACTTTCTGGTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS GCA 72 bp CGCCAGGACCAGGGAGGGGTCGCTGTTGGAAAGGACTaGTATGTCCTTCTTCACTTTGACACAGAACAGGAG +
Preference number: 6 (lower is better)
Translates to: RQDQGGVAVGKD*YVLLHFDTEQE
Trigger: CTCCTGTTCTGTGTCAAAGTGAAGAAGGACATAGCAGTCCTTTCCAACAGCGACCCCTCCCTGGTCCTGGCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS CCA 72 bp GTGGAGGGAATGAGAAAAACAGGGGCAGCTCCTGGATaGACTGGTCCGGGTAAACAGTGGCATTGGGCACAT +
Preference number: 6 (lower is better)
Translates to: VEGMRKTGAAPG*TGPGKQWHWAH
Trigger: ATGTGCCCAATGCCACTGTTTACCCGGACCAGTCCATCCAGGAGCTGCCCCTGTTTTTCTCATTCCCTCCAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS CCA 72 bp TCGTCCACGTTGACAGGGTTGAGGAGGTCCCGCCACTaGATGCCAGTGCCTTTGGCTTCGAATTTTCCTATG +
Preference number: 6 (lower is better)
Translates to: SSTLTGLRRSRH*MPVPLASNFPM
Trigger: CATAGGAAAATTCGAAGCCAAAGGCACTGGCATCCAGTGGCGGGACCTCCTCAACCCTGTCAACGTGGACGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS CAA 72 bp TGTCCAAAGCAGAAATTGTCGTCCACGTTGACAGGGTaGAGGAGGTCCCGCCACTGGATGCCAGTGCCTTTG +
Preference number: 6 (lower is better)
Translates to: CPKQKLSSTLTG*RRSRHWMPVPL
Trigger: CAAAGGCACTGGCATCCAGTGGCGGGACCTCCTCAACCCTGTCAACGTGGACGACAATTTCTGCTTTGGACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS CAA 72 bp AGCGGTGCTCGCTGGTCATACACCTTGGAGAGCTCGTaGATGATCAGTGGTGTGTCGAGCATGGAGTCCAAG +
Preference number: 6 (lower is better)
Translates to: SGARWSYTLESS*MISGVSSMESK
Trigger: CTTGGACTCCATGCTCGACACACCACTGATCATCAACGAGCTCTCCAAGGTGTATGACCAGCGAGCACCGCT
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS CAA 72 bp AAGGTGCTGGCCAGAAATGCCATGGCGATGAGCAAATaGAGGGCAATGTCAAATCCCTTCCGGCCCCGAAGG +
Preference number: 6 (lower is better)
Translates to: KVLARNAMAMSK*RAMSNPFRPRR
Trigger: CCTTCGGGGCCGGAAGGGATTTGACATTGCCCTCAATTTGCTCATCGCCATGGCATTTCTGGCCAGCACCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117337.2
CDS GCA 72 bp CTGGCTGTGGTTGAAGCTGTGCTCAAATACCACAGCTaGCAGCACGCTGGAGGAGTGGTTGTCATAGCGAAT +
Preference number: 6 (lower is better)
Translates to: LAVVEAVLKYHS*QHAGGVVVIAN
Trigger: ATTCGCTATGACAACCACTCCTCCAGCGTGCTGGCAGCTGTGGTATTTGAGCACAGCTTCAACCACAGCCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS CCA 72 bp GCCTCTCATGCTGGTACTGCAGAGCAGGAAGCTGAATaGCTTGAATGTCCATGCTGGTGTCCACCAGCTTAC +
Preference number: 6 (lower is better)
Translates to: ASHAGTAEQEAE*LECPCWCPPAY
Trigger: GTAAGCTGGTGGACACCAGCATGGACATTCAAGCCATTCAGCTTCCTGCTCTGCAGTACCAGCATGAGAGGC
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
CDS CCA 72 bp CAGAGTATTCTCCACACAGGCATTGATGAGCCGCTCTaGGATGCCTCGGAGCCGTGCATACATAACCAGCAT +
Preference number: 6 (lower is better)
Translates to: QSILHTGIDEPL*DASEPCIHNQH
Trigger: ATGCTGGTTATGTATGCACGGCTCCGAGGCATCCCAGAGCGGCTCATCAATGCCTGTGTGGAGAATACTCTG
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS CAA 72 bp AACTGCTGGCAGTGGAGGGCAAGCCCTGTGTTGAGCTaGACCAAAACTTCCTCTTCCTCTATGAGGGCTCCA +
Preference number: 6 (lower is better)
Translates to: NCWQWRASPVLS*TKTSSSSMRAP
Trigger: TGGAGCCCTCATAGAGGAAGAGGAAGTTTTGGTCAAGCTCAACACAGGGCTTGCCCTCCACTGCCAGCAGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
CDS CAA 90 bp AGGATGGAAAAGGTGCTGGCCAGAAATGCCATGGCGATGAGCAAATaGAGGGCAATGTCAAATCCCTTCCGGCCCCGAAGGAAGACTTCC +
Preference number: 6 (lower is better)
Translates to: RMEKVLARNAMAMSK*RAMSNPFRPRRKTS
Trigger: GGAAGTCTTCCTTCGGGGCCGGAAGGGATTTGACATTGCCCTCAATTTGCTCATCGCCATGGCATTTCTGGCCAGCACCTTTTCCATCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000117337.2
CDS TCA 72 bp ACAGCTGCTGTGCAGAGGTGTTGGCATGGTAACGCATaGTGGCTTTGTCTACAGCATGTTGCATGGCCAGGA +
Preference number: 6 (lower is better)
Translates to: TAAVQRCWHGNA*WLCLQHVAWPG
Trigger: TCCTGGCCATGCAACATGCTGTAGACAAAGCCATCATGCGTTACCATGCCAACACCTCTGCACAGCAGCTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS TCA 72 bp TCCAGCATGGCATTGGGGACATGGTGGTGCACCAGCTaGGAGATTCCTTCAGGATTGCAGTGCGGTTCTTTT +
Preference number: 6 (lower is better)
Translates to: SSMALGTWWCTS*EIPSGLQCGSF
Trigger: AAAAGAACCGCACTGCAATCCTGAAGGAATCTCTCAGCTGGTGCACCACCATGTCCCCAATGCCATGCTGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS GCA 72 bp CATGGTGGTGCACCAGCTGAGAGATTCCTTCAGGATTaGAGTGCGGTTCTTTTACCAGCGTCATGTGGTAGC +
Preference number: 6 (lower is better)
Translates to: HGGAPAERFLQD*SAVLLPASCGS
Trigger: GCTACCACATGACGCTGGTAAAAGAACCGCACTGCAATCCTGAAGGAATCTCTCAGCTGGTGCACCACCATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS GCA 72 bp ACTGCAGAGCAGGAAGCTGAATGGCTTGAATGTCCATaGTGGTGTCCACCAGCTTACCAACCCGAAGGAAGA +
Preference number: 6 (lower is better)
Translates to: TAEQEAEWLECP*WCPPAYQPEGR
Trigger: TCTTCCTTCGGGTTGGTAAGCTGGTGGACACCAGCATGGACATTCAAGCCATTCAGCTTCCTGCTCTGCAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
CDS CCA 72 bp GCAGAGCAGGAAGCTGAATGGCTTGAATGTCCATGCTaGTGTCCACCAGCTTACCAACCCGAAGGAAGACTT +
Preference number: 6 (lower is better)
Translates to: AEQEAEWLECPC*CPPAYQPEGRL
Trigger: AAGTCTTCCTTCGGGTTGGTAAGCTGGTGGACACCAGCATGGACATTCAAGCCATTCAGCTTCCTGCTCTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
CDS CCA 72 bp TTCCTCTTCCTCTATGAGGGCTCCAATGCCATTCGTTaGGTCCATCACCCCACACAGGTTACTGTCCAAAGC +
Preference number: 6 (lower is better)
Translates to: FLFLYEGSNAIR*VHHPTQVTVQS
Trigger: GCTTTGGACAGTAACCTGTGTGGGGTGATGGACCCAACGAATGGCATTGGAGCCCTCATAGAGGAAGAGGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
CDS CAA 72 bp AAGGTGCTGGCCAGAAATGCCATGGCGATGAGCAAATaGAGGGCAATGTCAAATCCCTTCCGGCCCTCATTG +
Preference number: 6 (lower is better)
Translates to: KVLARNAMAMSK*RAMSNPFRPSL
Trigger: CAATGAGGGCCGGAAGGGATTTGACATTGCCCTCAATTTGCTCATCGCCATGGCATTTCTGGCCAGCACCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
CDS CAA 90 bp AGGGAGGGGTCGCTGTTGGAAAGGACTGCTATGTCCTTCTTCACTTaGACACAGAACAGGAGGGTCATGAAGGAGACCACGATGAGGAAG +
Preference number: 6 (lower is better)
Translates to: REGSLLERTAMSFFT*TQNRRVMKETTMRK
Trigger: CTTCCTCATCGTGGTCTCCTTCATGACCCTCCTGTTCTGTGTCAAAGTGAAGAAGGACATAGCAGTCCTTTCCAACAGCGACCCCTCCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS CAA 90 bp AGGATGGAAAAGGTGCTGGCCAGAAATGCCATGGCGATGAGCAAATaGAGGGCAATGTCAAATCCCTTCCGGCCCTCATTGAAGTGGTCC +
Preference number: 6 (lower is better)
Translates to: RMEKVLARNAMAMSK*RAMSNPFRPSLKWS
Trigger: GGACCACTTCAATGAGGGCCGGAAGGGATTTGACATTGCCCTCAATTTGCTCATCGCCATGGCATTTCTGGCCAGCACCTTTTCCATCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
CDS CAA 90 bp GCAATGAGGAATGGATCTGAGATGTATGGTGGGAACGGGAACCTTTaGGTGATCACCATGAGCTTCTGGAACAGCTGCTGTGCAGAGGTG +
Preference number: 6 (lower is better)
Translates to: AMRNGSEMYGGNGNL*VITMSFWNSCCAEV
Trigger: CACCTCTGCACAGCAGCTGTTCCAGAAGCTCATGGTGATCACCAAAAGGTTCCCGTTCCCACCATACATCTCAGATCCATTCCTCATTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS GCA 72 bp GGTATAGGTGAAGAAGTACAGGAAGCCACCCACGGCTaGTGCTATGTTGGCTTTACTGAAGAAGGTGCTGAC +
Preference number: 6 (lower is better)
Translates to: GIGEEVQEATHG*CYVGFTEEGAD
Trigger: GTCAGCACCTTCTTCAGTAAAGCCAACATAGCAGCAGCCGTGGGTGGCTTCCTGTACTTCTTCACCTATACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS GCA 72 bp ACAGTACATCATGCTGGGGACACAGGCCCAAACTCTTaGGGATCTGAGCCATGTCTTGGGAAATTTCGTACC +
Preference number: 6 (lower is better)
Translates to: TVHHAGDTGPNS*GSEPCLGKFRT
Trigger: GGTACGAAATTTCCCAAGACATGGCTCAGATCCGCAAGAGTTTGGGCCTGTGTCCCCAGCATGATGTACTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS CAA 72 bp AAGAAGTACAGGAAGCCACCCACGGCTGCTGCTATGTaGGCTTTACTGAAGAAGGTGCTGACCATGAAGCTG +
Preference number: 6 (lower is better)
Translates to: KKYRKPPTAAAM*ALLKKVLTMKL
Trigger: CAGCTTCATGGTCAGCACCTTCTTCAGTAAAGCCAACATAGCAGCAGCCGTGGGTGGCTTCCTGTACTTCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS CAA 72 bp AACAGGGCAGTGACCACGGTCAGCTCTCCTCTGTCTTaGAAGGATGTTGCTACTAGGCACCGCTCATTAAAG +
Preference number: 6 (lower is better)
Translates to: NRAVTTVSSPLS*KDVATRHRSLK
Trigger: CTTTAATGAGCGGTGCCTAGTAGCAACATCCTTCAAAGACAGAGGAGAGCTGACCGTGGTCACTGCCCTGTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
CDS CAA 90 bp CCCATCTTGTCCTTATTGCCCACTTGGAACACCTTGGAGAGATGCTaGATCTTGATTCCAGCTACCAAGTCCTCTGGCTCGGCTTCAAAG +
Preference number: 6 (lower is better)
Translates to: PILSLLPTWNTLERC*ILIPATKSSGSASK
Trigger: CTTTGAAGCCGAGCCAGAGGACTTGGTAGCTGGAATCAAGATCAAGCATCTCTCCAAGGTGTTCCAAGTGGGCAATAAGGACAAGATGGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS CAA 90 bp AGGTCTCTGATGCCCATCTTGTCCTTATTGCCCACTTGGAACACCTaGGAGAGATGCTTGATCTTGATTCCAGCTACCAAGTCCTCTGGC +
Preference number: 6 (lower is better)
Translates to: RSLMPILSLLPTWNT*ERCLILIPATKSSG
Trigger: GCCAGAGGACTTGGTAGCTGGAATCAAGATCAAGCATCTCTCCAAGGTGTTCCAAGTGGGCAATAAGGACAAGATGGGCATCAGAGACCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS CAA 90 bp ATGCTGGGGACACAGGCCCAAACTCTTGCGGATCTGAGCCATGTCTaGGGAAATTTCGTACCCATGAATATAAGCATGTCCACTGGTAGG +
Preference number: 6 (lower is better)
Translates to: MLGTQAQTLADLSHV*GNFVPMNISMSTGR
Trigger: CCTACCAGTGGACATGCTTATATTCATGGGTACGAAATTTCCCAAGACATGGCTCAGATCCGCAAGAGTTTGGGCCTGTGTCCCCAGCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS TCA 72 bp GATGTTGTACTTCTTGCAGTAGTGGGCAGCAAGCTCTaGGGAAGTGCAGTATCGCCGAGTCTCATAGTTCTC +
Preference number: 6 (lower is better)
Translates to: DVVLLAVVGSKL*GSAVSPSLIVL
Trigger: GAGAACTATGAGACTCGGCGATACTGCACTTCCTCAGAGCTTGCTGCCCACTACTGCAAGAAGTACAACATC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS GCA 72 bp TTTGGTGATCACCATGAGCTTCTGGAACAGCTGCTGTaGAGAGGTGTTGGCATGGTAACGCATGATGGCTTT +
Preference number: 6 (lower is better)
Translates to: FGDHHELLEQLL*RGVGMVTHDGF
Trigger: AAAGCCATCATGCGTTACCATGCCAACACCTCTGCACAGCAGCTGTTCCAGAAGCTCATGGTGATCACCAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS GCA 72 bp ATAGGTGAAGAAGTACAGGAAGCCACCCACGGCTGCTaGTATGTTGGCTTTACTGAAGAAGGTGCTGACCAT +
Preference number: 6 (lower is better)
Translates to: IGEEVQEATHGC*YVGFTEEGADH
Trigger: ATGGTCAGCACCTTCTTCAGTAAAGCCAACATAGCAGCAGCCGTGGGTGGCTTCCTGTACTTCTTCACCTAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS GCA 72 bp ACTGACAGCCAGGATGGAAAAGGTGCTGGCCAGAAATaGCATGGCGATGAGCAAATTGAGGGCAATGTCAAA +
Preference number: 6 (lower is better)
Translates to: TDSQDGKGAGQK*HGDEQIEGNVK
Trigger: TTTGACATTGCCCTCAATTTGCTCATCGCCATGGCATTTCTGGCCAGCACCTTTTCCATCCTGGCTGTCAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS GCA 72 bp CATAGAAGCTCTCCTGGTACTGGATGTTGTACTTCTTaGAGTAGTGGGCAGCAAGCTCTGAGGAAGTGCAGT +
Preference number: 6 (lower is better)
Translates to: HRSSPGTGCCTS*SSGQQALRKCS
Trigger: ACTGCACTTCCTCAGAGCTTGCTGCCCACTACTGCAAGAAGTACAACATCCAGTACCAGGAGAGCTTCTATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS CAA 72 bp TTCAGGGTCAGGTCTCTGATGCCCATCTTGTCCTTATaGCCCACTTGGAACACCTTGGAGAGATGCTTGATC +
Preference number: 6 (lower is better)
Translates to: FRVRSLMPILSL*PTWNTLERCLI
Trigger: GATCAAGCATCTCTCCAAGGTGTTCCAAGTGGGCAATAAGGACAAGATGGGCATCAGAGACCTGACCCTGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS TCA 72 bp AGGAAGCTGGTACTGGATGGCAATGAGGAATGGATCTaGGATGTATGGTGGGAACGGGAACCTTTTGGTGAT +
Preference number: 6 (lower is better)
Translates to: RKLVLDGNEEWI*DVWWEREPFGD
Trigger: ATCACCAAAAGGTTCCCGTTCCCACCATACATCTCAGATCCATTCCTCATTGCCATCCAGTACCAGCTTCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS TCA 72 bp ATGGCAACATTAGATAGGAGACAGGACAAGAGCTTTTaGCTCAGTGTCATCCAGTTGTACCGAGGAGCCACG +
Preference number: 6 (lower is better)
Translates to: MATLDRRQDKSF*LSVIQLYRGAT
Trigger: CGTGGCTCCTCGGTACAACTGGATGACACTGAGTCAAAAGCTCTTGTCCTGTCTCCTATCTAATGTTGCCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS TCA 72 bp TTATCTGTCCTTCGTAGAGGTTCAGGGTCAGGTCTCTaGTGCCCATCTTGTCCTTATTGCCCACTTGGAACA +
Preference number: 6 (lower is better)
Translates to: LSVLRRGSGSGL*CPSCPYCPLGT
Trigger: TGTTCCAAGTGGGCAATAAGGACAAGATGGGCATCAGAGACCTGACCCTGAACCTCTACGAAGGACAGATAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS GCA 72 bp CTCAGGACACTTCTGGAGAGAGAGGCCTTTCAGCTGTaGATAGAAGTAAAGATGTTCGGCAACTGTCAGGTT +
Preference number: 6 (lower is better)
Translates to: LRTLLEREAFQL*IEVKMFGNCQV
Trigger: AACCTGACAGTTGCCGAACATCTTTACTTCTATGCACAGCTGAAAGGCCTCTCTCTCCAGAAGTGTCCTGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS GCA 72 bp ACTTCTTGCAGTAGTGGGCAGCAAGCTCTGAGGAAGTaGAGTATCGCCGAGTCTCATAGTTCTCATAGAAGT +
Preference number: 6 (lower is better)
Translates to: TSCSSGQQALRK*SIAESHSSHRS
Trigger: ACTTCTATGAGAACTATGAGACTCGGCGATACTGCACTTCCTCAGAGCTTGCTGCCCACTACTGCAAGAAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS CCA 72 bp ATGCCAGTGCCTTTGGCTTCGAATTTTCCTATGAGCTaGGCTCCCATTGCCATGGCAACATTAGATAGGAGA +
Preference number: 6 (lower is better)
Translates to: MPVPLASNFPMS*APIAMATLDRR
Trigger: TCTCCTATCTAATGTTGCCATGGCAATGGGAGCCCAGCTCATAGGAAAATTCGAAGCCAAAGGCACTGGCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS CCA 72 bp GAGATGCTTGATCTTGATTCCAGCTACCAAGTCCTCTaGCTCGGCTTCAAAGTACTCGTTCCTGAGAGCTTT +
Preference number: 6 (lower is better)
Translates to: EMLDLDSSYQVL*LGFKVLVPESF
Trigger: AAAGCTCTCAGGAACGAGTACTTTGAAGCCGAGCCAGAGGACTTGGTAGCTGGAATCAAGATCAAGCATCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS CAA 72 bp AATGGATCTGAGATGTATGGTGGGAACGGGAACCTTTaGGTGATCACCATGAGCTTCTGGAACAGCTGCTGT +
Preference number: 6 (lower is better)
Translates to: NGSEMYGGNGNL*VITMSFWNSCC
Trigger: ACAGCAGCTGTTCCAGAAGCTCATGGTGATCACCAAAAGGTTCCCGTTCCCACCATACATCTCAGATCCATT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS CCA 72 bp AGGTCTCTGATGCCCATCTTGTCCTTATTGCCCACTTaGAACACCTTGGAGAGATGCTTGATCTTGATTCCA +
Preference number: 6 (lower is better)
Translates to: RSLMPILSLLPT*NTLERCLILIP
Trigger: TGGAATCAAGATCAAGCATCTCTCCAAGGTGTTCCAAGTGGGCAATAAGGACAAGATGGGCATCAGAGACCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS CAA 72 bp ATGCCCATCTTGTCCTTATTGCCCACTTGGAACACCTaGGAGAGATGCTTGATCTTGATTCCAGCTACCAAG +
Preference number: 6 (lower is better)
Translates to: MPILSLLPTWNT*ERCLILIPATK
Trigger: CTTGGTAGCTGGAATCAAGATCAAGCATCTCTCCAAGGTGTTCCAAGTGGGCAATAAGGACAAGATGGGCAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2
CDS TCA 72 bp ATCCCCAGGCAGTGGTTTGGCAGCACCAAGAACACATaGTCTAAGGTTCTGGAAAGTTCTTCTAACTTCACA +
Preference number: 6 (lower is better)
Translates to: IPRQWFGSTKNT*SKVLESSSNFT
Trigger: TGTGAAGTTAGAAGAACTTTCCAGAACCTTAGATCATGTGTTCTTGGTGCTGCCAAACCACTGCCTGGGGAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039013.15
ENSMUST00000079594.12
ENSMUST00000117337.2