Pregenerated sensors for AATF (Mus musculus)
Ensembl gene IDs: ENSMUSG00000018697Ensembl transcript IDs: ENSMUST00000018841.3
Found 43 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | CAACTCCGTCCTGGCATCATCACTCATTGCGGTGTGGTCAATAGGTaGCATGAAACTCAGGAGCTTGCTAAGGACATGGAACCGAAGTTT | + |
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Preference number: 5 (lower is better) Translates to: QLRPGIITHCGVVNR*HETQELAKDMEPKF Trigger: AAACTTCGGTTCCATGTCCTTAGCAAGCTCCTGAGTTTCATGGCACCTATTGACCACACCGCAATGAGTGATGATGCCAGGACGGAGTTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018841.3 |
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| CDS GCA 90 bp | GCCGAAAAGAGATCGAAACAACTCCGTCCTGGCATCATCACTCATTaGGGTGTGGTCAATAGGTGCCATGAAACTCAGGAGCTTGCTAAG | + |
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Preference number: 5 (lower is better) Translates to: AEKRSKQLRPGIITH*GVVNRCHETQELAK Trigger: CTTAGCAAGCTCCTGAGTTTCATGGCACCTATTGACCACACCGCAATGAGTGATGATGCCAGGACGGAGTTGTTTCGATCTCTTTTCGGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018841.3 |
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| CDS CCA 90 bp | TTTCTGGATTGCAAGCCACTGCCTTCCCATGGCCACCTGATCATTTaGATCCAAAGAGCTGGTTTTCCGCTCTATGAGTTCTCGAAGGAG | + |
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Preference number: 5 (lower is better) Translates to: FLDCKPLPSHGHLII*IQRAGFPLYEFSKE Trigger: CTCCTTCGAGAACTCATAGAGCGGAAAACCAGCTCTTTGGATCCAAATGATCAGGTGGCCATGGGAAGGCAGTGGCTTGCAATCCAGAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018841.3 |
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| CDS CCA 90 bp | AGAGATCGAAACAACTCCGTCCTGGCATCATCACTCATTGCGGTGTaGTCAATAGGTGCCATGAAACTCAGGAGCTTGCTAAGGACATGG | + |
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Preference number: 5 (lower is better) Translates to: RDRNNSVLASSLIAV*SIGAMKLRSLLRTW Trigger: CCATGTCCTTAGCAAGCTCCTGAGTTTCATGGCACCTATTGACCACACCGCAATGAGTGATGATGCCAGGACGGAGTTGTTTCGATCTCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018841.3 |
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| CDS GCA 90 bp | GGTCTTGCCAGAATACCTTTTGTCGGTGTCCAAGAGGGAGACTGGTaGCAACTTTCTAATGCTACTCACTGCCAGATCATCTTTCTCCTC | + |
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Preference number: 5 (lower is better) Translates to: GLARIPFVGVQEGDW*QLSNATHCQIIFLL Trigger: GAGGAGAAAGATGATCTGGCAGTGAGTAGCATTAGAAAGTTGGCACCAGTCTCCCTCTTGGACACCGACAAAAGGTATTCTGGCAAGACC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018841.3 |
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| CDS GCA 90 bp | CCTCCCTCATCAGATGCTTCGTTATCAGATGAACTTGGCAGAGCCTaGTCCCAATGGTCTTCTTTCCAAGCTTTCCTAGAAGTGGTCTTG | + |
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Preference number: 5 (lower is better) Translates to: PPSSDASLSDELGRA*SQWSSFQAFLEVVL Trigger: CAAGACCACTTCTAGGAAAGCTTGGAAAGAAGACCATTGGGAGCAGGCTCTGCCAAGTTCATCTGATAACGAAGCATCTGATGAGGGAGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018841.3 |
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| CDS TCA 90 bp | ATCCCCATCTTCAGATCCTCCCTCATCAGATGCTTCGTTATCAGATaGACTTGGCAGAGCCTGCTCCCAATGGTCTTCTTTCCAAGCTTT | + |
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Preference number: 5 (lower is better) Translates to: IPIFRSSLIRCFVIR*TWQSLLPMVFFPSF Trigger: AAAGCTTGGAAAGAAGACCATTGGGAGCAGGCTCTGCCAAGTTCATCTGATAACGAAGCATCTGATGAGGGAGGATCTGAAGATGGGGAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018841.3 |
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| CDS TCA 90 bp | AGCGCTTGGTCTGTGTCCTCCGAAGCAATCTTTCTTTGTCCATCATaGTATGATCGATCTGAGTCAAGATCGAGCGTTCGAAGGCACCAA | + |
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Preference number: 5 (lower is better) Translates to: SAWSVSSEAIFLCPS*YDRSESRSSVRRHQ Trigger: TTGGTGCCTTCGAACGCTCGATCTTGACTCAGATCGATCATATCATGATGGACAAAGAAAGATTGCTTCGGAGGACACAGACCAAGCGCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018841.3 |
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| CDS CCA 90 bp | AGTGGTCTTGCCAGAATACCTTTTGTCGGTGTCCAAGAGGGAGACTaGTGCCAACTTTCTAATGCTACTCACTGCCAGATCATCTTTCTC | + |
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Preference number: 5 (lower is better) Translates to: SGLARIPFVGVQEGD*CQLSNATHCQIIFL Trigger: GAGAAAGATGATCTGGCAGTGAGTAGCATTAGAAAGTTGGCACCAGTCTCCCTCTTGGACACCGACAAAAGGTATTCTGGCAAGACCACT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018841.3 |
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| CDS CCA 90 bp | TCAGATGCTTCGTTATCAGATGAACTTGGCAGAGCCTGCTCCCAATaGTCTTCTTTCCAAGCTTTCCTAGAAGTGGTCTTGCCAGAATAC | + |
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Preference number: 5 (lower is better) Translates to: SDASLSDELGRACSQ*SSFQAFLEVVLPEY Trigger: GTATTCTGGCAAGACCACTTCTAGGAAAGCTTGGAAAGAAGACCATTGGGAGCAGGCTCTGCCAAGTTCATCTGATAACGAAGCATCTGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018841.3 |
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| CDS CCA 90 bp | GGCTTTAAGTGCTTTGTGACTATTTTTCAGAGCACTGGCAAATTCTaGGCCACCTTTGTCCTTGAAGACAGGGAAAACATCTGGTTGAGG | + |
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Preference number: 5 (lower is better) Translates to: GFKCFVTIFQSTGKF*ATFVLEDRENIWLR Trigger: CCTCAACCAGATGTTTTCCCTGTCTTCAAGGACAAAGGTGGCCCAGAATTTGCCAGTGCTCTGAAAAATAGTCACAAAGCACTTAAAGCC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000018841.3 |
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| CDS CCA 72 bp | ATTGGCAGGGCCCTGAGGAAGCGTCTCTGGTTCTCCTaGCAAGGTCTCTGCAACAGGCTCAGGGACTGGCTC | + |
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Preference number: 6 (lower is better) Translates to: IGRALRKRLWFS*QGLCNRLRDWL Trigger: GAGCCAGTCCCTGAGCCTGTTGCAGAGACCTTGCCAGGAGAACCAGAGACGCTTCCTCAGGGCCCTGCCAAT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018841.3 |
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| CDS GCA 72 bp | AGGTCTCTGCAACAGGCTCAGGGACTGGCTCCGGTTTaGCAAGAACTCGGTAGGCAGAGCGCTTGGTCTGTG | + |
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Preference number: 6 (lower is better) Translates to: RSLQQAQGLAPV*QELGRQSAWSV Trigger: CACAGACCAAGCGCTCTGCCTACCGAGTTCTTGGCAAACCGGAGCCAGTCCCTGAGCCTGTTGCAGAGACCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018841.3 |
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| CDS CCA 72 bp | GCTCCGGTTTGCCAAGAACTCGGTAGGCAGAGCGCTTaGTCTGTGTCCTCCGAAGCAATCTTTCTTTGTCCA | + |
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Preference number: 6 (lower is better) Translates to: APVCQELGRQSA*SVSSEAIFLCP Trigger: TGGACAAAGAAAGATTGCTTCGGAGGACACAGACCAAGCGCTCTGCCTACCGAGTTCTTGGCAAACCGGAGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018841.3 |
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| CDS CAA 90 bp | GCCTGCTCCCAATGGTCTTCTTTCCAAGCTTTCCTAGAAGTGGTCTaGCCAGAATACCTTTTGTCGGTGTCCAAGAGGGAGACTGGTGCC | + |
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Preference number: 6 (lower is better) Translates to: ACSQWSSFQAFLEVV*PEYLLSVSKRETGA Trigger: GGCACCAGTCTCCCTCTTGGACACCGACAAAAGGTATTCTGGCAAGACCACTTCTAGGAAAGCTTGGAAAGAAGACCATTGGGAGCAGGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018841.3 |
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| CDS GCA 72 bp | CCTGGCATCATCACTCATTGCGGTGTGGTCAATAGGTaGCATGAAACTCAGGAGCTTGCTAAGGACATGGAA | + |
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Preference number: 6 (lower is better) Translates to: PGIITHCGVVNR*HETQELAKDME Trigger: TTCCATGTCCTTAGCAAGCTCCTGAGTTTCATGGCACCTATTGACCACACCGCAATGAGTGATGATGCCAGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018841.3 |
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| CDS CCA 72 bp | GCCAGAATACCTTTTGTCGGTGTCCAAGAGGGAGACTaGTGCCAACTTTCTAATGCTACTCACTGCCAGATC | + |
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Preference number: 6 (lower is better) Translates to: ARIPFVGVQEGD*CQLSNATHCQI Trigger: GATCTGGCAGTGAGTAGCATTAGAAAGTTGGCACCAGTCTCCCTCTTGGACACCGACAAAAGGTATTCTGGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018841.3 |
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| CDS CCA 72 bp | AACAACTCCGTCCTGGCATCATCACTCATTGCGGTGTaGTCAATAGGTGCCATGAAACTCAGGAGCTTGCTA | + |
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Preference number: 6 (lower is better) Translates to: NNSVLASSLIAV*SIGAMKLRSLL Trigger: TAGCAAGCTCCTGAGTTTCATGGCACCTATTGACCACACCGCAATGAGTGATGATGCCAGGACGGAGTTGTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018841.3 |
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| CDS CAA 72 bp | CTACCTTCTTGCGGATTTTGCTTCGTAGTTTCTGGATaGCAAGCCACTGCCTTCCCATGGCCACCTGATCAT | + |
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Preference number: 6 (lower is better) Translates to: LPSCGFCFVVSG*QATAFPWPPDH Trigger: ATGATCAGGTGGCCATGGGAAGGCAGTGGCTTGCAATCCAGAAACTACGAAGCAAAATCCGCAAGAAGGTAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018841.3 |
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| CDS CAA 72 bp | GCGGTGTGGTCAATAGGTGCCATGAAACTCAGGAGCTaGCTAAGGACATGGAACCGAAGTTTCCTTCCTTTG | + |
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Preference number: 6 (lower is better) Translates to: AVWSIGAMKLRS*LRTWNRSFLPL Trigger: CAAAGGAAGGAAACTTCGGTTCCATGTCCTTAGCAAGCTCCTGAGTTTCATGGCACCTATTGACCACACCGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018841.3 |
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| CDS GCA 72 bp | TTCCACTTCCTCAGAAACTTTGACACTGGAGAAGGCTaGCACCACACCATCATCTTCACTGTTCCTGTCTTC | + |
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Preference number: 6 (lower is better) Translates to: FHFLRNFDTGEG*HHTIIFTVPVF Trigger: GAAGACAGGAACAGTGAAGATGATGGTGTGGTGGCAGCCTTCTCCAGTGTCAAAGTTTCTGAGGAAGTGGAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018841.3 |
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| CDS CAA 72 bp | CAAGCTTTCCTAGAAGTGGTCTTGCCAGAATACCTTTaGTCGGTGTCCAAGAGGGAGACTGGTGCCAACTTT | + |
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Preference number: 6 (lower is better) Translates to: QAFLEVVLPEYL*SVSKRETGANF Trigger: AAAGTTGGCACCAGTCTCCCTCTTGGACACCGACAAAAGGTATTCTGGCAAGACCACTTCTAGGAAAGCTTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018841.3 |
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| CDS CAA 72 bp | ATCCTCCCTCATCAGATGCTTCGTTATCAGATGAACTaGGCAGAGCCTGCTCCCAATGGTCTTCTTTCCAAG | + |
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Preference number: 6 (lower is better) Translates to: ILPHQMLRYQMN*AEPAPNGLLSK Trigger: CTTGGAAAGAAGACCATTGGGAGCAGGCTCTGCCAAGTTCATCTGATAACGAAGCATCTGATGAGGGAGGAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018841.3 |
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| CDS CAA 90 bp | AGTTTCCTTCCTTTGCTGGCTTTTCTATCTACCTTCTTGCGGATTTaGCTTCGTAGTTTCTGGATTGCAAGCCACTGCCTTCCCATGGCC | + |
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Preference number: 6 (lower is better) Translates to: SFLPLLAFLSTFLRI*LRSFWIASHCLPMA Trigger: GGCCATGGGAAGGCAGTGGCTTGCAATCCAGAAACTACGAAGCAAAATCCGCAAGAAGGTAGATAGAAAAGCCAGCAAAGGAAGGAAACT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018841.3 |
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| CDS TCA 72 bp | TTCAGATCCTCCCTCATCAGATGCTTCGTTATCAGATaGACTTGGCAGAGCCTGCTCCCAATGGTCTTCTTT | + |
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Preference number: 6 (lower is better) Translates to: FRSSLIRCFVIR*TWQSLLPMVFF Trigger: AAAGAAGACCATTGGGAGCAGGCTCTGCCAAGTTCATCTGATAACGAAGCATCTGATGAGGGAGGATCTGAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018841.3 |
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| CDS GCA 72 bp | AGAATACCTTTTGTCGGTGTCCAAGAGGGAGACTGGTaGCAACTTTCTAATGCTACTCACTGCCAGATCATC | + |
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Preference number: 6 (lower is better) Translates to: RIPFVGVQEGDW*QLSNATHCQII Trigger: GATGATCTGGCAGTGAGTAGCATTAGAAAGTTGGCACCAGTCTCCCTCTTGGACACCGACAAAAGGTATTCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018841.3 |
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| CDS CCA 72 bp | TCGTTATCAGATGAACTTGGCAGAGCCTGCTCCCAATaGTCTTCTTTCCAAGCTTTCCTAGAAGTGGTCTTG | + |
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Preference number: 6 (lower is better) Translates to: SLSDELGRACSQ*SSFQAFLEVVL Trigger: CAAGACCACTTCTAGGAAAGCTTGGAAAGAAGACCATTGGGAGCAGGCTCTGCCAAGTTCATCTGATAACGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018841.3 |
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| CDS CCA 72 bp | TGGGCCACCTTTGTCCTTGAAGACAGGGAAAACATCTaGTTGAGGCAACTGATTGGTAGTCAAGAGAGCTTT | + |
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Preference number: 6 (lower is better) Translates to: WATFVLEDRENI*LRQLIGSQESF Trigger: AAAGCTCTCTTGACTACCAATCAGTTGCCTCAACCAGATGTTTTCCCTGTCTTCAAGGACAAAGGTGGCCCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018841.3 |
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| CDS CAA 72 bp | CAATGGTCTTCTTTCCAAGCTTTCCTAGAAGTGGTCTaGCCAGAATACCTTTTGTCGGTGTCCAAGAGGGAG | + |
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Preference number: 6 (lower is better) Translates to: QWSSFQAFLEVV*PEYLLSVSKRE Trigger: CTCCCTCTTGGACACCGACAAAAGGTATTCTGGCAAGACCACTTCTAGGAAAGCTTGGAAAGAAGACCATTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018841.3 |
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| CDS CAA 90 bp | TCTTCTTTCCAAGCTTTCCTAGAAGTGGTCTTGCCAGAATACCTTTaGTCGGTGTCCAAGAGGGAGACTGGTGCCAACTTTCTAATGCTA | + |
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Preference number: 6 (lower is better) Translates to: SSFQAFLEVVLPEYL*SVSKRETGANFLML Trigger: TAGCATTAGAAAGTTGGCACCAGTCTCCCTCTTGGACACCGACAAAAGGTATTCTGGCAAGACCACTTCTAGGAAAGCTTGGAAAGAAGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018841.3 |
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| CDS CAA 90 bp | CCCTCTGAATCCCCATCTTCAGATCCTCCCTCATCAGATATTTTGTaGTCTTCTAAGTCTTCGTCAACATCTTCTGAGATCTCCTCCAGG | + |
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Preference number: 6 (lower is better) Translates to: PSESPSSDPPSSDIL*SSKSSSTSSEISSR Trigger: CCTGGAGGAGATCTCAGAAGATGTTGACGAAGACTTAGAAGACAACAAAATATCTGATGAGGGAGGATCTGAAGATGGGGATTCAGAGGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018841.3 |
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| CDS CAA 90 bp | AGGCCCTCTGAATCCCCATCTTCAGATCCTCCCTCATCAGATATTTaGTTGTCTTCTAAGTCTTCGTCAACATCTTCTGAGATCTCCTCC | + |
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Preference number: 6 (lower is better) Translates to: RPSESPSSDPPSSDI*LSSKSSSTSSEISS Trigger: GGAGGAGATCTCAGAAGATGTTGACGAAGACTTAGAAGACAACAAAATATCTGATGAGGGAGGATCTGAAGATGGGGATTCAGAGGGCCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018841.3 |
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| CDS CAA 90 bp | TGGAACCGAAGTTTCCTTCCTTTGCTGGCTTTTCTATCTACCTTCTaGCGGATTTTGCTTCGTAGTTTCTGGATTGCAAGCCACTGCCTT | + |
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Preference number: 6 (lower is better) Translates to: WNRSFLPLLAFLSTF*RILLRSFWIASHCL Trigger: AAGGCAGTGGCTTGCAATCCAGAAACTACGAAGCAAAATCCGCAAGAAGGTAGATAGAAAAGCCAGCAAAGGAAGGAAACTTCGGTTCCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018841.3 |
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| CDS GCA 72 bp | TCAGATGCTTCGTTATCAGATGAACTTGGCAGAGCCTaGTCCCAATGGTCTTCTTTCCAAGCTTTCCTAGAA | + |
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Preference number: 6 (lower is better) Translates to: SDASLSDELGRA*SQWSSFQAFLE Trigger: TTCTAGGAAAGCTTGGAAAGAAGACCATTGGGAGCAGGCTCTGCCAAGTTCATCTGATAACGAAGCATCTGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018841.3 |
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| CDS CCA 72 bp | ATTGGGTTTCGCCCCATTTACTATATGTCTCGTGTCTaGGTACTGGAAAAGCAACTCTTCCTGAAGATCCAC | + |
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Preference number: 6 (lower is better) Translates to: IGFRPIYYMSRV*VLEKQLFLKIH Trigger: GTGGATCTTCAGGAAGAGTTGCTTTTCCAGTACCCAGACACGAGACATATAGTAAATGGGGCGAAACCCAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018841.3 |
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| CDS CAA 72 bp | CCTTTGCTGGCTTTTCTATCTACCTTCTTGCGGATTTaGCTTCGTAGTTTCTGGATTGCAAGCCACTGCCTT | + |
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Preference number: 6 (lower is better) Translates to: PLLAFLSTFLRI*LRSFWIASHCL Trigger: AAGGCAGTGGCTTGCAATCCAGAAACTACGAAGCAAAATCCGCAAGAAGGTAGATAGAAAAGCCAGCAAAGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018841.3 |
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| CDS TCA 72 bp | TCTGTGTCCTCCGAAGCAATCTTTCTTTGTCCATCATaGTATGATCGATCTGAGTCAAGATCGAGCGTTCGA | + |
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Preference number: 6 (lower is better) Translates to: SVSSEAIFLCPS*YDRSESRSSVR Trigger: TCGAACGCTCGATCTTGACTCAGATCGATCATATCATGATGGACAAAGAAAGATTGCTTCGGAGGACACAGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018841.3 |
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| CDS TCA 72 bp | GATCATTTGGATCCAAAGAGCTGGTTTTCCGCTCTATaGGTTCTCGAAGGAGCTGGTGGTAAAAGTCATCAT | + |
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Preference number: 6 (lower is better) Translates to: DHLDPKSWFSAL*VLEGAGGKSHH Trigger: ATGATGACTTTTACCACCAGCTCCTTCGAGAACTCATAGAGCGGAAAACCAGCTCTTTGGATCCAAATGATC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018841.3 |
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| CDS CCA 72 bp | TGCTTTGTGACTATTTTTCAGAGCACTGGCAAATTCTaGGCCACCTTTGTCCTTGAAGACAGGGAAAACATC | + |
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Preference number: 6 (lower is better) Translates to: CFVTIFQSTGKF*ATFVLEDRENI Trigger: GATGTTTTCCCTGTCTTCAAGGACAAAGGTGGCCCAGAATTTGCCAGTGCTCTGAAAAATAGTCACAAAGCA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000018841.3 |
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| CDS CAA 72 bp | AGCTTGCTAAGGACATGGAACCGAAGTTTCCTTCCTTaGCTGGCTTTTCTATCTACCTTCTTGCGGATTTTG | + |
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Preference number: 6 (lower is better) Translates to: SLLRTWNRSFLP*LAFLSTFLRIL Trigger: CAAAATCCGCAAGAAGGTAGATAGAAAAGCCAGCAAAGGAAGGAAACTTCGGTTCCATGTCCTTAGCAAGCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018841.3 |
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| CDS CAA 72 bp | TCATCATCTTCACTGGAAATCTCCTCACTCTCTGTATaGGGTTTCGCCCCATTTACTATATGTCTCGTGTCT | + |
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Preference number: 6 (lower is better) Translates to: SSSSLEISSLSV*GFAPFTICLVS Trigger: AGACACGAGACATATAGTAAATGGGGCGAAACCCAATACAGAGAGTGAGGAGATTTCCAGTGAAGATGATGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018841.3 |
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| CDS CAA 72 bp | AGTTTCCTTCCTTTGCTGGCTTTTCTATCTACCTTCTaGCGGATTTTGCTTCGTAGTTTCTGGATTGCAAGC | + |
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Preference number: 6 (lower is better) Translates to: SFLPLLAFLSTF*RILLRSFWIAS Trigger: GCTTGCAATCCAGAAACTACGAAGCAAAATCCGCAAGAAGGTAGATAGAAAAGCCAGCAAAGGAAGGAAACT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018841.3 |
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| CDS CAA 72 bp | TCCCCATCTTCAGATCCTCCCTCATCAGATATTTTGTaGTCTTCTAAGTCTTCGTCAACATCTTCTGAGATC | + |
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Preference number: 6 (lower is better) Translates to: SPSSDPPSSDIL*SSKSSSTSSEI Trigger: GATCTCAGAAGATGTTGACGAAGACTTAGAAGACAACAAAATATCTGATGAGGGAGGATCTGAAGATGGGGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018841.3 |
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