Pregenerated sensors for AARSD1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000075528Ensembl transcript IDs: ENSMUST00000070395.9
Found 17 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | CCACCCGGACCTGGACTTGACTCCCAGGGGACAGAGGTGACTCCGTaGAGTGATCGGCCTGGGCCCCACGACGGGTCACCCTCAGCACAG | + |
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Preference number: 5 (lower is better) Translates to: PPGPGLDSQGTEVTP*SDRPGPHDGSPSAQ Trigger: CTGTGCTGAGGGTGACCCGTCGTGGGGCCCAGGCCGATCACTTCACGGAGTCACCTCTGTCCCCTGGGAGTCAAGTCCAGGTCCGGGTGG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000070395.9 |
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| CDS TCA 90 bp | CTCCCAGTCCACCCGGACCTGGACTTGACTCCCAGGGGACAGAGGTaGCTCCGTGAAGTGATCGGCCTGGGCCCCACGACGGGTCACCCT | + |
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Preference number: 5 (lower is better) Translates to: LPVHPDLDLTPRGQR*LREVIGLGPTTGHP Trigger: AGGGTGACCCGTCGTGGGGCCCAGGCCGATCACTTCACGGAGTCACCTCTGTCCCCTGGGAGTCAAGTCCAGGTCCGGGTGGACTGGGAG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000070395.9 |
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| CDS GCA 90 bp | TGGAATCCGCTCAACACTTCTTTCTTGCCGCCGCTCGCGTCCGTCTaGAGCTCGGCGGGACTACAGGAGACCACGGTGGTGGTGAACTCC | + |
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Preference number: 5 (lower is better) Translates to: WNPLNTSFLPPLASV*SSAGLQETTVVVNS Trigger: GGAGTTCACCACCACCGTGGTCTCCTGTAGTCCCGCCGAGCTGCAGACGGACGCGAGCGGCGGCAAGAAAGAAGTGTTGAGCGGATTCCA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070395.9 |
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| CDS GCA 90 bp | GCGTGTCTTCCAGAACCACATGGAATCCGCTCAACACTTCTTTCTTaGCGCCGCTCGCGTCCGTCTGCAGCTCGGCGGGACTACAGGAGA | + |
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Preference number: 5 (lower is better) Translates to: ACLPEPHGIRSTLLS*RRSRPSAARRDYRR Trigger: TCTCCTGTAGTCCCGCCGAGCTGCAGACGGACGCGAGCGGCGGCAAGAAAGAAGTGTTGAGCGGATTCCATGTGGTTCTGGAAGACACGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070395.9 |
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| CDS TCA 90 bp | AGGCTCAGCTCTCGAACACTCACAGGCAGCCGGTCTCTGATTTTCTaGTTGACACTCTGCTCGATAGCAGCCACCTGCTCAGCAGTCACA | + |
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Preference number: 5 (lower is better) Translates to: RLSSRTLTGSRSLIF*LTLCSIAATCSAVT Trigger: TGTGACTGCTGAGCAGGTGGCTGCTATCGAGCAGAGTGTCAATCAGAAAATCAGAGACCGGCTGCCTGTGAGTGTTCGAGAGCTGAGCCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070395.9 |
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| CDS CCA 72 bp | GCAGAAGCGCCTGCGCCTCTGCCCGGCGGCTCATCTTaGTGGCTTTGCCCTGGAAGCGGCCCTTCTTCCCTG | + |
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Preference number: 6 (lower is better) Translates to: AEAPAPLPGGSS*WLCPGSGPSSL Trigger: CAGGGAAGAAGGGCCGCTTCCAGGGCAAAGCCACCAAGATGAGCCGCCGGGCAGAGGCGCAGGCGCTTCTGC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070395.9 |
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| CDS TCA 72 bp | CCTGGACTTGACTCCCAGGGGACAGAGGTGACTCCGTaGAGTGATCGGCCTGGGCCCCACGACGGGTCACCC | + |
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Preference number: 6 (lower is better) Translates to: PGLDSQGTEVTP*SDRPGPHDGSP Trigger: GGGTGACCCGTCGTGGGGCCCAGGCCGATCACTTCACGGAGTCACCTCTGTCCCCTGGGAGTCAAGTCCAGG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000070395.9 |
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| CDS TCA 72 bp | CACCCGGACCTGGACTTGACTCCCAGGGGACAGAGGTaGCTCCGTGAAGTGATCGGCCTGGGCCCCACGACG | + |
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Preference number: 6 (lower is better) Translates to: HPDLDLTPRGQR*LREVIGLGPTT Trigger: CGTCGTGGGGCCCAGGCCGATCACTTCACGGAGTCACCTCTGTCCCCTGGGAGTCAAGTCCAGGTCCGGGTG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000070395.9 |
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| CDS CAA 72 bp | TGCAGAAGCGCCTGCGCCTCTGCCCGGCGGCTCATCTaGGTGGCTTTGCCCTGGAAGCGGCCCTTCTTCCCT | + |
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Preference number: 6 (lower is better) Translates to: CRSACASARRLI*VALPWKRPFFP Trigger: AGGGAAGAAGGGCCGCTTCCAGGGCAAAGCCACCAAGATGAGCCGCCGGGCAGAGGCGCAGGCGCTTCTGCA 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070395.9 |
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| CDS TCA 72 bp | GCAGCTCGGCGGGACTACAGGAGACCACGGTGGTGGTaGACTCCCGTGCGTAGCTGTCGCGCTGACACAGGA | + |
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Preference number: 6 (lower is better) Translates to: AARRDYRRPRWW*TPVRSCRADTG Trigger: TCCTGTGTCAGCGCGACAGCTACGCACGGGAGTTCACCACCACCGTGGTCTCCTGTAGTCCCGCCGAGCTGC 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070395.9 |
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| CDS GCA 72 bp | CTCAACACTTCTTTCTTGCCGCCGCTCGCGTCCGTCTaGAGCTCGGCGGGACTACAGGAGACCACGGTGGTG | + |
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Preference number: 6 (lower is better) Translates to: LNTSFLPPLASV*SSAGLQETTVV Trigger: CACCACCGTGGTCTCCTGTAGTCCCGCCGAGCTGCAGACGGACGCGAGCGGCGGCAAGAAAGAAGTGTTGAG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070395.9 |
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| CDS GCA 72 bp | CCAGAACCACATGGAATCCGCTCAACACTTCTTTCTTaGCGCCGCTCGCGTCCGTCTGCAGCTCGGCGGGAC | + |
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Preference number: 6 (lower is better) Translates to: PEPHGIRSTLLS*RRSRPSAARRD Trigger: GTCCCGCCGAGCTGCAGACGGACGCGAGCGGCGGCAAGAAAGAAGTGTTGAGCGGATTCCATGTGGTTCTGG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070395.9 |
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| CDS GCA 72 bp | TGTGCTGACATAGTCCTGCAGAAGCGCCTGCGCCTCTaGCCGGCGGCTCATCTTGGTGGCTTTGCCCTGGAA | + |
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Preference number: 6 (lower is better) Translates to: CADIVLQKRLRL*PAAHLGGFALE Trigger: TTCCAGGGCAAAGCCACCAAGATGAGCCGCCGGGCAGAGGCGCAGGCGCTTCTGCAGGACTATGTCAGCACA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070395.9 |
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| CDS CAA 90 bp | AGCGTGTCTTCCAGAACCACATGGAATCCGCTCAACACTTCTTTCTaGCCGCCGCTCGCGTCCGTCTGCAGCTCGGCGGGACTACAGGAG | + |
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Preference number: 6 (lower is better) Translates to: SVSSRTTWNPLNTSF*PPLASVCSSAGLQE Trigger: CTCCTGTAGTCCCGCCGAGCTGCAGACGGACGCGAGCGGCGGCAAGAAAGAAGTGTTGAGCGGATTCCATGTGGTTCTGGAAGACACGCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070395.9 |
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| CDS CCA 72 bp | CCCTCGGGGAAAAGCAGCGTGTCTTCCAGAACCACATaGAATCCGCTCAACACTTCTTTCTTGCCGCCGCTC | + |
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Preference number: 6 (lower is better) Translates to: PSGKSSVSSRTT*NPLNTSFLPPL Trigger: GAGCGGCGGCAAGAAAGAAGTGTTGAGCGGATTCCATGTGGTTCTGGAAGACACGCTGCTTTTCCCCGAGGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000070395.9 |
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| CDS TCA 72 bp | TCTCGAACACTCACAGGCAGCCGGTCTCTGATTTTCTaGTTGACACTCTGCTCGATAGCAGCCACCTGCTCA | + |
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Preference number: 6 (lower is better) Translates to: SRTLTGSRSLIF*LTLCSIAATCS Trigger: TGAGCAGGTGGCTGCTATCGAGCAGAGTGTCAATCAGAAAATCAGAGACCGGCTGCCTGTGAGTGTTCGAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070395.9 |
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| CDS TCA 72 bp | CACTTAAGTAGTGAGGTCAAGGCCTTTTCACTTCCATaGCTTCGCTCCATCCACTTCAGTACCCGATTCCCA | + |
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Preference number: 6 (lower is better) Translates to: HLSSEVKAFSLP*LRSIHFSTRFP Trigger: TGGGAATCGGGTACTGAAGTGGATGGAGCGAAGTCATGGAAGTGAAAAGGCCTTGACCTCACTACTTAAGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070395.9 |
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