RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for AARS (Mus musculus)

Ensembl gene IDs: ENSMUSG00000031960

Ensembl transcript IDs: ENSMUST00000034441.8

Found 243 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CGCACAGCACCTTGGTCCCGCCCGCCTCCAGGTAGGCGGAGCCCTTaGCCTGGCTCAGCAGCCCGGCGCGCGCGTACACCGGGCGGAGCC +
Preference number: 1 (lower is better)
Translates to: RTAPWSRPPPGRRSP*PGSAARRARTPGGA
Trigger: GGCTCCGCCCGGTGTACGCGCGCGCCGGGCTGCTGAGCCAGGCCAAGGGCTCCGCCTACCTGGAGGCGGGCGGGACCAAGGTGCTGTGCG
77% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
3UTR GCA 90 bp CGGCCGCGTACAGCTGCGGCGGCTGAGACTCCTCCGGCCCGCGGATaGGGCGATGGTCTCCCGGCATGGCGGCTACCGGCGTGCGAGCTA +
Preference number: 1 (lower is better)
Translates to: RPRTAAAAETPPARG*GDGLPAWRLPACEL
Trigger: TAGCTCGCACGCCGGTAGCCGCCATGCCGGGAGACCATCGCCGCATCCGCGGGCCGGAGGAGTCTCAGCCGCCGCAGCTGTACGCGGCCG
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
3UTR CCA 90 bp GCTGAGACTCCTCCGGCCCGCGGATGCGGCGATGGTCTCCCGGCATaGCGGCTACCGGCGTGCGAGCTACTTCCGCCTGCTGGGCTGCCC +
Preference number: 1 (lower is better)
Translates to: AETPPARGCGDGLPA*RLPACELLPPAGLP
Trigger: GGGCAGCCCAGCAGGCGGAAGTAGCTCGCACGCCGGTAGCCGCCATGCCGGGAGACCATCGCCGCATCCGCGGGCCGGAGGAGTCTCAGC
73% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
3UTR GCA 90 bp GGCGGCTACCGGCGTGCGAGCTACTTCCGCCTGCTGGGCTGCCCTTaGGCACCCGGCTCTTCCGCTCGCTTAAAGATGCGCGCCCGCGCA +
Preference number: 1 (lower is better)
Translates to: GGYRRASYFRLLGCP*APGSSARLKMRARA
Trigger: TGCGCGGGCGCGCATCTTTAAGCGAGCGGAAGAGCCGGGTGCGCAAGGGCAGCCCAGCAGGCGGAAGTAGCTCGCACGCCGGTAGCCGCC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
3UTR GCA 90 bp CGGCATGGCGGCTACCGGCGTGCGAGCTACTTCCGCCTGCTGGGCTaGCCTTGCGCACCCGGCTCTTCCGCTCGCTTAAAGATGCGCGCC +
Preference number: 1 (lower is better)
Translates to: RHGGYRRASYFRLLG*PCAPGSSARLKMRA
Trigger: GGCGCGCATCTTTAAGCGAGCGGAAGAGCCGGGTGCGCAAGGGCAGCCCAGCAGGCGGAAGTAGCTCGCACGCCGGTAGCCGCCATGCCG
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
3UTR TCA 90 bp CTCTCAGTCTGCCCGCCTTCCCCACTGCCCAGTAACCCGGCCACCTaGTTGAGCACAGGCATGAGGGCCACCGTGAGACCGGCCGCGGAG +
Preference number: 1 (lower is better)
Translates to: LSVCPPSPLPSNPAT*LSTGMRATVRPAAE
Trigger: CTCCGCGGCCGGTCTCACGGTGGCCCTCATGCCTGTGCTCAATCAGGTGGCCGGGTTACTGGGCAGTGGGGAAGGCGGGCAGACTGAGAG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
3UTR CCA 90 bp GGACGGACAGGGCTGCTGAGAGGTCCCATGACTCCAATGTCTTCGTaGCGGGAGGAGAGCTCCTGGCTGAATTCCCGCCTTCGGACATGT +
Preference number: 1 (lower is better)
Translates to: GRTGLLRGPMTPMSS*REESSWLNSRLRTC
Trigger: ACATGTCCGAAGGCGGGAATTCAGCCAGGAGCTCTCCTCCCGCCACGAAGACATTGGAGTCATGGGACCTCTCAGCAGCCCTGTCCGTCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
3UTR-3UTR GCA 90 bp CCTCCTGTAGCGCCAGTCCCAGCTCGCGATCCTCCCCGCCGCCGCCCTGGGGCGCGAGCTACTTCCGCCTaGTGGGCTGCCCTTGCGCAC +
Preference number: 2 (lower is better)
Translates to: PPVAPVPARDPPRRRPGARATSA*WAALAH
Trigger: GTGCGCAAGGGCAGCCCAGCAGGCGGAAGTAGCTCG...CGCCCCAGGGCGGCGGCGGGGAGGATCGCGAGCTGGGACTGGCGCTACAGGAGG
73% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
3UTR-3UTR TCA 90 bp CCTCCTGTAGCGCCAGTCCCAGCTCGCGATCCTCCCCGCCGCCGCCCTGGGGCGTTAGACAGATGGTGCTaGCATGAATGGGCTCAGAGC +
Preference number: 2 (lower is better)
Translates to: PPVAPVPARDPPRRRPGALDRWC*HEWAQS
Trigger: GCTCTGAGCCCATTCATGTCAGCACCATCTGTCTAA...CGCCCCAGGGCGGCGGCGGGGAGGATCGCGAGCTGGGACTGGCGCTACAGGAGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
3UTR-3UTR CCA 90 bp TGTGCGCCCAACTGCCCCACTCTTCGTTTCTCAGCTCTGCGGAGTCAGGCGACCGCTACTTCCGCCTGCTaGGCTGCCCTTGCGCACCCG +
Preference number: 2 (lower is better)
Translates to: CAPNCPTLRFSALRSQATATSAC*AALAHP
Trigger: CGGGTGCGCAAGGGCAGCCCAGCAGGCGGAAGTAGC...GGTCGCCTGACTCCGCAGAGCTGAGAAACGAAGAGTGGGGCAGTTGGGCGCACA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
3UTR-3UTR TCA 90 bp GGTAGGCGGAGCCCTTGGCCTGGCTCAGCAGCCCGGCGCGCGCGTACACCGGGCATATTTCTAACACTCTaGGGAACTGTCATAAGCAGA +
Preference number: 2 (lower is better)
Translates to: GRRSPWPGSAARRARTPGIFLTL*GTVISR
Trigger: TCTGCTTATGACAGTTCCTCAGAGTGTTAGAAATAT...GCCCGGTGTACGCGCGCGCCGGGCTGCTGAGCCAGGCCAAGGGCTCCGCCTACC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
3UTR-3UTR CCA 90 bp ACTCTGAGTAGTGAGAAGGCAAAGTCCCCTGGTCCATCCTCTCAAAAGAATCAGCGGCGCACAGCACCTTaGTCCCGCCCGCCTCCAGGT +
Preference number: 2 (lower is better)
Translates to: TLSSEKAKSPGPSSQKNQRRTAP*SRPPPG
Trigger: ACCTGGAGGCGGGCGGGACCAAGGTGCTGTGCGCCG...CTGATTCTTTTGAGAGGATGGACCAGGGGACTTTGCCTTCTCACTACTCAGAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
3UTR-3UTR CCA 90 bp CTGAGGAACTGTCATAAGCAGACAGTATCTCTGCTTCCAGACCCTGCTGTTTGTCGGGAGGAGAGCTCCTaGCTGAATTCCCGCCTTCGG +
Preference number: 2 (lower is better)
Translates to: LRNCHKQTVSLLPDPAVCREESS*LNSRLR
Trigger: CCGAAGGCGGGAATTCAGCCAGGAGCTCTCCTCCCG...ACAAACAGCAGGGTCTGGAAGCAGAGATACTGTCTGCTTATGACAGTTCCTCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
3UTR-3UTR GCA 90 bp TGTGCGCCCAACTGCCCCACTCTTCGTTTCTCAGCTCTGCGGAGTCAGGCGACCGACATCACCAAGTATTaGACATGGTCCTTTTTATTT +
Preference number: 2 (lower is better)
Translates to: CAPNCPTLRFSALRSQATDITKY*TWSFLF
Trigger: AAATAAAAAGGACCATGTGCAATACTTGGTGATGTC...GGTCGCCTGACTCCGCAGAGCTGAGAAACGAAGAGTGGGGCAGTTGGGCGCACA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
3UTR-3UTR GCA 90 bp GGCAAAGTCCCCTGGTCCATCCTCTCAAAAGAATCAGTTTATTATGTATTGGAGGTCCAACTCTCAGTCTaGCCGCCTTCCCCACTGCCC +
Preference number: 2 (lower is better)
Translates to: GKVPWSILSKESVYYVLEVQLSV*PPSPLP
Trigger: GGGCAGTGGGGAAGGCGGGCAGACTGAGAGTTGGAC...CTCCAATACATAATAAACTGATTCTTTTGAGAGGATGGACCAGGGGACTTTGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
3UTR-3UTR GCA 90 bp AAGTCCTTTCCAACTTGGGAGTATGGCTGCTTTCAAATCTCTCCAACTGGATCGTGGTTGATGGCGAGTTaGTTTCCCGAGAGGGCTTCC +
Preference number: 2 (lower is better)
Translates to: KSFPTWEYGCFQISPTGSWLMAS*FPERAS
Trigger: GGAAGCCCTCTCGGGAAAGCAACTCGCCATCAACCA...CGATCCAGTTGGAGAGATTTGAAAGCAGCCATACTCCCAAGTTGGAAAGGACTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
3UTR-3UTR GCA 90 bp AAGTCCTTTCCAACTTGGGAGTATGGCTGCTTTCAAATCTCTCCAACTGGATCGAAGGCTTCCTTCCTCTaGAGACCTAAAGCCTCAGGC +
Preference number: 2 (lower is better)
Translates to: KSFPTWEYGCFQISPTGSKASFL*RPKASG
Trigger: GCCTGAGGCTTTAGGTCTGCAGAGGAAGGAAGCCTT...CGATCCAGTTGGAGAGATTTGAAAGCAGCCATACTCCCAAGTTGGAAAGGACTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
3UTR-3UTR GCA 90 bp AAGTCCTTTCCAACTTGGGAGTATGGCTGCTTTCAAATCTCTCCAACTGGATCGAGCAGACAGTATCTCTaGTTCCAGACCCTGCTGTTT +
Preference number: 2 (lower is better)
Translates to: KSFPTWEYGCFQISPTGSSRQYL*FQTLLF
Trigger: AAACAGCAGGGTCTGGAAGCAGAGATACTGTCTGCT...CGATCCAGTTGGAGAGATTTGAAAGCAGCCATACTCCCAAGTTGGAAAGGACTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
3UTR-3UTR CCA 90 bp ACTCTGAGTAGTGAGAAGGCAAAGTCCCCTGGTCCATCCTCTCAAAAGAATCAGACAGTGGTTCTCCACTaGAAGCAACTCAGAATTATT +
Preference number: 2 (lower is better)
Translates to: TLSSEKAKSPGPSSQKNQTVVLH*KQLRII
Trigger: AATAATTCTGAGTTGCTTCCAGTGGAGAACCACTGT...CTGATTCTTTTGAGAGGATGGACCAGGGGACTTTGCCTTCTCACTACTCAGAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
3UTR CAA 90 bp GGTTTTTGTTTACTCGTGCAATTAGTCCTCTGGCTGCTTCAACACTaGTTTAATAAATGGACGGTATCTCTCTTTGTACAACTAGATATT +
Preference number: 2 (lower is better)
Translates to: GFCLLVQLVLWLLQH*FNKWTVSLFVQLDI
Trigger: AATATCTAGTTGTACAAAGAGAGATACCGTCCATTTATTAAACAAGTGTTGAAGCAGCCAGAGGACTAATTGCACGAGTAAACAAAAACC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
3UTR-3UTR CAA 90 bp TGTAGCGCCAGTCCCAGCTCGCGATCCTCCCCGCCGCCGCCCTGGGGCGCGCGAACGGCGCACAGCACCTaGGTCCCGCCCGCCTCCAGG +
Preference number: 3 (lower is better)
Translates to: CSASPSSRSSPPPPWGARTAHST*VPPASR
Trigger: CCTGGAGGCGGGCGGGACCAAGGTGCTGTGCGCCGT...TCGCGCGCCCCAGGGCGGCGGCGGGGAGGATCGCGAGCTGGGACTGGCGCTACA
77% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
3UTR CCA 72 bp CCTTGGTCCCGCCCGCCTCCAGGTAGGCGGAGCCCTTaGCCTGGCTCAGCAGCCCGGCGCGCGCGTACACCG +
Preference number: 3 (lower is better)
Translates to: PWSRPPPGRRSP*PGSAARRARTP
Trigger: CGGTGTACGCGCGCGCCGGGCTGCTGAGCCAGGCCAAGGGCTCCGCCTACCTGGAGGCGGGCGGGACCAAGG
76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
3UTR CCA 72 bp CGGCCTGCCGCGGACCGGACACGGCGCACAGCACCTTaGTCCCGCCCGCCTCCAGGTAGGCGGAGCCCTTGG +
Preference number: 3 (lower is better)
Translates to: RPAADRTRRTAP*SRPPPGRRSPW
Trigger: CCAAGGGCTCCGCCTACCTGGAGGCGGGCGGGACCAAGGTGCTGTGCGCCGTGTCCGGTCCGCGGCAGGCCG
76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
3UTR GCA 72 bp ACAGCTGCGGCGGCTGAGACTCCTCCGGCCCGCGGATaGGGCGATGGTCTCCCGGCATGGCGGCTACCGGCG +
Preference number: 3 (lower is better)
Translates to: TAAAAETPPARG*GDGLPAWRLPA
Trigger: CGCCGGTAGCCGCCATGCCGGGAGACCATCGCCGCATCCGCGGGCCGGAGGAGTCTCAGCCGCCGCAGCTGT
75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
3UTR CCA 72 bp CCTCCGGCCCGCGGATGCGGCGATGGTCTCCCGGCATaGCGGCTACCGGCGTGCGAGCTACTTCCGCCTGCT +
Preference number: 3 (lower is better)
Translates to: PPARGCGDGLPA*RLPACELLPPA
Trigger: AGCAGGCGGAAGTAGCTCGCACGCCGGTAGCCGCCATGCCGGGAGACCATCGCCGCATCCGCGGGCCGGAGG
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
3UTR GCA 72 bp TGCGGCGATGGTCTCCCGGCATGGCGGCTACCGGCGTaGGAGCTACTTCCGCCTGCTGGGCTGCCCTTGCGC +
Preference number: 3 (lower is better)
Translates to: CGDGLPAWRLPA*ELLPPAGLPLR
Trigger: GCGCAAGGGCAGCCCAGCAGGCGGAAGTAGCTCGCACGCCGGTAGCCGCCATGCCGGGAGACCATCGCCGCA
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
3UTR-3UTR CAA 90 bp GAGCCCTTGGCCTGGCTCAGCAGCCCGGCGCGCGCGTACACCGGGCGGAGCCGCTACTGCCTATATCAGTaGTCTGACCTCATATCAGCA +
Preference number: 3 (lower is better)
Translates to: EPLAWLSSPARAYTGRSRYCLYQ*SDLISA
Trigger: TGCTGATATGAGGTCAGACAACTGATATAGGCAGTA...GCGGCTCCGCCCGGTGTACGCGCGCGCCGGGCTGCTGAGCCAGGCCAAGGGCTC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
3UTR-3UTR CAA 90 bp GGTAGGCGGAGCCCTTGGCCTGGCTCAGCAGCCCGGCGCGCGCGTACACCGGGCTCCTCCACCCTTCTATaGAATTTCCTGAACTTTCAG +
Preference number: 3 (lower is better)
Translates to: GRRSPWPGSAARRARTPGSSTLL*NFLNFQ
Trigger: CTGAAAGTTCAGGAAATTCAATAGAAGGGTGGAGGA...GCCCGGTGTACGCGCGCGCCGGGCTGCTGAGCCAGGCCAAGGGCTCCGCCTACC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
3UTR CCA 72 bp GGGCTGCTGAGAGGTCCCATGACTCCAATGTCTTCGTaGCGGGAGGAGAGCTCCTGGCTGAATTCCCGCCTT +
Preference number: 3 (lower is better)
Translates to: GLLRGPMTPMSS*REESSWLNSRL
Trigger: AAGGCGGGAATTCAGCCAGGAGCTCTCCTCCCGCCACGAAGACATTGGAGTCATGGGACCTCTCAGCAGCCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
3UTR-3UTR CAA 90 bp ACTCCTCCGGCCCGCGGATGCGGCGATGGTCTCCCGGCATGGCGGCTACCGGCGGTTATTCCTAGAAGTTaGCATTCAGACTGTTTCACA +
Preference number: 3 (lower is better)
Translates to: TPPARGCGDGLPAWRLPAVIPRS*HSDCFT
Trigger: TGTGAAACAGTCTGAATGCAAACTTCTAGGAATAAC...CGCCGGTAGCCGCCATGCCGGGAGACCATCGCCGCATCCGCGGGCCGGAGGAGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
3UTR TCA 72 bp CTCCTGGCTGAATTCCCGCCTTCGGACATGTCTGGTTaGTGGCGAGTTGCTTTCCCGAGAGGGCTTCCCTCC +
Preference number: 3 (lower is better)
Translates to: LLAEFPPSDMSG*WRVAFPRGLPS
Trigger: GGAGGGAAGCCCTCTCGGGAAAGCAACTCGCCATCAACCAGACATGTCCGAAGGCGGGAATTCAGCCAGGAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
3UTR CCA 72 bp ATGACTCCAATGTCTTCGTGGCGGGAGGAGAGCTCCTaGCTGAATTCCCGCCTTCGGACATGTCTGGTTGAT +
Preference number: 3 (lower is better)
Translates to: MTPMSSWREESS*LNSRLRTCLVD
Trigger: ATCAACCAGACATGTCCGAAGGCGGGAATTCAGCCAGGAGCTCTCCTCCCGCCACGAAGACATTGGAGTCAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
3UTR-3UTR CAA 90 bp TTGGTTCTGTGCGCCCAACTGCCCCACTCTTCGTTTCTCAGCTCTGCGGAGTCACAAGGTGAGAGGTTTTaGTTTACTCGTGCAATTAGT +
Preference number: 3 (lower is better)
Translates to: LVLCAQLPHSSFLSSAESQGERF*FTRAIS
Trigger: ACTAATTGCACGAGTAAACAAAAACCTCTCACCTTG...TGACTCCGCAGAGCTGAGAAACGAAGAGTGGGGCAGTTGGGCGCACAGAACCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
3UTR TCA 72 bp TTTCCTGAACTTTCAGGAGTCTGGGAGTCTATTCGGTaGTACCATCAACCAGAAACAGGCTGGAACCGTAAC +
Preference number: 3 (lower is better)
Translates to: FPELSGVWESIR*YHQPETGWNRN
Trigger: GTTACGGTTCCAGCCTGTTTCTGGTTGATGGTATCACCGAATAGACTCCCAGACTCCTGAAAGTTCAGGAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
3UTR CCA 72 bp GGTTGTCCTAAGAGACTAAGAACAGTGGTTCTCCACTaGAAGCAACTCAGAATTATTTTCCTCCACCCTTCT +
Preference number: 3 (lower is better)
Translates to: GCPKRLRTVVLH*KQLRIIFLHPS
Trigger: AGAAGGGTGGAGGAAAATAATTCTGAGTTGCTTCCAGTGGAGAACCACTGTTCTTAGTCTCTTAGGACAACC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
3UTR CCA 72 bp GTGAGAGGTTTTTGTTTACTCGTGCAATTAGTCCTCTaGCTGCTTCAACACTTGTTTAATAAATGGACGGTA +
Preference number: 3 (lower is better)
Translates to: VRGFCLLVQLVL*LLQHLFNKWTV
Trigger: TACCGTCCATTTATTAAACAAGTGTTGAAGCAGCCAGAGGACTAATTGCACGAGTAAACAAAAACCTCTCAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS-3UTR TCA 90 bp GGTAGGCGGAGCCCTTGGCCTGGCTCAGCAGCCCGGCGCGCGCGTACACCGGGCCTGTGTGGTTGCTCATaGCGGGTCTCCGCCGGGGCT +
Preference number: 4 (lower is better)
Translates to: GRRSPWPGSAARRARTPGLCGCS*RVSAGA
Trigger: AGCCCCGGCGGAGACCCGTCATGAGCAACCACACAG...GCCCGGTGTACGCGCGCGCCGGGCTGCTGAGCCAGGCCAAGGGCTCCGCCTACC
73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS-3UTR TCA 90 bp TGTAGCGCCAGTCCCAGCTCGCGATCCTCCCCGCCGCCGCCCTGGGGCGCGCGATCTGCCACTGGGGGATaGCTGCAGTGGCCAGGGCCT +
Preference number: 4 (lower is better)
Translates to: CSASPSSRSSPPPPWGARSATGG*LQWPGP
Trigger: AGGCCCTGGCCACTGCAGTCATCCCCCAGTGGCAGA...TCGCGCGCCCCAGGGCGGCGGCGGGGAGGATCGCGAGCTGGGACTGGCGCTACA
73% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS-3UTR GCA 90 bp ACTCCTCCGGCCCGCGGATGCGGCGATGGTCTCCCGGCATGGCGGCTACCGGCGCGTCCCCTGCTCCCTTaGCCTGTGACTTCAGCTGGG +
Preference number: 4 (lower is better)
Translates to: TPPARGCGDGLPAWRLPARPLLP*PVTSAG
Trigger: CCCAGCTGAAGTCACAGGGCAAGGGAGCAGGGGACG...CGCCGGTAGCCGCCATGCCGGGAGACCATCGCCGCATCCGCGGGCCGGAGGAGT
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS-3UTR GCA 90 bp GCGTCGGGTCGCGAGCAGCGGGCGTCTCGTCGTCTTCGGCCGCGTACAGCTGCGCCACTGGGGGATGACTaGAGTGGCCAGGGCCTCACC +
Preference number: 4 (lower is better)
Translates to: ASGREQRASRRLRPRTAAPLGDD*SGQGLT
Trigger: GGTGAGGCCCTGGCCACTGCAGTCATCCCCCAGTGG...CGCAGCTGTACGCGGCCGAAGACGACGAGACGCCCGCTGCTCGCGACCCGACGC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS-3UTR GCA 90 bp CCTCCTGTAGCGCCAGTCCCAGCTCGCGATCCTCCCCGCCGCCGCCCTGGGGCGCAGGGCCTTGGCCGATaGTCCACTCTCCATCTCCAG +
Preference number: 4 (lower is better)
Translates to: PPVAPVPARDPPRRRPGAQGLGR*STLHLQ
Trigger: CTGGAGATGGAGAGTGGAGCATCGGCCAAGGCCCTG...CGCCCCAGGGCGGCGGCGGGGAGGATCGCGAGCTGGGACTGGCGCTACAGGAGG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS-3UTR TCA 90 bp GGTAGGCGGAGCCCTTGGCCTGGCTCAGCAGCCCGGCGCGCGCGTACACCGGGCTGGCTCCCTTGGCAGTaGAGTCAAACCGAAGGCGGT +
Preference number: 4 (lower is better)
Translates to: GRRSPWPGSAARRARTPGWLPWQ*SQTEGG
Trigger: ACCGCCTTCGGTTTGACTTCACTGCCAAGGGAGCCA...GCCCGGTGTACGCGCGCGCCGGGCTGCTGAGCCAGGCCAAGGGCTCCGCCTACC
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS-3UTR TCA 90 bp GAGCCCTTGGCCTGGCTCAGCAGCCCGGCGCGCGCGTACACCGGGCGGAGCCGCCCTGGCACAAGCACGTaGTCTTGCCAGCCTCATTGT +
Preference number: 4 (lower is better)
Translates to: EPLAWLSSPARAYTGRSRPGTST*SCQPHC
Trigger: ACAATGAGGCTGGCAAGATCACGTGCTTGTGCCAGG...GCGGCTCCGCCCGGTGTACGCGCGCGCCGGGCTGCTGAGCCAGGCCAAGGGCTC
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS-3UTR GCA 90 bp TGTAGCGCCAGTCCCAGCTCGCGATCCTCCCCGCCGCCGCCCTGGGGCGCGCGAGCCCTGGATGGCTTTTaGTGCTGCCAGGGGACAATC +
Preference number: 4 (lower is better)
Translates to: CSASPSSRSSPPPPWGARALDGF*CCQGTI
Trigger: GATTGTCCCCTGGCAGCAGCAAAAGCCATCCAGGGC...TCGCGCGCCCCAGGGCGGCGGCGGGGAGGATCGCGAGCTGGGACTGGCGCTACA
70% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS-3UTR GCA 90 bp ACTCCTCCGGCCCGCGGATGCGGCGATGGTCTCCCGGCATGGCGGCTACCGGCGCTGGTTGACAAGGTGTaGGGCGTCCCTGCCACCAAT +
Preference number: 4 (lower is better)
Translates to: TPPARGCGDGLPAWRLPALVDKV*GVPATN
Trigger: ATTGGTGGCAGGGACGCCGCACACCTTGTCAACCAG...CGCCGGTAGCCGCCATGCCGGGAGACCATCGCCGCATCCGCGGGCCGGAGGAGT
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS-3UTR CCA 90 bp GGTAGGCGGAGCCCTTGGCCTGGCTCAGCAGCCCGGCGCGCGCGTACACCGGGCAGGATGACCAGCGGCTaGTTGGGGTTGCTGTCAATC +
Preference number: 4 (lower is better)
Translates to: GRRSPWPGSAARRARTPGRMTSG*LGLLSI
Trigger: GATTGACAGCAACCCCAACCAGCCGCTGGTCATCCT...GCCCGGTGTACGCGCGCGCCGGGCTGCTGAGCCAGGCCAAGGGCTCCGCCTACC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS-3UTR GCA 90 bp ACTCCTCCGGCCCGCGGATGCGGCGATGGTCTCCCGGCATGGCGGCTACCGGCGCTGGATGGCTTTTGCTaGTGCCAGGGGACAATCCTG +
Preference number: 4 (lower is better)
Translates to: TPPARGCGDGLPAWRLPALDGFC*CQGTIL
Trigger: CAGGATTGTCCCCTGGCAGCAGCAAAAGCCATCCAG...CGCCGGTAGCCGCCATGCCGGGAGACCATCGCCGCATCCGCGGGCCGGAGGAGT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS-3UTR CCA 90 bp CCTCCTGTAGCGCCAGTCCCAGCTCGCGATCCTCCCCGCCGCCGCCCTGGGGCGGCTCGGATGCATTTCTaGGTATTGGCAGCTCTGCTC +
Preference number: 4 (lower is better)
Translates to: PPVAPVPARDPPRRRPGAARMHF*VLAALL
Trigger: GAGCAGAGCTGCCAATACCCAGAAATGCATCCGAGC...CGCCCCAGGGCGGCGGCGGGGAGGATCGCGAGCTGGGACTGGCGCTACAGGAGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS-3UTR CCA 90 bp GAGCCCTTGGCCTGGCTCAGCAGCCCGGCGCGCGCGTACACCGGGCGGAGCCGCATGTGTGTAGCTGTGTaGTTGCTCATGACGGGTCTC +
Preference number: 4 (lower is better)
Translates to: EPLAWLSSPARAYTGRSRMCVAV*LLMTGL
Trigger: GAGACCCGTCATGAGCAACCACACAGCTACACACAT...GCGGCTCCGCCCGGTGTACGCGCGCGCCGGGCTGCTGAGCCAGGCCAAGGGCTC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS-3UTR CCA 90 bp CCTCCTGTAGCGCCAGTCCCAGCTCGCGATCCTCCCCGCCGCCGCCCTGGGGCGGCATTCTGGGGAACCTaGCACAAGCACGTGATCTTG +
Preference number: 4 (lower is better)
Translates to: PPVAPVPARDPPRRRPGAAFWGT*HKHVIL
Trigger: CAAGATCACGTGCTTGTGCCAGGTTCCCCAGAATGC...CGCCCCAGGGCGGCGGCGGGGAGGATCGCGAGCTGGGACTGGCGCTACAGGAGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS-3UTR CCA 90 bp ACTCCTCCGGCCCGCGGATGCGGCGATGGTCTCCCGGCATGGCGGCTACCGGCGCTTTCAGTCCCCGGTTaGCTGCATTCTGGGGAACCT +
Preference number: 4 (lower is better)
Translates to: TPPARGCGDGLPAWRLPALSVPG*LHSGEP
Trigger: AGGTTCCCCAGAATGCAGCCAACCGGGGACTGAAAG...CGCCGGTAGCCGCCATGCCGGGAGACCATCGCCGCATCCGCGGGCCGGAGGAGT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
3UTR CAA 72 bp CCGGCGTGCGAGCTACTTCCGCCTGCTGGGCTGCCCTaGCGCACCCGGCTCTTCCGCTCGCTTAAAGATGCG +
Preference number: 4 (lower is better)
Translates to: PACELLPPAGLP*RTRLFRSLKDA
Trigger: CGCATCTTTAAGCGAGCGGAAGAGCCGGGTGCGCAAGGGCAGCCCAGCAGGCGGAAGTAGCTCGCACGCCGG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS-3UTR TCA 90 bp CCTCCTGTAGCGCCAGTCCCAGCTCGCGATCCTCCCCGCCGCCGCCCTGGGGCGTCTCTTCAGCCTTCTTaGTTTGCTGGGTGGACATGG +
Preference number: 4 (lower is better)
Translates to: PPVAPVPARDPPRRRPGASLQPS*FAGWTW
Trigger: CCATGTCCACCCAGCAAATCAAGAAGGCTGAAGAGA...CGCCCCAGGGCGGCGGCGGGGAGGATCGCGAGCTGGGACTGGCGCTACAGGAGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS-3UTR GCA 90 bp TGTAGCGCCAGTCCCAGCTCGCGATCCTCCCCGCCGCCGCCCTGGGGCGCGCGATTGGACATCTTGTTCTaGAGCACAGACACCAGCCTC +
Preference number: 4 (lower is better)
Translates to: CSASPSSRSSPPPPWGARLDILF*STDTSL
Trigger: GAGGCTGGTGTCTGTGCTGCAGAACAAGATGTCCAA...TCGCGCGCCCCAGGGCGGCGGCGGGGAGGATCGCGAGCTGGGACTGGCGCTACA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS-3UTR CCA 90 bp CCTCCTGTAGCGCCAGTCCCAGCTCGCGATCCTCCCCGCCGCCGCCCTGGGGCGCGAAGAAACCCCTGCTaGCATTCAGTTTCTCATGGG +
Preference number: 4 (lower is better)
Translates to: PPVAPVPARDPPRRRPGARRNPC*HSVSHG
Trigger: CCCATGAGAAACTGAATGCCAGCAGGGGTTTCTTCG...CGCCCCAGGGCGGCGGCGGGGAGGATCGCGAGCTGGGACTGGCGCTACAGGAGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS-3UTR CCA 90 bp GCGTCGGGTCGCGAGCAGCGGGCGTCTCGTCGTCTTCGGCCGCGTACAGCTGCGTCTGGGCCTTCACTTTaGCCTCCATGGCAGAGAGAG +
Preference number: 4 (lower is better)
Translates to: ASGREQRASRRLRPRTAASGPSL*PPWQRE
Trigger: CTCTCTCTGCCATGGAGGCCAAAGTGAAGGCCCAGA...CGCAGCTGTACGCGGCCGAAGACGACGAGACGCCCGCTGCTCGCGACCCGACGC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS-3UTR TCA 90 bp GGTAGGCGGAGCCCTTGGCCTGGCTCAGCAGCCCGGCGCGCGCGTACACCGGGCCCCTGTTATACTGGATaGACACGAGGTTCCAGATCT +
Preference number: 4 (lower is better)
Translates to: GRRSPWPGSAARRARTPGPCYTG*TRGSRS
Trigger: AGATCTGGAACCTCGTGTTCATCCAGTATAACAGGG...GCCCGGTGTACGCGCGCGCCGGGCTGCTGAGCCAGGCCAAGGGCTCCGCCTACC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS-3UTR TCA 90 bp CCTCCTGTAGCGCCAGTCCCAGCTCGCGATCCTCCCCGCCGCCGCCCTGGGGCGAGCATGGCAGATGTCTaGGGAGAATGCGTCTTGAAA +
Preference number: 4 (lower is better)
Translates to: PPVAPVPARDPPRRRPGASMADV*GECVLK
Trigger: TTTCAAGACGCATTCTCCTCAGACATCTGCCATGCT...CGCCCCAGGGCGGCGGCGGGGAGGATCGCGAGCTGGGACTGGCGCTACAGGAGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS-3UTR GCA 90 bp CCTCCTGTAGCGCCAGTCCCAGCTCGCGATCCTCCCCGCCGCCGCCCTGGGGCGCACCTGGGATGGTTTTaGAGTCTCCTAAGCTCTGAA +
Preference number: 4 (lower is better)
Translates to: PPVAPVPARDPPRRRPGAHLGWF*SLLSSE
Trigger: TTCAGAGCTTAGGAGACTGCAAAACCATCCCAGGTG...CGCCCCAGGGCGGCGGCGGGGAGGATCGCGAGCTGGGACTGGCGCTACAGGAGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS-3UTR GCA 90 bp GAGCTACTTCCGCCTGCTGGGCTGCCCTTGCGCACCCGGCTCTTCCGCTCGCTTTCATCCAGGTCGTTGTaGTTGCCCCCAGCTCGGATG +
Preference number: 4 (lower is better)
Translates to: ELLPPAGLPLRTRLFRSLSSRSL*LPPARM
Trigger: CATCCGAGCTGGGGGCAAGCACAACGACCTGGATGA...AAGCGAGCGGAAGAGCCGGGTGCGCAAGGGCAGCCCAGCAGGCGGAAGTAGCTC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS-3UTR GCA 90 bp GCGTCGGGTCGCGAGCAGCGGGCGTCTCGTCGTCTTCGGCCGCGTACAGCTGCGCTTCAGCTCAGGAAATaGGTCTCCCAGGGATTGAAC +
Preference number: 4 (lower is better)
Translates to: ASGREQRASRRLRPRTAALQLRK*VSQGLN
Trigger: GTTCAATCCCTGGGAGACGCATTTCCTGAGCTGAAG...CGCAGCTGTACGCGGCCGAAGACGACGAGACGCCCGCTGCTCGCGACCCGACGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS-3UTR CCA 90 bp GCGTCGGGTCGCGAGCAGCGGGCGTCTCGTCGTCTTCGGCCGCGTACAGCTGCGGACTCCCTGTTATACTaGATGAACACGAGGTTCCAG +
Preference number: 4 (lower is better)
Translates to: ASGREQRASRRLRPRTAADSLLY*MNTRFQ
Trigger: CTGGAACCTCGTGTTCATCCAGTATAACAGGGAGTC...CGCAGCTGTACGCGGCCGAAGACGACGAGACGCCCGCTGCTCGCGACCCGACGC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS-3UTR CCA 90 bp ACTCCTCCGGCCCGCGGATGCGGCGATGGTCTCCCGGCATGGCGGCTACCGGCGTCACTTTGGCCTCCATaGCAGAGAGAGATTTCTTCA +
Preference number: 4 (lower is better)
Translates to: TPPARGCGDGLPAWRLPASLWPP*QREISS
Trigger: TGAAGAAATCTCTCTCTGCCATGGAGGCCAAAGTGA...CGCCGGTAGCCGCCATGCCGGGAGACCATCGCCGCATCCGCGGGCCGGAGGAGT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS-3UTR CCA 90 bp CTGTGCGCCCAACTGCCCCACTCTTCGTTTCTCAGCTCTGCGGAGTCAGGCGACGCTGGACCCACTCGCTaGCTTTCAGTCCCCGGTTGG +
Preference number: 4 (lower is better)
Translates to: LCAQLPHSSFLSSAESGDAGPTR*LSVPGW
Trigger: CCAACCGGGGACTGAAAGCCAGCGAGTGGGTCCAGC...GTCGCCTGACTCCGCAGAGCTGAGAAACGAAGAGTGGGGCAGTTGGGCGCACAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS-3UTR TCA 90 bp CCCCACTCTTCGTTTCTCAGCTCTGCGGAGTCAGGCGACCATCAGCGCTTGGTCTGGGGTCATCCTGGTTaGCAAGGTGTGCGGCGTCCC +
Preference number: 4 (lower is better)
Translates to: PHSSFLSSAESGDHQRLVWGHPG*QGVRRP
Trigger: GGGACGCCGCACACCTTGTCAACCAGGATGACCCCA...GACCAAGCGCTGATGGTCGCCTGACTCCGCAGAGCTGAGAAACGAAGAGTGGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS-3UTR CCA 90 bp TGTAGCGCCAGTCCCAGCTCGCGATCCTCCCCGCCGCCGCCCTGGGGCGCGCGATTGGTAGTTATACTTTaGAGAATCATCTGTGGCCTC +
Preference number: 4 (lower is better)
Translates to: CSASPSSRSSPPPPWGARLVVIL*RIICGL
Trigger: GAGGCCACAGATGATTCTCCAAAGTATAACTACCAA...TCGCGCGCCCCAGGGCGGCGGCGGGGAGGATCGCGAGCTGGGACTGGCGCTACA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS-3UTR TCA 90 bp CTGTGCGCCCAACTGCCCCACTCTTCGTTTCTCAGCTCTGCGGAGTCAGGCGACGGGCTTCAGCACCTGTaGCAGCAACAATCCTCCGGA +
Preference number: 4 (lower is better)
Translates to: LCAQLPHSSFLSSAESGDGLQHL*QQQSSG
Trigger: TCCGGAGGATTGTTGCTGTCACAGGTGCTGAAGCCC...GTCGCCTGACTCCGCAGAGCTGAGAAACGAAGAGTGGGGCAGTTGGGCGCACAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS-3UTR GCA 90 bp CCCCACTCTTCGTTTCTCAGCTCTGCGGAGTCAGGCGACCATCAGCGCTTGGTCCGTCCCTGCCACCAATaGGGTCATAGTGGATCTCGC +
Preference number: 4 (lower is better)
Translates to: PHSSFLSSAESGDHQRLVRPCHQ*GHSGSR
Trigger: GCGAGATCCACTATGACCGCATTGGTGGCAGGGACG...GACCAAGCGCTGATGGTCGCCTGACTCCGCAGAGCTGAGAAACGAAGAGTGGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS-3UTR GCA 90 bp GAGCTACTTCCGCCTGCTGGGCTGCCCTTGCGCACCCGGCTCTTCCGCTCGCTTCCATCCCTGTGTCGATaGTTTTCTTGGGAAGAGGTT +
Preference number: 4 (lower is better)
Translates to: ELLPPAGLPLRTRLFRSLPSLCR*FSWEEV
Trigger: AACCTCTTCCCAAGAAAAGCATCGACACAGGGATGG...AAGCGAGCGGAAGAGCCGGGTGCGCAAGGGCAGCCCAGCAGGCGGAAGTAGCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS-3UTR GCA 90 bp TGTGCGCCCAACTGCCCCACTCTTCGTTTCTCAGCTCTGCGGAGTCAGGCGACCGCGGCTGGTTGGGGTTaGTGTCAATCAGCTGCTTTG +
Preference number: 4 (lower is better)
Translates to: CAPNCPTLRFSALRSQATAAGWG*CQSAAL
Trigger: CAAAGCAGCTGATTGACAGCAACCCCAACCAGCCGC...GGTCGCCTGACTCCGCAGAGCTGAGAAACGAAGAGTGGGGCAGTTGGGCGCACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS-3UTR CCA 90 bp GAGCTACTTCCGCCTGCTGGGCTGCCCTTGCGCACCCGGCTCTTCCGCTCGCTTTGCCAGGGAGGATTCTaGCTTCATCCAGTCCTAAAT +
Preference number: 4 (lower is better)
Translates to: ELLPPAGLPLRTRLFRSLCQGGF*LHPVLN
Trigger: ATTTAGGACTGGATGAAGCCAGAATCCTCCCTGGCA...AAGCGAGCGGAAGAGCCGGGTGCGCAAGGGCAGCCCAGCAGGCGGAAGTAGCTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS-3UTR TCA 90 bp CAACAGAGCTGTCCAGTGCTTTGGTTCTGTGCGCCCAACTGCCCCACTCTTCGTTCTCCATCTCCAGGATaGCCAGCGGCTGGTTGGGGT +
Preference number: 4 (lower is better)
Translates to: QQSCPVLWFCAPNCPTLRSPSPG*PAAGWG
Trigger: ACCCCAACCAGCCGCTGGTCATCCTGGAGATGGAGA...ACGAAGAGTGGGGCAGTTGGGCGCACAGAACCAAAGCACTGGACAGCTCTGTTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS-3UTR GCA 90 bp TGTGCGCCCAACTGCCCCACTCTTCGTTTCTCAGCTCTGCGGAGTCAGGCGACCTCAGCCTTCTTGATTTaGTGGGTGGACATGGCTCCC +
Preference number: 4 (lower is better)
Translates to: CAPNCPTLRFSALRSQATSAFLI*WVDMAP
Trigger: GGGAGCCATGTCCACCCAGCAAATCAAGAAGGCTGA...GGTCGCCTGACTCCGCAGAGCTGAGAAACGAAGAGTGGGGCAGTTGGGCGCACA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS-3UTR CCA 90 bp CAACAGAGCTGTCCAGTGCTTTGGTTCTGTGCGCCCAACTGCCCCACTCTTCGTCCACGTTCTTGCCTGTaGCCTGGGCGGACATGTCCT +
Preference number: 4 (lower is better)
Translates to: QQSCPVLWFCAPNCPTLRPRSCL*PGRTCP
Trigger: AGGACATGTCCGCCCAGGCCACAGGCAAGAACGTGG...ACGAAGAGTGGGGCAGTTGGGCGCACAGAACCAAAGCACTGGACAGCTCTGTTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS-3UTR GCA 90 bp CTGTGCGCCCAACTGCCCCACTCTTCGTTTCTCAGCTCTGCGGAGTCAGGCGACCGTTGTTCATCTTTCTaGCACTGGGGGATGACTGCA +
Preference number: 4 (lower is better)
Translates to: LCAQLPHSSFLSSAESGDRCSSF*HWGMTA
Trigger: TGCAGTCATCCCCCAGTGGCAGAAAGATGAACAACG...GTCGCCTGACTCCGCAGAGCTGAGAAACGAAGAGTGGGGCAGTTGGGCGCACAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS-3UTR CCA 90 bp CTGTGCGCCCAACTGCCCCACTCTTCGTTTCTCAGCTCTGCGGAGTCAGGCGACGGAATACCAAACTCCTaGGTAAGAAGTTCCAGGGCC +
Preference number: 4 (lower is better)
Translates to: LCAQLPHSSFLSSAESGDGIPNS*VRSSRA
Trigger: GGCCCTGGAACTTCTTACCCAGGAGTTTGGTATTCC...GTCGCCTGACTCCGCAGAGCTGAGAAACGAAGAGTGGGGCAGTTGGGCGCACAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS-3UTR CCA 90 bp CCCCACTCTTCGTTTCTCAGCTCTGCGGAGTCAGGCGACCATCAGCGCTTGGTCCGGTGTCACCTGGGATaGTTTTGCAGTCTCCTAAGC +
Preference number: 4 (lower is better)
Translates to: PHSSFLSSAESGDHQRLVRCHLG*FCSLLS
Trigger: GCTTAGGAGACTGCAAAACCATCCCAGGTGACACCG...GACCAAGCGCTGATGGTCGCCTGACTCCGCAGAGCTGAGAAACGAAGAGTGGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS-3UTR CCA 90 bp CAACAGAGCTGTCCAGTGCTTTGGTTCTGTGCGCCCAACTGCCCCACTCTTCGTCCCTGTGACTTCAGCTaGGCCAGTCTCCTCTCTTCC +
Preference number: 4 (lower is better)
Translates to: QQSCPVLWFCAPNCPTLRPCDFS*ASLLSS
Trigger: GGAAGAGAGGAGACTGGCCCAGCTGAAGTCACAGGG...ACGAAGAGTGGGGCAGTTGGGCGCACAGAACCAAAGCACTGGACAGCTCTGTTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS-3UTR CCA 90 bp TTGGTTCTGTGCGCCCAACTGCCCCACTCTTCGTTTCTCAGCTCTGCGGAGTCAAGGCCTGAAACCTGCTaGACCCACTCGCTGGCTTTC +
Preference number: 4 (lower is better)
Translates to: LVLCAQLPHSSFLSSAESRPETC*THSLAF
Trigger: GAAAGCCAGCGAGTGGGTCCAGCAGGTTTCAGGCCT...TGACTCCGCAGAGCTGAGAAACGAAGAGTGGGGCAGTTGGGCGCACAGAACCAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS-3UTR TCA 90 bp TGTGCGCCCAACTGCCCCACTCTTCGTTTCTCAGCTCTGCGGAGTCAGGCGACCTTAGGAAGATGGGTTTaGACTGGTTCATGCCAGCGT +
Preference number: 4 (lower is better)
Translates to: CAPNCPTLRFSALRSQATLGRWV*TGSCQR
Trigger: ACGCTGGCATGAACCAGTTCAAACCCATCTTCCTAA...GGTCGCCTGACTCCGCAGAGCTGAGAAACGAAGAGTGGGGCAGTTGGGCGCACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS-3UTR GCA 90 bp CAACAGAGCTGTCCAGTGCTTTGGTTCTGTGCGCCCAACTGCCCCACTCTTCGTTGCCCCCAGCTCGGATaGATTTCTGGGTATTGGCAG +
Preference number: 4 (lower is better)
Translates to: QQSCPVLWFCAPNCPTLRCPQLG*ISGYWQ
Trigger: CTGCCAATACCCAGAAATGCATCCGAGCTGGGGGCA...ACGAAGAGTGGGGCAGTTGGGCGCACAGAACCAAAGCACTGGACAGCTCTGTTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS-3UTR GCA 90 bp CAACAGAGCTGTCCAGTGCTTTGGTTCTGTGCGCCCAACTGCCCCACTCTTCGTGGCCTCCAAACCCTTTaGCCGGAGCTCTTCAATAGC +
Preference number: 4 (lower is better)
Translates to: QQSCPVLWFCAPNCPTLRGLQTL*PELFNS
Trigger: GCTATTGAAGAGCTCCGGGCAAAGGGTTTGGAGGCC...ACGAAGAGTGGGGCAGTTGGGCGCACAGAACCAAAGCACTGGACAGCTCTGTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS-3UTR CCA 90 bp CAACAGAGCTGTCCAGTGCTTTGGTTCTGTGCGCCCAACTGCCCCACTCTTCGTTCATCTTTCTGCCACTaGGGGATGACTGCAGTGGCC +
Preference number: 4 (lower is better)
Translates to: QQSCPVLWFCAPNCPTLRSSFCH*GMTAVA
Trigger: GGCCACTGCAGTCATCCCCCAGTGGCAGAAAGATGA...ACGAAGAGTGGGGCAGTTGGGCGCACAGAACCAAAGCACTGGACAGCTCTGTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS-3UTR TCA 90 bp CTGTGCGCCCAACTGCCCCACTCTTCGTTTCTCAGCTCTGCGGAGTCAGGCGACCCTCAATCATGCCATTaGCAATCTCTTCAGCCTTCT +
Preference number: 4 (lower is better)
Translates to: LCAQLPHSSFLSSAESGDPQSCH*QSLQPS
Trigger: AGAAGGCTGAAGAGATTGTCAATGGCATGATTGAGG...GTCGCCTGACTCCGCAGAGCTGAGAAACGAAGAGTGGGGCAGTTGGGCGCACAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS-3UTR TCA 90 bp CAACAGAGCTGTCCAGTGCTTTGGTTCTGTGCGCCCAACTGCCCCACTCTTCGTAGGTTTCTGACTTCCTaGGAGCCTTCTGGGCTTCAG +
Preference number: 4 (lower is better)
Translates to: QQSCPVLWFCAPNCPTLRRFLTS*EPSGLQ
Trigger: CTGAAGCCCAGAAGGCTCTCAGGAAGTCAGAAACCT...ACGAAGAGTGGGGCAGTTGGGCGCACAGAACCAAAGCACTGGACAGCTCTGTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS-3UTR GCA 90 bp CAACAGAGCTGTCCAGTGCTTTGGTTCTGTGCGCCCAACTGCCCCACTCTTCGTGTAGACAGGCTTAGCTaGCTCAATCATGCCATTGAC +
Preference number: 4 (lower is better)
Translates to: QQSCPVLWFCAPNCPTLRVDRLS*LNHAID
Trigger: GTCAATGGCATGATTGAGGCAGCTAAGCCTGTCTAC...ACGAAGAGTGGGGCAGTTGGGCGCACAGAACCAAAGCACTGGACAGCTCTGTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS-3UTR GCA 90 bp CTGAGGAACTGTCATAAGCAGACAGTATCTCTGCTTCCAGACCCTGCTGTTTGTGGTAGCCAGCTGCAGTaGTTCCTGAAGGCAGCCCAC +
Preference number: 4 (lower is better)
Translates to: LRNCHKQTVSLLPDPAVCGSQLQ*FLKAAH
Trigger: GTGGGCTGCCTTCAGGAAGCACTGCAGCTGGCTACC...ACAAACAGCAGGGTCTGGAAGCAGAGATACTGTCTGCTTATGACAGTTCCTCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS-3UTR TCA 90 bp CAACAGAGCTGTCCAGTGCTTTGGTTCTGTGCGCCCAACTGCCCCACTCTTCGTGCTACCACTGGAGTCTaGTTGGTAGTTATACTTTGG +
Preference number: 4 (lower is better)
Translates to: QQSCPVLWFCAPNCPTLRATTGV*LVVILW
Trigger: CCAAAGTATAACTACCAATCAGACTCCAGTGGTAGC...ACGAAGAGTGGGGCAGTTGGGCGCACAGAACCAAAGCACTGGACAGCTCTGTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS-3UTR TCA 90 bp GTTTATTATGTATTGGAGCCAATGGCTGGCCTGCACTGGGTCCATCTCCTACAAAGCTGCAGTGCTTCCTaGAGGCAGCCCACGTTCTTG +
Preference number: 4 (lower is better)
Translates to: VYYVLEPMAGLHWVHLLQSCSAS*RQPTFL
Trigger: CAAGAACGTGGGCTGCCTTCAGGAAGCACTGCAGCT...TTGTAGGAGATGGACCCAGTGCAGGCCAGCCATTGGCTCCAATACATAATAAAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS-3UTR GCA 90 bp GTTTATTATGTATTGGAGCCAATGGCTGGCCTGCACTGGGTCCATCTCCTACAAATCAGGCCTGAAACCTaGTGGACCCACTCGCTGGCT +
Preference number: 4 (lower is better)
Translates to: VYYVLEPMAGLHWVHLLQIRPET*WTHSLA
Trigger: AGCCAGCGAGTGGGTCCAGCAGGTTTCAGGCCTGAT...TTGTAGGAGATGGACCCAGTGCAGGCCAGCCATTGGCTCCAATACATAATAAAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS-3UTR TCA 90 bp CTGAGGAACTGTCATAAGCAGACAGTATCTCTGCTTCCAGACCCTGCTGTTTGTTACCCGCCTCGGACCTaGGCGTTCTTCACTGTAAAC +
Preference number: 4 (lower is better)
Translates to: LRNCHKQTVSLLPDPAVCYPPRT*AFFTVN
Trigger: GTTTACAGTGAAGAACGCTCAGGTCCGAGGCGGGTA...ACAAACAGCAGGGTCTGGAAGCAGAGATACTGTCTGCTTATGACAGTTCCTCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS-3UTR TCA 90 bp GTTTATTATGTATTGGAGCCAATGGCTGGCCTGCACTGGGTCCATCTCCTACAAGTCAGGAGCAACCAGTaGACCTTTCTGGTCCGCTTC +
Preference number: 4 (lower is better)
Translates to: VYYVLEPMAGLHWVHLLQVRSNQ*TFLVRF
Trigger: GAAGCGGACCAGAAAGGTTCACTGGTTGCTCCTGAC...TTGTAGGAGATGGACCCAGTGCAGGCCAGCCATTGGCTCCAATACATAATAAAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS-3UTR GCA 90 bp CTGAGGAACTGTCATAAGCAGACAGTATCTCTGCTTCCAGACCCTGCTGTTTGTTCTGCACATCGGCTTTaGTGGCCCGGTCTAGGTCAT +
Preference number: 4 (lower is better)
Translates to: LRNCHKQTVSLLPDPAVCSAHRL*WPGLGH
Trigger: ATGACCTAGACCGGGCCAGCAAAGCCGATGTGCAGA...ACAAACAGCAGGGTCTGGAAGCAGAGATACTGTCTGCTTATGACAGTTCCTCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS-3UTR CCA 90 bp AAGTCCTTTCCAACTTGGGAGTATGGCTGCTTTCAAATCTCTCCAACTGGATCGACAGCTCGAAGGCCCTaGATGGCTTTTGCTGCTGCC +
Preference number: 4 (lower is better)
Translates to: KSFPTWEYGCFQISPTGSTARRP*MAFAAA
Trigger: GGCAGCAGCAAAAGCCATCCAGGGCCTTCGAGCTGT...CGATCCAGTTGGAGAGATTTGAAAGCAGCCATACTCCCAAGTTGGAAAGGACTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS-3UTR GCA 90 bp TTTCAAATCTCTCCAACTGGATCGTGTTTCCAACGGCCTTTTAAACCTTTCCAAGGTGTGCGGCGTCCCTaGCACCAATGCGGTCATAGT +
Preference number: 4 (lower is better)
Translates to: FQISPTGSCFQRPFKPFQGVRRP*HQCGHS
Trigger: ACTATGACCGCATTGGTGGCAGGGACGCCGCACACC...TTGGAAAGGTTTAAAAGGCCGTTGGAAACACGATCCAGTTGGAGAGATTTGAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS-3UTR CCA 90 bp AAGTCCTTTCCAACTTGGGAGTATGGCTGCTTTCAAATCTCTCCAACTGGATCGGTCCTTCACCATCTCTaGGTCCTTCTTCAGCTCAGG +
Preference number: 4 (lower is better)
Translates to: KSFPTWEYGCFQISPTGSVLHHL*VLLQLR
Trigger: CCTGAGCTGAAGAAGGACCCAGAGATGGTGAAGGAC...CGATCCAGTTGGAGAGATTTGAAAGCAGCCATACTCCCAAGTTGGAAAGGACTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS-3UTR CCA 90 bp TTTCAAATCTCTCCAACTGGATCGTGTTTCCAACGGCCTTTTAAACCTTTCCAAACCACTCCACACTCCTaGCCAGTGACCACCTCGTCC +
Preference number: 4 (lower is better)
Translates to: FQISPTGSCFQRPFKPFQTTPHS*PVTTSS
Trigger: GGACGAGGTGGTCACTGGCCAGGAGTGTGGAGTGGT...TTGGAAAGGTTTAAAAGGCCGTTGGAAACACGATCCAGTTGGAGAGATTTGAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS-3UTR CCA 90 bp GGCAAAGTCCCCTGGTCCATCCTCTCAAAAGAATCAGTTTATTATGTATTGGAGGCACATCGGCTTTGCTaGCCCGGTCTAGGTCATCCA +
Preference number: 4 (lower is better)
Translates to: GKVPWSILSKESVYYVLEAHRLC*PGLGHP
Trigger: TGGATGACCTAGACCGGGCCAGCAAAGCCGATGTGC...CTCCAATACATAATAAACTGATTCTTTTGAGAGGATGGACCAGGGGACTTTGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS-3UTR CCA 90 bp GGCAAAGTCCCCTGGTCCATCCTCTCAAAAGAATCAGTTTATTATGTATTGGAGTTCTTGCCTGTGGCCTaGGCGGACATGTCCTTGCCA +
Preference number: 4 (lower is better)
Translates to: GKVPWSILSKESVYYVLEFLPVA*ADMSLP
Trigger: TGGCAAGGACATGTCCGCCCAGGCCACAGGCAAGAA...CTCCAATACATAATAAACTGATTCTTTTGAGAGGATGGACCAGGGGACTTTGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS-3UTR TCA 90 bp CTGAGGAACTGTCATAAGCAGACAGTATCTCTGCTTCCAGACCCTGCTGTTTGTATAAACAGCCGGACTTaGTCCCCCACTTTCAGGTTA +
Preference number: 4 (lower is better)
Translates to: LRNCHKQTVSLLPDPAVCINSRT*SPTFRL
Trigger: TAACCTGAAAGTGGGGGATCAAGTCCGGCTGTTTAT...ACAAACAGCAGGGTCTGGAAGCAGAGATACTGTCTGCTTATGACAGTTCCTCAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS-3UTR CCA 90 bp GGCAAAGTCCCCTGGTCCATCCTCTCAAAAGAATCAGTTTATTATGTATTGGAGCATCCAGAGGGATGGTaGCGGAAGAGTGGACATAGG +
Preference number: 4 (lower is better)
Translates to: GKVPWSILSKESVYYVLEHPEGW*RKSGHR
Trigger: CCTATGTCCACTCTTCCGCCACCATCCCTCTGGATG...CTCCAATACATAATAAACTGATTCTTTTGAGAGGATGGACCAGGGGACTTTGCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS-3UTR CCA 90 bp AAGTCCTTTCCAACTTGGGAGTATGGCTGCTTTCAAATCTCTCCAACTGGATCGTTGGAGAATCATCTGTaGCCTCCAAACCCTTTGCCC +
Preference number: 4 (lower is better)
Translates to: KSFPTWEYGCFQISPTGSLENHL*PPNPLP
Trigger: GGGCAAAGGGTTTGGAGGCCACAGATGATTCTCCAA...CGATCCAGTTGGAGAGATTTGAAAGCAGCCATACTCCCAAGTTGGAAAGGACTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS-3UTR CCA 90 bp TTTTCCTCCACCCTTCTATTGAATTTCCTGAACTTTCAGGAGTCTGGGAGTCTAACCAGTGAACCTTTCTaGTCCGCTTCCCCAAGCACC +
Preference number: 4 (lower is better)
Translates to: FSSTLLLNFLNFQESGSLTSEPF*SASPST
Trigger: GGTGCTTGGGGAAGCGGACCAGAAAGGTTCACTGGT...TAGACTCCCAGACTCCTGAAAGTTCAGGAAATTCAATAGAAGGGTGGAGGAAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS-3UTR CCA 90 bp TTTCAAATCTCTCCAACTGGATCGTGTTTCCAACGGCCTTTTAAACCTTTCCAACGGTTGGCTGCATTCTaGGGAACCTGGCACAAGCAC +
Preference number: 4 (lower is better)
Translates to: FQISPTGSCFQRPFKPFQRLAAF*GTWHKH
Trigger: GTGCTTGTGCCAGGTTCCCCAGAATGCAGCCAACCG...TTGGAAAGGTTTAAAAGGCCGTTGGAAACACGATCCAGTTGGAGAGATTTGAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS-3UTR GCA 90 bp TTTCAAATCTCTCCAACTGGATCGTGTTTCCAACGGCCTTTTAAACCTTTCCAAGGTGGTAGACATCCTTaGCCACGTCATCCAGGTCGT +
Preference number: 4 (lower is better)
Translates to: FQISPTGSCFQRPFKPFQGGRHP*PRHPGR
Trigger: ACGACCTGGATGACGTGGGCAAGGATGTCTACCACC...TTGGAAAGGTTTAAAAGGCCGTTGGAAACACGATCCAGTTGGAGAGATTTGAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS-3UTR GCA 90 bp GGCAAAGTCCCCTGGTCCATCCTCTCAAAAGAATCAGTTTATTATGTATTGGAGCACGTCCTTGTTGGGTaGAGTCTGGGCCTTCACTTT +
Preference number: 4 (lower is better)
Translates to: GKVPWSILSKESVYYVLEHVLVG*SLGLHF
Trigger: AAAGTGAAGGCCCAGACTGCACCCAACAAGGACGTG...CTCCAATACATAATAAACTGATTCTTTTGAGAGGATGGACCAGGGGACTTTGCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS-3UTR GCA 90 bp TTTTCCTCCACCCTTCTATTGAATTTCCTGAACTTTCAGGAGTCTGGGAGTCTATCTAACACTCGCTTCTaGACATCGGCTTTGCTGGCC +
Preference number: 4 (lower is better)
Translates to: FSSTLLLNFLNFQESGSLSNTRF*TSALLA
Trigger: GGCCAGCAAAGCCGATGTGCAGAAGCGAGTGTTAGA...TAGACTCCCAGACTCCTGAAAGTTCAGGAAATTCAATAGAAGGGTGGAGGAAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS-3UTR TCA 90 bp GGCAAAGTCCCCTGGTCCATCCTCTCAAAAGAATCAGTTTATTATGTATTGGAGCAGCAATCAATCCAGTaGGGTCCACTGGGAATCCAT +
Preference number: 4 (lower is better)
Translates to: GKVPWSILSKESVYYVLEQQSIQ*GPLGIH
Trigger: ATGGATTCCCAGTGGACCTCACTGGATTGATTGCTG...CTCCAATACATAATAAACTGATTCTTTTGAGAGGATGGACCAGGGGACTTTGCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS-3UTR TCA 90 bp TTTCAAATCTCTCCAACTGGATCGTGTTTCCAACGGCCTTTTAAACCTTTCCAACCTCATTGTCCACCGTaGACAGCATGGCAGATGTCT +
Preference number: 4 (lower is better)
Translates to: FQISPTGSCFQRPFKPFQPHCPP*TAWQMS
Trigger: AGACATCTGCCATGCTGTTCACGGTGGACAATGAGG...TTGGAAAGGTTTAAAAGGCCGTTGGAAACACGATCCAGTTGGAGAGATTTGAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS-3UTR CCA 90 bp TTTCAAATCTCTCCAACTGGATCGTGTTTCCAACGGCCTTTTAAACCTTTCCAAGCCTTCTTGATTTGCTaGGTGGACATGGCTCCCTTG +
Preference number: 4 (lower is better)
Translates to: FQISPTGSCFQRPFKPFQAFLIC*VDMAPL
Trigger: CAAGGGAGCCATGTCCACCCAGCAAATCAAGAAGGC...TTGGAAAGGTTTAAAAGGCCGTTGGAAACACGATCCAGTTGGAGAGATTTGAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS-3UTR TCA 90 bp TTTTCCTCCACCCTTCTATTGAATTTCCTGAACTTTCAGGAGTCTGGGAGTCTACTTCGAAGTAAGGCATaGAAAGGTCGGTGTCGTAGT +
Preference number: 4 (lower is better)
Translates to: FSSTLLLNFLNFQESGSLLRSKA*KGRCRS
Trigger: ACTACGACACCGACCTTTTCATGCCTTACTTCGAAG...TAGACTCCCAGACTCCTGAAAGTTCAGGAAATTCAATAGAAGGGTGGAGGAAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS-3UTR TCA 90 bp TTTTCCTCCACCCTTCTATTGAATTTCCTGAACTTTCAGGAGTCTGGGAGTCTAGGTCTAGGTCATCCATaGCTTTCTTCAGGGACTTCA +
Preference number: 4 (lower is better)
Translates to: FSSTLLLNFLNFQESGSLGLGHP*LSSGTS
Trigger: TGAAGTCCCTGAAGAAAGTCATGGATGACCTAGACC...TAGACTCCCAGACTCCTGAAAGTTCAGGAAATTCAATAGAAGGGTGGAGGAAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS-3UTR GCA 90 bp GGCAAAGTCCCCTGGTCCATCCTCTCAAAAGAATCAGTTTATTATGTATTGGAGAGTTGTCCTTCATGTTaGCAGGGAGGATTCTGGCTT +
Preference number: 4 (lower is better)
Translates to: GKVPWSILSKESVYYVLESCPSC*QGGFWL
Trigger: AAGCCAGAATCCTCCCTGGCAACATGAAGGACAACT...CTCCAATACATAATAAACTGATTCTTTTGAGAGGATGGACCAGGGGACTTTGCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS-3UTR CCA 90 bp AAGTCCTTTCCAACTTGGGAGTATGGCTGCTTTCAAATCTCTCCAACTGGATCGTCCAGTGAGGTCCACTaGGAATCCATAAGTATCATA +
Preference number: 4 (lower is better)
Translates to: KSFPTWEYGCFQISPTGSSSEVH*ESISII
Trigger: TATGATACTTATGGATTCCCAGTGGACCTCACTGGA...CGATCCAGTTGGAGAGATTTGAAAGCAGCCATACTCCCAAGTTGGAAAGGACTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
3UTR CAA 72 bp ACTGTTTCACATAAGCTTGCCCAAGGTGAGAGGTTTTaGTTTACTCGTGCAATTAGTCCTCTGGCTGCTTCA +
Preference number: 4 (lower is better)
Translates to: TVSHKLAQGERF*FTRAISPLAAS
Trigger: TGAAGCAGCCAGAGGACTAATTGCACGAGTAAACAAAAACCTCTCACCTTGGGCAAGCTTATGTGAAACAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS-3UTR TCA 90 bp GGCAAAGTCCCCTGGTCCATCCTCTCAAAAGAATCAGTTTATTATGTATTGGAGCACCACCAAAGTAAGTaGCATAGAGTCTTTCAACTG +
Preference number: 4 (lower is better)
Translates to: GKVPWSILSKESVYYVLEHHQSK*HRVFQL
Trigger: CAGTTGAAAGACTCTATGTCACTTACTTTGGTGGTG...CTCCAATACATAATAAACTGATTCTTTTGAGAGGATGGACCAGGGGACTTTGCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS-3UTR GCA 90 bp GGCAAAGTCCCCTGGTCCATCCTCTCAAAAGAATCAGTTTATTATGTATTGGAGTTGCTGTCAATCAGCTaGTTTGTCTTCTCTAACACT +
Preference number: 4 (lower is better)
Translates to: GKVPWSILSKESVYYVLELLSIS*FVFSNT
Trigger: AGTGTTAGAGAAGACAAAGCAGCTGATTGACAGCAA...CTCCAATACATAATAAACTGATTCTTTTGAGAGGATGGACCAGGGGACTTTGCC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS-3UTR CCA 90 bp TTTTCCTCCACCCTTCTATTGAATTTCCTGAACTTTCAGGAGTCTGGGAGTCTAATAGAGTCTTTCAACTaGAATACCAAACTCCTGGGT +
Preference number: 4 (lower is better)
Translates to: FSSTLLLNFLNFQESGSLIESFN*NTKLLG
Trigger: ACCCAGGAGTTTGGTATTCCAGTTGAAAGACTCTAT...TAGACTCCCAGACTCCTGAAAGTTCAGGAAATTCAATAGAAGGGTGGAGGAAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
3UTR CAA 72 bp TTACTCGTGCAATTAGTCCTCTGGCTGCTTCAACACTaGTTTAATAAATGGACGGTATCTCTCTTTGTACAA +
Preference number: 4 (lower is better)
Translates to: LLVQLVLWLLQH*FNKWTVSLFVQ
Trigger: TTGTACAAAGAGAGATACCGTCCATTTATTAAACAAGTGTTGAAGCAGCCAGAGGACTAATTGCACGAGTAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS-3UTR CAA 90 bp GAGCCCTTGGCCTGGCTCAGCAGCCCGGCGCGCGCGTACACCGGGCGGAGCCGCGGCCCTGGATGGCTTTaGCTGCTGCCAGGGGACAAT +
Preference number: 5 (lower is better)
Translates to: EPLAWLSSPARAYTGRSRGPGWL*LLPGDN
Trigger: ATTGTCCCCTGGCAGCAGCAAAAGCCATCCAGGGCC...GCGGCTCCGCCCGGTGTACGCGCGCGCCGGGCTGCTGAGCCAGGCCAAGGGCTC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS-3UTR CAA 90 bp GGTAGGCGGAGCCCTTGGCCTGGCTCAGCAGCCCGGCGCGCGCGTACACCGGGCCCCATCTCCCAGAAGTaGTCCTTCATGTTGCCAGGG +
Preference number: 5 (lower is better)
Translates to: GRRSPWPGSAARRARTPGPISQK*SFMLPG
Trigger: CCCTGGCAACATGAAGGACAACTTCTGGGAGATGGG...GCCCGGTGTACGCGCGCGCCGGGCTGCTGAGCCAGGCCAAGGGCTCCGCCTACC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS-3UTR CAA 90 bp ACTCCTCCGGCCCGCGGATGCGGCGATGGTCTCCCGGCATGGCGGCTACCGGCGTGTGTAGCTGTGTGGTaGCTCATGACGGGTCTCCGC +
Preference number: 5 (lower is better)
Translates to: TPPARGCGDGLPAWRLPACVAVW*LMTGLR
Trigger: GCGGAGACCCGTCATGAGCAACCACACAGCTACACA...CGCCGGTAGCCGCCATGCCGGGAGACCATCGCCGCATCCGCGGGCCGGAGGAGT
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS-3UTR CAA 90 bp CCTCCTGTAGCGCCAGTCCCAGCTCGCGATCCTCCCCGCCGCCGCCCTGGGGCGCACAAGCACGTGATCTaGCCAGCCTCATTGTCCACC +
Preference number: 5 (lower is better)
Translates to: PPVAPVPARDPPRRRPGAHKHVI*PASLST
Trigger: GGTGGACAATGAGGCTGGCAAGATCACGTGCTTGTG...CGCCCCAGGGCGGCGGCGGGGAGGATCGCGAGCTGGGACTGGCGCTACAGGAGG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS TCA 90 bp CCCGTCCTGTGTTGTCAGGCCGGCCGCCATCAGCCAGCGCCACAGTaGTGGTCCGGGCGTGGTCAGCCAGAACCCGGTAGGCCATGTCGA +
Preference number: 5 (lower is better)
Translates to: PVLCCQAGRHQPAPQ*WSGRGQPEPGRPCR
Trigger: TCGACATGGCCTACCGGGTTCTGGCTGACCACGCCCGGACCATCACTGTGGCGCTGGCTGATGGCGGCCGGCCTGACAACACAGGACGGG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS-3UTR CAA 90 bp GGTAGGCGGAGCCCTTGGCCTGGCTCAGCAGCCCGGCGCGCGCGTACACCGGGCATCTTGCCAGCCTCATaGTCCACCGTGAACAGCATG +
Preference number: 5 (lower is better)
Translates to: GRRSPWPGSAARRARTPGILPAS*STVNSM
Trigger: CATGCTGTTCACGGTGGACAATGAGGCTGGCAAGAT...GCCCGGTGTACGCGCGCGCCGGGCTGCTGAGCCAGGCCAAGGGCTCCGCCTACC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS-3UTR CAA 90 bp GAGCTACTTCCGCCTGCTGGGCTGCCCTTGCGCACCCGGCTCTTCCGCTCGCTTTCGTCCCCTGCTCCCTaGCCCTGTGACTTCAGCTGG +
Preference number: 5 (lower is better)
Translates to: ELLPPAGLPLRTRLFRSLSSPAP*PCDFSW
Trigger: CCAGCTGAAGTCACAGGGCAAGGGAGCAGGGGACGA...AAGCGAGCGGAAGAGCCGGGTGCGCAAGGGCAGCCCAGCAGGCGGAAGTAGCTC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS GCA 90 bp CCGGGCGTGGTCAGCCAGAACCCGGTAGGCCATGTCGATTCCGTCTaGATCCTCAGCACCAACCTTCCCAGTATACGGCCGGGCGCCGGT +
Preference number: 5 (lower is better)
Translates to: PGVVSQNPVGHVDSV*ILSTNLPSIRPGAG
Trigger: ACCGGCGCCCGGCCGTATACTGGGAAGGTTGGTGCTGAGGATGCAGACGGAATCGACATGGCCTACCGGGTTCTGGCTGACCACGCCCGG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS-3UTR CAA 90 bp TGTGCGCCCAACTGCCCCACTCTTCGTTTCTCAGCTCTGCGGAGTCAGGCGACCTACCCCCGTCCTGTGTaGTCAGGCCGGCCGCCATCA +
Preference number: 5 (lower is better)
Translates to: CAPNCPTLRFSALRSQATYPRPV*SGRPPS
Trigger: TGATGGCGGCCGGCCTGACAACACAGGACGGGGGTA...GGTCGCCTGACTCCGCAGAGCTGAGAAACGAAGAGTGGGGCAGTTGGGCGCACA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS-3UTR CAA 90 bp ACTCCTCCGGCCCGCGGATGCGGCGATGGTCTCCCGGCATGGCGGCTACCGGCGAATAAACAGCCGGACTaGATCCCCCACTTTCAGGTT +
Preference number: 5 (lower is better)
Translates to: TPPARGCGDGLPAWRLPANKQPD*IPHFQV
Trigger: AACCTGAAAGTGGGGGATCAAGTCCGGCTGTTTATT...CGCCGGTAGCCGCCATGCCGGGAGACCATCGCCGCATCCGCGGGCCGGAGGAGT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS TCA 90 bp CTGGGCGGACATGTCCTTGCCACCGCCTTTACCATCCATCAGGCCTaGAACCTGCTGGACCCACTCGCTGGCTTTCAGTCCCCGGTTGGC +
Preference number: 5 (lower is better)
Translates to: LGGHVLATAFTIHQA*NLLDPLAGFQSPVG
Trigger: GCCAACCGGGGACTGAAAGCCAGCGAGTGGGTCCAGCAGGTTTCAGGCCTGATGGATGGTAAAGGCGGTGGCAAGGACATGTCCGCCCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS-3UTR CAA 90 bp CTGTGCGCCCAACTGCCCCACTCTTCGTTTCTCAGCTCTGCGGAGTCAGGCGACTTGGGGTCATCCTGGTaGACAAGGTGTGCGGCGTCC +
Preference number: 5 (lower is better)
Translates to: LCAQLPHSSFLSSAESGDLGSSW*TRCAAS
Trigger: GGACGCCGCACACCTTGTCAACCAGGATGACCCCAA...GTCGCCTGACTCCGCAGAGCTGAGAAACGAAGAGTGGGGCAGTTGGGCGCACAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS-3UTR CAA 90 bp CTGTGCGCCCAACTGCCCCACTCTTCGTTTCTCAGCTCTGCGGAGTCAGGCGACGCTTCATTCAGGGCCTaGGCCGATGCTCCACTCTCC +
Preference number: 5 (lower is better)
Translates to: LCAQLPHSSFLSSAESGDASFRA*ADAPLS
Trigger: GGAGAGTGGAGCATCGGCCAAGGCCCTGAATGAAGC...GTCGCCTGACTCCGCAGAGCTGAGAAACGAAGAGTGGGGCAGTTGGGCGCACAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS GCA 90 bp ATGACTGCAGTGGCCAGGGCCTCACCGAGGTCAGCAATTTCCCTCTaGACGTCCTTGTTGGGTGCAGTCTGGGCCTTCACTTTGGCCTCC +
Preference number: 5 (lower is better)
Translates to: MTAVARASPRSAISL*TSLLGAVWAFTLAS
Trigger: GGAGGCCAAAGTGAAGGCCCAGACTGCACCCAACAAGGACGTGCAGAGGGAAATTGCTGACCTCGGTGAGGCCCTGGCCACTGCAGTCAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS CCA 90 bp CCAGGGCCTCACCGAGGTCAGCAATTTCCCTCTGCACGTCCTTGTTaGGTGCAGTCTGGGCCTTCACTTTGGCCTCCATGGCAGAGAGAG +
Preference number: 5 (lower is better)
Translates to: PGPHRGQQFPSARPC*VQSGPSLWPPWQRE
Trigger: CTCTCTCTGCCATGGAGGCCAAAGTGAAGGCCCAGACTGCACCCAACAAGGACGTGCAGAGGGAAATTGCTGACCTCGGTGAGGCCCTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS-3UTR CAA 90 bp TGTGCGCCCAACTGCCCCACTCTTCGTTTCTCAGCTCTGCGGAGTCAGGCGACCGAGCGCAAGGCGAAGTaGAGGATGTGTGTAGCTGTG +
Preference number: 5 (lower is better)
Translates to: CAPNCPTLRFSALRSQATERKAK*RMCVAV
Trigger: CACAGCTACACACATCCTCAACTTCGCCTTGCGCTC...GGTCGCCTGACTCCGCAGAGCTGAGAAACGAAGAGTGGGGCAGTTGGGCGCACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS-3UTR CAA 90 bp GAGCTACTTCCGCCTGCTGGGCTGCCCTTGCGCACCCGGCTCTTCCGCTCGCTTGCCTCAATCATGCCATaGACAATCTCTTCAGCCTTC +
Preference number: 5 (lower is better)
Translates to: ELLPPAGLPLRTRLFRSLASIMP*TISSAF
Trigger: GAAGGCTGAAGAGATTGTCAATGGCATGATTGAGGC...AAGCGAGCGGAAGAGCCGGGTGCGCAAGGGCAGCCCAGCAGGCGGAAGTAGCTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS TCA 90 bp TCCCTTGGCAGTGAAGTCAAACCGAAGGCGGTCAGGAGCAACCAGTaGACCTTTCTGGTCCGCTTCCCCAAGCACCGAGCGCAAGGCGAA +
Preference number: 5 (lower is better)
Translates to: SLGSEVKPKAVRSNQ*TFLVRFPKHRAQGE
Trigger: TTCGCCTTGCGCTCGGTGCTTGGGGAAGCGGACCAGAAAGGTTCACTGGTTGCTCCTGACCGCCTTCGGTTTGACTTCACTGCCAAGGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS CCA 90 bp CCAAGCACCGAGCGCAAGGCGAAGTTGAGGATGTGTGTAGCTGTGTaGTTGCTCATGACGGGTCTCCGCCGGGGCTCATCAATAAACAGC +
Preference number: 5 (lower is better)
Translates to: PSTERKAKLRMCVAV*LLMTGLRRGSSINS
Trigger: GCTGTTTATTGATGAGCCCCGGCGGAGACCCGTCATGAGCAACCACACAGCTACACACATCCTCAACTTCGCCTTGCGCTCGGTGCTTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS CCA 90 bp GTGAAGTCAAACCGAAGGCGGTCAGGAGCAACCAGTGAACCTTTCTaGTCCGCTTCCCCAAGCACCGAGCGCAAGGCGAAGTTGAGGATG +
Preference number: 5 (lower is better)
Translates to: VKSNRRRSGATSEPF*SASPSTERKAKLRM
Trigger: CATCCTCAACTTCGCCTTGCGCTCGGTGCTTGGGGAAGCGGACCAGAAAGGTTCACTGGTTGCTCCTGACCGCCTTCGGTTTGACTTCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS-3UTR CAA 90 bp CTGTGCGCCCAACTGCCCCACTCTTCGTTTCTCAGCTCTGCGGAGTCAGGCGACAAGTTGTCCTTCATGTaGCCAGGGAGGATTCTGGCT +
Preference number: 5 (lower is better)
Translates to: LCAQLPHSSFLSSAESGDKLSFM*PGRILA
Trigger: AGCCAGAATCCTCCCTGGCAACATGAAGGACAACTT...GTCGCCTGACTCCGCAGAGCTGAGAAACGAAGAGTGGGGCAGTTGGGCGCACAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS-3UTR CAA 90 bp CAACAGAGCTGTCCAGTGCTTTGGTTCTGTGCGCCCAACTGCCCCACTCTTCGTGTCTGGGCCTTCACTTaGGCCTCCATGGCAGAGAGA +
Preference number: 5 (lower is better)
Translates to: QQSCPVLWFCAPNCPTLRVWAFT*ASMAER
Trigger: TCTCTCTGCCATGGAGGCCAAAGTGAAGGCCCAGAC...ACGAAGAGTGGGGCAGTTGGGCGCACAGAACCAAAGCACTGGACAGCTCTGTTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS TCA 90 bp ACGGCCGGGCGCCGGTGCCCTTCTGAATGGCTTCGAAGTAAGGCATaGAAAGGTCGGTGTCGTAGTTGGACATCTTGTTCTGCAGCACAG +
Preference number: 5 (lower is better)
Translates to: TAGRRCPSEWLRSKA*KGRCRSWTSCSAAQ
Trigger: CTGTGCTGCAGAACAAGATGTCCAACTACGACACCGACCTTTTCATGCCTTACTTCGAAGCCATTCAGAAGGGCACCGGCGCCCGGCCGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS TCA 90 bp AGCCAAGCGGTGTCACCTGGGATGGTTTTGCAGTCTCCTAAGCTCTaGATTTTTCGGTCCAGGATGCGCCGCCCTCGGCTGAGAGTCTTG +
Preference number: 5 (lower is better)
Translates to: SQAVSPGMVLQSPKL*IFRSRMRRPRLRVL
Trigger: CAAGACTCTCAGCCGAGGGCGGCGCATCCTGGACCGAAAAATTCAGAGCTTAGGAGACTGCAAAACCATCCCAGGTGACACCGCTTGGCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS TCA 90 bp GGGACTTCAGAGTCTCTCGTTGTTCATCTTTCTGCCACTGGGGGATaGCTGCAGTGGCCAGGGCCTCACCGAGGTCAGCAATTTCCCTCT +
Preference number: 5 (lower is better)
Translates to: GTSESLVVHLSATGG*LQWPGPHRGQQFPS
Trigger: AGAGGGAAATTGCTGACCTCGGTGAGGCCCTGGCCACTGCAGTCATCCCCCAGTGGCAGAAAGATGAACAACGAGAGACTCTGAAGTCCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS GCA 90 bp GGCCTCACCGAGGTCAGCAATTTCCCTCTGCACGTCCTTGTTGGGTaGAGTCTGGGCCTTCACTTTGGCCTCCATGGCAGAGAGAGATTT +
Preference number: 5 (lower is better)
Translates to: GLTEVSNFPLHVLVG*SLGLHFGLHGRERF
Trigger: AAATCTCTCTCTGCCATGGAGGCCAAAGTGAAGGCCCAGACTGCACCCAACAAGGACGTGCAGAGGGAAATTGCTGACCTCGGTGAGGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS GCA 90 bp ATAGGTCTCATCAAACACAGCTCGAAGGCCCTGGATGGCTTTTGCTaGTGCCAGGGGACAATCCTGGGTGTAGACAGGCTTAGCTGCCTC +
Preference number: 5 (lower is better)
Translates to: IGLIKHSSKALDGFC*CQGTILGVDRLSCL
Trigger: GAGGCAGCTAAGCCTGTCTACACCCAGGATTGTCCCCTGGCAGCAGCAAAAGCCATCCAGGGCCTTCGAGCTGTGTTTGATGAGACCTAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS-3UTR CAA 90 bp CCCCACTCTTCGTTTCTCAGCTCTGCGGAGTCAGGCGACCATCAGCGCTTGGTCGGTGAGATGGGTCGATaGTGTTTAGGAAGATGGGTT +
Preference number: 5 (lower is better)
Translates to: PHSSFLSSAESGDHQRLVGEMGR*CLGRWV
Trigger: AACCCATCTTCCTAAACACAATCGACCCATCTCACC...GACCAAGCGCTGATGGTCGCCTGACTCCGCAGAGCTGAGAAACGAAGAGTGGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS-3UTR CAA 90 bp CCCCACTCTTCGTTTCTCAGCTCTGCGGAGTCAGGCGACCATCAGCGCTTGGTCATCTCTTCAGCCTTCTaGATTTGCTGGGTGGACATG +
Preference number: 5 (lower is better)
Translates to: PHSSFLSSAESGDHQRLVISSAF*ICWVDM
Trigger: CATGTCCACCCAGCAAATCAAGAAGGCTGAAGAGAT...GACCAAGCGCTGATGGTCGCCTGACTCCGCAGAGCTGAGAAACGAAGAGTGGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS TCA 90 bp CATAGAAACAGGTCTTGTCCAGCACCACTCCACACTCCTGGCCAGTaGCCACCTCGTCCACAAACATCTTTTCCCGACGCAGAGCAAGCA +
Preference number: 5 (lower is better)
Translates to: HRNRSCPAPLHTPGQ*PPRPQTSFPDAEQA
Trigger: TGCTTGCTCTGCGTCGGGAAAAGATGTTTGTGGACGAGGTGGTCACTGGCCAGGAGTGTGGAGTGGTGCTGGACAAGACCTGTTTCTATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS GCA 90 bp TCTGCAGCACAGACACCAGCCTCTCTAGGCCCATCCCTGTGTCGATaGTTTTCTTGGGAAGAGGTTTCAGAACACCATCCGACTCCCTGT +
Preference number: 5 (lower is better)
Translates to: SAAQTPASLGPSLCR*FSWEEVSEHHPTPC
Trigger: ACAGGGAGTCGGATGGTGTTCTGAAACCTCTTCCCAAGAAAAGCATCGACACAGGGATGGGCCTAGAGAGGCTGGTGTCTGTGCTGCAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS GCA 90 bp ATGACTTTCTTCAGGGACTTCAGAGTCTCTCGTTGTTCATCTTTCTaGCACTGGGGGATGACTGCAGTGGCCAGGGCCTCACCGAGGTCA +
Preference number: 5 (lower is better)
Translates to: MTFFRDFRVSRCSSF*HWGMTAVARASPRS
Trigger: TGACCTCGGTGAGGCCCTGGCCACTGCAGTCATCCCCCAGTGGCAGAAAGATGAACAACGAGAGACTCTGAAGTCCCTGAAGAAAGTCAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS-3UTR CAA 90 bp TTGGTTCTGTGCGCCCAACTGCCCCACTCTTCGTTTCTCAGCTCTGCGGAGTCAACTGTAAACTCGGTTTaGTCCTCACTGCTGTCGTCG +
Preference number: 5 (lower is better)
Translates to: LVLCAQLPHSSFLSSAESTVNSV*SSLLSS
Trigger: CGACGACAGCAGTGAGGACAAAACCGAGTTTACAGT...TGACTCCGCAGAGCTGAGAAACGAAGAGTGGGGCAGTTGGGCGCACAGAACCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS-3UTR CAA 90 bp CTGAGGAACTGTCATAAGCAGACAGTATCTCTGCTTCCAGACCCTGCTGTTTGTTCCCTCTGCACGTCCTaGTTGGGTGCAGTCTGGGCC +
Preference number: 5 (lower is better)
Translates to: LRNCHKQTVSLLPDPAVCSLCTS*LGAVWA
Trigger: GGCCCAGACTGCACCCAACAAGGACGTGCAGAGGGA...ACAAACAGCAGGGTCTGGAAGCAGAGATACTGTCTGCTTATGACAGTTCCTCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS TCA 90 bp CTCATGACGGGTCTCCGCCGGGGCTCATCAATAAACAGCCGGACTTaGTCCCCCACTTTCAGGTTACCATATATCGTTCCTATGTGCAGC +
Preference number: 5 (lower is better)
Translates to: LMTGLRRGSSINSRT*SPTFRLPYIVPMCS
Trigger: GCTGCACATAGGAACGATATATGGTAACCTGAAAGTGGGGGATCAAGTCCGGCTGTTTATTGATGAGCCCCGGCGGAGACCCGTCATGAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS GCA 90 bp GGAGGATTCTGGCTTCATCCAGTCCTAAATTTTGCCAAATCTGTCTaGACTCCAGATCTGGCTCTAGGCCGGCCGCCTCATCACCACCAA +
Preference number: 5 (lower is better)
Translates to: GGFWLHPVLNFAKSV*TPDLALGRPPHHHQ
Trigger: TTGGTGGTGATGAGGCGGCCGGCCTAGAGCCAGATCTGGAGTGCAGACAGATTTGGCAAAATTTAGGACTGGATGAAGCCAGAATCCTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS CCA 90 bp TCAACCAATGTAGCGAAGAAACCCCTGCTGGCATTCAGTTTCTCATaGGAATACCGAACAGCTCGGCGAAGGATCCGTCTCAGCACGTAC +
Preference number: 5 (lower is better)
Translates to: STNVAKKPLLAFSFS*EYRTARRRIRLSTY
Trigger: GTACGTGCTGAGACGGATCCTTCGCCGAGCTGTTCGGTATTCCCATGAGAAACTGAATGCCAGCAGGGGTTTCTTCGCTACATTGGTTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS CCA 90 bp TACCACCAGGCCCTTCTCTTCAGCAATCAATCCAGTGAGGTCCACTaGGAATCCATAAGTATCATAGAGGAGCCAAGCGGTGTCACCTGG +
Preference number: 5 (lower is better)
Translates to: YHQALLFSNQSSEVH*ESISIIEEPSGVTW
Trigger: CCAGGTGACACCGCTTGGCTCCTCTATGATACTTATGGATTCCCAGTGGACCTCACTGGATTGATTGCTGAAGAGAAGGGCCTGGTGGTA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS CCA 90 bp GCCTCAATCATGCCATTGACAATCTCTTCAGCCTTCTTGATTTGCTaGGTGGACATGGCTCCCTTGGCAGTGAAGTCAAACCGAAGGCGG +
Preference number: 5 (lower is better)
Translates to: ASIMPLTISSAFLIC*VDMAPLAVKSNRRR
Trigger: CCGCCTTCGGTTTGACTTCACTGCCAAGGGAGCCATGTCCACCCAGCAAATCAAGAAGGCTGAAGAGATTGTCAATGGCATGATTGAGGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS CCA 90 bp TTTCCCTCTGCACGTCCTTGTTGGGTGCAGTCTGGGCCTTCACTTTaGCCTCCATGGCAGAGAGAGATTTCTTCAAGGTTTCTGACTTCC +
Preference number: 5 (lower is better)
Translates to: FPSARPCWVQSGPSL*PPWQREISSRFLTS
Trigger: GGAAGTCAGAAACCTTGAAGAAATCTCTCTCTGCCATGGAGGCCAAAGTGAAGGCCCAGACTGCACCCAACAAGGACGTGCAGAGGGAAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS-3UTR CAA 90 bp GTTTATTATGTATTGGAGCCAATGGCTGGCCTGCACTGGGTCCATCTCCTACAAATGACCAGCGGCTGGTaGGGGTTGCTGTCAATCAGC +
Preference number: 5 (lower is better)
Translates to: VYYVLEPMAGLHWVHLLQMTSGW*GLLSIS
Trigger: GCTGATTGACAGCAACCCCAACCAGCCGCTGGTCAT...TTGTAGGAGATGGACCCAGTGCAGGCCAGCCATTGGCTCCAATACATAATAAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS TCA 90 bp TTACCATATATCGTTCCTATGTGCAGCACGTACCCGCCTCGGACCTaGGCGTTCTTCACTGTAAACTCGGTTTTGTCCTCACTGCTGTCG +
Preference number: 5 (lower is better)
Translates to: LPYIVPMCSTYPPRT*AFFTVNSVLSSLLS
Trigger: CGACAGCAGTGAGGACAAAACCGAGTTTACAGTGAAGAACGCTCAGGTCCGAGGCGGGTACGTGCTGCACATAGGAACGATATATGGTAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS TCA 90 bp ATCTTGCCAGCCTCATTGTCCACCGTGAACAGCATGGCAGATGTCTaGGGAGAATGCGTCTTGAAAAGCTTCAACGCTTCATTCAGGGCC +
Preference number: 5 (lower is better)
Translates to: ILPASLSTVNSMADV*GECVLKSFNASFRA
Trigger: GGCCCTGAATGAAGCGTTGAAGCTTTTCAAGACGCATTCTCCTCAGACATCTGCCATGCTGTTCACGGTGGACAATGAGGCTGGCAAGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS-3UTR CAA 90 bp CTGAGGAACTGTCATAAGCAGACAGTATCTCTGCTTCCAGACCCTGCTGTTTGTGTGGACATGGCTCCCTaGGCAGTGAAGTCAAACCGA +
Preference number: 5 (lower is better)
Translates to: LRNCHKQTVSLLPDPAVCVDMAP*AVKSNR
Trigger: TCGGTTTGACTTCACTGCCAAGGGAGCCATGTCCAC...ACAAACAGCAGGGTCTGGAAGCAGAGATACTGTCTGCTTATGACAGTTCCTCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS-3UTR CAA 90 bp CTGAGGAACTGTCATAAGCAGACAGTATCTCTGCTTCCAGACCCTGCTGTTTGTAGCGGCTGGTTGGGGTaGCTGTCAATCAGCTGCTTT +
Preference number: 5 (lower is better)
Translates to: LRNCHKQTVSLLPDPAVCSGWLG*LSISCF
Trigger: AAAGCAGCTGATTGACAGCAACCCCAACCAGCCGCT...ACAAACAGCAGGGTCTGGAAGCAGAGATACTGTCTGCTTATGACAGTTCCTCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS-3UTR CAA 90 bp GGCAAAGTCCCCTGGTCCATCCTCTCAAAAGAATCAGTTTATTATGTATTGGAGTGGTTCATGCCAGCGTaGGCGAAGAGCAGAGTGGGG +
Preference number: 5 (lower is better)
Translates to: GKVPWSILSKESVYYVLEWFMPA*AKSRVG
Trigger: CCCCACTCTGCTCTTCGCCAACGCTGGCATGAACCA...CTCCAATACATAATAAACTGATTCTTTTGAGAGGATGGACCAGGGGACTTTGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS-3UTR CAA 90 bp ACTCTGAGTAGTGAGAAGGCAAAGTCCCCTGGTCCATCCTCTCAAAAGAATCAGGTAGATCTGCCCTCCTaGCTCCGCATAGAAACAGGT +
Preference number: 5 (lower is better)
Translates to: TLSSEKAKSPGPSSQKNQVDLPS*LRIETG
Trigger: ACCTGTTTCTATGCGGAGCAAGGAGGGCAGATCTAC...CTGATTCTTTTGAGAGGATGGACCAGGGGACTTTGCCTTCTCACTACTCAGAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS-3UTR CAA 90 bp GTTTATTATGTATTGGAGCCAATGGCTGGCCTGCACTGGGTCCATCTCCTACAATTCAGCCTTCTTGATTaGCTGGGTGGACATGGCTCC +
Preference number: 5 (lower is better)
Translates to: VYYVLEPMAGLHWVHLLQFSLLD*LGGHGS
Trigger: GGAGCCATGTCCACCCAGCAAATCAAGAAGGCTGAA...TTGTAGGAGATGGACCCAGTGCAGGCCAGCCATTGGCTCCAATACATAATAAAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS-3UTR CAA 90 bp ACTCTGAGTAGTGAGAAGGCAAAGTCCCCTGGTCCATCCTCTCAAAAGAATCAGATCCTCCGGATACCCTaGGCAATAGCTTCTTCTGTC +
Preference number: 5 (lower is better)
Translates to: TLSSEKAKSPGPSSQKNQILRIP*AIASSV
Trigger: GACAGAAGAAGCTATTGCCAAGGGTATCCGGAGGAT...CTGATTCTTTTGAGAGGATGGACCAGGGGACTTTGCCTTCTCACTACTCAGAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS TCA 90 bp CACGGTAGCCACTGTACACTCAAACACGTAGCTACCACTGGAGTCTaGTTGGTAGTTATACTTTGGAGAATCATCTGTGGCCTCCAAACC +
Preference number: 5 (lower is better)
Translates to: HGSHCTLKHVATTGV*LVVILWRIICGLQT
Trigger: GGTTTGGAGGCCACAGATGATTCTCCAAAGTATAACTACCAATCAGACTCCAGTGGTAGCTACGTGTTTGAGTGTACAGTGGCTACCGTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS CCA 90 bp GGCCGCCTCATCACCACCAAAGTAAGTGACATAGAGTCTTTCAACTaGAATACCAAACTCCTGGGTAAGAAGTTCCAGGGCCATCTTACA +
Preference number: 5 (lower is better)
Translates to: GRLITTKVSDIESFN*NTKLLGKKFQGHLT
Trigger: TGTAAGATGGCCCTGGAACTTCTTACCCAGGAGTTTGGTATTCCAGTTGAAAGACTCTATGTCACTTACTTTGGTGGTGATGAGGCGGCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS CCA 90 bp CCCTTGGCAATAGCTTCTTCTGTCACTATCACAAAAGCGCCTGCGTaGCTAGAATTCCGTAGATGTGTTCCTCCACAGAACTCAACAGAA +
Preference number: 5 (lower is better)
Translates to: PLAIASSVTITKAPA*LEFRRCVPPQNSTE
Trigger: TTCTGTTGAGTTCTGTGGAGGAACACATCTACGGAATTCTAGCCACGCAGGCGCTTTTGTGATAGTGACAGAAGAAGCTATTGCCAAGGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS GCA 90 bp TTGGTAGTTATACTTTGGAGAATCATCTGTGGCCTCCAAACCCTTTaGCCGGAGCTCTTCAATAGCGTAAATGTCCAGCATGATGAGGTC +
Preference number: 5 (lower is better)
Translates to: LVVILWRIICGLQTL*PELFNSVNVQHDEV
Trigger: GACCTCATCATGCTGGACATTTACGCTATTGAAGAGCTCCGGGCAAAGGGTTTGGAGGCCACAGATGATTCTCCAAAGTATAACTACCAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS-3UTR CAA 90 bp GGCAAAGTCCCCTGGTCCATCCTCTCAAAAGAATCAGTTTATTATGTATTGGAGCAGATCTCCAGCACATaGGGGTCATCCTGGTTGACA +
Preference number: 5 (lower is better)
Translates to: GKVPWSILSKESVYYVLEQISST*GSSWLT
Trigger: TGTCAACCAGGATGACCCCAATGTGCTGGAGATCTG...CTCCAATACATAATAAACTGATTCTTTTGAGAGGATGGACCAGGGGACTTTGCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS-3UTR CAA 90 bp GGCAAAGTCCCCTGGTCCATCCTCTCAAAAGAATCAGTTTATTATGTATTGGAGCCTCGGCTGAGAGTCTaGAGAAACTGCACCTCTTCT +
Preference number: 5 (lower is better)
Translates to: GKVPWSILSKESVYYVLEPRLRV*RNCTSS
Trigger: AGAAGAGGTGCAGTTTCTCAAGACTCTCAGCCGAGG...CTCCAATACATAATAAACTGATTCTTTTGAGAGGATGGACCAGGGGACTTTGCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS-3UTR CAA 90 bp CTGAGGAACTGTCATAAGCAGACAGTATCTCTGCTTCCAGACCCTGCTGTTTGTTGTCAATCAGCTGCTTaGTCTTCTCTAACACTCGCT +
Preference number: 5 (lower is better)
Translates to: LRNCHKQTVSLLPDPAVCCQSAA*SSLTLA
Trigger: AGCGAGTGTTAGAGAAGACAAAGCAGCTGATTGACA...ACAAACAGCAGGGTCTGGAAGCAGAGATACTGTCTGCTTATGACAGTTCCTCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS-3UTR CAA 90 bp GTTTATTATGTATTGGAGCCAATGGCTGGCCTGCACTGGGTCCATCTCCTACAAATTGGTAGTTATACTTaGGAGAATCATCTGTGGCCT +
Preference number: 5 (lower is better)
Translates to: VYYVLEPMAGLHWVHLLQIGSYT*ENHLWP
Trigger: AGGCCACAGATGATTCTCCAAAGTATAACTACCAAT...TTGTAGGAGATGGACCCAGTGCAGGCCAGCCATTGGCTCCAATACATAATAAAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS-3UTR CAA 90 bp GGCAAAGTCCCCTGGTCCATCCTCTCAAAAGAATCAGTTTATTATGTATTGGAGGTGTCGATGCTTTTCTaGGGAAGAGGTTTCAGAACA +
Preference number: 5 (lower is better)
Translates to: GKVPWSILSKESVYYVLEVSMLF*GRGFRT
Trigger: TGTTCTGAAACCTCTTCCCAAGAAAAGCATCGACAC...CTCCAATACATAATAAACTGATTCTTTTGAGAGGATGGACCAGGGGACTTTGCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS TCA 72 bp TGTTGTCAGGCCGGCCGCCATCAGCCAGCGCCACAGTaGTGGTCCGGGCGTGGTCAGCCAGAACCCGGTAGG +
Preference number: 6 (lower is better)
Translates to: CCQAGRHQPAPQ*WSGRGQPEPGR
Trigger: CCTACCGGGTTCTGGCTGACCACGCCCGGACCATCACTGTGGCGCTGGCTGATGGCGGCCGGCCTGACAACA
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS CCA 72 bp GCAGTGCTTCCTGAAGGCAGCCCACGTTCTTGCCTGTaGCCTGGGCGGACATGTCCTTGCCACCGCCTTTAC +
Preference number: 6 (lower is better)
Translates to: AVLPEGSPRSCL*PGRTCPCHRLY
Trigger: GTAAAGGCGGTGGCAAGGACATGTCCGCCCAGGCCACAGGCAAGAACGTGGGCTGCCTTCAGGAAGCACTGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS CAA 72 bp ACCTGCTGGACCCACTCGCTGGCTTTCAGTCCCCGGTaGGCTGCATTCTGGGGAACCTGGCACAAGCACGTG +
Preference number: 6 (lower is better)
Translates to: TCWTHSLAFSPR*AAFWGTWHKHV
Trigger: CACGTGCTTGTGCCAGGTTCCCCAGAATGCAGCCAACCGGGGACTGAAAGCCAGCGAGTGGGTCCAGCAGGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS CAA 90 bp GTGGCCAGGGCCTCACCGAGGTCAGCAATTTCCCTCTGCACGTCCTaGTTGGGTGCAGTCTGGGCCTTCACTTTGGCCTCCATGGCAGAG +
Preference number: 6 (lower is better)
Translates to: VARASPRSAISLCTS*LGAVWAFTLASMAE
Trigger: CTCTGCCATGGAGGCCAAAGTGAAGGCCCAGACTGCACCCAACAAGGACGTGCAGAGGGAAATTGCTGACCTCGGTGAGGCCCTGGCCAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS CCA 72 bp AACCGAAGGCGGTCAGGAGCAACCAGTGAACCTTTCTaGTCCGCTTCCCCAAGCACCGAGCGCAAGGCGAAG +
Preference number: 6 (lower is better)
Translates to: NRRRSGATSEPF*SASPSTERKAK
Trigger: CTTCGCCTTGCGCTCGGTGCTTGGGGAAGCGGACCAGAAAGGTTCACTGGTTGCTCCTGACCGCCTTCGGTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS CCA 72 bp CCACCGCCTTTACCATCCATCAGGCCTGAAACCTGCTaGACCCACTCGCTGGCTTTCAGTCCCCGGTTGGCT +
Preference number: 6 (lower is better)
Translates to: PPPLPSIRPETC*THSLAFSPRLA
Trigger: AGCCAACCGGGGACTGAAAGCCAGCGAGTGGGTCCAGCAGGTTTCAGGCCTGATGGATGGTAAAGGCGGTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS CAA 90 bp GCCAGGGCCTCACCGAGGTCAGCAATTTCCCTCTGCACGTCCTTGTaGGGTGCAGTCTGGGCCTTCACTTTGGCCTCCATGGCAGAGAGA +
Preference number: 6 (lower is better)
Translates to: ARASPRSAISLCTSL*GAVWAFTLASMAER
Trigger: TCTCTCTGCCATGGAGGCCAAAGTGAAGGCCCAGACTGCACCCAACAAGGACGTGCAGAGGGAAATTGCTGACCTCGGTGAGGCCCTGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS GCA 72 bp GTCAGCCAGAACCCGGTAGGCCATGTCGATTCCGTCTaGATCCTCAGCACCAACCTTCCCAGTATACGGCCG +
Preference number: 6 (lower is better)
Translates to: VSQNPVGHVDSV*ILSTNLPSIRP
Trigger: CGGCCGTATACTGGGAAGGTTGGTGCTGAGGATGCAGACGGAATCGACATGGCCTACCGGGTTCTGGCTGAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS GCA 72 bp TTGCCACCGCCTTTACCATCCATCAGGCCTGAAACCTaGTGGACCCACTCGCTGGCTTTCAGTCCCCGGTTG +
Preference number: 6 (lower is better)
Translates to: LPPPLPSIRPET*WTHSLAFSPRL
Trigger: CAACCGGGGACTGAAAGCCAGCGAGTGGGTCCAGCAGGTTTCAGGCCTGATGGATGGTAAAGGCGGTGGCAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS CCA 72 bp GAGCGCAAGGCGAAGTTGAGGATGTGTGTAGCTGTGTaGTTGCTCATGACGGGTCTCCGCCGGGGCTCATCA +
Preference number: 6 (lower is better)
Translates to: ERKAKLRMCVAV*LLMTGLRRGSS
Trigger: TGATGAGCCCCGGCGGAGACCCGTCATGAGCAACCACACAGCTACACACATCCTCAACTTCGCCTTGCGCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS CAA 90 bp AGCACCGAGCGCAAGGCGAAGTTGAGGATGTGTGTAGCTGTGTGGTaGCTCATGACGGGTCTCCGCCGGGGCTCATCAATAAACAGCCGG +
Preference number: 6 (lower is better)
Translates to: STERKAKLRMCVAVW*LMTGLRRGSSINSR
Trigger: CCGGCTGTTTATTGATGAGCCCCGGCGGAGACCCGTCATGAGCAACCACACAGCTACACACATCCTCAACTTCGCCTTGCGCTCGGTGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS CAA 90 bp GAACCTTTCTGGTCCGCTTCCCCAAGCACCGAGCGCAAGGCGAAGTaGAGGATGTGTGTAGCTGTGTGGTTGCTCATGACGGGTCTCCGC +
Preference number: 6 (lower is better)
Translates to: EPFWSASPSTERKAK*RMCVAVWLLMTGLR
Trigger: GCGGAGACCCGTCATGAGCAACCACACAGCTACACACATCCTCAACTTCGCCTTGCGCTCGGTGCTTGGGGAAGCGGACCAGAAAGGTTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS TCA 72 bp AGTGAAGTCAAACCGAAGGCGGTCAGGAGCAACCAGTaGACCTTTCTGGTCCGCTTCCCCAAGCACCGAGCG +
Preference number: 6 (lower is better)
Translates to: SEVKPKAVRSNQ*TFLVRFPKHRA
Trigger: CGCTCGGTGCTTGGGGAAGCGGACCAGAAAGGTTCACTGGTTGCTCCTGACCGCCTTCGGTTTGACTTCACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS TCA 72 bp GAGTCTCTCGTTGTTCATCTTTCTGCCACTGGGGGATaGCTGCAGTGGCCAGGGCCTCACCGAGGTCAGCAA +
Preference number: 6 (lower is better)
Translates to: ESLVVHLSATGG*LQWPGPHRGQQ
Trigger: TTGCTGACCTCGGTGAGGCCCTGGCCACTGCAGTCATCCCCCAGTGGCAGAAAGATGAACAACGAGAGACTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS TCA 72 bp CATGTCCTTGCCACCGCCTTTACCATCCATCAGGCCTaGAACCTGCTGGACCCACTCGCTGGCTTTCAGTCC +
Preference number: 6 (lower is better)
Translates to: HVLATAFTIHQA*NLLDPLAGFQS
Trigger: GGACTGAAAGCCAGCGAGTGGGTCCAGCAGGTTTCAGGCCTGATGGATGGTAAAGGCGGTGGCAAGGACATG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS GCA 72 bp CTCCAGCACATTGGGGTCATCCTGGTTGACAAGGTGTaGGGCGTCCCTGCCACCAATGCGGTCATAGTGGAT +
Preference number: 6 (lower is better)
Translates to: LQHIGVILVDKV*GVPATNAVIVD
Trigger: ATCCACTATGACCGCATTGGTGGCAGGGACGCCGCACACCTTGTCAACCAGGATGACCCCAATGTGCTGGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS CCA 72 bp AGGTCGTTGTGCTTGCCCCCAGCTCGGATGCATTTCTaGGTATTGGCAGCTCTGCTCAGCTTCGCCATAGGG +
Preference number: 6 (lower is better)
Translates to: RSLCLPPARMHF*VLAALLSFAIG
Trigger: CCCTATGGCGAAGCTGAGCAGAGCTGCCAATACCCAGAAATGCATCCGAGCTGGGGGCAAGCACAACGACCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS CCA 72 bp ACGAGGTTCCAGATCTCCAGCACATTGGGGTCATCCTaGTTGACAAGGTGTGCGGCGTCCCTGCCACCAATG +
Preference number: 6 (lower is better)
Translates to: TRFQISSTLGSS*LTRCAASLPPM
Trigger: CATTGGTGGCAGGGACGCCGCACACCTTGTCAACCAGGATGACCCCAATGTGCTGGAGATCTGGAACCTCGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS TCA 72 bp GTGTCACCTGGGATGGTTTTGCAGTCTCCTAAGCTCTaGATTTTTCGGTCCAGGATGCGCCGCCCTCGGCTG +
Preference number: 6 (lower is better)
Translates to: VSPGMVLQSPKL*IFRSRMRRPRL
Trigger: CAGCCGAGGGCGGCGCATCCTGGACCGAAAAATTCAGAGCTTAGGAGACTGCAAAACCATCCCAGGTGACAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS TCA 72 bp AGGTCTTGTCCAGCACCACTCCACACTCCTGGCCAGTaGCCACCTCGTCCACAAACATCTTTTCCCGACGCA +
Preference number: 6 (lower is better)
Translates to: RSCPAPLHTPGQ*PPRPQTSFPDA
Trigger: TGCGTCGGGAAAAGATGTTTGTGGACGAGGTGGTCACTGGCCAGGAGTGTGGAGTGGTGCTGGACAAGACCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS CCA 72 bp TGGCGAAGAGCAGAGTGGGGTCATCCAGAGGGATGGTaGCGGAAGAGTGGACATAGGTGTGCTCATTTCGTC +
Preference number: 6 (lower is better)
Translates to: WRRAEWGHPEGW*RKSGHRCAHFV
Trigger: GACGAAATGAGCACACCTATGTCCACTCTTCCGCCACCATCCCTCTGGATGACCCCACTCTGCTCTTCGCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS CCA 72 bp CGTTGGCGAAGAGCAGAGTGGGGTCATCCAGAGGGATaGTGGCGGAAGAGTGGACATAGGTGTGCTCATTTC +
Preference number: 6 (lower is better)
Translates to: RWRRAEWGHPEG*WRKSGHRCAHF
Trigger: GAAATGAGCACACCTATGTCCACTCTTCCGCCACCATCCCTCTGGATGACCCCACTCTGCTCTTCGCCAACG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS CAA 72 bp CGCAAGGCGAAGTTGAGGATGTGTGTAGCTGTGTGGTaGCTCATGACGGGTCTCCGCCGGGGCTCATCAATA +
Preference number: 6 (lower is better)
Translates to: RKAKLRMCVAVW*LMTGLRRGSSI
Trigger: TATTGATGAGCCCCGGCGGAGACCCGTCATGAGCAACCACACAGCTACACACATCCTCAACTTCGCCTTGCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS CAA 72 bp GCTGCATTCTGGGGAACCTGGCACAAGCACGTGATCTaGCCAGCCTCATTGTCCACCGTGAACAGCATGGCA +
Preference number: 6 (lower is better)
Translates to: AAFWGTWHKHVI*PASLSTVNSMA
Trigger: TGCCATGCTGTTCACGGTGGACAATGAGGCTGGCAAGATCACGTGCTTGTGCCAGGTTCCCCAGAATGCAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS CAA 90 bp TCCCTGTTATACTGGATGAACACGAGGTTCCAGATCTCCAGCACATaGGGGTCATCCTGGTTGACAAGGTGTGCGGCGTCCCTGCCACCA +
Preference number: 6 (lower is better)
Translates to: SLLYWMNTRFQISST*GSSWLTRCAASLPP
Trigger: TGGTGGCAGGGACGCCGCACACCTTGTCAACCAGGATGACCCCAATGTGCTGGAGATCTGGAACCTCGTGTTCATCCAGTATAACAGGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS GCA 72 bp TTCAGGGACTTCAGAGTCTCTCGTTGTTCATCTTTCTaGCACTGGGGGATGACTGCAGTGGCCAGGGCCTCA +
Preference number: 6 (lower is better)
Translates to: FRDFRVSRCSSF*HWGMTAVARAS
Trigger: TGAGGCCCTGGCCACTGCAGTCATCCCCCAGTGGCAGAAAGATGAACAACGAGAGACTCTGAAGTCCCTGAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS CCA 72 bp TCTTCGTCCCCTGCTCCCTTGCCCTGTGACTTCAGCTaGGCCAGTCTCCTCTCTTCCTCAAAGCCATTCATA +
Preference number: 6 (lower is better)
Translates to: SSSPAPLPCDFS*ASLLSSSKPFI
Trigger: TATGAATGGCTTTGAGGAAGAGAGGAGACTGGCCCAGCTGAAGTCACAGGGCAAGGGAGCAGGGGACGAAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS CAA 72 bp TCTCATCAAACACAGCTCGAAGGCCCTGGATGGCTTTaGCTGCTGCCAGGGGACAATCCTGGGTGTAGACAG +
Preference number: 6 (lower is better)
Translates to: SHQTQLEGPGWL*LLPGDNPGCRQ
Trigger: CTGTCTACACCCAGGATTGTCCCCTGGCAGCAGCAAAAGCCATCCAGGGCCTTCGAGCTGTGTTTGATGAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS CAA 90 bp GTCGTCGACCTTCACCAAGTAGCCTTCATCGTAGATCTGCCCTCCTaGCTCCGCATAGAAACAGGTCTTGTCCAGCACCACTCCACACTC +
Preference number: 6 (lower is better)
Translates to: VVDLHQVAFIVDLPS*LRIETGLVQHHSTL
Trigger: GAGTGTGGAGTGGTGCTGGACAAGACCTGTTTCTATGCGGAGCAAGGAGGGCAGATCTACGATGAAGGCTACTTGGTGAAGGTCGACGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS GCA 72 bp CAGACACCAGCCTCTCTAGGCCCATCCCTGTGTCGATaGTTTTCTTGGGAAGAGGTTTCAGAACACCATCCG +
Preference number: 6 (lower is better)
Translates to: QTPASLGPSLCR*FSWEEVSEHHP
Trigger: CGGATGGTGTTCTGAAACCTCTTCCCAAGAAAAGCATCGACACAGGGATGGGCCTAGAGAGGCTGGTGTCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS CCA 72 bp GTAGCGAAGAAACCCCTGCTGGCATTCAGTTTCTCATaGGAATACCGAACAGCTCGGCGAAGGATCCGTCTC +
Preference number: 6 (lower is better)
Translates to: VAKKPLLAFSFS*EYRTARRRIRL
Trigger: GAGACGGATCCTTCGCCGAGCTGTTCGGTATTCCCATGAGAAACTGAATGCCAGCAGGGGTTTCTTCGCTAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS CAA 72 bp AGCCTCTCTAGGCCCATCCCTGTGTCGATGCTTTTCTaGGGAAGAGGTTTCAGAACACCATCCGACTCCCTG +
Preference number: 6 (lower is better)
Translates to: SLSRPIPVSMLF*GRGFRTPSDSL
Trigger: CAGGGAGTCGGATGGTGTTCTGAAACCTCTTCCCAAGAAAAGCATCGACACAGGGATGGGCCTAGAGAGGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS CAA 72 bp GGGTCTCCGCCGGGGCTCATCAATAAACAGCCGGACTaGATCCCCCACTTTCAGGTTACCATATATCGTTCC +
Preference number: 6 (lower is better)
Translates to: GSPPGLINKQPD*IPHFQVTIYRS
Trigger: GGAACGATATATGGTAACCTGAAAGTGGGGGATCAAGTCCGGCTGTTTATTGATGAGCCCCGGCGGAGACCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS CAA 72 bp CCAGCGGCTGGTTGGGGTTGCTGTCAATCAGCTGCTTaGTCTTCTCTAACACTCGCTTCTGCACATCGGCTT +
Preference number: 6 (lower is better)
Translates to: PAAGWGCCQSAA*SSLTLASAHRL
Trigger: AAGCCGATGTGCAGAAGCGAGTGTTAGAGAAGACAAAGCAGCTGATTGACAGCAACCCCAACCAGCCGCTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS CAA 90 bp GCTCATGACGGGTCTCCGCCGGGGCTCATCAATAAACAGCCGGACTaGATCCCCCACTTTCAGGTTACCATATATCGTTCCTATGTGCAG +
Preference number: 6 (lower is better)
Translates to: AHDGSPPGLINKQPD*IPHFQVTIYRSYVQ
Trigger: CTGCACATAGGAACGATATATGGTAACCTGAAAGTGGGGGATCAAGTCCGGCTGTTTATTGATGAGCCCCGGCGGAGACCCGTCATGAGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS TCA 72 bp ATCGTTCCTATGTGCAGCACGTACCCGCCTCGGACCTaGGCGTTCTTCACTGTAAACTCGGTTTTGTCCTCA +
Preference number: 6 (lower is better)
Translates to: IVPMCSTYPPRT*AFFTVNSVLSS
Trigger: TGAGGACAAAACCGAGTTTACAGTGAAGAACGCTCAGGTCCGAGGCGGGTACGTGCTGCACATAGGAACGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS TCA 72 bp GGTCTCCGCCGGGGCTCATCAATAAACAGCCGGACTTaGTCCCCCACTTTCAGGTTACCATATATCGTTCCT +
Preference number: 6 (lower is better)
Translates to: GLRRGSSINSRT*SPTFRLPYIVP
Trigger: AGGAACGATATATGGTAACCTGAAAGTGGGGGATCAAGTCCGGCTGTTTATTGATGAGCCCCGGCGGAGACC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS GCA 72 bp TGGCTTCATCCAGTCCTAAATTTTGCCAAATCTGTCTaGACTCCAGATCTGGCTCTAGGCCGGCCGCCTCAT +
Preference number: 6 (lower is better)
Translates to: WLHPVLNFAKSV*TPDLALGRPPH
Trigger: ATGAGGCGGCCGGCCTAGAGCCAGATCTGGAGTGCAGACAGATTTGGCAAAATTTAGGACTGGATGAAGCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS GCA 72 bp TCAATCAGCTGCTTTGTCTTCTCTAACACTCGCTTCTaGACATCGGCTTTGCTGGCCCGGTCTAGGTCATCC +
Preference number: 6 (lower is better)
Translates to: SISCFVFSNTRF*TSALLARSRSS
Trigger: GGATGACCTAGACCGGGCCAGCAAAGCCGATGTGCAGAAGCGAGTGTTAGAGAAGACAAAGCAGCTGATTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS GCA 72 bp ATGACCAGCGGCTGGTTGGGGTTGCTGTCAATCAGCTaGTTTGTCTTCTCTAACACTCGCTTCTGCACATCG +
Preference number: 6 (lower is better)
Translates to: MTSGWLGLLSIS*FVFSNTRFCTS
Trigger: CGATGTGCAGAAGCGAGTGTTAGAGAAGACAAAGCAGCTGATTGACAGCAACCCCAACCAGCCGCTGGTCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS CCA 72 bp GATGGGTCGATTGTGTTTAGGAAGATGGGTTTGAACTaGTTCATGCCAGCGTTGGCGAAGAGCAGAGTGGGG +
Preference number: 6 (lower is better)
Translates to: DGSIVFRKMGLN*FMPALAKSRVG
Trigger: CCCCACTCTGCTCTTCGCCAACGCTGGCATGAACCAGTTCAAACCCATCTTCCTAAACACAATCGACCCATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS CCA 72 bp GCACGTCCTTGTTGGGTGCAGTCTGGGCCTTCACTTTaGCCTCCATGGCAGAGAGAGATTTCTTCAAGGTTT +
Preference number: 6 (lower is better)
Translates to: ARPCWVQSGPSL*PPWQREISSRF
Trigger: AAACCTTGAAGAAATCTCTCTCTGCCATGGAGGCCAAAGTGAAGGCCCAGACTGCACCCAACAAGGACGTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS CAA 72 bp TTTAGGAAGATGGGTTTGAACTGGTTCATGCCAGCGTaGGCGAAGAGCAGAGTGGGGTCATCCAGAGGGATG +
Preference number: 6 (lower is better)
Translates to: FRKMGLNWFMPA*AKSRVGSSRGM
Trigger: CATCCCTCTGGATGACCCCACTCTGCTCTTCGCCAACGCTGGCATGAACCAGTTCAAACCCATCTTCCTAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS CAA 72 bp TTTCGGTCCAGGATGCGCCGCCCTCGGCTGAGAGTCTaGAGAAACTGCACCTCTTCTTCATTAATGATGTCC +
Preference number: 6 (lower is better)
Translates to: FRSRMRRPRLRV*RNCTSSSLMMS
Trigger: GGACATCATTAATGAAGAAGAGGTGCAGTTTCTCAAGACTCTCAGCCGAGGGCGGCGCATCCTGGACCGAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS CAA 72 bp CTTCACCAAGTAGCCTTCATCGTAGATCTGCCCTCCTaGCTCCGCATAGAAACAGGTCTTGTCCAGCACCAC +
Preference number: 6 (lower is better)
Translates to: LHQVAFIVDLPS*LRIETGLVQHH
Trigger: GTGGTGCTGGACAAGACCTGTTTCTATGCGGAGCAAGGAGGGCAGATCTACGATGAAGGCTACTTGGTGAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS CAA 72 bp TGCACGTCCTTGTTGGGTGCAGTCTGGGCCTTCACTTaGGCCTCCATGGCAGAGAGAGATTTCTTCAAGGTT +
Preference number: 6 (lower is better)
Translates to: CTSLLGAVWAFT*ASMAERDFFKV
Trigger: AACCTTGAAGAAATCTCTCTCTGCCATGGAGGCCAAAGTGAAGGCCCAGACTGCACCCAACAAGGACGTGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS CAA 90 bp ACAATCTCTTCAGCCTTCTTGATTTGCTGGGTGGACATGGCTCCCTaGGCAGTGAAGTCAAACCGAAGGCGGTCAGGAGCAACCAGTGAA +
Preference number: 6 (lower is better)
Translates to: TISSAFLICWVDMAP*AVKSNRRRSGATSE
Trigger: TTCACTGGTTGCTCCTGACCGCCTTCGGTTTGACTTCACTGCCAAGGGAGCCATGTCCACCCAGCAAATCAAGAAGGCTGAAGAGATTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS CAA 90 bp TTCTGGGCTTCAGCACCTGTGACAGCAACAATCCTCCGGATACCCTaGGCAATAGCTTCTTCTGTCACTATCACAAAAGCGCCTGCGTGG +
Preference number: 6 (lower is better)
Translates to: FWASAPVTATILRIP*AIASSVTITKAPAW
Trigger: CCACGCAGGCGCTTTTGTGATAGTGACAGAAGAAGCTATTGCCAAGGGTATCCGGAGGATTGTTGCTGTCACAGGTGCTGAAGCCCAGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS CAA 90 bp ATTTCCCTCTGCACGTCCTTGTTGGGTGCAGTCTGGGCCTTCACTTaGGCCTCCATGGCAGAGAGAGATTTCTTCAAGGTTTCTGACTTC +
Preference number: 6 (lower is better)
Translates to: ISLCTSLLGAVWAFT*ASMAERDFFKVSDF
Trigger: GAAGTCAGAAACCTTGAAGAAATCTCTCTCTGCCATGGAGGCCAAAGTGAAGGCCCAGACTGCACCCAACAAGGACGTGCAGAGGGAAAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS CAA 90 bp ATCAGCTGCTTTGTCTTCTCTAACACTCGCTTCTGCACATCGGCTTaGCTGGCCCGGTCTAGGTCATCCATGACTTTCTTCAGGGACTTC +
Preference number: 6 (lower is better)
Translates to: ISCFVFSNTRFCTSA*LARSRSSMTFFRDF
Trigger: GAAGTCCCTGAAGAAAGTCATGGATGACCTAGACCGGGCCAGCAAAGCCGATGTGCAGAAGCGAGTGTTAGAGAAGACAAAGCAGCTGAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS TCA 72 bp TGGGTATTGGCAGCTCTGCTCAGCTTCGCCATAGGGTaGGATGGGTCGATTGTGTTTAGGAAGATGGGTTTG +
Preference number: 6 (lower is better)
Translates to: WVLAALLSFAIG*DGSIVFRKMGL
Trigger: CAAACCCATCTTCCTAAACACAATCGACCCATCTCACCCTATGGCGAAGCTGAGCAGAGCTGCCAATACCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS TCA 72 bp CGCCGGTGCCCTTCTGAATGGCTTCGAAGTAAGGCATaGAAAGGTCGGTGTCGTAGTTGGACATCTTGTTCT +
Preference number: 6 (lower is better)
Translates to: RRCPSEWLRSKA*KGRCRSWTSCS
Trigger: AGAACAAGATGTCCAACTACGACACCGACCTTTTCATGCCTTACTTCGAAGCCATTCAGAAGGGCACCGGCG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS GCA 72 bp CATAGAGGAGCCAAGCGGTGTCACCTGGGATGGTTTTaGAGTCTCCTAAGCTCTGAATTTTTCGGTCCAGGA +
Preference number: 6 (lower is better)
Translates to: HRGAKRCHLGWF*SLLSSEFFGPG
Trigger: TCCTGGACCGAAAAATTCAGAGCTTAGGAGACTGCAAAACCATCCCAGGTGACACCGCTTGGCTCCTCTATG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS CAA 72 bp CCTGTGTCACCCATCTCCCAGAAGTTGTCCTTCATGTaGCCAGGGAGGATTCTGGCTTCATCCAGTCCTAAA +
Preference number: 6 (lower is better)
Translates to: PVSPISQKLSFM*PGRILASSSPK
Trigger: TTTAGGACTGGATGAAGCCAGAATCCTCCCTGGCAACATGAAGGACAACTTCTGGGAGATGGGTGACACAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS TCA 72 bp GCTCTAGGCCGGCCGCCTCATCACCACCAAAGTAAGTaGCATAGAGTCTTTCAACTGGAATACCAAACTCCT +
Preference number: 6 (lower is better)
Translates to: ALGRPPHHHQSK*HRVFQLEYQTP
Trigger: AGGAGTTTGGTATTCCAGTTGAAAGACTCTATGTCACTTACTTTGGTGGTGATGAGGCGGCCGGCCTAGAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS TCA 72 bp GCCTCATTGTCCACCGTGAACAGCATGGCAGATGTCTaGGGAGAATGCGTCTTGAAAAGCTTCAACGCTTCA +
Preference number: 6 (lower is better)
Translates to: ASLSTVNSMADV*GECVLKSFNAS
Trigger: TGAAGCGTTGAAGCTTTTCAAGACGCATTCTCCTCAGACATCTGCCATGCTGTTCACGGTGGACAATGAGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS CCA 72 bp GCCCTTCTCTTCAGCAATCAATCCAGTGAGGTCCACTaGGAATCCATAAGTATCATAGAGGAGCCAAGCGGT +
Preference number: 6 (lower is better)
Translates to: ALLFSNQSSEVH*ESISIIEEPSG
Trigger: ACCGCTTGGCTCCTCTATGATACTTATGGATTCCCAGTGGACCTCACTGGATTGATTGCTGAAGAGAAGGGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS CAA 72 bp TTTGTCTTCTCTAACACTCGCTTCTGCACATCGGCTTaGCTGGCCCGGTCTAGGTCATCCATGACTTTCTTC +
Preference number: 6 (lower is better)
Translates to: FVFSNTRFCTSA*LARSRSSMTFF
Trigger: GAAGAAAGTCATGGATGACCTAGACCGGGCCAGCAAAGCCGATGTGCAGAAGCGAGTGTTAGAGAAGACAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS TCA 72 bp CTACCACCAGGCCCTTCTCTTCAGCAATCAATCCAGTaGGGTCCACTGGGAATCCATAAGTATCATAGAGGA +
Preference number: 6 (lower is better)
Translates to: LPPGPSLQQSIQ*GPLGIHKYHRG
Trigger: TCCTCTATGATACTTATGGATTCCCAGTGGACCTCACTGGATTGATTGCTGAAGAGAAGGGCCTGGTGGTAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS CCA 72 bp ATGCCATTGACAATCTCTTCAGCCTTCTTGATTTGCTaGGTGGACATGGCTCCCTTGGCAGTGAAGTCAAAC +
Preference number: 6 (lower is better)
Translates to: MPLTISSAFLIC*VDMAPLAVKSN
Trigger: GTTTGACTTCACTGCCAAGGGAGCCATGTCCACCCAGCAAATCAAGAAGGCTGAAGAGATTGTCAATGGCAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS CAA 72 bp CGTAGCTACCACTGGAGTCTGATTGGTAGTTATACTTaGGAGAATCATCTGTGGCCTCCAAACCCTTTGCCC +
Preference number: 6 (lower is better)
Translates to: RSYHWSLIGSYT*ENHLWPPNPLP
Trigger: GGGCAAAGGGTTTGGAGGCCACAGATGATTCTCCAAAGTATAACTACCAATCAGACTCCAGTGGTAGCTACG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS CAA 72 bp TCAGCACCTGTGACAGCAACAATCCTCCGGATACCCTaGGCAATAGCTTCTTCTGTCACTATCACAAAAGCG +
Preference number: 6 (lower is better)
Translates to: SAPVTATILRIP*AIASSVTITKA
Trigger: CGCTTTTGTGATAGTGACAGAAGAAGCTATTGCCAAGGGTATCCGGAGGATTGTTGCTGTCACAGGTGCTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS CAA 90 bp ACTCAAACACGTAGCTACCACTGGAGTCTGATTGGTAGTTATACTTaGGAGAATCATCTGTGGCCTCCAAACCCTTTGCCCGGAGCTCTT +
Preference number: 6 (lower is better)
Translates to: TQTRSYHWSLIGSYT*ENHLWPPNPLPGAL
Trigger: AAGAGCTCCGGGCAAAGGGTTTGGAGGCCACAGATGATTCTCCAAAGTATAACTACCAATCAGACTCCAGTGGTAGCTACGTGTTTGAGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS GCA 72 bp ATACTTTGGAGAATCATCTGTGGCCTCCAAACCCTTTaGCCGGAGCTCTTCAATAGCGTAAATGTCCAGCAT +
Preference number: 6 (lower is better)
Translates to: ILWRIICGLQTL*PELFNSVNVQH
Trigger: ATGCTGGACATTTACGCTATTGAAGAGCTCCGGGCAAAGGGTTTGGAGGCCACAGATGATTCTCCAAAGTAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS CCA 72 bp ATAGCTTCTTCTGTCACTATCACAAAAGCGCCTGCGTaGCTAGAATTCCGTAGATGTGTTCCTCCACAGAAC +
Preference number: 6 (lower is better)
Translates to: IASSVTITKAPA*LEFRRCVPPQN
Trigger: GTTCTGTGGAGGAACACATCTACGGAATTCTAGCCACGCAGGCGCTTTTGTGATAGTGACAGAAGAAGCTAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8
CDS TCA 72 bp CACTGTACACTCAAACACGTAGCTACCACTGGAGTCTaGTTGGTAGTTATACTTTGGAGAATCATCTGTGGC +
Preference number: 6 (lower is better)
Translates to: HCTLKHVATTGV*LVVILWRIICG
Trigger: GCCACAGATGATTCTCCAAAGTATAACTACCAATCAGACTCCAGTGGTAGCTACGTGTTTGAGTGTACAGTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000034441.8