RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for AARD (Mus musculus)

Ensembl gene IDs: ENSMUSG00000068522

Ensembl transcript IDs: ENSMUST00000090025.5

Found 30 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR GCA 90 bp ATGACAGCAAGTCCTGAAATACATGTCCACATTCAGCAAAAAGGTGAGAAGCCCGCGAGGGCTCAGGGTTaGTTTGGAGTGGTGGCCTCG +
Preference number: 2 (lower is better)
Translates to: MTASPEIHVHIQQKGEKPARAQG*FGVVAS
Trigger: CGAGGCCACCACTCCAAAGCAACCCTGAGCCCTCGC...GGGCTTCTCACCTTTTTGCTGAATGTGGACATGTATTTCAGGACTTGCTGTCAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000090025.5
3UTR-3UTR GCA 90 bp CAAGTCCTGAAATACATGTCCACATTCAGCAAAAAGGTGAGAAGCCCTTCTCGCTGCAAGTTCATGCACTaGTACATGAAGGTAACGTGT +
Preference number: 2 (lower is better)
Translates to: QVLKYMSTFSKKVRSPSRCKFMH*YMKVTC
Trigger: ACACGTTACCTTCATGTAGCAGTGCATGAACTTGCA...GCGAGAAGGGCTTCTCACCTTTTTGCTGAATGTGGACATGTATTTCAGGACTTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000090025.5
3UTR-3UTR CCA 90 bp ATGACAGCAAGTCCTGAAATACATGTCCACATTCAGCAAAAAGGTGAGAAGCCCAAACTTTTAGTGCTTTaGTTGTCTTCCACCTCCATC +
Preference number: 2 (lower is better)
Translates to: MTASPEIHVHIQQKGEKPKLLVL*LSSTSI
Trigger: GATGGAGGTGGAAGACAACCAAAGCACTAAAAGTTT...GGGCTTCTCACCTTTTTGCTGAATGTGGACATGTATTTCAGGACTTGCTGTCAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000090025.5
3UTR-3UTR CAA 90 bp CAAGTCCTGAAATACATGTCCACATTCAGCAAAAAGGTGAGAAGCCCTTCTCGCGGGCTCAGGGTTGCTTaGGAGTGGTGGCCTCGGACT +
Preference number: 3 (lower is better)
Translates to: QVLKYMSTFSKKVRSPSRGLRVA*EWWPRT
Trigger: AGTCCGAGGCCACCACTCCAAAGCAACCCTGAGCCC...GCGAGAAGGGCTTCTCACCTTTTTGCTGAATGTGGACATGTATTTCAGGACTTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000090025.5
3UTR-3UTR CAA 90 bp ATGACAGCAAGTCCTGAAATACATGTCCACATTCAGCAAAAAGGTGAGAAGCCCGGCGAGGGCTCAGGGTaGCTTTGGAGTGGTGGCCTC +
Preference number: 3 (lower is better)
Translates to: MTASPEIHVHIQQKGEKPGEGSG*LWSGGL
Trigger: GAGGCCACCACTCCAAAGCAACCCTGAGCCCTCGCC...GGGCTTCTCACCTTTTTGCTGAATGTGGACATGTATTTCAGGACTTGCTGTCAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000090025.5
3UTR-3UTR CAA 90 bp ATGACAGCAAGTCCTGAAATACATGTCCACATTCAGCAAAAAGGTGAGAAGCCCCTTTTAGTGCTTTGGTaGTCTTCCACCTCCATCCTC +
Preference number: 3 (lower is better)
Translates to: MTASPEIHVHIQQKGEKPLLVLW*SSTSIL
Trigger: GAGGATGGAGGTGGAAGACAACCAAAGCACTAAAAG...GGGCTTCTCACCTTTTTGCTGAATGTGGACATGTATTTCAGGACTTGCTGTCAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000090025.5
3UTR-3UTR CAA 90 bp ATGACAGCAAGTCCTGAAATACATGTCCACATTCAGCAAAAAGGTGAGAAGCCCCAAACTTTTAGTGCTTaGGTTGTCTTCCACCTCCAT +
Preference number: 3 (lower is better)
Translates to: MTASPEIHVHIQQKGEKPQTFSA*VVFHLH
Trigger: ATGGAGGTGGAAGACAACCAAAGCACTAAAAGTTTG...GGGCTTCTCACCTTTTTGCTGAATGTGGACATGTATTTCAGGACTTGCTGTCAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000090025.5
CDS-3UTR GCA 90 bp CAAGTCCTGAAATACATGTCCACATTCAGCAAAAAGGTGAGAAGCCCTTCTCGCGCTCCTTTCCTCCCGTaGTGCCGCTGCGGCCGCCGC +
Preference number: 4 (lower is better)
Translates to: QVLKYMSTFSKKVRSPSRAPFLP*CRCGRR
Trigger: GCGGCGGCCGCAGCGGCAGCACGGGAGGAAAGGAGC...GCGAGAAGGGCTTCTCACCTTTTTGCTGAATGTGGACATGTATTTCAGGACTTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000090025.5
CDS-3UTR GCA 90 bp CAAGTCCTGAAATACATGTCCACATTCAGCAAAAAGGTGAGAAGCCCTTCTCGCCGCGCTCCAGCTGCCTaGGGAGGTGCTCCAGCACCG +
Preference number: 4 (lower is better)
Translates to: QVLKYMSTFSKKVRSPSRRAPAA*GGAPAP
Trigger: CGGTGCTGGAGCACCTCCGCAGGCAGCTGGAGCGCG...GCGAGAAGGGCTTCTCACCTTTTTGCTGAATGTGGACATGTATTTCAGGACTTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000090025.5
CDS-3UTR GCA 90 bp CAAGTCCTGAAATACATGTCCACATTCAGCAAAAAGGTGAGAAGCCCTTCTCGCAAGGCGCGCTCCAGCTaGCTGCGGAGGTGCTCCAGC +
Preference number: 4 (lower is better)
Translates to: QVLKYMSTFSKKVRSPSRKARSS*LRRCSS
Trigger: GCTGGAGCACCTCCGCAGGCAGCTGGAGCGCGCCTT...GCGAGAAGGGCTTCTCACCTTTTTGCTGAATGTGGACATGTATTTCAGGACTTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000090025.5
CDS-3UTR CCA 90 bp CAAGTCCTGAAATACATGTCCACATTCAGCAAAAAGGTGAGAAGCCCTTCTCGCGCCAGCTGGTGGTTCTaGAAACGCAGTTCCAGCAGC +
Preference number: 4 (lower is better)
Translates to: QVLKYMSTFSKKVRSPSRASWWF*KRSSSS
Trigger: GCTGCTGGAACTGCGTTTCCAGAACCACCAGCTGGC...GCGAGAAGGGCTTCTCACCTTTTTGCTGAATGTGGACATGTATTTCAGGACTTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000090025.5
CDS-3UTR CCA 90 bp CAAGTCCTGAAATACATGTCCACATTCAGCAAAAAGGTGAGAAGCCCTTCTCGCTTGGAAGCTAGCTCCTaGTCCTGCCTCTTCTTCAGC +
Preference number: 4 (lower is better)
Translates to: QVLKYMSTFSKKVRSPSRLEASS*SCLFFS
Trigger: GCTGAAGAAGAGGCAGGACCAGGAGCTAGCTTCCAA...GCGAGAAGGGCTTCTCACCTTTTTGCTGAATGTGGACATGTATTTCAGGACTTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000090025.5
CDS-3UTR GCA 90 bp CAAGTCCTGAAATACATGTCCACATTCAGCAAAAAGGTGAGAAGCCCTTCTCGCCTCTTCTTCAGCTGCTaGATTTTCATGTTTAAATCC +
Preference number: 4 (lower is better)
Translates to: QVLKYMSTFSKKVRSPSRLFFSC*IFMFKS
Trigger: GGATTTAAACATGAAAATGCAGCAGCTGAAGAAGAG...GCGAGAAGGGCTTCTCACCTTTTTGCTGAATGTGGACATGTATTTCAGGACTTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000090025.5
CDS-3UTR GCA 90 bp CAAGTCCTGAAATACATGTCCACATTCAGCAAAAAGGTGAGAAGCCCTTCTCGCTGCCTCTTCTTCAGCTaGTGCATTTTCATGTTTAAA +
Preference number: 4 (lower is better)
Translates to: QVLKYMSTFSKKVRSPSRCLFFS*CIFMFK
Trigger: TTTAAACATGAAAATGCAGCAGCTGAAGAAGAGGCA...GCGAGAAGGGCTTCTCACCTTTTTGCTGAATGTGGACATGTATTTCAGGACTTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000090025.5
CDS GCA 90 bp CGCGCCCGCGTGCCGCCGCCCGCTGAAAGGCGCGCTCCAGCTGCCTaGGGAGGTGCTCCAGCACCGGGCTGGACGCCCGGACGTGCTCTG +
Preference number: 5 (lower is better)
Translates to: RARVPPPAERRAPAA*GGAPAPGWTPGRAL
Trigger: CAGAGCACGTCCGGGCGTCCAGCCCGGTGCTGGAGCACCTCCGCAGGCAGCTGGAGCGCGCCTTTCAGCGGGCGGCGGCACGCGGGCGCG
78% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090025.5
CDS GCA 90 bp GCAGTTCCAGCAGCTCCGCGCGCAGCCGGGCCAGGGCGCACTCCATaGGCGTCCGGCTCCTTTCCTCCCGTGCTGCCGCTGCGGCCGCCG +
Preference number: 5 (lower is better)
Translates to: AVPAAPRAAGPGRTP*ASGSFPPVLPLRPP
Trigger: CGGCGGCCGCAGCGGCAGCACGGGAGGAAAGGAGCCGGACGCGCATGGAGTGCGCCCTGGCCCGGCTGCGCGCGGAGCTGCTGGAACTGC
77% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090025.5
CDS CCA 90 bp CCTGCGGAGGTGCTCCAGCACCGGGCTGGACGCCCGGACGTGCTCTaGCACTTCGATGCCGATGCGCCAGGTGCCGCAAGGCATGCGGTG +
Preference number: 5 (lower is better)
Translates to: PAEVLQHRAGRPDVL*HFDADAPGAARHAV
Trigger: CACCGCATGCCTTGCGGCACCTGGCGCATCGGCATCGAAGTGCCAGAGCACGTCCGGGCGTCCAGCCCGGTGCTGGAGCACCTCCGCAGG
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090025.5
CDS CCA 90 bp ATTTTCATGTTTAAATCCAGTAAAGTTCGGGCCAGCTGGTGGTTCTaGAAACGCAGTTCCAGCAGCTCCGCGCGCAGCCGGGCCAGGGCG +
Preference number: 5 (lower is better)
Translates to: IFMFKSSKVRASWWF*KRSSSSSARSRARA
Trigger: CGCCCTGGCCCGGCTGCGCGCGGAGCTGCTGGAACTGCGTTTCCAGAACCACCAGCTGGCCCGAACTTTACTGGATTTAAACATGAAAAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090025.5
CDS CCA 90 bp TGCTGCATTTTCATGTTTAAATCCAGTAAAGTTCGGGCCAGCTGGTaGTTCTGGAAACGCAGTTCCAGCAGCTCCGCGCGCAGCCGGGCC +
Preference number: 5 (lower is better)
Translates to: CCIFMFKSSKVRASW*FWKRSSSSSARSRA
Trigger: GGCCCGGCTGCGCGCGGAGCTGCTGGAACTGCGTTTCCAGAACCACCAGCTGGCCCGAACTTTACTGGATTTAAACATGAAAATGCAGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090025.5
CDS CCA 90 bp AGCTGCTGCATTTTCATGTTTAAATCCAGTAAAGTTCGGGCCAGCTaGTGGTTCTGGAAACGCAGTTCCAGCAGCTCCGCGCGCAGCCGG +
Preference number: 5 (lower is better)
Translates to: SCCIFMFKSSKVRAS*WFWKRSSSSSARSR
Trigger: CCGGCTGCGCGCGGAGCTGCTGGAACTGCGTTTCCAGAACCACCAGCTGGCCCGAACTTTACTGGATTTAAACATGAAAATGCAGCAGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090025.5
CDS CCA 90 bp TTCCACACTCGGAATTCATCTCCTTATCCTGCGGGCTCTGGGGTTTaGAAGCTAGCTCCTGGTCCTGCCTCTTCTTCAGCTGCTGCATTT +
Preference number: 5 (lower is better)
Translates to: FHTRNSSPYPAGSGV*KLAPGPASSSAAAF
Trigger: AAATGCAGCAGCTGAAGAAGAGGCAGGACCAGGAGCTAGCTTCCAAACCCCAGAGCCCGCAGGATAAGGAGATGAATTCCGAGTGTGGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090025.5
CDS GCA 90 bp CTCTGGGGTTTGGAAGCTAGCTCCTGGTCCTGCCTCTTCTTCAGCTaGTGCATTTTCATGTTTAAATCCAGTAAAGTTCGGGCCAGCTGG +
Preference number: 5 (lower is better)
Translates to: LWGLEASSWSCLFFS*CIFMFKSSKVRASW
Trigger: CCAGCTGGCCCGAACTTTACTGGATTTAAACATGAAAATGCAGCAGCTGAAGAAGAGGCAGGACCAGGAGCTAGCTTCCAAACCCCAGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000090025.5
CDS GCA 72 bp GCAGCTCCGCGCGCAGCCGGGCCAGGGCGCACTCCATaGGCGTCCGGCTCCTTTCCTCCCGTGCTGCCGCTG +
Preference number: 6 (lower is better)
Translates to: AAPRAAGPGRTP*ASGSFPPVLPL
Trigger: CAGCGGCAGCACGGGAGGAAAGGAGCCGGACGCGCATGGAGTGCGCCCTGGCCCGGCTGCGCGCGGAGCTGC
76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090025.5
CDS GCA 72 bp CGGAGGTGCTCCAGCACCGGGCTGGACGCCCGGACGTaGTCTGGCACTTCGATGCCGATGCGCCAGGTGCCG +
Preference number: 6 (lower is better)
Translates to: RRCSSTGLDART*SGTSMPMRQVP
Trigger: CGGCACCTGGCGCATCGGCATCGAAGTGCCAGAGCACGTCCGGGCGTCCAGCCCGGTGCTGGAGCACCTCCG
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090025.5
CDS CCA 72 bp GTGCTCCAGCACCGGGCTGGACGCCCGGACGTGCTCTaGCACTTCGATGCCGATGCGCCAGGTGCCGCAAGG +
Preference number: 6 (lower is better)
Translates to: VLQHRAGRPDVL*HFDADAPGAAR
Trigger: CCTTGCGGCACCTGGCGCATCGGCATCGAAGTGCCAGAGCACGTCCGGGCGTCCAGCCCGGTGCTGGAGCAC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090025.5
CDS CCA 72 bp GCTCCAGCTGCCTGCGGAGGTGCTCCAGCACCGGGCTaGACGCCCGGACGTGCTCTGGCACTTCGATGCCGA +
Preference number: 6 (lower is better)
Translates to: APAACGGAPAPG*TPGRALALRCR
Trigger: TCGGCATCGAAGTGCCAGAGCACGTCCGGGCGTCCAGCCCGGTGCTGGAGCACCTCCGCAGGCAGCTGGAGC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090025.5
CDS CCA 72 bp TTTAAATCCAGTAAAGTTCGGGCCAGCTGGTGGTTCTaGAAACGCAGTTCCAGCAGCTCCGCGCGCAGCCGG +
Preference number: 6 (lower is better)
Translates to: FKSSKVRASWWF*KRSSSSSARSR
Trigger: CCGGCTGCGCGCGGAGCTGCTGGAACTGCGTTTCCAGAACCACCAGCTGGCCCGAACTTTACTGGATTTAAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090025.5
CDS CCA 72 bp TTCATGTTTAAATCCAGTAAAGTTCGGGCCAGCTGGTaGTTCTGGAAACGCAGTTCCAGCAGCTCCGCGCGC +
Preference number: 6 (lower is better)
Translates to: FMFKSSKVRASW*FWKRSSSSSAR
Trigger: GCGCGCGGAGCTGCTGGAACTGCGTTTCCAGAACCACCAGCTGGCCCGAACTTTACTGGATTTAAACATGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090025.5
CDS GCA 72 bp TGCGGGCTCTGGGGTTTGGAAGCTAGCTCCTGGTCCTaGCTCTTCTTCAGCTGCTGCATTTTCATGTTTAAA +
Preference number: 6 (lower is better)
Translates to: CGLWGLEASSWS*LFFSCCIFMFK
Trigger: TTTAAACATGAAAATGCAGCAGCTGAAGAAGAGGCAGGACCAGGAGCTAGCTTCCAAACCCCAGAGCCCGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000090025.5
CDS GCA 72 bp TTGGAAGCTAGCTCCTGGTCCTGCCTCTTCTTCAGCTaGTGCATTTTCATGTTTAAATCCAGTAAAGTTCGG +
Preference number: 6 (lower is better)
Translates to: LEASSWSCLFFS*CIFMFKSSKVR
Trigger: CCGAACTTTACTGGATTTAAACATGAAAATGCAGCAGCTGAAGAAGAGGCAGGACCAGGAGCTAGCTTCCAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090025.5