Pregenerated sensors for A26C2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000109344

Ensembl transcript IDs: ENSMUST00000207359.2

Found 14 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	TCAAGAAGACAGGTGGCAATATCTGGACTGTTAACATATACCGCCTaGTGTAGTGCTGTTTCTCCATTGAAATCTTTACAATTGGGATCT	+
Preference number: 5 (lower is better) Translates to: SRRQVAISGLLTYTA*CSAVSPLKSLQLGS Trigger: AGATCCCAATTGTAAAGATTTCAATGGAGAAACAGCACTACATCAGGCGGTATATGTTAACAGTCCAGATATTGCCACCTGTCTTCTTGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000207359.2
CDS GCA 90 bp	TTGCTTGACAATGGCTTCAGAATCACATTGAACAGCATACATGAGTaGTGTTCTTTGATAATCATCCCAGGCATGAATATTTGCACCATT	+
Preference number: 5 (lower is better) Translates to: LLDNGFRITLNSIHE*CSLIIIPGMNICTI Trigger: AATGGTGCAAATATTCATGCCTGGGATGATTATCAAAGAACAGCACTCATGTATGCTGTTCAATGTGATTCTGAAGCCATTGTCAAGCAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000207359.2
CDS CCA 90 bp	AAACAATCTTTGTCTCCCAGCTTTGTACAGCCTTCATTAATGGTGTaGCCTTTTGATCATCAAGGGCATTTATCATGCAGTCATTATATA	+
Preference number: 5 (lower is better) Translates to: KQSLSPSFVQPSLMV*PFDHQGHLSCSHYI Trigger: TATATAATGACTGCATGATAAATGCCCTTGATGATCAAAAGGCCACACCATTAATGAAGGCTGTACAAAGCTGGGAGACAAAGATTGTTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000207359.2
CDS GCA 72 bp	GTGAGTCCTCATAGTCCAAAATTAAACTCCTTACTTTaGGTTTCCCTGCCACTGCATACTGAAGTGCACTCC	+
Preference number: 6 (lower is better) Translates to: VSPHSPKLNSLL*VSLPLHTEVHS Trigger: GGAGTGCACTTCAGTATGCAGTGGCAGGGAAACGCAAAGTAAGGAGTTTAATTTTGGACTATGAGGACTCAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000207359.2
CDS TCA 72 bp	AAACTCCTTACTTTGCGTTTCCCTGCCACTGCATACTaGAGTGCACTCCATCCAAATGCATCCTTTAAGGAA	+
Preference number: 6 (lower is better) Translates to: KLLTLRFPATAY*SALHPNASFKE Trigger: TTCCTTAAAGGATGCATTTGGATGGAGTGCACTTCAGTATGCAGTGGCAGGGAAACGCAAAGTAAGGAGTTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000207359.2
CDS CCA 72 bp	CTTTCCCATGCACACTGCTTCATGGAATTTATTATCTaGATCATAAGACTGGCCATACCTGTCTTGACTACA	+
Preference number: 6 (lower is better) Translates to: LSHAHCFMEFII*IIRLAIPVLTT Trigger: TGTAGTCAAGACAGGTATGGCCAGTCTTATGATCCAGATAATAAATTCCATGAAGCAGTGTGCATGGGAAAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000207359.2
CDS CCA 72 bp	CATGCGAAGTGCAGTGCAGTTCGTTTTCCTTTGTCCTaGTCATTTATGGTAAATTTCTTCTTAGAGAGGAGA	+
Preference number: 6 (lower is better) Translates to: HAKCSAVRFPLS*SFMVNFFLERR Trigger: TCTCCTCTCTAAGAAGAAATTTACCATAAATGACCAGGACAAAGGAAAACGAACTGCACTGCACTTCGCATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000207359.2
CDS TCA 72 bp	CAGGTGGCAATATCTGGACTGTTAACATATACCGCCTaGTGTAGTGCTGTTTCTCCATTGAAATCTTTACAA	+
Preference number: 6 (lower is better) Translates to: QVAISGLLTYTA*CSAVSPLKSLQ Trigger: TTGTAAAGATTTCAATGGAGAAACAGCACTACATCAGGCGGTATATGTTAACAGTCCAGATATTGCCACCTG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000207359.2
CDS GCA 72 bp	GAGATGCAGCACCACTTTAATCTTTCCCATGCACACTaGTTCATGGAATTTATTATCTGGATCATAAGACTG	+
Preference number: 6 (lower is better) Translates to: EMQHHFNLSHAH*FMEFIIWIIRL Trigger: CAGTCTTATGATCCAGATAATAAATTCCATGAAGCAGTGTGCATGGGAAAGATTAAAGTGGTGCTGCATCTC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000207359.2
CDS TCA 72 bp	CAGCTTTGTACAGCCTTCATTAATGGTGTGGCCTTTTaGTCATCAAGGGCATTTATCATGCAGTCATTATAT	+
Preference number: 6 (lower is better) Translates to: QLCTAFINGVAF*SSRAFIMQSLY Trigger: ATATAATGACTGCATGATAAATGCCCTTGATGATCAAAAGGCCACACCATTAATGAAGGCTGTACAAAGCTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000207359.2
CDS TCA 72 bp	TTAAGGAATGATCAACACCTTTCTCCAGTAATTGCTTaGCAATGGCTTCAGAATCACATTGAACAGCATACA	+
Preference number: 6 (lower is better) Translates to: LRNDQHLSPVIA*QWLQNHIEQHT Trigger: TGTATGCTGTTCAATGTGATTCTGAAGCCATTGTCAAGCAATTACTGGAGAAAGGTGTTGATCATTCCTTAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000207359.2
CDS GCA 72 bp	TGCTGTTTCTCCATTGAAATCTTTACAATTGGGATCTaGTCCATTATCAAGGAGGACAGAAACAATCTTTGT	+
Preference number: 6 (lower is better) Translates to: CCFSIEIFTIGI*SIIKEDRNNLC Trigger: ACAAAGATTGTTTCTGTCCTCCTTGATAATGGAGCAGATCCCAATTGTAAAGATTTCAATGGAGAAACAGCA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000207359.2
CDS GCA 72 bp	AATGGCTTCAGAATCACATTGAACAGCATACATGAGTaGTGTTCTTTGATAATCATCCCAGGCATGAATATT	+
Preference number: 6 (lower is better) Translates to: NGFRITLNSIHE*CSLIIIPGMNI Trigger: AATATTCATGCCTGGGATGATTATCAAAGAACAGCACTCATGTATGCTGTTCAATGTGATTCTGAAGCCATT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000207359.2
CDS CAA 72 bp	AGAATCACATTGAACAGCATACATGAGTGCTGTTCTTaGATAATCATCCCAGGCATGAATATTTGCACCATT	+
Preference number: 6 (lower is better) Translates to: RITLNSIHECCS*IIIPGMNICTI Trigger: AATGGTGCAAATATTCATGCCTGGGATGATTATCAAAGAACAGCACTCATGTATGCTGTTCAATGTGATTCT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000207359.2

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu