RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for A1CF (Mus musculus)

Ensembl gene IDs: ENSMUSG00000052595

Ensembl transcript IDs: ENSMUST00000075838.8, ENSMUST00000224304.2, ENSMUST00000224400.2, ENSMUST00000224564.2

Found 207 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GGTTGCAGGGACAGGAGGATGCTGACCTATGACAGGCGAACAGTGTaGAATGTCCAGACCAAAAGTGAGAAGGAATCTATAATGTTTCAG +
Preference number: 1 (lower is better)
Translates to: GCRDRRMLTYDRRTV*NVQTKSEKESIMFQ
Trigger: CTGAAACATTATAGATTCCTTCTCACTTTTGGTCTGGACATTCCACACTGTTCGCCTGTCATAGGTCAGCATCCTCCTGTCCCTGCAACC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
3UTR TCA 90 bp TCTCAGGAAAGGCATTGCTTTGGGGGAAGGTATGACTTGTGGTCATaGGGGATCTGGCTAGAGGTTCGTATCTTCTACAGATCCTTCTAT +
Preference number: 1 (lower is better)
Translates to: SQERHCFGGRYDLWS*GIWLEVRIFYRSFY
Trigger: ATAGAAGGATCTGTAGAAGATACGAACCTCTAGCCAGATCCCTCATGACCACAAGTCATACCTTCCCCCAAAGCAATGCCTTTCCTGAGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
3UTR TCA 90 bp TCTTACAGAGCTTCCTGCTTTCCTCTGGTGTCTAAGTTCTGTGAATaGAGAAGCAGCTGCCAGCCAGTGACTAAGATGGGCATTTTACTG +
Preference number: 1 (lower is better)
Translates to: SYRASCFPLVSKFCE*RSSCQPVTKMGILL
Trigger: CAGTAAAATGCCCATCTTAGTCACTGGCTGGCAGCTGCTTCTTCATTCACAGAACTTAGACACCAGAGGAAAGCAGGAAGCTCTGTAAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
3UTR CCA 90 bp TCATCTTTCACTCTAGAACTTGGTACTGGCATGGTTTCTGTGATTTaGGAATCCTTGAGCAGGGAAAGGATTCTGAAGGAAAACAGTGGC +
Preference number: 1 (lower is better)
Translates to: SSFTLELGTGMVSVI*ESLSRERILKENSG
Trigger: GCCACTGTTTTCCTTCAGAATCCTTTCCCTGCTCAAGGATTCCCAAATCACAGAAACCATGCCAGTACCAAGTTCTAGAGTGAAAGATGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
3UTR TCA 90 bp TTGAGCAGGGAAAGGATTCTGAAGGAAAACAGTGGCTTAAAGAGTTaGATAAATACAGGGCTTGGATTTGTCTCAAGCATATCTGAAATA +
Preference number: 1 (lower is better)
Translates to: LSRERILKENSGLKS*INTGLGFVSSISEI
Trigger: TATTTCAGATATGCTTGAGACAAATCCAAGCCCTGTATTTATTCAACTCTTTAAGCCACTGTTTTCCTTCAGAATCCTTTCCCTGCTCAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
3UTR-3UTR TCA 90 bp TCATCTTTCACTCTAGAACTTGGTACTGGCATGGTTTCTGTGATTTGGGAATCCGGGACAGGAGGATGCTaGCCTATGACAGGCGAACAG +
Preference number: 2 (lower is better)
Translates to: SSFTLELGTGMVSVIWESGTGGC*PMTGEQ
Trigger: CTGTTCGCCTGTCATAGGTCAGCATCCTCCTGTCCC...GGATTCCCAAATCACAGAAACCATGCCAGTACCAAGTTCTAGAGTGAAAGATGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
3UTR-3UTR GCA 90 bp TCCACACTGTATGCAATGCTGAAGGCCTCTTACAGAGCTTCCTGCTTTCCTCTGTCTCAGGAAAGGCATTaGTTTGGGGGAAGGTATGAC +
Preference number: 2 (lower is better)
Translates to: STLYAMLKASYRASCFPLSQERH*FGGRYD
Trigger: GTCATACCTTCCCCCAAAGCAATGCCTTTCCTGAGA...CAGAGGAAAGCAGGAAGCTCTGTAAGAGGCCTTCAGCATTGCATACAGTGTGGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
3UTR-3UTR TCA 90 bp TCTGTGATTTGGGAATCCTTGAGCAGGGAAAGGATTCTGAAGGAAAACAGTGGCCTTTGGGGGAAGGTATaGCTTGTGGTCATGAGGGAT +
Preference number: 2 (lower is better)
Translates to: SVIWESLSRERILKENSGLWGKV*LVVMRD
Trigger: ATCCCTCATGACCACAAGTCATACCTTCCCCCAAAG...GCCACTGTTTTCCTTCAGAATCCTTTCCCTGCTCAAGGATTCCCAAATCACAGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
3UTR-3UTR TCA 90 bp ATACTCCACACTGTATGCAATGCTGAAGGCCTCTTACAGAGCTTCCTGCTTTCCTCTAAGTTCTGTGAATaGAGAAGCAGCTGCCAGCCA +
Preference number: 2 (lower is better)
Translates to: ILHTVCNAEGLLQSFLLSSKFCE*RSSCQP
Trigger: TGGCTGGCAGCTGCTTCTTCATTCACAGAACTTAGA...GGAAAGCAGGAAGCTCTGTAAGAGGCCTTCAGCATTGCATACAGTGTGGAGTAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
3UTR-3UTR CCA 90 bp GCTCAGCCTGGGATCATACTCCACACTGTATGCAATGCTGAAGGCCTCTTACAGGACACTCAGGATCCTTaGAAGAACAACTTTTGCTGT +
Preference number: 2 (lower is better)
Translates to: AQPGIILHTVCNAEGLLQDTQDP*KNNFCC
Trigger: ACAGCAAAAGTTGTTCTTCCAAGGATCCTGAGTGTC...CTGTAAGAGGCCTTCAGCATTGCATACAGTGTGGAGTATGATCCCAGGCTGAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
3UTR-3UTR CCA 90 bp TATGCAATGCTGAAGGCCTCTTACAGAGCTTCCTGCTTTCCTCTGGTGTCTAAGAGATGGGCATTTTACTaGCTGTGCCTTACTACGGAC +
Preference number: 2 (lower is better)
Translates to: YAMLKASYRASCFPLVSKRWAFY*LCLTTD
Trigger: GTCCGTAGTAAGGCACAGCCAGTAAAATGCCCATCT...CTTAGACACCAGAGGAAAGCAGGAAGCTCTGTAAGAGGCCTTCAGCATTGCATA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
3UTR CAA 90 bp TTACTACGGACTGCCCAGCTCTCTGTACTAAGAGCATATGCTAATTaGTCAGGGTGTTATCCTCTTCCTGAGACACTCAGGATCCTTGGA +
Preference number: 2 (lower is better)
Translates to: LLRTAQLSVLRAYAN*SGCYPLPETLRILG
Trigger: TCCAAGGATCCTGAGTGTCTCAGGAAGAGGATAACACCCTGACAAATTAGCATATGCTCTTAGTACAGAGAGCTGGGCAGTCCGTAGTAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
3UTR-3UTR TCA 90 bp AAGTCATCTTTCACTCTAGAACTTGGTACTGGCATGGTTTCTGTGATTTGGGAAGAGGATGCTGACCTATaGCAGGCGAACAGTGTGGAA +
Preference number: 2 (lower is better)
Translates to: KSSFTLELGTGMVSVIWEEDADL*QANSVE
Trigger: TTCCACACTGTTCGCCTGTCATAGGTCAGCATCCTC...TTCCCAAATCACAGAAACCATGCCAGTACCAAGTTCTAGAGTGAAAGATGACTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
3UTR CAA 90 bp GTCCAGACCAAAAGTGAGAAGGAATCTATAATGTTTCAGACAGTTTaGCTGAGCTCAGCCTGGGATCATACTCCACACTGTATGCAATGC +
Preference number: 2 (lower is better)
Translates to: VQTKSEKESIMFQTV*LSSAWDHTPHCMQC
Trigger: GCATTGCATACAGTGTGGAGTATGATCCCAGGCTGAGCTCAGCAAAACTGTCTGAAACATTATAGATTCCTTCTCACTTTTGGTCTGGAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
3UTR CAA 90 bp GTCATCTTTCACTCTAGAACTTGGTACTGGCATGGTTTCTGTGATTaGGGAATCCTTGAGCAGGGAAAGGATTCTGAAGGAAAACAGTGG +
Preference number: 2 (lower is better)
Translates to: VIFHSRTWYWHGFCD*GILEQGKDSEGKQW
Trigger: CCACTGTTTTCCTTCAGAATCCTTTCCCTGCTCAAGGATTCCCAAATCACAGAAACCATGCCAGTACCAAGTTCTAGAGTGAAAGATGAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
3UTR-3UTR CCA 90 bp AAGTCATCTTTCACTCTAGAACTTGGTACTGGCATGGTTTCTGTGATTTGGGAATTGCTGAGCTCAGCCTaGGATCATACTCCACACTGT +
Preference number: 2 (lower is better)
Translates to: KSSFTLELGTGMVSVIWELLSSA*DHTPHC
Trigger: ACAGTGTGGAGTATGATCCCAGGCTGAGCTCAGCAA...TTCCCAAATCACAGAAACCATGCCAGTACCAAGTTCTAGAGTGAAAGATGACTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
3UTR-3UTR CCA 90 bp TCATCTTTCACTCTAGAACTTGGTACTGGCATGGTTTCTGTGATTTGGGAATCCGACAGGCGAACAGTGTaGAATGTCCAGACCAAAAGT +
Preference number: 2 (lower is better)
Translates to: SSFTLELGTGMVSVIWESDRRTV*NVQTKS
Trigger: ACTTTTGGTCTGGACATTCCACACTGTTCGCCTGTC...GGATTCCCAAATCACAGAAACCATGCCAGTACCAAGTTCTAGAGTGAAAGATGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
3UTR CAA 90 bp ACTCTAGAACTTGGTACTGGCATGGTTTCTGTGATTTGGGAATCCTaGAGCAGGGAAAGGATTCTGAAGGAAAACAGTGGCTTAAAGAGT +
Preference number: 2 (lower is better)
Translates to: TLELGTGMVSVIWES*SRERILKENSGLKS
Trigger: ACTCTTTAAGCCACTGTTTTCCTTCAGAATCCTTTCCCTGCTCAAGGATTCCCAAATCACAGAAACCATGCCAGTACCAAGTTCTAGAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
3UTR-3UTR TCA 90 bp ATAGTTTCACTATCAAGGGACTCAGTCATAGTAAAGCCAGCTGCACATATTGAAGTGTTATCCTCTTCCTaGGACACTCAGGATCCTTGG +
Preference number: 2 (lower is better)
Translates to: IVSLSRDSVIVKPAAHIEVLSSS*DTQDPW
Trigger: CCAAGGATCCTGAGTGTCTCAGGAAGAGGATAACAC...TTCAATATGTGCAGCTGGCTTTACTATGACTGAGTCCCTTGATAGTGAAACTAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075838.8
3UTR-3UTR TCA 90 bp CAGTGGCTTAAAGAGTTGAATAAATACAGGGCTTGGATTTGTCTCAAGCATATCGTGTTATCCTCTTCCTaGGACACTCAGGATCCTTGG +
Preference number: 2 (lower is better)
Translates to: QWLKELNKYRAWICLKHIVLSSS*DTQDPW
Trigger: CCAAGGATCCTGAGTGTCTCAGGAAGAGGATAACAC...GATATGCTTGAGACAAATCCAAGCCCTGTATTTATTCAACTCTTTAAGCCACTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
3UTR-3UTR GCA 90 bp TCATCTTTCACTCTAGAACTTGGTACTGGCATGGTTTCTGTGATTTGGGAATCCTGGAAGAACAACTTTTaGTGTCCGTGGATCTTCAGG +
Preference number: 2 (lower is better)
Translates to: SSFTLELGTGMVSVIWESWKNNF*CPWIFR
Trigger: CCTGAAGATCCACGGACAGCAAAAGTTGTTCTTCCA...GGATTCCCAAATCACAGAAACCATGCCAGTACCAAGTTCTAGAGTGAAAGATGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
3UTR-3UTR TCA 90 bp CAGTGGCTTAAAGAGTTGAATAAATACAGGGCTTGGATTTGTCTCAAGCATATCTCTAAGTTCTGTGAATaGAGAAGCAGCTGCCAGCCA +
Preference number: 2 (lower is better)
Translates to: QWLKELNKYRAWICLKHISKFCE*RSSCQP
Trigger: TGGCTGGCAGCTGCTTCTTCATTCACAGAACTTAGA...GATATGCTTGAGACAAATCCAAGCCCTGTATTTATTCAACTCTTTAAGCCACTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
3UTR-3UTR GCA 90 bp ATAGTTTCACTATCAAGGGACTCAGTCATAGTAAAGCCAGCTGCACATATTGAATCTCAGGAAAGGCATTaGTTTGGGGGAAGGTATGAC +
Preference number: 2 (lower is better)
Translates to: IVSLSRDSVIVKPAAHIESQERH*FGGRYD
Trigger: GTCATACCTTCCCCCAAAGCAATGCCTTTCCTGAGA...TTCAATATGTGCAGCTGGCTTTACTATGACTGAGTCCCTTGATAGTGAAACTAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000075838.8
3UTR-3UTR GCA 90 bp AAGTCATCTTTCACTCTAGAACTTGGTACTGGCATGGTTTCTGTGATTTGGGAATCTTACAGAGCTTCCTaGTTTCCTCTGGTGTCTAAG +
Preference number: 2 (lower is better)
Translates to: KSSFTLELGTGMVSVIWESYRAS*FPLVSK
Trigger: CTTAGACACCAGAGGAAAGCAGGAAGCTCTGTAAGA...TTCCCAAATCACAGAAACCATGCCAGTACCAAGTTCTAGAGTGAAAGATGACTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
3UTR-3UTR CCA 90 bp TCATCTTTCACTCTAGAACTTGGTACTGGCATGGTTTCTGTGATTTGGGAATCCAACTTTTGCTGTCCGTaGATCTTCAGGTTTCTGCTT +
Preference number: 2 (lower is better)
Translates to: SSFTLELGTGMVSVIWESNFCCP*IFRFLL
Trigger: AAGCAGAAACCTGAAGATCCACGGACAGCAAAAGTT...GGATTCCCAAATCACAGAAACCATGCCAGTACCAAGTTCTAGAGTGAAAGATGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
3UTR-3UTR CCA 90 bp GATTTGGGAATCCTTGAGCAGGGAAAGGATTCTGAAGGAAAACAGTGGCTTAAAGACACTCAGGATCCTTaGAAGAACAACTTTTGCTGT +
Preference number: 2 (lower is better)
Translates to: DLGILEQGKDSEGKQWLKDTQDP*KNNFCC
Trigger: ACAGCAAAAGTTGTTCTTCCAAGGATCCTGAGTGTC...TTTAAGCCACTGTTTTCCTTCAGAATCCTTTCCCTGCTCAAGGATTCCCAAATC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
3UTR-3UTR TCA 90 bp TCCTTTTTACATGTATATAGCCTCCCTCCCCCAGTCACTATCAGATGGTCTAAAAAGCAACACTTTTACTaGATGCTAAAAGGGATGGTC +
Preference number: 2 (lower is better)
Translates to: SFLHVYSLPPPVTIRWSKKQHFY*MLKGMV
Trigger: GACCATCCCTTTTAGCATTCAGTAAAAGTGTTGCTT...TTTAGACCATCTGATAGTGACTGGGGGAGGGAGGCTATATACATGTAAAAAGGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 23 nt.
Matches the following 1 transcripts:
ENSMUST00000075838.8
3UTR-3UTR CCA 90 bp TTGTCTCAAGCATATCTGAAATACATTGTACTGATTTCTAGAAAGTCCCCAGAGAGATGGGCATTTTACTaGCTGTGCCTTACTACGGAC +
Preference number: 2 (lower is better)
Translates to: LSQAYLKYIVLISRKSPERWAFY*LCLTTD
Trigger: GTCCGTAGTAAGGCACAGCCAGTAAAATGCCCATCT...CTCTGGGGACTTTCTAGAAATCAGTACAATGTATTTCAGATATGCTTGAGACAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
3UTR-3UTR CCA 90 bp ACATTACATCCTTTTTACATGTATATAGCCTCCCTCCCCCAGTCACTATCAGATCTTCCTGCTTTCCTCTaGTGTCTAAGTTCTGTGAAT +
Preference number: 2 (lower is better)
Translates to: TLHPFYMYIASLPQSLSDLPAFL*CLSSVN
Trigger: ATTCACAGAACTTAGACACCAGAGGAAAGCAGGAAG...ATCTGATAGTGACTGGGGGAGGGAGGCTATATACATGTAAAAAGGATGTAATGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000075838.8
3UTR TCA 72 bp CCCCAGAGGTTGCAGGGACAGGAGGATGCTGACCTATaGCAGGCGAACAGTGTGGAATGTCCAGACCAAAAG +
Preference number: 3 (lower is better)
Translates to: PQRLQGQEDADL*QANSVECPDQK
Trigger: CTTTTGGTCTGGACATTCCACACTGTTCGCCTGTCATAGGTCAGCATCCTCCTGTCCCTGCAACCTCTGGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
3UTR TCA 72 bp AGAAAGTCCCCAGAGGTTGCAGGGACAGGAGGATGCTaGCCTATGACAGGCGAACAGTGTGGAATGTCCAGA +
Preference number: 3 (lower is better)
Translates to: RKSPEVAGTGGC*PMTGEQCGMSR
Trigger: TCTGGACATTCCACACTGTTCGCCTGTCATAGGTCAGCATCCTCCTGTCCCTGCAACCTCTGGGGACTTTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
3UTR TCA 72 bp GTGGTCTCAGGAAAGGCATTGCTTTGGGGGAAGGTATaGCTTGTGGTCATGAGGGATCTGGCTAGAGGTTCG +
Preference number: 3 (lower is better)
Translates to: VVSGKALLWGKV*LVVMRDLARGS
Trigger: CGAACCTCTAGCCAGATCCCTCATGACCACAAGTCATACCTTCCCCCAAAGCAATGCCTTTCCTGAGACCAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
3UTR TCA 72 bp GCTTCCTGCTTTCCTCTGGTGTCTAAGTTCTGTGAATaGAGAAGCAGCTGCCAGCCAGTGACTAAGATGGGC +
Preference number: 3 (lower is better)
Translates to: ASCFPLVSKFCE*RSSCQPVTKMG
Trigger: GCCCATCTTAGTCACTGGCTGGCAGCTGCTTCTTCATTCACAGAACTTAGACACCAGAGGAAAGCAGGAAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
3UTR TCA 72 bp TCAGCCTGGGATCATACTCCACACTGTATGCAATGCTaGAGGCCTCTTACAGAGCTTCCTGCTTTCCTCTGG +
Preference number: 3 (lower is better)
Translates to: SAWDHTPHCMQC*RPLTELPAFLW
Trigger: CCAGAGGAAAGCAGGAAGCTCTGTAAGAGGCCTTCAGCATTGCATACAGTGTGGAGTATGATCCCAGGCTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
3UTR-3UTR CAA 90 bp GCTCAGCCTGGGATCATACTCCACACTGTATGCAATGCTGAAGGCCTCTTACAGAGACACTCAGGATCCTaGGAAGAACAACTTTTGCTG +
Preference number: 3 (lower is better)
Translates to: AQPGIILHTVCNAEGLLQRHSGS*EEQLLL
Trigger: CAGCAAAAGTTGTTCTTCCAAGGATCCTGAGTGTCT...CTGTAAGAGGCCTTCAGCATTGCATACAGTGTGGAGTATGATCCCAGGCTGAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
3UTR-3UTR CAA 90 bp GTTTCACTATCAAGGGACTCAGTCATAGTAAAGCCAGCTGCACATATTGAAAGAGAAAGTCCCCAGAGGTaGCAGGGACAGGAGGATGCT +
Preference number: 3 (lower is better)
Translates to: VSLSRDSVIVKPAAHIERESPQR*QGQEDA
Trigger: AGCATCCTCCTGTCCCTGCAACCTCTGGGGACTTTC...TCTTTCAATATGTGCAGCTGGCTTTACTATGACTGAGTCCCTTGATAGTGAAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075838.8
3UTR CCA 72 bp GACAGGAGGATGCTGACCTATGACAGGCGAACAGTGTaGAATGTCCAGACCAAAAGTGAGAAGGAATCTATA +
Preference number: 3 (lower is better)
Translates to: DRRMLTYDRRTV*NVQTKSEKESI
Trigger: TATAGATTCCTTCTCACTTTTGGTCTGGACATTCCACACTGTTCGCCTGTCATAGGTCAGCATCCTCCTGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
3UTR CCA 72 bp ACTCTAGAACTTGGTACTGGCATGGTTTCTGTGATTTaGGAATCCTTGAGCAGGGAAAGGATTCTGAAGGAA +
Preference number: 3 (lower is better)
Translates to: TLELGTGMVSVI*ESLSRERILKE
Trigger: TTCCTTCAGAATCCTTTCCCTGCTCAAGGATTCCCAAATCACAGAAACCATGCCAGTACCAAGTTCTAGAGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
3UTR CCA 72 bp CATGTATATAGCCTCCCTCCCCCAGTCACTATCAGATaGTCTAAATTGGGACATTTTGGAAAGCAACACTTT +
Preference number: 3 (lower is better)
Translates to: HVYSLPPPVTIR*SKLGHFGKQHF
Trigger: AAAGTGTTGCTTTCCAAAATGTCCCAATTTAGACCATCTGATAGTGACTGGGGGAGGGAGGCTATATACATG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000075838.8
3UTR-3UTR CAA 90 bp GAACTGGGTAGAGAACTCAAAGGTAACCTCAATTTTAATGCAACTTCTTGGAGACAGTGGCTTAAAGAGTaGAATAAATACAGGGCTTGG +
Preference number: 3 (lower is better)
Translates to: ELGRELKGNLNFNATSWRQWLKE*NKYRAW
Trigger: CCAAGCCCTGTATTTATTCAACTCTTTAAGCCACTG...TCTCCAAGAAGTTGCATTAAAATTGAGGTTACCTTTGAGTTCTCTACCCAGTTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075838.8
3UTR TCA 72 bp GAAAGGATTCTGAAGGAAAACAGTGGCTTAAAGAGTTaGATAAATACAGGGCTTGGATTTGTCTCAAGCATA +
Preference number: 3 (lower is better)
Translates to: ERILKENSGLKS*INTGLGFVSSI
Trigger: TATGCTTGAGACAAATCCAAGCCCTGTATTTATTCAACTCTTTAAGCCACTGTTTTCCTTCAGAATCCTTTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
3UTR TCA 72 bp TTTGTAGTTTTTGGGATCAGCAAAATGAGTCTGAGATaGAAGCAAATGAGTATGGACAAGCCAGAATTTCCT +
Preference number: 3 (lower is better)
Translates to: FVVFGISKMSLR*KQMSMDKPEFP
Trigger: AGGAAATTCTGGCTTGTCCATACTCATTTGCTTTCATCTCAGACTCATTTTGCTGATCCCAAAAACTACAAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
CDS-3UTR GCA 90 bp CTCTTCCTGAGACACTCAGGATCCTTGGAAGAACAACTTTTGCTGTCCGTGGATGACCAGTGCGCGGAGTaGCGCTTCCTTCTGGGTGCC +
Preference number: 4 (lower is better)
Translates to: LFLRHSGSLEEQLLLSVDDQCAE*RFLLGA
Trigger: GGCACCCAGAAGGAAGCGGCACTCCGCGCACTGGTC...ATCCACGGACAGCAAAAGTTGTTCTTCCAAGGATCCTGAGTGTCTCAGGAAGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
CDS-3UTR GCA 90 bp CACTCAGGATCCTTGGAAGAACAACTTTTGCTGTCCGTGGATCTTCAGGTTTCTGCAGCATGGTGTTCCTaGCACCGGTGCCCCGGGTGT +
Preference number: 4 (lower is better)
Translates to: HSGSLEEQLLLSVDLQVSAAWCS*HRCPGC
Trigger: ACACCCGGGGCACCGGTGGCAGGAACACCATGCTGC...AGAAACCTGAAGATCCACGGACAGCAAAAGTTGTTCTTCCAAGGATCCTGAGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
CDS-3UTR CCA 90 bp CACACTGTATGCAATGCTGAAGGCCTCTTACAGAGCTTCCTGCTTTCCTCTGGTCTATATCCTGTGCGCTaGACCAGTGCGCGGAGTGCC +
Preference number: 4 (lower is better)
Translates to: HTVCNAEGLLQSFLLSSGLYPVR*TSARSA
Trigger: GGCACTCCGCGCACTGGTCCAGCGCACAGGATATAG...ACCAGAGGAAAGCAGGAAGCTCTGTAAGAGGCCTTCAGCATTGCATACAGTGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
CDS-3UTR TCA 90 bp GCTCAGCCTGGGATCATACTCCACACTGTATGCAATGCTGAAGGCCTCTTACAGCAGTATTCATCGGGGTaGGCTCCATCCCAGGCAGAA +
Preference number: 4 (lower is better)
Translates to: AQPGIILHTVCNAEGLLQQYSSG*APSQAE
Trigger: TTCTGCCTGGGATGGAGCTCACCCCGATGAATACTG...CTGTAAGAGGCCTTCAGCATTGCATACAGTGTGGAGTATGATCCCAGGCTGAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
CDS-3UTR GCA 90 bp ATACGACGAATAAATCTTGTGGTCTCAGGAAAGGCATTGCTTTGGGGGAAGGTAGACCAGTGCGCGGAGTaGCGCTTCCTTCTGGGTGCC +
Preference number: 4 (lower is better)
Translates to: IRRINLVVSGKALLWGKVDQCAE*RFLLGA
Trigger: GGCACCCAGAAGGAAGCGGCACTCCGCGCACTGGTC...TACCTTCCCCCAAAGCAATGCCTTTCCTGAGACCACAAGATTTATTCGTCGTAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
CDS-3UTR CCA 90 bp GCTCAGCCTGGGATCATACTCCACACTGTATGCAATGCTGAAGGCCTCTTACAGATTCTCCTTGCAGCATaGTGTTCCTGCCACCGGTGC +
Preference number: 4 (lower is better)
Translates to: AQPGIILHTVCNAEGLLQILLAA*CSCHRC
Trigger: GCACCGGTGGCAGGAACACCATGCTGCAAGGAGAAT...CTGTAAGAGGCCTTCAGCATTGCATACAGTGTGGAGTATGATCCCAGGCTGAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
CDS-3UTR TCA 90 bp CACACTGTATGCAATGCTGAAGGCCTCTTACAGAGCTTCCTGCTTTCCTCTGGTCAGTATTCATCGGGGTaGGCTCCATCCCAGGCAGAA +
Preference number: 4 (lower is better)
Translates to: HTVCNAEGLLQSFLLSSGQYSSG*APSQAE
Trigger: TTCTGCCTGGGATGGAGCTCACCCCGATGAATACTG...ACCAGAGGAAAGCAGGAAGCTCTGTAAGAGGCCTTCAGCATTGCATACAGTGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
CDS-3UTR CCA 90 bp CTCAGGAAAGGCATTGCTTTGGGGGAAGGTATGACTTGTGGTCATGAGGGATCTAGAATCCCAGCCTGGTaGAGGGCCACCATACTTCCT +
Preference number: 4 (lower is better)
Translates to: LRKGIALGEGMTCGHEGSRIPAW*RATILP
Trigger: AGGAAGTATGGTGGCCCTCCACCAGGCTGGGATTCT...AGATCCCTCATGACCACAAGTCATACCTTCCCCCAAAGCAATGCCTTTCCTGAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
CDS-3UTR CCA 90 bp TCCACACTGTATGCAATGCTGAAGGCCTCTTACAGAGCTTCCTGCTTTCCTCTGTGGATTGCAGGATTCTaGCTGGCCAGCGCTGGGATA +
Preference number: 4 (lower is better)
Translates to: STLYAMLKASYRASCFPLWIAGF*LASAGI
Trigger: TATCCCAGCGCTGGCCAGCCAGAATCCTGCAATCCA...CAGAGGAAAGCAGGAAGCTCTGTAAGAGGCCTTCAGCATTGCATACAGTGTGGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
CDS-3UTR CCA 90 bp CTCTTCCTGAGACACTCAGGATCCTTGGAAGAACAACTTTTGCTGTCCGTGGATATCCTGGGAACACAGTaGCAGAAGTGGCCGTGGGTG +
Preference number: 4 (lower is better)
Translates to: LFLRHSGSLEEQLLLSVDILGTQ*QKWPWV
Trigger: CACCCACGGCCACTTCTGCCACTGTGTTCCCAGGAT...ATCCACGGACAGCAAAAGTTGTTCTTCCAAGGATCCTGAGTGTCTCAGGAAGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
CDS-3UTR CCA 90 bp CACTCAGGATCCTTGGAAGAACAACTTTTGCTGTCCGTGGATCTTCAGGTTTCTCAGGAGCGGTGGCACTaGGGACAGCATATCCTGGGA +
Preference number: 4 (lower is better)
Translates to: HSGSLEEQLLLSVDLQVSQERWH*GQHILG
Trigger: TCCCAGGATATGCTGTCCCCAGTGCCACCGCTCCTG...AGAAACCTGAAGATCCACGGACAGCAAAAGTTGTTCTTCCAAGGATCCTGAGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
CDS-3UTR TCA 90 bp TCCACACTGTATGCAATGCTGAAGGCCTCTTACAGAGCTTCCTGCTTTCCTCTGCTCTCTTGTCTCCTTTaGCGTGGTATCCTCGACCCA +
Preference number: 4 (lower is better)
Translates to: STLYAMLKASYRASCFPLLSCLL*RGILDP
Trigger: TGGGTCGAGGATACCACGTCAAAGGAGACAAGAGAG...CAGAGGAAAGCAGGAAGCTCTGTAAGAGGCCTTCAGCATTGCATACAGTGTGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
CDS-3UTR CCA 90 bp CACACTGTATGCAATGCTGAAGGCCTCTTACAGAGCTTCCTGCTTTCCTCTGGTACTGTCCTTGTCCACTaGCTTGGCCAAGGTCACTTC +
Preference number: 4 (lower is better)
Translates to: HTVCNAEGLLQSFLLSSGTVLVH*LGQGHF
Trigger: GAAGTGACCTTGGCCAAGCCAGTGGACAAGGACAGT...ACCAGAGGAAAGCAGGAAGCTCTGTAAGAGGCCTTCAGCATTGCATACAGTGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
CDS-3UTR CCA 90 bp CACACTGTATGCAATGCTGAAGGCCTCTTACAGAGCTTCCTGCTTTCCTCTGGTCTGGCTGGCCAGCGCTaGGATAGTTACTTTGTAGAG +
Preference number: 4 (lower is better)
Translates to: HTVCNAEGLLQSFLLSSGLAGQR*DSYFVE
Trigger: CTCTACAAAGTAACTATCCCAGCGCTGGCCAGCCAG...ACCAGAGGAAAGCAGGAAGCTCTGTAAGAGGCCTTCAGCATTGCATACAGTGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
CDS-3UTR CCA 90 bp ATACTCCACACTGTATGCAATGCTGAAGGCCTCTTACAGAGCTTCCTGCTTTCCACTGCTTGCTTGAGCTaGGCTGTAGACACAGGAGCG +
Preference number: 4 (lower is better)
Translates to: ILHTVCNAEGLLQSFLLSTACLS*AVDTGA
Trigger: CGCTCCTGTGTCTACAGCCCAGCTCAAGCAAGCAGT...GGAAAGCAGGAAGCTCTGTAAGAGGCCTTCAGCATTGCATACAGTGTGGAGTAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
CDS-3UTR GCA 90 bp ACATTACATCCTTTTTACATGTATATAGCCTCCCTCCCCCAGTCACTATCAGATCCGCTTCCTTCTGGGTaGCGCTCAATCCATCCCCGG +
Preference number: 4 (lower is better)
Translates to: TLHPFYMYIASLPQSLSDPLPSG*RSIHPR
Trigger: CCGGGGATGGATTGAGCGGCACCCAGAAGGAAGCGG...ATCTGATAGTGACTGGGGGAGGGAGGCTATATACATGTAAAAAGGATGTAATGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000075838.8
CDS-3UTR GCA 90 bp ACCATGATGGGTGTAAGGCTTTCCTGGAATAGTTTCACTATCAAGGGACTCAGTCCAAGCTATATCCTGTaGGCTGGACCAGTGCGCGGA +
Preference number: 4 (lower is better)
Translates to: TMMGVRLSWNSFTIKGLSPSYIL*AGPVRG
Trigger: TCCGCGCACTGGTCCAGCGCACAGGATATAGCTTGG...ACTGAGTCCCTTGATAGTGAAACTATTCCAGGAAAGCCTTACACCCATCATGGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075838.8
CDS-3UTR GCA 90 bp CACTCAGGATCCTTGGAAGAACAACTTTTGCTGTCCGTGGATCTTCAGGTTTCTCCTAGCCATGGCGGCTaGTCGGTGACTCTCATATTC +
Preference number: 4 (lower is better)
Translates to: HSGSLEEQLLLSVDLQVSPSHGG*SVTLIF
Trigger: GAATATGAGAGTCACCGAGCAGCCGCCATGGCTAGG...AGAAACCTGAAGATCCACGGACAGCAAAAGTTGTTCTTCCAAGGATCCTGAGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
CDS-3UTR GCA 90 bp ATAGTTTCACTATCAAGGGACTCAGTCATAGTAAAGCCAGCTGCACATATTGAAGCAGCATGGTGTTCCTaGCACCGGTGCCCCGGGTGT +
Preference number: 4 (lower is better)
Translates to: IVSLSRDSVIVKPAAHIEAAWCS*HRCPGC
Trigger: ACACCCGGGGCACCGGTGGCAGGAACACCATGCTGC...TTCAATATGTGCAGCTGGCTTTACTATGACTGAGTCCCTTGATAGTGAAACTAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075838.8
CDS-3UTR GCA 90 bp CTCAGGAAAGGCATTGCTTTGGGGGAAGGTATGACTTGTGGTCATGAGGGATCTTATGAAAGGGTGGATTaGAGGATTCTGGCTGGCCAG +
Preference number: 4 (lower is better)
Translates to: LRKGIALGEGMTCGHEGSYERVD*RILAGQ
Trigger: CTGGCCAGCCAGAATCCTGCAATCCACCCTTTCATA...AGATCCCTCATGACCACAAGTCATACCTTCCCCCAAAGCAATGCCTTTCCTGAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
CDS-3UTR CCA 90 bp TATGCAATGCTGAAGGCCTCTTACAGAGCTTCCTGCTTTCCTCTGGTGTCTAAGTGTAGAATCCCAGCCTaGTGGAGGGCCACCATACTT +
Preference number: 4 (lower is better)
Translates to: YAMLKASYRASCFPLVSKCRIPA*WRATIL
Trigger: AAGTATGGTGGCCCTCCACCAGGCTGGGATTCTACA...CTTAGACACCAGAGGAAAGCAGGAAGCTCTGTAAGAGGCCTTCAGCATTGCATA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
CDS-3UTR CCA 90 bp TATGCAATGCTGAAGGCCTCTTACAGAGCTTCCTGCTTTCCTCTGGTGTCTAAGGGCAATTGTCCACACTaGCACAGACTCCCAAGAGAC +
Preference number: 4 (lower is better)
Translates to: YAMLKASYRASCFPLVSKGNCPH*HRLPRD
Trigger: GTCTCTTGGGAGTCTGTGCCAGTGTGGACAATTGCC...CTTAGACACCAGAGGAAAGCAGGAAGCTCTGTAAGAGGCCTTCAGCATTGCATA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
CDS-3UTR CCA 90 bp TATCCTCTTCCTGAGACACTCAGGATCCTTGGAAGAACAACTTTTGCTGTCCGTCAACTGAATTCTTCCTaGCAGCAGCCTCCGCCTAGC +
Preference number: 4 (lower is better)
Translates to: YPLPETLRILGRTTFAVRQLNSS*QQPPPS
Trigger: GCTAGGCGGAGGCTGCTGCCAGGAAGAATTCAGTTG...ACGGACAGCAAAAGTTGTTCTTCCAAGGATCCTGAGTGTCTCAGGAAGAGGATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
CDS-3UTR CCA 90 bp CTCTTCCTGAGACACTCAGGATCCTTGGAAGAACAACTTTTGCTGTCCGTGGATGGGGACAGCATATCCTaGGAACACAGTGGCAGAAGT +
Preference number: 4 (lower is better)
Translates to: LFLRHSGSLEEQLLLSVDGDSIS*EHSGRS
Trigger: ACTTCTGCCACTGTGTTCCCAGGATATGCTGTCCCC...ATCCACGGACAGCAAAAGTTGTTCTTCCAAGGATCCTGAGTGTCTCAGGAAGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
CDS-3UTR GCA 90 bp TCCACACTGTATGCAATGCTGAAGGCCTCTTACAGAGCTTCCTGCTTTCCTCTGAACCATCCAGCACCTTaGCATTCAAAGCCTTCATGG +
Preference number: 4 (lower is better)
Translates to: STLYAMLKASYRASCFPLNHPAP*HSKPSW
Trigger: CCATGAAGGCTTTGAATGGCAAGGTGCTGGATGGTT...CAGAGGAAAGCAGGAAGCTCTGTAAGAGGCCTTCAGCATTGCATACAGTGTGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
CDS-3UTR GCA 90 bp GAACTGGGTAGAGAACTCAAAGGTAACCTCAATTTTAATGCAACTTCTTGGAGAAGAAGTGGCCGTGGGTaGTGTAGTCCCAGCGTCCCC +
Preference number: 4 (lower is better)
Translates to: ELGRELKGNLNFNATSWRRSGRG*CSPSVP
Trigger: GGGGACGCTGGGACTACAGCACCCACGGCCACTTCT...TCTCCAAGAAGTTGCATTAAAATTGAGGTTACCTTTGAGTTCTCTACCCAGTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075838.8
CDS-3UTR GCA 90 bp CAGTGGCTTAAAGAGTTGAATAAATACAGGGCTTGGATTTGTCTCAAGCATATCAGAAGTGGCCGTGGGTaGTGTAGTCCCAGCGTCCCC +
Preference number: 4 (lower is better)
Translates to: QWLKELNKYRAWICLKHIRSGRG*CSPSVP
Trigger: GGGGACGCTGGGACTACAGCACCCACGGCCACTTCT...GATATGCTTGAGACAAATCCAAGCCCTGTATTTATTCAACTCTTTAAGCCACTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
CDS-3UTR GCA 90 bp TATGCAATGCTGAAGGCCTCTTACAGAGCTTCCTGCTTTCCTCTGGTGTCTAAGTTGTCCAAGTGTCACTaGTTGCTTGAGCTGGGCTGT +
Preference number: 4 (lower is better)
Translates to: YAMLKASYRASCFPLVSKLSKCH*LLELGC
Trigger: ACAGCCCAGCTCAAGCAAGCAGTGACACTTGGACAA...CTTAGACACCAGAGGAAAGCAGGAAGCTCTGTAAGAGGCCTTCAGCATTGCATA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
CDS-3UTR CCA 90 bp CACTCAGGATCCTTGGAAGAACAACTTTTGCTGTCCGTGGATCTTCAGGTTTCTTTGTCTCCTTTGACGTaGTATCCTCGACCCAGGCCT +
Preference number: 4 (lower is better)
Translates to: HSGSLEEQLLLSVDLQVSLSPLT*YPRPRP
Trigger: AGGCCTGGGTCGAGGATACCACGTCAAAGGAGACAA...AGAAACCTGAAGATCCACGGACAGCAAAAGTTGTTCTTCCAAGGATCCTGAGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
CDS-3UTR CCA 90 bp TCTGTGATTTGGGAATCCTTGAGCAGGGAAAGGATTCTGAAGGAAAACAGTGGCATGGCAGAATGCAGTTaGTACACTGGCTGTCCCCAG +
Preference number: 4 (lower is better)
Translates to: SVIWESLSRERILKENSGMAECS*YTGCPQ
Trigger: CTGGGGACAGCCAGTGTACCAACTGCATTCTGCCAT...GCCACTGTTTTCCTTCAGAATCCTTTCCCTGCTCAAGGATTCCCAAATCACAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
CDS-3UTR CCA 90 bp TCATCTTTCACTCTAGAACTTGGTACTGGCATGGTTTCTGTGATTTGGGAATCCATCCTGGGAACACAGTaGCAGAAGTGGCCGTGGGTG +
Preference number: 4 (lower is better)
Translates to: SSFTLELGTGMVSVIWESILGTQ*QKWPWV
Trigger: CACCCACGGCCACTTCTGCCACTGTGTTCCCAGGAT...GGATTCCCAAATCACAGAAACCATGCCAGTACCAAGTTCTAGAGTGAAAGATGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
CDS-3UTR GCA 90 bp AAGTCATCTTTCACTCTAGAACTTGGTACTGGCATGGTTTCTGTGATTTGGGAACCAAGCTATATCCTGTaGGCTGGACCAGTGCGCGGA +
Preference number: 4 (lower is better)
Translates to: KSSFTLELGTGMVSVIWEPSYIL*AGPVRG
Trigger: TCCGCGCACTGGTCCAGCGCACAGGATATAGCTTGG...TTCCCAAATCACAGAAACCATGCCAGTACCAAGTTCTAGAGTGAAAGATGACTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
CDS-3UTR GCA 90 bp TTCCACCCAATCTCTTTAAGGCTACTGGACTATATAGTTTGTAGTTCATCTAAAGCAGCATGGTGTTCCTaGCACCGGTGCCCCGGGTGT +
Preference number: 4 (lower is better)
Translates to: FHPISLRLLDYIVCSSSKAAWCS*HRCPGC
Trigger: ACACCCGGGGCACCGGTGGCAGGAACACCATGCTGC...TTTAGATGAACTACAAACTATATAGTCCAGTAGCCTTAAAGAGATTGGGTGGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224564.2
CDS-3UTR GCA 90 bp TCATCTTTCACTCTAGAACTTGGTACTGGCATGGTTTCTGTGATTTGGGAATCCGCCTCGGGTGGTCAGTaGAAAAGTAGGGTAGACCTC +
Preference number: 4 (lower is better)
Translates to: SSFTLELGTGMVSVIWESASGGQ*KSRVDL
Trigger: GAGGTCTACCCTACTTTTGCACTGACCACCCGAGGC...GGATTCCCAAATCACAGAAACCATGCCAGTACCAAGTTCTAGAGTGAAAGATGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
CDS-3UTR CCA 90 bp CAGTGGCTTAAAGAGTTGAATAAATACAGGGCTTGGATTTGTCTCAAGCATATCCTATATCCTGTGCGCTaGACCAGTGCGCGGAGTGCC +
Preference number: 4 (lower is better)
Translates to: QWLKELNKYRAWICLKHILYPVR*TSARSA
Trigger: GGCACTCCGCGCACTGGTCCAGCGCACAGGATATAG...GATATGCTTGAGACAAATCCAAGCCCTGTATTTATTCAACTCTTTAAGCCACTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
CDS-3UTR CCA 90 bp TCCTTTTTACATGTATATAGCCTCCCTCCCCCAGTCACTATCAGATGGTCTAAAAGAATCCCAGCCTGGTaGAGGGCCACCATACTTCCT +
Preference number: 4 (lower is better)
Translates to: SFLHVYSLPPPVTIRWSKRIPAW*RATILP
Trigger: AGGAAGTATGGTGGCCCTCCACCAGGCTGGGATTCT...TTTAGACCATCTGATAGTGACTGGGGGAGGGAGGCTATATACATGTAAAAAGGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000075838.8
CDS-3UTR CCA 90 bp TGGGTAGAGAACTCAAAGGTAACCTCAATTTTAATGCAACTTCTTGGAGATGAGCTCGCAGCCCCTTTCTaGGGGTGTAGAATCCCAGCC +
Preference number: 4 (lower is better)
Translates to: WVENSKVTSILMQLLGDELAAPF*GCRIPA
Trigger: GGCTGGGATTCTACACCCCCAGAAAGGGGCTGCGAG...CTCATCTCCAAGAAGTTGCATTAAAATTGAGGTTACCTTTGAGTTCTCTACCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000075838.8
CDS-3UTR CCA 90 bp TCATCTTTCACTCTAGAACTTGGTACTGGCATGGTTTCTGTGATTTGGGAATCCCAACTGAATTCTTCCTaGCAGCAGCCTCCGCCTAGC +
Preference number: 4 (lower is better)
Translates to: SSFTLELGTGMVSVIWESQLNSS*QQPPPS
Trigger: GCTAGGCGGAGGCTGCTGCCAGGAAGAATTCAGTTG...GGATTCCCAAATCACAGAAACCATGCCAGTACCAAGTTCTAGAGTGAAAGATGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
CDS-3UTR CCA 90 bp TATGCAATGCTGAAGGCCTCTTACAGAGCTTCCTGCTTTCCTCTGGTGTCTAAGCAAGGTCACTTCTATTaGGGAACCATCCAGCACCTT +
Preference number: 4 (lower is better)
Translates to: YAMLKASYRASCFPLVSKQGHFY*GTIQHL
Trigger: AAGGTGCTGGATGGTTCCCCAATAGAAGTGACCTTG...CTTAGACACCAGAGGAAAGCAGGAAGCTCTGTAAGAGGCCTTCAGCATTGCATA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
CDS-3UTR CCA 90 bp GATTTGGGAATCCTTGAGCAGGGAAAGGATTCTGAAGGAAAACAGTGGCTTAAATGGATTGCAGGATTCTaGCTGGCCAGCGCTGGGATA +
Preference number: 4 (lower is better)
Translates to: DLGILEQGKDSEGKQWLKWIAGF*LASAGI
Trigger: TATCCCAGCGCTGGCCAGCCAGAATCCTGCAATCCA...TTTAAGCCACTGTTTTCCTTCAGAATCCTTTCCCTGCTCAAGGATTCCCAAATC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
CDS-3UTR GCA 90 bp GATTTGTCTCAAGCATATCTGAAATACATTGTACTGATTTCTAGAAAGTCCCCACCGCTTCCTTCTGGGTaGCGCTCAATCCATCCCCGG +
Preference number: 4 (lower is better)
Translates to: DLSQAYLKYIVLISRKSPPLPSG*RSIHPR
Trigger: CCGGGGATGGATTGAGCGGCACCCAGAAGGAAGCGG...TGGGGACTTTCTAGAAATCAGTACAATGTATTTCAGATATGCTTGAGACAAATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
CDS-3UTR GCA 90 bp TTCCACCCAATCTCTTTAAGGCTACTGGACTATATAGTTTGTAGTTCATCTAAACCGCTTCCTTCTGGGTaGCGCTCAATCCATCCCCGG +
Preference number: 4 (lower is better)
Translates to: FHPISLRLLDYIVCSSSKPLPSG*RSIHPR
Trigger: CCGGGGATGGATTGAGCGGCACCCAGAAGGAAGCGG...TTTAGATGAACTACAAACTATATAGTCCAGTAGCCTTAAAGAGATTGGGTGGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224564.2
CDS-3UTR GCA 90 bp TATCCTCTTCCTGAGACACTCAGGATCCTTGGAAGAACAACTTTTGCTGTCCGTAACCATCCAGCACCTTaGCATTCAAAGCCTTCATGG +
Preference number: 4 (lower is better)
Translates to: YPLPETLRILGRTTFAVRNHPAP*HSKPSW
Trigger: CCATGAAGGCTTTGAATGGCAAGGTGCTGGATGGTT...ACGGACAGCAAAAGTTGTTCTTCCAAGGATCCTGAGTGTCTCAGGAAGAGGATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
CDS-3UTR GCA 90 bp GTTTCACTATCAAGGGACTCAGTCATAGTAAAGCCAGCTGCACATATTGAAAGAGCCTCGGGTGGTCAGTaGAAAAGTAGGGTAGACCTC +
Preference number: 4 (lower is better)
Translates to: VSLSRDSVIVKPAAHIERASGGQ*KSRVDL
Trigger: GAGGTCTACCCTACTTTTGCACTGACCACCCGAGGC...TCTTTCAATATGTGCAGCTGGCTTTACTATGACTGAGTCCCTTGATAGTGAAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075838.8
CDS-3UTR CCA 90 bp TTGTCTCAAGCATATCTGAAATACATTGTACTGATTTCTAGAAAGTCCCCAGAGCTCGCAGCCCCTTTCTaGGGGTGTAGAATCCCAGCC +
Preference number: 4 (lower is better)
Translates to: LSQAYLKYIVLISRKSPELAAPF*GCRIPA
Trigger: GGCTGGGATTCTACACCCCCAGAAAGGGGCTGCGAG...CTCTGGGGACTTTCTAGAAATCAGTACAATGTATTTCAGATATGCTTGAGACAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
CDS-3UTR CCA 90 bp TATGCAATGCTGAAGGCCTCTTACAGAGCTTCCTGCTTTCCTCTGGTGTCTAAGCCCTCTTTTTGGTTTTaGGGATTCCTCCCACAAACA +
Preference number: 4 (lower is better)
Translates to: YAMLKASYRASCFPLVSKPSFWF*GFLPQT
Trigger: TGTTTGTGGGAGGAATCCCCAAAACCAAAAAGAGGG...CTTAGACACCAGAGGAAAGCAGGAAGCTCTGTAAGAGGCCTTCAGCATTGCATA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
CDS-3UTR CCA 90 bp ACATTACATCCTTTTTACATGTATATAGCCTCCCTCCCCCAGTCACTATCAGATATTCTCCTTGCAGCATaGTGTTCCTGCCACCGGTGC +
Preference number: 4 (lower is better)
Translates to: TLHPFYMYIASLPQSLSDILLAA*CSCHRC
Trigger: GCACCGGTGGCAGGAACACCATGCTGCAAGGAGAAT...ATCTGATAGTGACTGGGGGAGGGAGGCTATATACATGTAAAAAGGATGTAATGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000075838.8
CDS-3UTR CCA 90 bp TATGCAATGCTGAAGGCCTCTTACAGAGCTTCCTGCTTTCCTCTGGTGTCTAAGTGGGAAATGAAGACTTaGAATGGCTGCATAGGCTTG +
Preference number: 4 (lower is better)
Translates to: YAMLKASYRASCFPLVSKWEMKT*NGCIGL
Trigger: CAAGCCTATGCAGCCATTCCAAGTCTTCATTTCCCA...CTTAGACACCAGAGGAAAGCAGGAAGCTCTGTAAGAGGCCTTCAGCATTGCATA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
CDS-3UTR CCA 90 bp TCATCTTTCACTCTAGAACTTGGTACTGGCATGGTTTCTGTGATTTGGGAATCCATGGCAGAATGCAGTTaGTACACTGGCTGTCCCCAG +
Preference number: 4 (lower is better)
Translates to: SSFTLELGTGMVSVIWESMAECS*YTGCPQ
Trigger: CTGGGGACAGCCAGTGTACCAACTGCATTCTGCCAT...GGATTCCCAAATCACAGAAACCATGCCAGTACCAAGTTCTAGAGTGAAAGATGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
CDS-3UTR CCA 90 bp TTGTCTCAAGCATATCTGAAATACATTGTACTGATTTCTAGAAAGTCCCCAGAGCAGGAGCGGTGGCACTaGGGACAGCATATCCTGGGA +
Preference number: 4 (lower is better)
Translates to: LSQAYLKYIVLISRKSPEQERWH*GQHILG
Trigger: TCCCAGGATATGCTGTCCCCAGTGCCACCGCTCCTG...CTCTGGGGACTTTCTAGAAATCAGTACAATGTATTTCAGATATGCTTGAGACAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
3UTR CAA 72 bp ACTGCCCAGCTCTCTGTACTAAGAGCATATGCTAATTaGTCAGGGTGTTATCCTCTTCCTGAGACACTCAGG +
Preference number: 4 (lower is better)
Translates to: TAQLSVLRAYAN*SGCYPLPETLR
Trigger: CCTGAGTGTCTCAGGAAGAGGATAACACCCTGACAAATTAGCATATGCTCTTAGTACAGAGAGCTGGGCAGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
3UTR CAA 72 bp CTTGGTACTGGCATGGTTTCTGTGATTTGGGAATCCTaGAGCAGGGAAAGGATTCTGAAGGAAAACAGTGGC +
Preference number: 4 (lower is better)
Translates to: LGTGMVSVIWES*SRERILKENSG
Trigger: GCCACTGTTTTCCTTCAGAATCCTTTCCCTGCTCAAGGATTCCCAAATCACAGAAACCATGCCAGTACCAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
CDS-3UTR TCA 90 bp CTCAGGAAAGGCATTGCTTTGGGGGAAGGTATGACTTGTGGTCATGAGGGATCTTTTCACACAATGGTATaGGTTCATCCTCAAAGAGGT +
Preference number: 4 (lower is better)
Translates to: LRKGIALGEGMTCGHEGSFHTMV*VHPQRG
Trigger: ACCTCTTTGAGGATGAACTCATACCATTGTGTGAAA...AGATCCCTCATGACCACAAGTCATACCTTCCCCCAAAGCAATGCCTTTCCTGAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
CDS-3UTR GCA 90 bp TCATCTTTCACTCTAGAACTTGGTACTGGCATGGTTTCTGTGATTTGGGAATCCTTGTCCAAGTGTCACTaGTTGCTTGAGCTGGGCTGT +
Preference number: 4 (lower is better)
Translates to: SSFTLELGTGMVSVIWESLSKCH*LLELGC
Trigger: ACAGCCCAGCTCAAGCAAGCAGTGACACTTGGACAA...GGATTCCCAAATCACAGAAACCATGCCAGTACCAAGTTCTAGAGTGAAAGATGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
CDS-3UTR CCA 90 bp TTCCACCCAATCTCTTTAAGGCTACTGGACTATATAGTTTGTAGTTCATCTAAACTATATCCTGTGCGCTaGACCAGTGCGCGGAGTGCC +
Preference number: 4 (lower is better)
Translates to: FHPISLRLLDYIVCSSSKLYPVR*TSARSA
Trigger: GGCACTCCGCGCACTGGTCCAGCGCACAGGATATAG...TTTAGATGAACTACAAACTATATAGTCCAGTAGCCTTAAAGAGATTGGGTGGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000224564.2
CDS-3UTR CCA 90 bp AAGTCATCTTTCACTCTAGAACTTGGTACTGGCATGGTTTCTGTGATTTGGGAATGTAGAATCCCAGCCTaGTGGAGGGCCACCATACTT +
Preference number: 4 (lower is better)
Translates to: KSSFTLELGTGMVSVIWECRIPA*WRATIL
Trigger: AAGTATGGTGGCCCTCCACCAGGCTGGGATTCTACA...TTCCCAAATCACAGAAACCATGCCAGTACCAAGTTCTAGAGTGAAAGATGACTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
CDS-3UTR CCA 90 bp TTCCACCCAATCTCTTTAAGGCTACTGGACTATATAGTTTGTAGTTCATCTAAACTCGCAGCCCCTTTCTaGGGGTGTAGAATCCCAGCC +
Preference number: 4 (lower is better)
Translates to: FHPISLRLLDYIVCSSSKLAAPF*GCRIPA
Trigger: GGCTGGGATTCTACACCCCCAGAAAGGGGCTGCGAG...TTTAGATGAACTACAAACTATATAGTCCAGTAGCCTTAAAGAGATTGGGTGGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000224564.2
CDS-3UTR CCA 90 bp TCCACACTGTATGCAATGCTGAAGGCCTCTTACAGAGCTTCCTGCTTTCCTCTGTTTATCAGCAGCACTTaGGTAGACAATGACATCAAC +
Preference number: 4 (lower is better)
Translates to: STLYAMLKASYRASCFPLFISST*VDNDIN
Trigger: GTTGATGTCATTGTCTACCCAAGTGCTGCTGATAAA...CAGAGGAAAGCAGGAAGCTCTGTAAGAGGCCTTCAGCATTGCATACAGTGTGGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
CDS-3UTR CCA 90 bp GAACTGGGTAGAGAACTCAAAGGTAACCTCAATTTTAATGCAACTTCTTGGAGAACTGCTTGCTTGAGCTaGGCTGTAGACACAGGAGCG +
Preference number: 4 (lower is better)
Translates to: ELGRELKGNLNFNATSWRTACLS*AVDTGA
Trigger: CGCTCCTGTGTCTACAGCCCAGCTCAAGCAAGCAGT...TCTCCAAGAAGTTGCATTAAAATTGAGGTTACCTTTGAGTTCTCTACCCAGTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075838.8
3UTR CAA 72 bp ACGAATAAATCTTGTGGTCTCAGGAAAGGCATTGCTTaGGGGGAAGGTATGACTTGTGGTCATGAGGGATCT +
Preference number: 4 (lower is better)
Translates to: TNKSCGLRKGIA*GEGMTCGHEGS
Trigger: AGATCCCTCATGACCACAAGTCATACCTTCCCCCAAAGCAATGCCTTTCCTGAGACCACAAGATTTATTCGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
3UTR CAA 72 bp CACTCTAGAACTTGGTACTGGCATGGTTTCTGTGATTaGGGAATCCTTGAGCAGGGAAAGGATTCTGAAGGA +
Preference number: 4 (lower is better)
Translates to: HSRTWYWHGFCD*GILEQGKDSEG
Trigger: TCCTTCAGAATCCTTTCCCTGCTCAAGGATTCCCAAATCACAGAAACCATGCCAGTACCAAGTTCTAGAGTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
CDS-3UTR GCA 90 bp TTCCACCCAATCTCTTTAAGGCTACTGGACTATATAGTTTGTAGTTCATCTAAACCAAGCTATATCCTGTaGGCTGGACCAGTGCGCGGA +
Preference number: 4 (lower is better)
Translates to: FHPISLRLLDYIVCSSSKPSYIL*AGPVRG
Trigger: TCCGCGCACTGGTCCAGCGCACAGGATATAGCTTGG...TTTAGATGAACTACAAACTATATAGTCCAGTAGCCTTAAAGAGATTGGGTGGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000224564.2
CDS-3UTR GCA 90 bp AGTAATACGACGAATAAATCTTGTGGTCTCAGGAAAGGCATTGCTTTGGGGGAATTCTGCCCAGTCTACTaGAATAGGATGTCCCCACAA +
Preference number: 4 (lower is better)
Translates to: SNTTNKSCGLRKGIALGEFCPVY*NRMSPQ
Trigger: TTGTGGGGACATCCTATTGCAGTAGACTGGGCAGAA...TTCCCCCAAAGCAATGCCTTTCCTGAGACCACAAGATTTATTCGTCGTATTACT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
CDS-3UTR GCA 90 bp GATTTGGGAATCCTTGAGCAGGGAAAGGATTCTGAAGGAAAACAGTGGCTTAAATTCTGCCCAGTCTACTaGAATAGGATGTCCCCACAA +
Preference number: 4 (lower is better)
Translates to: DLGILEQGKDSEGKQWLKFCPVY*NRMSPQ
Trigger: TTGTGGGGACATCCTATTGCAGTAGACTGGGCAGAA...TTTAAGCCACTGTTTTCCTTCAGAATCCTTTCCCTGCTCAAGGATTCCCAAATC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
CDS-3UTR CCA 90 bp TCTGTGATTTGGGAATCCTTGAGCAGGGAAAGGATTCTGAAGGAAAACAGTGGCCTTTGTCCATTTTCCTaGACCAAGCTATATCCTGTG +
Preference number: 4 (lower is better)
Translates to: SVIWESLSRERILKENSGLCPFS*TKLYPV
Trigger: CACAGGATATAGCTTGGTCCAGGAAAATGGACAAAG...GCCACTGTTTTCCTTCAGAATCCTTTCCCTGCTCAAGGATTCCCAAATCACAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
CDS-3UTR CCA 90 bp CTCTTCCTGAGACACTCAGGATCCTTGGAAGAACAACTTTTGCTGTCCGTGGATTTTATCAGCAGCACTTaGGTAGACAATGACATCAAC +
Preference number: 4 (lower is better)
Translates to: LFLRHSGSLEEQLLLSVDFISST*VDNDIN
Trigger: GTTGATGTCATTGTCTACCCAAGTGCTGCTGATAAA...ATCCACGGACAGCAAAAGTTGTTCTTCCAAGGATCCTGAGTGTCTCAGGAAGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
CDS-3UTR CCA 90 bp TCCACACTGTATGCAATGCTGAAGGCCTCTTACAGAGCTTCCTGCTTTCCTCTGTCTTTCCACAGCACCTaGTTTAATACTGTTGAATTC +
Preference number: 4 (lower is better)
Translates to: STLYAMLKASYRASCFPLSFHST*FNTVEF
Trigger: GAATTCAACAGTATTAAACCAGGTGCTGTGGAAAGA...CAGAGGAAAGCAGGAAGCTCTGTAAGAGGCCTTCAGCATTGCATACAGTGTGGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
CDS-3UTR CCA 90 bp GATTTGGGAATCCTTGAGCAGGGAAAGGATTCTGAAGGAAAACAGTGGCTTAAACAAGGTCACTTCTATTaGGGAACCATCCAGCACCTT +
Preference number: 4 (lower is better)
Translates to: DLGILEQGKDSEGKQWLKQGHFY*GTIQHL
Trigger: AAGGTGCTGGATGGTTCCCCAATAGAAGTGACCTTG...TTTAAGCCACTGTTTTCCTTCAGAATCCTTTCCCTGCTCAAGGATTCCCAAATC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
CDS-3UTR CCA 90 bp CAGTGGCTTAAAGAGTTGAATAAATACAGGGCTTGGATTTGTCTCAAGCATATCACTGTCCTTGTCCACTaGCTTGGCCAAGGTCACTTC +
Preference number: 4 (lower is better)
Translates to: QWLKELNKYRAWICLKHITVLVH*LGQGHF
Trigger: GAAGTGACCTTGGCCAAGCCAGTGGACAAGGACAGT...GATATGCTTGAGACAAATCCAAGCCCTGTATTTATTCAACTCTTTAAGCCACTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
CDS-3UTR CCA 90 bp GAACTGGGTAGAGAACTCAAAGGTAACCTCAATTTTAATGCAACTTCTTGGAGACTGGCTGGCCAGCGCTaGGATAGTTACTTTGTAGAG +
Preference number: 4 (lower is better)
Translates to: ELGRELKGNLNFNATSWRLAGQR*DSYFVE
Trigger: CTCTACAAAGTAACTATCCCAGCGCTGGCCAGCCAG...TCTCCAAGAAGTTGCATTAAAATTGAGGTTACCTTTGAGTTCTCTACCCAGTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075838.8
CDS-3UTR GCA 90 bp CTCTTCCTGAGACACTCAGGATCCTTGGAAGAACAACTTTTGCTGTCCGTGGATATTAAGTTGCTTGATTaGATTCTTGGCTTCCTGCTT +
Preference number: 4 (lower is better)
Translates to: LFLRHSGSLEEQLLLSVDIKLLD*ILGFLL
Trigger: AAGCAGGAAGCCAAGAATGCAATCAAGCAACTTAAT...ATCCACGGACAGCAAAAGTTGTTCTTCCAAGGATCCTGAGTGTCTCAGGAAGAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
CDS-3UTR GCA 90 bp TTCCACCCAATCTCTTTAAGGCTACTGGACTATATAGTTTGTAGTTCATCTAAACCTAGCCATGGCGGCTaGTCGGTGACTCTCATATTC +
Preference number: 4 (lower is better)
Translates to: FHPISLRLLDYIVCSSSKPSHGG*SVTLIF
Trigger: GAATATGAGAGTCACCGAGCAGCCGCCATGGCTAGG...TTTAGATGAACTACAAACTATATAGTCCAGTAGCCTTAAAGAGATTGGGTGGAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000224564.2
CDS-3UTR GCA 90 bp ACATTACATCCTTTTTACATGTATATAGCCTCCCTCCCCCAGTCACTATCAGATTGTCCAATGGCAGAATaGAGTTGGTACACTGGCTGT +
Preference number: 4 (lower is better)
Translates to: TLHPFYMYIASLPQSLSDCPMAE*SWYTGC
Trigger: ACAGCCAGTGTACCAACTGCATTCTGCCATTGGACA...ATCTGATAGTGACTGGGGGAGGGAGGCTATATACATGTAAAAAGGATGTAATGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000075838.8
CDS-3UTR GCA 90 bp CAGTGGCTTAAAGAGTTGAATAAATACAGGGCTTGGATTTGTCTCAAGCATATCTATGAAAGGGTGGATTaGAGGATTCTGGCTGGCCAG +
Preference number: 4 (lower is better)
Translates to: QWLKELNKYRAWICLKHIYERVD*RILAGQ
Trigger: CTGGCCAGCCAGAATCCTGCAATCCACCCTTTCATA...GATATGCTTGAGACAAATCCAAGCCCTGTATTTATTCAACTCTTTAAGCCACTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
CDS-3UTR CCA 90 bp TTCCACCCAATCTCTTTAAGGCTACTGGACTATATAGTTTGTAGTTCATCTAAAAGAATCCCAGCCTGGTaGAGGGCCACCATACTTCCT +
Preference number: 4 (lower is better)
Translates to: FHPISLRLLDYIVCSSSKRIPAW*RATILP
Trigger: AGGAAGTATGGTGGCCCTCCACCAGGCTGGGATTCT...TTTAGATGAACTACAAACTATATAGTCCAGTAGCCTTAAAGAGATTGGGTGGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224564.2
CDS-3UTR CCA 90 bp TCTGAAGGAAAACAGTGGCTTAAAGAGTTGAATAAATACAGGGCTTGGATTTGTGGCAATTGTCCACACTaGCACAGACTCCCAAGAGAC +
Preference number: 4 (lower is better)
Translates to: SEGKQWLKELNKYRAWICGNCPH*HRLPRD
Trigger: GTCTCTTGGGAGTCTGTGCCAGTGTGGACAATTGCC...ACAAATCCAAGCCCTGTATTTATTCAACTCTTTAAGCCACTGTTTTCCTTCAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
CDS-3UTR CCA 90 bp TTCCACCCAATCTCTTTAAGGCTACTGGACTATATAGTTTGTAGTTCATCTAAACAACTGAATTCTTCCTaGCAGCAGCCTCCGCCTAGC +
Preference number: 4 (lower is better)
Translates to: FHPISLRLLDYIVCSSSKQLNSS*QQPPPS
Trigger: GCTAGGCGGAGGCTGCTGCCAGGAAGAATTCAGTTG...TTTAGATGAACTACAAACTATATAGTCCAGTAGCCTTAAAGAGATTGGGTGGAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000224564.2
CDS-3UTR CCA 90 bp CAGTGGCTTAAAGAGTTGAATAAATACAGGGCTTGGATTTGTCTCAAGCATATCCCTTGTCCACTGGCTTaGCCAAGGTCACTTCTATTG +
Preference number: 4 (lower is better)
Translates to: QWLKELNKYRAWICLKHIPCPLA*PRSLLL
Trigger: CAATAGAAGTGACCTTGGCCAAGCCAGTGGACAAGG...GATATGCTTGAGACAAATCCAAGCCCTGTATTTATTCAACTCTTTAAGCCACTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
CDS-3UTR CCA 90 bp TTCCACCCAATCTCTTTAAGGCTACTGGACTATATAGTTTGTAGTTCATCTAAAATTCTCCTTGCAGCATaGTGTTCCTGCCACCGGTGC +
Preference number: 4 (lower is better)
Translates to: FHPISLRLLDYIVCSSSKILLAA*CSCHRC
Trigger: GCACCGGTGGCAGGAACACCATGCTGCAAGGAGAAT...TTTAGATGAACTACAAACTATATAGTCCAGTAGCCTTAAAGAGATTGGGTGGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224564.2
CDS-3UTR CCA 90 bp AGTAATACGACGAATAAATCTTGTGGTCTCAGGAAAGGCATTGCTTTGGGGGAATGGGAAATGAAGACTTaGAATGGCTGCATAGGCTTG +
Preference number: 4 (lower is better)
Translates to: SNTTNKSCGLRKGIALGEWEMKT*NGCIGL
Trigger: CAAGCCTATGCAGCCATTCCAAGTCTTCATTTCCCA...TTCCCCCAAAGCAATGCCTTTCCTGAGACCACAAGATTTATTCGTCGTATTACT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
CDS-3UTR CCA 90 bp CTCTTCCTGAGACACTCAGGATCCTTGGAAGAACAACTTTTGCTGTCCGTGGATATGTCCTTTAGTAGCTaGGAAATGAAGACTTGGAAT +
Preference number: 4 (lower is better)
Translates to: LFLRHSGSLEEQLLLSVDMSFSS*EMKTWN
Trigger: ATTCCAAGTCTTCATTTCCCAGCTACTAAAGGACAT...ATCCACGGACAGCAAAAGTTGTTCTTCCAAGGATCCTGAGTGTCTCAGGAAGAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
CDS-3UTR CCA 90 bp TTGTCTCAAGCATATCTGAAATACATTGTACTGATTTCTAGAAAGTCCCCAGAGGGGGACAGCATATCCTaGGAACACAGTGGCAGAAGT +
Preference number: 4 (lower is better)
Translates to: LSQAYLKYIVLISRKSPEGDSIS*EHSGRS
Trigger: ACTTCTGCCACTGTGTTCCCAGGATATGCTGTCCCC...CTCTGGGGACTTTCTAGAAATCAGTACAATGTATTTCAGATATGCTTGAGACAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
CDS-3UTR TCA 90 bp ACCATGATGGGTGTAAGGCTTTCCTGGAATAGTTTCACTATCAAGGGACTCAGTTTTCACACAATGGTATaGGTTCATCCTCAAAGAGGT +
Preference number: 4 (lower is better)
Translates to: TMMGVRLSWNSFTIKGLSFHTMV*VHPQRG
Trigger: ACCTCTTTGAGGATGAACTCATACCATTGTGTGAAA...ACTGAGTCCCTTGATAGTGAAACTATTCCAGGAAAGCCTTACACCCATCATGGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075838.8
CDS-3UTR GCA 90 bp TATCCTCTTCCTGAGACACTCAGGATCCTTGGAAGAACAACTTTTGCTGTCCGTATTAAGTTGCTTGATTaGATTCTTGGCTTCCTGCTT +
Preference number: 4 (lower is better)
Translates to: YPLPETLRILGRTTFAVRIKLLD*ILGFLL
Trigger: AAGCAGGAAGCCAAGAATGCAATCAAGCAACTTAAT...ACGGACAGCAAAAGTTGTTCTTCCAAGGATCCTGAGTGTCTCAGGAAGAGGATA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
CDS-3UTR CCA 90 bp AGTAATACGACGAATAAATCTTGTGGTCTCAGGAAAGGCATTGCTTTGGGGGAACTTTGTCCATTTTCCTaGACCAAGCTATATCCTGTG +
Preference number: 4 (lower is better)
Translates to: SNTTNKSCGLRKGIALGELCPFS*TKLYPV
Trigger: CACAGGATATAGCTTGGTCCAGGAAAATGGACAAAG...TTCCCCCAAAGCAATGCCTTTCCTGAGACCACAAGATTTATTCGTCGTATTACT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
CDS-3UTR CCA 90 bp TTCCACCCAATCTCTTTAAGGCTACTGGACTATATAGTTTGTAGTTCATCTAAATGTAGAATCCCAGCCTaGTGGAGGGCCACCATACTT +
Preference number: 4 (lower is better)
Translates to: FHPISLRLLDYIVCSSSKCRIPA*WRATIL
Trigger: AAGTATGGTGGCCCTCCACCAGGCTGGGATTCTACA...TTTAGATGAACTACAAACTATATAGTCCAGTAGCCTTAAAGAGATTGGGTGGAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000224564.2
CDS-3UTR CCA 90 bp TTCCACCCAATCTCTTTAAGGCTACTGGACTATATAGTTTGTAGTTCATCTAAAGGCAATTGTCCACACTaGCACAGACTCCCAAGAGAC +
Preference number: 4 (lower is better)
Translates to: FHPISLRLLDYIVCSSSKGNCPH*HRLPRD
Trigger: GTCTCTTGGGAGTCTGTGCCAGTGTGGACAATTGCC...TTTAGATGAACTACAAACTATATAGTCCAGTAGCCTTAAAGAGATTGGGTGGAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000224564.2
CDS-3UTR CCA 90 bp GTTTCACTATCAAGGGACTCAGTCATAGTAAAGCCAGCTGCACATATTGAAAGACCCTCTTTTTGGTTTTaGGGATTCCTCCCACAAACA +
Preference number: 4 (lower is better)
Translates to: VSLSRDSVIVKPAAHIERPSFWF*GFLPQT
Trigger: TGTTTGTGGGAGGAATCCCCAAAACCAAAAAGAGGG...TCTTTCAATATGTGCAGCTGGCTTTACTATGACTGAGTCCCTTGATAGTGAAAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000075838.8
CDS-3UTR CCA 90 bp TTCCACCCAATCTCTTTAAGGCTACTGGACTATATAGTTTGTAGTTCATCTAAAACTGTCCTTGTCCACTaGCTTGGCCAAGGTCACTTC +
Preference number: 4 (lower is better)
Translates to: FHPISLRLLDYIVCSSSKTVLVH*LGQGHF
Trigger: GAAGTGACCTTGGCCAAGCCAGTGGACAAGGACAGT...TTTAGATGAACTACAAACTATATAGTCCAGTAGCCTTAAAGAGATTGGGTGGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224564.2
CDS-3UTR CCA 90 bp GATTTGTCTCAAGCATATCTGAAATACATTGTACTGATTTCTAGAAAGTCCCCATTGTCTCCTTTGACGTaGTATCCTCGACCCAGGCCT +
Preference number: 4 (lower is better)
Translates to: DLSQAYLKYIVLISRKSPLSPLT*YPRPRP
Trigger: AGGCCTGGGTCGAGGATACCACGTCAAAGGAGACAA...TGGGGACTTTCTAGAAATCAGTACAATGTATTTCAGATATGCTTGAGACAAATC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
CDS-3UTR CCA 90 bp GATTTGGGAATCCTTGAGCAGGGAAAGGATTCTGAAGGAAAACAGTGGCTTAAAATGCAGTTGGTACACTaGCTGTCCCCAGTTATTTTT +
Preference number: 4 (lower is better)
Translates to: DLGILEQGKDSEGKQWLKMQLVH*LSPVIF
Trigger: AAAAATAACTGGGGACAGCCAGTGTACCAACTGCAT...TTTAAGCCACTGTTTTCCTTCAGAATCCTTTCCCTGCTCAAGGATTCCCAAATC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
CDS-3UTR CCA 90 bp ATACGACGAATAAATCTTGTGGTCTCAGGAAAGGCATTGCTTTGGGGGAAGGTATCTTTCCACAGCACCTaGTTTAATACTGTTGAATTC +
Preference number: 4 (lower is better)
Translates to: IRRINLVVSGKALLWGKVSFHST*FNTVEF
Trigger: GAATTCAACAGTATTAAACCAGGTGCTGTGGAAAGA...TACCTTCCCCCAAAGCAATGCCTTTCCTGAGACCACAAGATTTATTCGTCGTAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
CDS-3UTR CCA 90 bp ACATTACATCCTTTTTACATGTATATAGCCTCCCTCCCCCAGTCACTATCAGATCATTCAAAGCCTTCATaGCTTCAACTGCATCTTCTC +
Preference number: 4 (lower is better)
Translates to: TLHPFYMYIASLPQSLSDHSKPS*LQLHLL
Trigger: GAGAAGATGCAGTTGAAGCCATGAAGGCTTTGAATG...ATCTGATAGTGACTGGGGGAGGGAGGCTATATACATGTAAAAAGGATGTAATGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000075838.8
CDS-3UTR CCA 90 bp AAGTCATCTTTCACTCTAGAACTTGGTACTGGCATGGTTTCTGTGATTTGGGAACATTCAAAGCCTTCATaGCTTCAACTGCATCTTCTC +
Preference number: 4 (lower is better)
Translates to: KSSFTLELGTGMVSVIWEHSKPS*LQLHLL
Trigger: GAGAAGATGCAGTTGAAGCCATGAAGGCTTTGAATG...TTCCCAAATCACAGAAACCATGCCAGTACCAAGTTCTAGAGTGAAAGATGACTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
CDS-3UTR CCA 90 bp GATTTGTCTCAAGCATATCTGAAATACATTGTACTGATTTCTAGAAAGTCCCCACCTTGTCCACTGGCTTaGCCAAGGTCACTTCTATTG +
Preference number: 4 (lower is better)
Translates to: DLSQAYLKYIVLISRKSPPCPLA*PRSLLL
Trigger: CAATAGAAGTGACCTTGGCCAAGCCAGTGGACAAGG...TGGGGACTTTCTAGAAATCAGTACAATGTATTTCAGATATGCTTGAGACAAATC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
CDS-3UTR CCA 90 bp TTCCACCCAATCTCTTTAAGGCTACTGGACTATATAGTTTGTAGTTCATCTAAACCTTGTCCACTGGCTTaGCCAAGGTCACTTCTATTG +
Preference number: 4 (lower is better)
Translates to: FHPISLRLLDYIVCSSSKPCPLA*PRSLLL
Trigger: CAATAGAAGTGACCTTGGCCAAGCCAGTGGACAAGG...TTTAGATGAACTACAAACTATATAGTCCAGTAGCCTTAAAGAGATTGGGTGGAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000224564.2
CDS-3UTR GCA 90 bp TTCCACCCAATCTCTTTAAGGCTACTGGACTATATAGTTTGTAGTTCATCTAAATTCTGCCCAGTCTACTaGAATAGGATGTCCCCACAA +
Preference number: 4 (lower is better)
Translates to: FHPISLRLLDYIVCSSSKFCPVY*NRMSPQ
Trigger: TTGTGGGGACATCCTATTGCAGTAGACTGGGCAGAA...TTTAGATGAACTACAAACTATATAGTCCAGTAGCCTTAAAGAGATTGGGTGGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224564.2
CDS-3UTR GCA 90 bp TTCCACCCAATCTCTTTAAGGCTACTGGACTATATAGTTTGTAGTTCATCTAAAAACCATCCAGCACCTTaGCATTCAAAGCCTTCATGG +
Preference number: 4 (lower is better)
Translates to: FHPISLRLLDYIVCSSSKNHPAP*HSKPSW
Trigger: CCATGAAGGCTTTGAATGGCAAGGTGCTGGATGGTT...TTTAGATGAACTACAAACTATATAGTCCAGTAGCCTTAAAGAGATTGGGTGGAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000224564.2
CDS-3UTR GCA 90 bp GATTTGTCTCAAGCATATCTGAAATACATTGTACTGATTTCTAGAAAGTCCCCATGTCCAATGGCAGAATaGAGTTGGTACACTGGCTGT +
Preference number: 4 (lower is better)
Translates to: DLSQAYLKYIVLISRKSPCPMAE*SWYTGC
Trigger: ACAGCCAGTGTACCAACTGCATTCTGCCATTGGACA...TGGGGACTTTCTAGAAATCAGTACAATGTATTTCAGATATGCTTGAGACAAATC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
CDS-3UTR CCA 90 bp TTCCACCCAATCTCTTTAAGGCTACTGGACTATATAGTTTGTAGTTCATCTAAACAAGGTCACTTCTATTaGGGAACCATCCAGCACCTT +
Preference number: 4 (lower is better)
Translates to: FHPISLRLLDYIVCSSSKQGHFY*GTIQHL
Trigger: AAGGTGCTGGATGGTTCCCCAATAGAAGTGACCTTG...TTTAGATGAACTACAAACTATATAGTCCAGTAGCCTTAAAGAGATTGGGTGGAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000224564.2
CDS-3UTR TCA 90 bp AAGTCATCTTTCACTCTAGAACTTGGTACTGGCATGGTTTCTGTGATTTGGGAAGGCTTCCTGCTTATTTaGGAATGTTACAAATGCATA +
Preference number: 4 (lower is better)
Translates to: KSSFTLELGTGMVSVIWEGFLLI*ECYKCI
Trigger: TATGCATTTGTAACATTCTCAAATAAGCAGGAAGCC...TTCCCAAATCACAGAAACCATGCCAGTACCAAGTTCTAGAGTGAAAGATGACTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
CDS-3UTR CCA 90 bp TTCCACCCAATCTCTTTAAGGCTACTGGACTATATAGTTTGTAGTTCATCTAAACCCTCTTTTTGGTTTTaGGGATTCCTCCCACAAACA +
Preference number: 4 (lower is better)
Translates to: FHPISLRLLDYIVCSSSKPSFWF*GFLPQT
Trigger: TGTTTGTGGGAGGAATCCCCAAAACCAAAAAGAGGG...TTTAGATGAACTACAAACTATATAGTCCAGTAGCCTTAAAGAGATTGGGTGGAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000224564.2
CDS-3UTR CCA 90 bp TTCCACCCAATCTCTTTAAGGCTACTGGACTATATAGTTTGTAGTTCATCTAAATGGGAAATGAAGACTTaGAATGGCTGCATAGGCTTG +
Preference number: 4 (lower is better)
Translates to: FHPISLRLLDYIVCSSSKWEMKT*NGCIGL
Trigger: CAAGCCTATGCAGCCATTCCAAGTCTTCATTTCCCA...TTTAGATGAACTACAAACTATATAGTCCAGTAGCCTTAAAGAGATTGGGTGGAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000224564.2
3UTR CAA 72 bp GGAAAGGATTCTGAAGGAAAACAGTGGCTTAAAGAGTaGAATAAATACAGGGCTTGGATTTGTCTCAAGCAT +
Preference number: 4 (lower is better)
Translates to: GKDSEGKQWLKE*NKYRAWICLKH
Trigger: ATGCTTGAGACAAATCCAAGCCCTGTATTTATTCAACTCTTTAAGCCACTGTTTTCCTTCAGAATCCTTTCC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
CDS-3UTR CCA 90 bp TTCCACCCAATCTCTTTAAGGCTACTGGACTATATAGTTTGTAGTTCATCTAAACATTCAAAGCCTTCATaGCTTCAACTGCATCTTCTC +
Preference number: 4 (lower is better)
Translates to: FHPISLRLLDYIVCSSSKHSKPS*LQLHLL
Trigger: GAGAAGATGCAGTTGAAGCCATGAAGGCTTTGAATG...TTTAGATGAACTACAAACTATATAGTCCAGTAGCCTTAAAGAGATTGGGTGGAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000224564.2
CDS-3UTR TCA 90 bp TTCCACCCAATCTCTTTAAGGCTACTGGACTATATAGTTTGTAGTTCATCTAAATTTCACACAATGGTATaGGTTCATCCTCAAAGAGGT +
Preference number: 4 (lower is better)
Translates to: FHPISLRLLDYIVCSSSKFHTMV*VHPQRG
Trigger: ACCTCTTTGAGGATGAACTCATACCATTGTGTGAAA...TTTAGATGAACTACAAACTATATAGTCCAGTAGCCTTAAAGAGATTGGGTGGAA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000224564.2
CDS-3UTR TCA 90 bp TTGTCTCAAGCATATCTGAAATACATTGTACTGATTTCTAGAAAGTCCCCAGAGGGCTTCCTGCTTATTTaGGAATGTTACAAATGCATA +
Preference number: 4 (lower is better)
Translates to: LSQAYLKYIVLISRKSPEGFLLI*ECYKCI
Trigger: TATGCATTTGTAACATTCTCAAATAAGCAGGAAGCC...CTCTGGGGACTTTCTAGAAATCAGTACAATGTATTTCAGATATGCTTGAGACAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
CDS-3UTR CCA 90 bp TTCCACCCAATCTCTTTAAGGCTACTGGACTATATAGTTTGTAGTTCATCTAAATTTATCAGCAGCACTTaGGTAGACAATGACATCAAC +
Preference number: 4 (lower is better)
Translates to: FHPISLRLLDYIVCSSSKFISST*VDNDIN
Trigger: GTTGATGTCATTGTCTACCCAAGTGCTGCTGATAAA...TTTAGATGAACTACAAACTATATAGTCCAGTAGCCTTAAAGAGATTGGGTGGAA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000224564.2
CDS-3UTR CCA 90 bp TTGTCTCAAGCATATCTGAAATACATTGTACTGATTTCTAGAAAGTCCCCAGAGATGTCCTTTAGTAGCTaGGAAATGAAGACTTGGAAT +
Preference number: 4 (lower is better)
Translates to: LSQAYLKYIVLISRKSPEMSFSS*EMKTWN
Trigger: ATTCCAAGTCTTCATTTCCCAGCTACTAAAGGACAT...CTCTGGGGACTTTCTAGAAATCAGTACAATGTATTTCAGATATGCTTGAGACAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
CDS-3UTR CCA 90 bp GATTTGTCTCAAGCATATCTGAAATACATTGTACTGATTTCTAGAAAGTCCCCATTTGATCTTGTCCAATaGCAGAATGCAGTTGGTACA +
Preference number: 4 (lower is better)
Translates to: DLSQAYLKYIVLISRKSPFDLVQ*QNAVGT
Trigger: TGTACCAACTGCATTCTGCCATTGGACAAGATCAAA...TGGGGACTTTCTAGAAATCAGTACAATGTATTTCAGATATGCTTGAGACAAATC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
CDS-3UTR GCA 90 bp TTCCACCCAATCTCTTTAAGGCTACTGGACTATATAGTTTGTAGTTCATCTAAAATTAAGTTGCTTGATTaGATTCTTGGCTTCCTGCTT +
Preference number: 4 (lower is better)
Translates to: FHPISLRLLDYIVCSSSKIKLLD*ILGFLL
Trigger: AAGCAGGAAGCCAAGAATGCAATCAAGCAACTTAAT...TTTAGATGAACTACAAACTATATAGTCCAGTAGCCTTAAAGAGATTGGGTGGAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224564.2
CDS-3UTR CCA 90 bp TTCCACCCAATCTCTTTAAGGCTACTGGACTATATAGTTTGTAGTTCATCTAAATCTTTCCACAGCACCTaGTTTAATACTGTTGAATTC +
Preference number: 4 (lower is better)
Translates to: FHPISLRLLDYIVCSSSKSFHST*FNTVEF
Trigger: GAATTCAACAGTATTAAACCAGGTGCTGTGGAAAGA...TTTAGATGAACTACAAACTATATAGTCCAGTAGCCTTAAAGAGATTGGGTGGAA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000224564.2
CDS-3UTR CCA 90 bp TTCCACCCAATCTCTTTAAGGCTACTGGACTATATAGTTTGTAGTTCATCTAAAATGTCCTTTAGTAGCTaGGAAATGAAGACTTGGAAT +
Preference number: 4 (lower is better)
Translates to: FHPISLRLLDYIVCSSSKMSFSS*EMKTWN
Trigger: ATTCCAAGTCTTCATTTCCCAGCTACTAAAGGACAT...TTTAGATGAACTACAAACTATATAGTCCAGTAGCCTTAAAGAGATTGGGTGGAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224564.2
CDS GCA 90 bp TTCCTGGACCAAGCTATATCCTGTGCGCTGGACCAGTGCGCGGAGTaGCGCTTCCTTCTGGGTGCCGCTCAATCCATCCCCGGATTTGTG +
Preference number: 5 (lower is better)
Translates to: FLDQAISCALDQCAE*RFLLGAAQSIPGFV
Trigger: CACAAATCCGGGGATGGATTGAGCGGCACCCAGAAGGAAGCGGCACTCCGCGCACTGGTCCAGCGCACAGGATATAGCTTGGTCCAGGAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
ENSMUST00000224564.2
CDS GCA 90 bp TTGTCCATTTTCCTGGACCAAGCTATATCCTGTGCGCTGGACCAGTaGGCGGAGTGCCGCTTCCTTCTGGGTGCCGCTCAATCCATCCCC +
Preference number: 5 (lower is better)
Translates to: LSIFLDQAISCALDQ*AECRFLLGAAQSIP
Trigger: GGGGATGGATTGAGCGGCACCCAGAAGGAAGCGGCACTCCGCGCACTGGTCCAGCGCACAGGATATAGCTTGGTCCAGGAAAATGGACAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
ENSMUST00000224564.2
CDS TCA 90 bp ACTTCTGGTTCTGCCCAGTCTACTGCAATAGGATGTCCCCACAACTaGATTCTTCCTGGCAGCAGCCTCCGCCTAGCCATGGCGGCTGCT +
Preference number: 5 (lower is better)
Translates to: TSGSAQSTAIGCPHN*ILPGSSLRLAMAAA
Trigger: AGCAGCCGCCATGGCTAGGCGGAGGCTGCTGCCAGGAAGAATTCAGTTGTGGGGACATCCTATTGCAGTAGACTGGGCAGAACCAGAAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
ENSMUST00000224400.2
ENSMUST00000224564.2
CDS CCA 90 bp GCCACCGGTGCCCCGGGTGTACCTAACATAACTGTCCTTGTCCACTaGCTTGGCCAAGGTCACTTCTATTGGGGAACCATCCAGCACCTT +
Preference number: 5 (lower is better)
Translates to: ATGAPGVPNITVLVH*LGQGHFYWGTIQHL
Trigger: AAGGTGCTGGATGGTTCCCCAATAGAAGTGACCTTGGCCAAGCCAGTGGACAAGGACAGTTATGTTAGGTACACCCGGGGCACCGGTGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
ENSMUST00000224400.2
ENSMUST00000224564.2
CDS CCA 90 bp GTATATGCTGCTAAGTCTTGTCCAAGTGTCACTGCTTGCTTGAGCTaGGCTGTAGACACAGGAGCGGTGGCACTGGGGACAGCATATCCT +
Preference number: 5 (lower is better)
Translates to: VYAAKSCPSVTACLS*AVDTGAVALGTAYP
Trigger: AGGATATGCTGTCCCCAGTGCCACCGCTCCTGTGTCTACAGCCCAGCTCAAGCAAGCAGTGACACTTGGACAAGACTTAGCAGCATATAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
CDS-3UTR CAA 90 bp GCTCAGCCTGGGATCATACTCCACACTGTATGCAATGCTGAAGGCCTCTTACAGTCCAAGTGTCACTGCTaGCTTGAGCTGGGCTGTAGA +
Preference number: 5 (lower is better)
Translates to: AQPGIILHTVCNAEGLLQSKCHC*LELGCR
Trigger: TCTACAGCCCAGCTCAAGCAAGCAGTGACACTTGGA...CTGTAAGAGGCCTTCAGCATTGCATACAGTGTGGAGTATGATCCCAGGCTGAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
CDS-3UTR CAA 90 bp CTCAGGAAAGGCATTGCTTTGGGGGAAGGTATGACTTGTGGTCATGAGGGATCTGTAGGTGTATTCTCCTaGCAGCATGGTGTTCCTGCC +
Preference number: 5 (lower is better)
Translates to: LRKGIALGEGMTCGHEGSVGVFS*QHGVPA
Trigger: GGCAGGAACACCATGCTGCAAGGAGAATACACCTAC...AGATCCCTCATGACCACAAGTCATACCTTCCCCCAAAGCAATGCCTTTCCTGAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
CDS-3UTR CAA 90 bp CTCAGGAAAGGCATTGCTTTGGGGGAAGGTATGACTTGTGGTCATGAGGGATCTTCTCTCTTGTCTCCTTaGACGTGGTATCCTCGACCC +
Preference number: 5 (lower is better)
Translates to: LRKGIALGEGMTCGHEGSSLLSP*TWYPRP
Trigger: GGGTCGAGGATACCACGTCAAAGGAGACAAGAGAGA...AGATCCCTCATGACCACAAGTCATACCTTCCCCCAAAGCAATGCCTTTCCTGAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
CDS-3UTR CAA 90 bp TATGCAATGCTGAAGGCCTCTTACAGAGCTTCCTGCTTTCCTCTGGTGTCTAAGGTAGGTGTATTCTCCTaGCAGCATGGTGTTCCTGCC +
Preference number: 5 (lower is better)
Translates to: YAMLKASYRASCFPLVSKVGVFS*QHGVPA
Trigger: GGCAGGAACACCATGCTGCAAGGAGAATACACCTAC...CTTAGACACCAGAGGAAAGCAGGAAGCTCTGTAAGAGGCCTTCAGCATTGCATA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
CDS-3UTR CAA 90 bp CACACTGTATGCAATGCTGAAGGCCTCTTACAGAGCTTCCTGCTTTCCTCTGGTACAAACAATCGGCAATaGTCCACACTGGCACAGACT +
Preference number: 5 (lower is better)
Translates to: HTVCNAEGLLQSFLLSSGTNNRQ*STLAQT
Trigger: AGTCTGTGCCAGTGTGGACAATTGCCGATTGTTTGT...ACCAGAGGAAAGCAGGAAGCTCTGTAAGAGGCCTTCAGCATTGCATACAGTGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
CDS-3UTR CAA 90 bp CTCAGGAAAGGCATTGCTTTGGGGGAAGGTATGACTTGTGGTCATGAGGGATCTCTGATGAGAGCCCTGTaGCTGAGATGTCCTTTAGTA +
Preference number: 5 (lower is better)
Translates to: LRKGIALGEGMTCGHEGSLMRAL*LRCPLV
Trigger: TACTAAAGGACATCTCAGCAACAGGGCTCTCATCAG...AGATCCCTCATGACCACAAGTCATACCTTCCCCCAAAGCAATGCCTTTCCTGAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
CDS-3UTR CAA 90 bp TCTGTGATTTGGGAATCCTTGAGCAGGGAAAGGATTCTGAAGGAAAACAGTGGCAATGGCAGAATGCAGTaGGTACACTGGCTGTCCCCA +
Preference number: 5 (lower is better)
Translates to: SVIWESLSRERILKENSGNGRMQ*VHWLSP
Trigger: TGGGGACAGCCAGTGTACCAACTGCATTCTGCCATT...GCCACTGTTTTCCTTCAGAATCCTTTCCCTGCTCAAGGATTCCCAAATCACAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
CDS-3UTR CAA 90 bp ATACTCCACACTGTATGCAATGCTGAAGGCCTCTTACAGAGCTTCCTGCTTTCCTCCCTCTTTTTGGTTTaGGGGATTCCTCCCACAAAC +
Preference number: 5 (lower is better)
Translates to: ILHTVCNAEGLLQSFLLSSLFLV*GIPPTN
Trigger: GTTTGTGGGAGGAATCCCCAAAACCAAAAAGAGGGA...GGAAAGCAGGAAGCTCTGTAAGAGGCCTTCAGCATTGCATACAGTGTGGAGTAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
CDS-3UTR CAA 90 bp ATACGACGAATAAATCTTGTGGTCTCAGGAAAGGCATTGCTTTGGGGGAAGGTACCAAGGTCACTTCTATaGGGGAACCATCCAGCACCT +
Preference number: 5 (lower is better)
Translates to: IRRINLVVSGKALLWGKVPRSLL*GNHPAP
Trigger: AGGTGCTGGATGGTTCCCCAATAGAAGTGACCTTGG...TACCTTCCCCCAAAGCAATGCCTTTCCTGAGACCACAAGATTTATTCGTCGTAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
CDS-3UTR CAA 90 bp CACACTGTATGCAATGCTGAAGGCCTCTTACAGAGCTTCCTGCTTTCCTCTGGTGGTAGACCTCATAGGTaGTATATGCTGCTAAGTCTT +
Preference number: 5 (lower is better)
Translates to: HTVCNAEGLLQSFLLSSGGRPHR*YMLLSL
Trigger: AAGACTTAGCAGCATATACAACCTATGAGGTCTACC...ACCAGAGGAAAGCAGGAAGCTCTGTAAGAGGCCTTCAGCATTGCATACAGTGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
CDS-3UTR CAA 90 bp AAGTCATCTTTCACTCTAGAACTTGGTACTGGCATGGTTTCTGTGATTTGGGAATCTCTCTTGTCTCCTTaGACGTGGTATCCTCGACCC +
Preference number: 5 (lower is better)
Translates to: KSSFTLELGTGMVSVIWESLLSP*TWYPRP
Trigger: GGGTCGAGGATACCACGTCAAAGGAGACAAGAGAGA...TTCCCAAATCACAGAAACCATGCCAGTACCAAGTTCTAGAGTGAAAGATGACTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
CDS-3UTR CAA 90 bp TCCACACTGTATGCAATGCTGAAGGCCTCTTACAGAGCTTCCTGCTTTCCTCTGTGGCTTCCTGCTTATTaGAGAATGTTACAAATGCAT +
Preference number: 5 (lower is better)
Translates to: STLYAMLKASYRASCFPLWLPAY*RMLQMH
Trigger: ATGCATTTGTAACATTCTCAAATAAGCAGGAAGCCA...CAGAGGAAAGCAGGAAGCTCTGTAAGAGGCCTTCAGCATTGCATACAGTGTGGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
CDS-3UTR CAA 90 bp TATCCTCTTCCTGAGACACTCAGGATCCTTGGAAGAACAACTTTTGCTGTCCGTTGCTTGATTGCATTCTaGGCTTCCTGCTTATTTGAG +
Preference number: 5 (lower is better)
Translates to: YPLPETLRILGRTTFAVRCLIAF*ASCLFE
Trigger: CTCAAATAAGCAGGAAGCCAAGAATGCAATCAAGCA...ACGGACAGCAAAAGTTGTTCTTCCAAGGATCCTGAGTGTCTCAGGAAGAGGATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
CDS-3UTR CAA 90 bp GAACTGGGTAGAGAACTCAAAGGTAACCTCAATTTTAATGCAACTTCTTGGAGACCAAGGTCACTTCTATaGGGGAACCATCCAGCACCT +
Preference number: 5 (lower is better)
Translates to: ELGRELKGNLNFNATSWRPRSLL*GNHPAP
Trigger: AGGTGCTGGATGGTTCCCCAATAGAAGTGACCTTGG...TCTCCAAGAAGTTGCATTAAAATTGAGGTTACCTTTGAGTTCTCTACCCAGTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000075838.8
CDS-3UTR CAA 90 bp CAGTGGCTTAAAGAGTTGAATAAATACAGGGCTTGGATTTGTCTCAAGCATATCAATGGCAGAATGCAGTaGGTACACTGGCTGTCCCCA +
Preference number: 5 (lower is better)
Translates to: QWLKELNKYRAWICLKHINGRMQ*VHWLSP
Trigger: TGGGGACAGCCAGTGTACCAACTGCATTCTGCCATT...GATATGCTTGAGACAAATCCAAGCCCTGTATTTATTCAACTCTTTAAGCCACTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
CDS-3UTR CAA 90 bp CAGTGGCTTAAAGAGTTGAATAAATACAGGGCTTGGATTTGTCTCAAGCATATCTCCAAGTGTCACTGCTaGCTTGAGCTGGGCTGTAGA +
Preference number: 5 (lower is better)
Translates to: QWLKELNKYRAWICLKHISKCHC*LELGCR
Trigger: TCTACAGCCCAGCTCAAGCAAGCAGTGACACTTGGA...GATATGCTTGAGACAAATCCAAGCCCTGTATTTATTCAACTCTTTAAGCCACTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
CDS-3UTR CAA 90 bp CTCTTCCTGAGACACTCAGGATCCTTGGAAGAACAACTTTTGCTGTCCGTGGATTGGCTTCCTGCTTATTaGAGAATGTTACAAATGCAT +
Preference number: 5 (lower is better)
Translates to: LFLRHSGSLEEQLLLSVDWLPAY*RMLQMH
Trigger: ATGCATTTGTAACATTCTCAAATAAGCAGGAAGCCA...ATCCACGGACAGCAAAAGTTGTTCTTCCAAGGATCCTGAGTGTCTCAGGAAGAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
CDS-3UTR CAA 90 bp GTTTCACTATCAAGGGACTCAGTCATAGTAAAGCCAGCTGCACATATTGAAAGAACAAACAATCGGCAATaGTCCACACTGGCACAGACT +
Preference number: 5 (lower is better)
Translates to: VSLSRDSVIVKPAAHIERTNNRQ*STLAQT
Trigger: AGTCTGTGCCAGTGTGGACAATTGCCGATTGTTTGT...TCTTTCAATATGTGCAGCTGGCTTTACTATGACTGAGTCCCTTGATAGTGAAAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075838.8
CDS-3UTR CAA 90 bp ACCATGATGGGTGTAAGGCTTTCCTGGAATAGTTTCACTATCAAGGGACTCAGTAGTTTGTCTTCTCTCTaGTCTCCTTTGACGTGGTAT +
Preference number: 5 (lower is better)
Translates to: TMMGVRLSWNSFTIKGLSSLSSL*SPLTWY
Trigger: ATACCACGTCAAAGGAGACAAGAGAGAAGACAAACT...ACTGAGTCCCTTGATAGTGAAACTATTCCAGGAAAGCCTTACACCCATCATGGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075838.8
CDS-3UTR CAA 90 bp TTCCACCCAATCTCTTTAAGGCTACTGGACTATATAGTTTGTAGTTCATCTAAACCAAGGTCACTTCTATaGGGGAACCATCCAGCACCT +
Preference number: 5 (lower is better)
Translates to: FHPISLRLLDYIVCSSSKPRSLL*GNHPAP
Trigger: AGGTGCTGGATGGTTCCCCAATAGAAGTGACCTTGG...TTTAGATGAACTACAAACTATATAGTCCAGTAGCCTTAAAGAGATTGGGTGGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224564.2
CDS-3UTR CAA 90 bp TTCCACCCAATCTCTTTAAGGCTACTGGACTATATAGTTTGTAGTTCATCTAAAGTAGGTGTATTCTCCTaGCAGCATGGTGTTCCTGCC +
Preference number: 5 (lower is better)
Translates to: FHPISLRLLDYIVCSSSKVGVFS*QHGVPA
Trigger: GGCAGGAACACCATGCTGCAAGGAGAATACACCTAC...TTTAGATGAACTACAAACTATATAGTCCAGTAGCCTTAAAGAGATTGGGTGGAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000224564.2
CDS-3UTR CAA 90 bp GATTTGGGAATCCTTGAGCAGGGAAAGGATTCTGAAGGAAAACAGTGGCTTAAAAGTTTGTCTTCTCTCTaGTCTCCTTTGACGTGGTAT +
Preference number: 5 (lower is better)
Translates to: DLGILEQGKDSEGKQWLKSLSSL*SPLTWY
Trigger: ATACCACGTCAAAGGAGACAAGAGAGAAGACAAACT...TTTAAGCCACTGTTTTCCTTCAGAATCCTTTCCCTGCTCAAGGATTCCCAAATC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
CDS-3UTR CAA 90 bp AGTAATACGACGAATAAATCTTGTGGTCTCAGGAAAGGCATTGCTTTGGGGGAAGGTAGACCTCATAGGTaGTATATGCTGCTAAGTCTT +
Preference number: 5 (lower is better)
Translates to: SNTTNKSCGLRKGIALGEGRPHR*YMLLSL
Trigger: AAGACTTAGCAGCATATACAACCTATGAGGTCTACC...TTCCCCCAAAGCAATGCCTTTCCTGAGACCACAAGATTTATTCGTCGTATTACT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
CDS-3UTR CAA 90 bp AAGTCATCTTTCACTCTAGAACTTGGTACTGGCATGGTTTCTGTGATTTGGGAATGCTTGATTGCATTCTaGGCTTCCTGCTTATTTGAG +
Preference number: 5 (lower is better)
Translates to: KSSFTLELGTGMVSVIWECLIAF*ASCLFE
Trigger: CTCAAATAAGCAGGAAGCCAAGAATGCAATCAAGCA...TTCCCAAATCACAGAAACCATGCCAGTACCAAGTTCTAGAGTGAAAGATGACTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
CDS-3UTR CAA 90 bp TTGTCTCAAGCATATCTGAAATACATTGTACTGATTTCTAGAAAGTCCCCAGAGCTGATGAGAGCCCTGTaGCTGAGATGTCCTTTAGTA +
Preference number: 5 (lower is better)
Translates to: LSQAYLKYIVLISRKSPELMRAL*LRCPLV
Trigger: TACTAAAGGACATCTCAGCAACAGGGCTCTCATCAG...CTCTGGGGACTTTCTAGAAATCAGTACAATGTATTTCAGATATGCTTGAGACAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
CDS-3UTR CAA 90 bp TTCCACCCAATCTCTTTAAGGCTACTGGACTATATAGTTTGTAGTTCATCTAAAACAAACAATCGGCAATaGTCCACACTGGCACAGACT +
Preference number: 5 (lower is better)
Translates to: FHPISLRLLDYIVCSSSKTNNRQ*STLAQT
Trigger: AGTCTGTGCCAGTGTGGACAATTGCCGATTGTTTGT...TTTAGATGAACTACAAACTATATAGTCCAGTAGCCTTAAAGAGATTGGGTGGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224564.2
CDS-3UTR CAA 90 bp GATTTGTCTCAAGCATATCTGAAATACATTGTACTGATTTCTAGAAAGTCCCCATCCCTCTTTTTGGTTTaGGGGATTCCTCCCACAAAC +
Preference number: 5 (lower is better)
Translates to: DLSQAYLKYIVLISRKSPSLFLV*GIPPTN
Trigger: GTTTGTGGGAGGAATCCCCAAAACCAAAAAGAGGGA...TGGGGACTTTCTAGAAATCAGTACAATGTATTTCAGATATGCTTGAGACAAATC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
CDS-3UTR CAA 90 bp TTCCACCCAATCTCTTTAAGGCTACTGGACTATATAGTTTGTAGTTCATCTAAATCCCTCTTTTTGGTTTaGGGGATTCCTCCCACAAAC +
Preference number: 5 (lower is better)
Translates to: FHPISLRLLDYIVCSSSKSLFLV*GIPPTN
Trigger: GTTTGTGGGAGGAATCCCCAAAACCAAAAAGAGGGA...TTTAGATGAACTACAAACTATATAGTCCAGTAGCCTTAAAGAGATTGGGTGGAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000224564.2
CDS-3UTR CAA 90 bp TTCCACCCAATCTCTTTAAGGCTACTGGACTATATAGTTTGTAGTTCATCTAAACTGATGAGAGCCCTGTaGCTGAGATGTCCTTTAGTA +
Preference number: 5 (lower is better)
Translates to: FHPISLRLLDYIVCSSSKLMRAL*LRCPLV
Trigger: TACTAAAGGACATCTCAGCAACAGGGCTCTCATCAG...TTTAGATGAACTACAAACTATATAGTCCAGTAGCCTTAAAGAGATTGGGTGGAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000224564.2
CDS-3UTR CAA 90 bp GAACTGGGTAGAGAACTCAAAGGTAACCTCAATTTTAATGCAACTTCTTGGAGATTTTCACGGAAGACATaGTGTCCTCATCAACTTCAA +
Preference number: 5 (lower is better)
Translates to: ELGRELKGNLNFNATSWRFSRKT*CPHQLQ
Trigger: TTGAAGTTGATGAGGACACAATGTCTTCCGTGAAAA...TCTCCAAGAAGTTGCATTAAAATTGAGGTTACCTTTGAGTTCTCTACCCAGTTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000075838.8
CDS-3UTR CAA 90 bp TTGTCTCAAGCATATCTGAAATACATTGTACTGATTTCTAGAAAGTCCCCAGAGTTTTCACGGAAGACATaGTGTCCTCATCAACTTCAA +
Preference number: 5 (lower is better)
Translates to: LSQAYLKYIVLISRKSPEFSRKT*CPHQLQ
Trigger: TTGAAGTTGATGAGGACACAATGTCTTCCGTGAAAA...CTCTGGGGACTTTCTAGAAATCAGTACAATGTATTTCAGATATGCTTGAGACAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
CDS-3UTR CAA 90 bp TTCCACCCAATCTCTTTAAGGCTACTGGACTATATAGTTTGTAGTTCATCTAAATTTTCACGGAAGACATaGTGTCCTCATCAACTTCAA +
Preference number: 5 (lower is better)
Translates to: FHPISLRLLDYIVCSSSKFSRKT*CPHQLQ
Trigger: TTGAAGTTGATGAGGACACAATGTCTTCCGTGAAAA...TTTAGATGAACTACAAACTATATAGTCCAGTAGCCTTAAAGAGATTGGGTGGAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000224564.2
CDS-3UTR CAA 90 bp TTCCACCCAATCTCTTTAAGGCTACTGGACTATATAGTTTGTAGTTCATCTAAATGGCTTCCTGCTTATTaGAGAATGTTACAAATGCAT +
Preference number: 5 (lower is better)
Translates to: FHPISLRLLDYIVCSSSKWLPAY*RMLQMH
Trigger: ATGCATTTGTAACATTCTCAAATAAGCAGGAAGCCA...TTTAGATGAACTACAAACTATATAGTCCAGTAGCCTTAAAGAGATTGGGTGGAA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000224564.2
CDS GCA 72 bp CAAGCTATATCCTGTGCGCTGGACCAGTGCGCGGAGTaGCGCTTCCTTCTGGGTGCCGCTCAATCCATCCCC +
Preference number: 6 (lower is better)
Translates to: QAISCALDQCAE*RFLLGAAQSIP
Trigger: GGGGATGGATTGAGCGGCACCCAGAAGGAAGCGGCACTCCGCGCACTGGTCCAGCGCACAGGATATAGCTTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
ENSMUST00000224564.2
CDS GCA 72 bp ATATCCTGGGAACACAGTGGCAGAAGTGGCCGTGGGTaGTGTAGTCCCAGCGTCCCCTCCTTCTGTGGGGAT +
Preference number: 6 (lower is better)
Translates to: ISWEHSGRSGRG*CSPSVPSFCGD
Trigger: ATCCCCACAGAAGGAGGGGACGCTGGGACTACAGCACCCACGGCCACTTCTGCCACTGTGTTCCCAGGATAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
CDS GCA 72 bp GCTGGACCAGTGCGCGGAGTGCCGCTTCCTTCTGGGTaGCGCTCAATCCATCCCCGGATTTGTGATTTGATT +
Preference number: 6 (lower is better)
Translates to: AGPVRGVPLPSG*RSIHPRICDLI
Trigger: AATCAAATCACAAATCCGGGGATGGATTGAGCGGCACCCAGAAGGAAGCGGCACTCCGCGCACTGGTCCAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
ENSMUST00000224564.2
CDS CCA 72 bp TGTCCATTTTCCTGGACCAAGCTATATCCTGTGCGCTaGACCAGTGCGCGGAGTGCCGCTTCCTTCTGGGTG +
Preference number: 6 (lower is better)
Translates to: CPFSWTKLYPVR*TSARSAASFWV
Trigger: CACCCAGAAGGAAGCGGCACTCCGCGCACTGGTCCAGCGCACAGGATATAGCTTGGTCCAGGAAAATGGACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
ENSMUST00000224564.2
CDS CCA 72 bp GCTAAGTCTTGTCCAAGTGTCACTGCTTGCTTGAGCTaGGCTGTAGACACAGGAGCGGTGGCACTGGGGACA +
Preference number: 6 (lower is better)
Translates to: AKSCPSVTACLS*AVDTGAVALGT
Trigger: TGTCCCCAGTGCCACCGCTCCTGTGTCTACAGCCCAGCTCAAGCAAGCAGTGACACTTGGACAAGACTTAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
CDS TCA 72 bp TCTGCCCAGTCTACTGCAATAGGATGTCCCCACAACTaGATTCTTCCTGGCAGCAGCCTCCGCCTAGCCATG +
Preference number: 6 (lower is better)
Translates to: SAQSTAIGCPHN*ILPGSSLRLAM
Trigger: CATGGCTAGGCGGAGGCTGCTGCCAGGAAGAATTCAGTTGTGGGGACATCCTATTGCAGTAGACTGGGCAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
ENSMUST00000224400.2
ENSMUST00000224564.2
CDS TCA 72 bp TCGCTTCATCCACATAGGCGCTTAGCTTTGGTGGTATaGAAGGGTGGATTGCAGGATTCTGGCTGGCCAGCG +
Preference number: 6 (lower is better)
Translates to: SLHPHRRLALVV*KGGLQDSGWPA
Trigger: CGCTGGCCAGCCAGAATCCTGCAATCCACCCTTTCATACCACCAAAGCTAAGCGCCTATGTGGATGAAGCGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
CDS CCA 72 bp GCCCCGGGTGTACCTAACATAACTGTCCTTGTCCACTaGCTTGGCCAAGGTCACTTCTATTGGGGAACCATC +
Preference number: 6 (lower is better)
Translates to: APGVPNITVLVH*LGQGHFYWGTI
Trigger: GATGGTTCCCCAATAGAAGTGACCTTGGCCAAGCCAGTGGACAAGGACAGTTATGTTAGGTACACCCGGGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
ENSMUST00000224400.2
ENSMUST00000224564.2
CDS CCA 72 bp GGATTCCTCCCACAAACAATCGGCAATTGTCCACACTaGCACAGACTCCCAAGAGACGGCCAGTCCGAATTT +
Preference number: 6 (lower is better)
Translates to: GFLPQTIGNCPH*HRLPRDGQSEF
Trigger: AAATTCGGACTGGCCGTCTCTTGGGAGTCTGTGCCAGTGTGGACAATTGCCGATTGTTTGTGGGAGGAATCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
ENSMUST00000224400.2
ENSMUST00000224564.2
CDS CAA 72 bp TTGGTTTTGGGGATTCCTCCCACAAACAATCGGCAATaGTCCACACTGGCACAGACTCCCAAGAGACGGCCA +
Preference number: 6 (lower is better)
Translates to: LVLGIPPTNNRQ*STLAQTPKRRP
Trigger: TGGCCGTCTCTTGGGAGTCTGTGCCAGTGTGGACAATTGCCGATTGTTTGTGGGAGGAATCCCCAAAACCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
ENSMUST00000224400.2
ENSMUST00000224564.2
CDS GCA 72 bp AGACATTGTGTCCTCATCAACTTCAACTTCTGGTTCTaGCCAGTCTACTGCAATAGGATGTCCCCACAACTG +
Preference number: 6 (lower is better)
Translates to: RHCVLINFNFWF*PVYCNRMSPQL
Trigger: CAGTTGTGGGGACATCCTATTGCAGTAGACTGGGCAGAACCAGAAGTTGAAGTTGATGAGGACACAATGTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
ENSMUST00000224400.2
ENSMUST00000224564.2
CDS GCA 72 bp TTAGAAGGTTCCATATGCATCGCCTCGGGTGGTCAGTaGAAAAGTAGGGTAGACCTCATAGGTTGTATATGC +
Preference number: 6 (lower is better)
Translates to: LEGSICIASGGQ*KSRVDLIGCIC
Trigger: GCATATACAACCTATGAGGTCTACCCTACTTTTGCACTGACCACCCGAGGCGATGCATATGGAACCTTCTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
CDS CAA 72 bp TTCATCTCTGATAAGATTTCTTCCCTCTTTTTGGTTTaGGGGATTCCTCCCACAAACAATCGGCAATTGTCC +
Preference number: 6 (lower is better)
Translates to: FISDKISSLFLV*GIPPTNNRQLS
Trigger: GGACAATTGCCGATTGTTTGTGGGAGGAATCCCCAAAACCAAAAAGAGGGAAGAAATCTTATCAGAGATGAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
ENSMUST00000224400.2
ENSMUST00000224564.2
CDS TCA 72 bp AAGTTGCTTGATTGCATTCTTGGCTTCCTGCTTATTTaGGAATGTTACAAATGCATAGCCTCTGTTGTTACC +
Preference number: 6 (lower is better)
Translates to: KLLDCILGFLLI*ECYKCIASVVT
Trigger: GGTAACAACAGAGGCTATGCATTTGTAACATTCTCAAATAAGCAGGAAGCCAAGAATGCAATCAAGCAACTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075838.8
ENSMUST00000224304.2
ENSMUST00000224400.2
ENSMUST00000224564.2