RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for A1BG (Mus musculus)

Ensembl gene IDs: ENSMUSG00000022347

Ensembl transcript IDs: ENSMUST00000096418.5, ENSMUST00000228632.2

Found 79 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CAA 90 bp TGTGTCTGCAGCCACATTAGCGGCCTAGACAAAGAAATGGCTTCATaGACTCAGCAAGTTGCCACAGGGCCTTTCCACACTGACCTTGGT +
Preference number: 2 (lower is better)
Translates to: CVCSHISGLDKEMAS*TQQVATGPFHTDLG
Trigger: ACCAAGGTCAGTGTGGAAAGGCCCTGTGGCAACTTGCTGAGTCAATGAAGCCATTTCTTTGTCTAGGCCGCTAATGTGGCTGCAGACACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096418.5
CDS-3UTR CCA 90 bp TCATTGACTCAGCAAGTTGCCACAGGGCCTTTCCACACTGACCTTGGTGAAGCACTTCCAGCCTTGGCTTaGGTGGTGGCCCATTCACCC +
Preference number: 4 (lower is better)
Translates to: SLTQQVATGPFHTDLGEALPALA*VVAHSP
Trigger: GGGTGAATGGGCCACCACCCAAGCCAAGGCTGGAAG...TGCTTCACCAAGGTCAGTGTGGAAAGGCCCTGTGGCAACTTGCTGAGTCAATGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096418.5
CDS-3UTR TCA 90 bp TCATTGACTCAGCAAGTTGCCACAGGGCCTTTCCACACTGACCTTGGTGAAGCATCCGGTAGCGGCAGGTaGAAGGACCTGGGTTATCCA +
Preference number: 4 (lower is better)
Translates to: SLTQQVATGPFHTDLGEASGSGR*KDLGYP
Trigger: TGGATAACCCAGGTCCTTTCACCTGCCGCTACCGGA...TGCTTCACCAAGGTCAGTGTGGAAAGGCCCTGTGGCAACTTGCTGAGTCAATGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096418.5
CDS-3UTR TCA 90 bp ATTAGCGGCCTAGACAAAGAAATGGCTTCATTGACTCAGCAAGTTGCCACAGGGTTCCTGGGCCCAGAGTaGACCCCCAGAGCAGCAGTA +
Preference number: 4 (lower is better)
Translates to: ISGLDKEMASLTQQVATGFLGPE*TPRAAV
Trigger: TACTGCTGCTCTGGGGGTTCACTCTGGGCCCAGGAA...CCCTGTGGCAACTTGCTGAGTCAATGAAGCCATTTCTTTGTCTAGGCCGCTAAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000096418.5
CDS-3UTR CCA 90 bp TCATTGACTCAGCAAGTTGCCACAGGGCCTTTCCACACTGACCTTGGTGAAGCACTGACCCTAGGCACATaGCCGTGGCATCGAAAGATG +
Preference number: 4 (lower is better)
Translates to: SLTQQVATGPFHTDLGEALTLGT*PWHRKM
Trigger: CATCTTTCGATGCCACGGCCATGTGCCTAGGGTCAG...TGCTTCACCAAGGTCAGTGTGGAAAGGCCCTGTGGCAACTTGCTGAGTCAATGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096418.5
CDS-3UTR GCA 90 bp TCATTGACTCAGCAAGTTGCCACAGGGCCTTTCCACACTGACCTTGGTGAAGCACATGGGTTAGGTAGCTaGAGCTGTAGTTGCCAGGCT +
Preference number: 4 (lower is better)
Translates to: SLTQQVATGPFHTDLGEAHGLGS*SCSCQA
Trigger: AGCCTGGCAACTACAGCTGCAGCTACCTAACCCATG...TGCTTCACCAAGGTCAGTGTGGAAAGGCCCTGTGGCAACTTGCTGAGTCAATGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096418.5
CDS-3UTR CCA 90 bp AGCGGCCTAGACAAAGAAATGGCTTCATTGACTCAGCAAGTTGCCACAGGGCCTGCTGTTCCCTTGTGCTaGACATCAGGTTTCTGGACG +
Preference number: 4 (lower is better)
Translates to: SGLDKEMASLTQQVATGPAVPLC*TSGFWT
Trigger: CGTCCAGAAACCTGATGTCCAGCACAAGGGAACAGC...AGGCCCTGTGGCAACTTGCTGAGTCAATGAAGCCATTTCTTTGTCTAGGCCGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096418.5
CDS-3UTR TCA 90 bp TGTGTCTGCAGCCACATTAGCGGCCTAGACAAAGAAATGGCTTCATTGACTCAGGGTTCCAGCAGGGACTaGGGCTCTGCCCATAGTTTA +
Preference number: 4 (lower is better)
Translates to: CVCSHISGLDKEMASLTQGSSRD*GSAHSL
Trigger: TAAACTATGGGCAGAGCCTCAGTCCCTGCTGGAACC...CTGAGTCAATGAAGCCATTTCTTTGTCTAGGCCGCTAATGTGGCTGCAGACACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096418.5
CDS-3UTR GCA 90 bp TCATTGACTCAGCAAGTTGCCACAGGGCCTTTCCACACTGACCTTGGTGAAGCACATTCCGAGGAGCTTTaGAGGCAAGGGTCTCATATG +
Preference number: 4 (lower is better)
Translates to: SLTQQVATGPFHTDLGEAHSEEL*RQGSHM
Trigger: CATATGAGACCCTTGCCTGCAAAGCTCCTCGGAATG...TGCTTCACCAAGGTCAGTGTGGAAAGGCCCTGTGGCAACTTGCTGAGTCAATGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096418.5
CDS-3UTR GCA 90 bp AGCGGCCTAGACAAAGAAATGGCTTCATTGACTCAGCAAGTTGCCACAGGGCCTAGCACCTTCCCTCCTTaGCTGAGTTGGAATTCAGCT +
Preference number: 4 (lower is better)
Translates to: SGLDKEMASLTQQVATGPSTFPP*LSWNSA
Trigger: AGCTGAATTCCAACTCAGGCAAGGAGGGAAGGTGCT...AGGCCCTGTGGCAACTTGCTGAGTCAATGAAGCCATTTCTTTGTCTAGGCCGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096418.5
CDS-3UTR CCA 90 bp TCATTGACTCAGCAAGTTGCCACAGGGCCTTTCCACACTGACCTTGGTGAAGCACCTCCTTGCCTGAGTTaGAATTCAGCTGCATTCCGA +
Preference number: 4 (lower is better)
Translates to: SLTQQVATGPFHTDLGEAPPCLS*NSAAFR
Trigger: TCGGAATGCAGCTGAATTCCAACTCAGGCAAGGAGG...TGCTTCACCAAGGTCAGTGTGGAAAGGCCCTGTGGCAACTTGCTGAGTCAATGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096418.5
CDS-3UTR CCA 90 bp CAGTGTACAGCTCTGGAAATATTAAGAACCCAAAACCTCAAACACAGCTCAGGACAGCCTTGGCTTGGGTaGTGGCCCATTCACCCGCAG +
Preference number: 4 (lower is better)
Translates to: QCTALEILRTQNLKHSSGQPWLG*WPIHPQ
Trigger: CTGCGGGTGAATGGGCCACCACCCAAGCCAAGGCTG...TCCTGAGCTGTGTTTGAGGTTTTGGGTTCTTAATATTTCCAGAGCTGTACACTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096418.5
CDS-3UTR TCA 90 bp TGTGTCTGCAGCCACATTAGCGGCCTAGACAAAGAAATGGCTTCATTGACTCAGCAGGGAAAAGCGGTATaGCAGCACCTGTGTCTCAAG +
Preference number: 4 (lower is better)
Translates to: CVCSHISGLDKEMASLTQQGKAV*QHLCLK
Trigger: CTTGAGACACAGGTGCTGTCATACCGCTTTTCCCTG...CTGAGTCAATGAAGCCATTTCTTTGTCTAGGCCGCTAATGTGGCTGCAGACACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096418.5
CDS-3UTR TCA 90 bp TGTGTCTGCAGCCACATTAGCGGCCTAGACAAAGAAATGGCTTCATTGACTCAGAGTGGGTGGAGCCTGTaGGGCATACATCTTGATGGT +
Preference number: 4 (lower is better)
Translates to: CVCSHISGLDKEMASLTQSGWSL*GIHLDG
Trigger: ACCATCAAGATGTATGCCTCACAGGCTCCACCCACT...CTGAGTCAATGAAGCCATTTCTTTGTCTAGGCCGCTAATGTGGCTGCAGACACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096418.5
CDS-3UTR GCA 90 bp ATTAGCGGCCTAGACAAAGAAATGGCTTCATTGACTCAGCAAGTTGCCACAGGGCCAGCTGTTCCCTTGTaGTGGACATCAGGTTTCTGG +
Preference number: 4 (lower is better)
Translates to: ISGLDKEMASLTQQVATGPAVPL*WTSGFW
Trigger: CCAGAAACCTGATGTCCAGCACAAGGGAACAGCTGG...CCCTGTGGCAACTTGCTGAGTCAATGAAGCCATTTCTTTGTCTAGGCCGCTAAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096418.5
CDS-3UTR CCA 90 bp ATTAGCGGCCTAGACAAAGAAATGGCTTCATTGACTCAGCAAGTTGCCACAGGGCCATCAAACACAGAGTaGGTGGAGCCTGTGAGGCAT +
Preference number: 4 (lower is better)
Translates to: ISGLDKEMASLTQQVATGPSNTE*VEPVRH
Trigger: ATGCCTCACAGGCTCCACCCACTCTGTGTTTGATGG...CCCTGTGGCAACTTGCTGAGTCAATGAAGCCATTTCTTTGTCTAGGCCGCTAAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096418.5
3UTR CAA 72 bp AGCCACATTAGCGGCCTAGACAAAGAAATGGCTTCATaGACTCAGCAAGTTGCCACAGGGCCTTTCCACACT +
Preference number: 4 (lower is better)
Translates to: SHISGLDKEMAS*TQQVATGPFHT
Trigger: AGTGTGGAAAGGCCCTGTGGCAACTTGCTGAGTCAATGAAGCCATTTCTTTGTCTAGGCCGCTAATGTGGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096418.5
CDS-3UTR TCA 90 bp TCATTGACTCAGCAAGTTGCCACAGGGCCTTTCCACACTGACCTTGGTGAAGCAGTGAGGCATACATCTTaGTGGTCACAATATCACTGG +
Preference number: 4 (lower is better)
Translates to: SLTQQVATGPFHTDLGEAVRHTS*WSQYHW
Trigger: CCAGTGATATTGTGACCATCAAGATGTATGCCTCAC...TGCTTCACCAAGGTCAGTGTGGAAAGGCCCTGTGGCAACTTGCTGAGTCAATGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096418.5
CDS-3UTR TCA 90 bp ATTAGCGGCCTAGACAAAGAAATGGCTTCATTGACTCAGCAAGTTGCCACAGGGGTGGGGCTAAACCCATaGATTTTCAGCACCTTCCCT +
Preference number: 4 (lower is better)
Translates to: ISGLDKEMASLTQQVATGVGLNP*IFSTFP
Trigger: AGGGAAGGTGCTGAAAATTCATGGGTTTAGCCCCAC...CCCTGTGGCAACTTGCTGAGTCAATGAAGCCATTTCTTTGTCTAGGCCGCTAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000096418.5
CDS-3UTR CCA 90 bp TGCAGCCACATTAGCGGCCTAGACAAAGAAATGGCTTCATTGACTCAGCAAGTTTGGACATCAGGTTTCTaGACGCCATCCACTCCTTCC +
Preference number: 4 (lower is better)
Translates to: CSHISGLDKEMASLTQQVWTSGF*TPSTPS
Trigger: GGAAGGAGTGGATGGCGTCCAGAAACCTGATGTCCA...AACTTGCTGAGTCAATGAAGCCATTTCTTTGTCTAGGCCGCTAATGTGGCTGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096418.5
CDS-3UTR CCA 90 bp ATTAGCGGCCTAGACAAAGAAATGGCTTCATTGACTCAGCAAGTTGCCACAGGGTGGTCACAATATCACTaGGCTCAGAGGGTTCACCTG +
Preference number: 4 (lower is better)
Translates to: ISGLDKEMASLTQQVATGWSQYH*AQRVHL
Trigger: CAGGTGAACCCTCTGAGCCCAGTGATATTGTGACCA...CCCTGTGGCAACTTGCTGAGTCAATGAAGCCATTTCTTTGTCTAGGCCGCTAAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096418.5
CDS-3UTR GCA 90 bp TGTGTCTGCAGCCACATTAGCGGCCTAGACAAAGAAATGGCTTCATTGACTCAGTCACCTCCACAGCATTaGTTAGCATGGTCCACTTGT +
Preference number: 4 (lower is better)
Translates to: CVCSHISGLDKEMASLTQSPPQH*LAWSTC
Trigger: ACAAGTGGACCATGCTAAGCAATGCTGTGGAGGTGA...CTGAGTCAATGAAGCCATTTCTTTGTCTAGGCCGCTAATGTGGCTGCAGACACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096418.5
CDS-3UTR GCA 90 bp TGTGTCTGCAGCCACATTAGCGGCCTAGACAAAGAAATGGCTTCATTGACTCAGGAGTTGGAATTCAGCTaGATTCCGAGGAGCTTTGCA +
Preference number: 4 (lower is better)
Translates to: CVCSHISGLDKEMASLTQELEFS*IPRSFA
Trigger: TGCAAAGCTCCTCGGAATGCAGCTGAATTCCAACTC...CTGAGTCAATGAAGCCATTTCTTTGTCTAGGCCGCTAATGTGGCTGCAGACACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096418.5
CDS-3UTR TCA 90 bp CTTACATTGAGAAGAATGGGTATTATACCTGTCTTGAACCCTTCCCAAGAACACTTCAGTGCTGGCAGGTaGATGTCAACAGGGGGTTCC +
Preference number: 4 (lower is better)
Translates to: LTLRRMGIIPVLNPSQEHFSAGR*MSTGGS
Trigger: GGAACCCCCTGTTGACATTCACCTGCCAGCACTGAA...GTGTTCTTGGGAAGGGTTCAAGACAGGTATAATACCCATTCTTCTCAATGTAAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000096418.5
CDS-3UTR GCA 90 bp TGCAGCCACATTAGCGGCCTAGACAAAGAAATGGCTTCATTGACTCAGCAAGTTGACCCAGATGTACTGTaGTTTTCCACAGAGCTTCCA +
Preference number: 4 (lower is better)
Translates to: CSHISGLDKEMASLTQQVDPDVL*FSTELP
Trigger: TGGAAGCTCTGTGGAAAAGCACAGTACATCTGGGTC...AACTTGCTGAGTCAATGAAGCCATTTCTTTGTCTAGGCCGCTAATGTGGCTGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096418.5
CDS-3UTR CCA 90 bp CAGTGTACAGCTCTGGAAATATTAAGAACCCAAAACCTCAAACACAGCTCAGGAGCTCCACGGGCTCACTaGAAGAAGATCCTGAGAATG +
Preference number: 4 (lower is better)
Translates to: QCTALEILRTQNLKHSSGAPRAH*KKILRM
Trigger: CATTCTCAGGATCTTCTTCCAGTGAGCCCGTGGAGC...TCCTGAGCTGTGTTTGAGGTTTTGGGTTCTTAATATTTCCAGAGCTGTACACTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096418.5
CDS-3UTR CCA 90 bp CTTACATTGAGAAGAATGGGTATTATACCTGTCTTGAACCCTTCCCAAGAACACCTAGGCACATGGCCGTaGCATCGAAAGATGGCTTCC +
Preference number: 4 (lower is better)
Translates to: LTLRRMGIIPVLNPSQEHLGTWP*HRKMAS
Trigger: GGAAGCCATCTTTCGATGCCACGGCCATGTGCCTAG...GTGTTCTTGGGAAGGGTTCAAGACAGGTATAATACCCATTCTTCTCAATGTAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096418.5
CDS-3UTR GCA 90 bp GCAATTAGCCAGTGTACAGCTCTGGAAATATTAAGAACCCAAAACCTCAAACACAGCTGCAGCTGTAGTTaGCAGGCTTGTAGATTAAAA +
Preference number: 4 (lower is better)
Translates to: AISQCTALEILRTQNLKHSCSCS*QACRLK
Trigger: TTTTAATCTACAAGCCTGGCAACTACAGCTGCAGCT...GTGTTTGAGGTTTTGGGTTCTTAATATTTCCAGAGCTGTACACTGGCTAATTGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096418.5
CDS-3UTR TCA 90 bp ATTGAGAAGAATGGGTATTATACCTGTCTTGAACCCTTCCCAAGAACACTTTTTTCCAGAGTCTATTGTTaGGATATTGTGCAGCTCAAA +
Preference number: 4 (lower is better)
Translates to: IEKNGYYTCLEPFPRTLFSRVYC*DIVQLK
Trigger: TTTGAGCTGCACAATATCTCAACAATAGACTCTGGA...AAAAAGTGTTCTTGGGAAGGGTTCAAGACAGGTATAATACCCATTCTTCTCAAT
38% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 1 transcripts:
ENSMUST00000096418.5
CDS CCA 90 bp GACCCAGATGTACTGTGCTTTTCCACAGAGCTTCCAGCCTTGGCTTaGGTGGTGGCCCATTCACCCGCAGCTCCACGGGCTCACTGGAAG +
Preference number: 5 (lower is better)
Translates to: DPDVLCFSTELPALA*VVAHSPAAPRAHWK
Trigger: CTTCCAGTGAGCCCGTGGAGCTGCGGGTGAATGGGCCACCACCCAAGCCAAGGCTGGAAGCTCTGTGGAAAAGCACAGTACATCTGGGTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096418.5
CDS TCA 90 bp TATACAGGCAGGCCACCAGGTGTGATCCAGTCGACTGGATCAGCATaGGCCAAGGGCCGAGGCAAGGGCTCTTTCCCTGTCACCTCCACA +
Preference number: 5 (lower is better)
Translates to: YTGRPPGVIQSTGSA*AKGRGKGSFPVTST
Trigger: TGTGGAGGTGACAGGGAAAGAGCCCTTGCCTCGGCCCTTGGCTCATGCTGATCCAGTCGACTGGATCACACCTGGTGGCCTGCCTGTATA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096418.5
CDS GCA 90 bp GCCATCCACTCCTTCCTGCCTCAGCAGGTAGGTCACACCCCGCATTaGAACCTGGCACATCACGTATACAGGCAGGCCACCAGGTGTGAT +
Preference number: 5 (lower is better)
Translates to: AIHSFLPQQVGHTPH*NLAHHVYRQATRCD
Trigger: ATCACACCTGGTGGCCTGCCTGTATACGTGATGTGCCAGGTTGCAATGCGGGGTGTGACCTACCTGCTGAGGCAGGAAGGAGTGGATGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096418.5
CDS CCA 90 bp GCACATCACGTATACAGGCAGGCCACCAGGTGTGATCCAGTCGACTaGATCAGCATGAGCCAAGGGCCGAGGCAAGGGCTCTTTCCCTGT +
Preference number: 5 (lower is better)
Translates to: AHHVYRQATRCDPVD*ISMSQGPRQGLFPC
Trigger: ACAGGGAAAGAGCCCTTGCCTCGGCCCTTGGCTCATGCTGATCCAGTCGACTGGATCACACCTGGTGGCCTGCCTGTATACGTGATGTGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096418.5
CDS CCA 90 bp TTCCTGACCCAGATGTACTGTGCTTTTCCACAGAGCTTCCAGCCTTaGCTTGGGTGGTGGCCCATTCACCCGCAGCTCCACGGGCTCACT +
Preference number: 5 (lower is better)
Translates to: FLTQMYCAFPQSFQP*LGWWPIHPQLHGLT
Trigger: AGTGAGCCCGTGGAGCTGCGGGTGAATGGGCCACCACCCAAGCCAAGGCTGGAAGCTCTGTGGAAAAGCACAGTACATCTGGGTCAGGAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096418.5
CDS CCA 90 bp TTGGCTTGGGTGGTGGCCCATTCACCCGCAGCTCCACGGGCTCACTaGAAGAAGATCCTGAGAATGGCGGTGCCTGTTCCATGTAGATAC +
Preference number: 5 (lower is better)
Translates to: LAWVVAHSPAAPRAH*KKILRMAVPVPCRY
Trigger: GTATCTACATGGAACAGGCACCGCCATTCTCAGGATCTTCTTCCAGTGAGCCCGTGGAGCTGCGGGTGAATGGGCCACCACCCAAGCCAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096418.5
CDS CCA 90 bp ATGTACTGTGCTTTTCCACAGAGCTTCCAGCCTTGGCTTGGGTGGTaGCCCATTCACCCGCAGCTCCACGGGCTCACTGGAAGAAGATCC +
Preference number: 5 (lower is better)
Translates to: MYCAFPQSFQPWLGW*PIHPQLHGLTGRRS
Trigger: GGATCTTCTTCCAGTGAGCCCGTGGAGCTGCGGGTGAATGGGCCACCACCCAAGCCAAGGCTGGAAGCTCTGTGGAAAAGCACAGTACAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096418.5
CDS CCA 90 bp CAGATGTACTGTGCTTTTCCACAGAGCTTCCAGCCTTGGCTTGGGTaGTGGCCCATTCACCCGCAGCTCCACGGGCTCACTGGAAGAAGA +
Preference number: 5 (lower is better)
Translates to: QMYCAFPQSFQPWLG*WPIHPQLHGLTGRR
Trigger: TCTTCTTCCAGTGAGCCCGTGGAGCTGCGGGTGAATGGGCCACCACCCAAGCCAAGGCTGGAAGCTCTGTGGAAAAGCACAGTACATCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096418.5
CDS GCA 90 bp CATGGCCGTGGCATCGAAAGATGGCTTCCTGACCCAGATGTACTGTaGTTTTCCACAGAGCTTCCAGCCTTGGCTTGGGTGGTGGCCCAT +
Preference number: 5 (lower is better)
Translates to: HGRGIERWLPDPDVL*FSTELPALAWVVAH
Trigger: ATGGGCCACCACCCAAGCCAAGGCTGGAAGCTCTGTGGAAAAGCACAGTACATCTGGGTCAGGAAGCCATCTTTCGATGCCACGGCCATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096418.5
CDS TCA 90 bp ATGCTGACCCTAGGCACATGGCCGTGGCATCGAAAGATGGCTTCCTaGCCCAGATGTACTGTGCTTTTCCACAGAGCTTCCAGCCTTGGC +
Preference number: 5 (lower is better)
Translates to: MLTLGTWPWHRKMAS*PRCTVLFHRASSLG
Trigger: GCCAAGGCTGGAAGCTCTGTGGAAAAGCACAGTACATCTGGGTCAGGAAGCCATCTTTCGATGCCACGGCCATGTGCCTAGGGTCAGCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096418.5
CDS CCA 90 bp GAGGCAAGGGCTCTTTCCCTGTCACCTCCACAGCATTGCTTAGCATaGTCCACTTGTTCAGTGCTGGCAGGTGAATGTCAACAGGGGGTT +
Preference number: 5 (lower is better)
Translates to: EARALSLSPPQHCLA*STCSVLAGECQQGV
Trigger: AACCCCCTGTTGACATTCACCTGCCAGCACTGAACAAGTGGACCATGCTAAGCAATGCTGTGGAGGTGACAGGGAAAGAGCCCTTGCCTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000096418.5
CDS-3UTR CAA 90 bp TCATTGACTCAGCAAGTTGCCACAGGGCCTTTCCACACTGACCTTGGTGAAGCACCCTCCTTGCCTGAGTaGGAATTCAGCTGCATTCCG +
Preference number: 5 (lower is better)
Translates to: SLTQQVATGPFHTDLGEAPSLPE*EFSCIP
Trigger: CGGAATGCAGCTGAATTCCAACTCAGGCAAGGAGGG...TGCTTCACCAAGGTCAGTGTGGAAAGGCCCTGTGGCAACTTGCTGAGTCAATGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096418.5
CDS-3UTR CAA 90 bp TGCAGCCACATTAGCGGCCTAGACAAAGAAATGGCTTCATTGACTCAGCAAGTTGCTTCCAGCCTTGGCTaGGGTGGTGGCCCATTCACC +
Preference number: 5 (lower is better)
Translates to: CSHISGLDKEMASLTQQVASSLG*GGGPFT
Trigger: GGTGAATGGGCCACCACCCAAGCCAAGGCTGGAAGC...AACTTGCTGAGTCAATGAAGCCATTTCTTTGTCTAGGCCGCTAATGTGGCTGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096418.5
CDS GCA 90 bp CAGAGGGTTCACCTGCTGCATGGGTTAGGTAGCTGCAGCTGTAGTTaGCAGGCTTGTAGATTAAAAAGCCAGCTGTTCCCTTGTGCTGGA +
Preference number: 5 (lower is better)
Translates to: QRVHLLHGLGSCSCS*QACRLKSQLFPCAG
Trigger: TCCAGCACAAGGGAACAGCTGGCTTTTTAATCTACAAGCCTGGCAACTACAGCTGCAGCTACCTAACCCATGCAGCAGGTGAACCCTCTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000096418.5
CDS GCA 90 bp TTGTGCAGCTCAAAGACTGCTTCGGTCCCAGACGAATTCAGCATTTaGACCACAACTAATTCCGGTTTGCCCTGGCGTTGCAGGCCAAAG +
Preference number: 5 (lower is better)
Translates to: LCSSKTASVPDEFSI*TTTNSGLPWRCRPK
Trigger: CTTTGGCCTGCAACGCCAGGGCAAACCGGAATTAGTTGTGGTGCAAATGCTGAATTCGTCTGGGACCGAAGCAGTCTTTGAGCTGCACAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096418.5
CDS TCA 90 bp TTCCCATCAAACACAGAGTGGGTGGAGCCTGTGAGGCATACATCTTaGTGGTCACAATATCACTGGGCTCAGAGGGTTCACCTGCTGCAT +
Preference number: 5 (lower is better)
Translates to: FPSNTEWVEPVRHTS*WSQYHWAQRVHLLH
Trigger: ATGCAGCAGGTGAACCCTCTGAGCCCAGTGATATTGTGACCATCAAGATGTATGCCTCACAGGCTCCACCCACTCTGTGTTTGATGGGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096418.5
CDS-3UTR CAA 90 bp TTGACTCAGCAAGTTGCCACAGGGCCTTTCCACACTGACCTTGGTGAAGCAATTAAGCCAGCTGTTCCCTaGTGCTGGACATCAGGTTTC +
Preference number: 5 (lower is better)
Translates to: LTQQVATGPFHTDLGEAIKPAVP*CWTSGF
Trigger: GAAACCTGATGTCCAGCACAAGGGAACAGCTGGCTT...AATTGCTTCACCAAGGTCAGTGTGGAAAGGCCCTGTGGCAACTTGCTGAGTCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096418.5
CDS-3UTR CAA 90 bp CTTACATTGAGAAGAATGGGTATTATACCTGTCTTGAACCCTTCCCAAGAACACACACCAGGGTCAGGTTaGCCCAGGGTTCCAGCAGGG +
Preference number: 5 (lower is better)
Translates to: LTLRRMGIIPVLNPSQEHTPGSG*PRVPAG
Trigger: CCCTGCTGGAACCCTGGGCAAACCTGACCCTGGTGT...GTGTTCTTGGGAAGGGTTCAAGACAGGTATAATACCCATTCTTCTCAATGTAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096418.5
CDS TCA 90 bp CCTCTGACCAAACGTGCATGTATTTGTGCATCCGGTAGCGGCAGGTaGAAGGACCTGGGTTATCCAGTTCCTTCAAGTTCACATAGTACA +
Preference number: 5 (lower is better)
Translates to: PLTKRACICASGSGR*KDLGYPVPSSSHST
Trigger: TGTACTATGTGAACTTGAAGGAACTGGATAACCCAGGTCCTTTCACCTGCCGCTACCGGATGCACAAATACATGCACGTTTGGTCAGAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096418.5
CDS-3UTR CAA 90 bp CTTACATTGAGAAGAATGGGTATTATACCTGTCTTGAACCCTTCCCAAGAACACACAGAGCTTCCAGCCTaGGCTTGGGTGGTGGCCCAT +
Preference number: 5 (lower is better)
Translates to: LTLRRMGIIPVLNPSQEHTELPA*AWVVAH
Trigger: ATGGGCCACCACCCAAGCCAAGGCTGGAAGCTCTGT...GTGTTCTTGGGAAGGGTTCAAGACAGGTATAATACCCATTCTTCTCAATGTAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096418.5
CDS-3UTR CAA 90 bp CTTACATTGAGAAGAATGGGTATTATACCTGTCTTGAACCCTTCCCAAGAACACAGGTCACACCCCGCATaGCAACCTGGCACATCACGT +
Preference number: 5 (lower is better)
Translates to: LTLRRMGIIPVLNPSQEHRSHPA*QPGTSR
Trigger: ACGTGATGTGCCAGGTTGCAATGCGGGGTGTGACCT...GTGTTCTTGGGAAGGGTTCAAGACAGGTATAATACCCATTCTTCTCAATGTAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096418.5
CDS-3UTR CAA 90 bp GCAATTAGCCAGTGTACAGCTCTGGAAATATTAAGAACCCAAAACCTCAAACACGCATTCCGAGGAGCTTaGCAGGCAAGGGTCTCATAT +
Preference number: 5 (lower is better)
Translates to: AISQCTALEILRTQNLKHAFRGA*QARVSY
Trigger: ATATGAGACCCTTGCCTGCAAAGCTCCTCGGAATGC...GTGTTTGAGGTTTTGGGTTCTTAATATTTCCAGAGCTGTACACTGGCTAATTGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096418.5
CDS-3UTR CAA 90 bp ATTGAGAAGAATGGGTATTATACCTGTCTTGAACCCTTCCCAAGAACACTTTTTCAGCACCTTCCCTCCTaGCCTGAGTTGGAATTCAGC +
Preference number: 5 (lower is better)
Translates to: IEKNGYYTCLEPFPRTLFQHLPS*PELEFS
Trigger: GCTGAATTCCAACTCAGGCAAGGAGGGAAGGTGCTG...AAAAAGTGTTCTTGGGAAGGGTTCAAGACAGGTATAATACCCATTCTTCTCAAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000096418.5
CDS GCA 72 bp GGGCGGCAGGGCCGTATAGCGGCAGCTGTAGTTGCCTaGATGTTGGGGACCGACGAAGAGCAGCTTCAGGTA +
Preference number: 6 (lower is better)
Translates to: GRQGRIAAAVVA*MLGTDEEQLQV
Trigger: TACCTGAAGCTGCTCTTCGTCGGTCCCCAACATGCAGGCAACTACAGCTGCCGCTATACGGCCCTGCCGCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096418.5
CDS CCA 72 bp GCTTTTCCACAGAGCTTCCAGCCTTGGCTTGGGTGGTaGCCCATTCACCCGCAGCTCCACGGGCTCACTGGA +
Preference number: 6 (lower is better)
Translates to: AFPQSFQPWLGW*PIHPQLHGLTG
Trigger: TCCAGTGAGCCCGTGGAGCTGCGGGTGAATGGGCCACCACCCAAGCCAAGGCTGGAAGCTCTGTGGAAAAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096418.5
CDS TCA 72 bp AGGCCACCAGGTGTGATCCAGTCGACTGGATCAGCATaGGCCAAGGGCCGAGGCAAGGGCTCTTTCCCTGTC +
Preference number: 6 (lower is better)
Translates to: RPPGVIQSTGSA*AKGRGKGSFPV
Trigger: GACAGGGAAAGAGCCCTTGCCTCGGCCCTTGGCTCATGCTGATCCAGTCGACTGGATCACACCTGGTGGCCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096418.5
CDS CCA 72 bp TGTGCTTTTCCACAGAGCTTCCAGCCTTGGCTTGGGTaGTGGCCCATTCACCCGCAGCTCCACGGGCTCACT +
Preference number: 6 (lower is better)
Translates to: CAFPQSFQPWLG*WPIHPQLHGLT
Trigger: AGTGAGCCCGTGGAGCTGCGGGTGAATGGGCCACCACCCAAGCCAAGGCTGGAAGCTCTGTGGAAAAGCACA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096418.5
CDS CCA 72 bp GTACTGTGCTTTTCCACAGAGCTTCCAGCCTTGGCTTaGGTGGTGGCCCATTCACCCGCAGCTCCACGGGCT +
Preference number: 6 (lower is better)
Translates to: VLCFSTELPALA*VVAHSPAAPRA
Trigger: AGCCCGTGGAGCTGCGGGTGAATGGGCCACCACCCAAGCCAAGGCTGGAAGCTCTGTGGAAAAGCACAGTAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096418.5
CDS CAA 72 bp TGTACTGTGCTTTTCCACAGAGCTTCCAGCCTTGGCTaGGGTGGTGGCCCATTCACCCGCAGCTCCACGGGC +
Preference number: 6 (lower is better)
Translates to: CTVLFHRASSLG*GGGPFTRSSTG
Trigger: GCCCGTGGAGCTGCGGGTGAATGGGCCACCACCCAAGCCAAGGCTGGAAGCTCTGTGGAAAAGCACAGTACA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096418.5
CDS CAA 90 bp CTTCCTGACCCAGATGTACTGTGCTTTTCCACAGAGCTTCCAGCCTaGGCTTGGGTGGTGGCCCATTCACCCGCAGCTCCACGGGCTCAC +
Preference number: 6 (lower is better)
Translates to: LPDPDVLCFSTELPA*AWVVAHSPAAPRAH
Trigger: GTGAGCCCGTGGAGCTGCGGGTGAATGGGCCACCACCCAAGCCAAGGCTGGAAGCTCTGTGGAAAAGCACAGTACATCTGGGTCAGGAAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096418.5
CDS GCA 72 bp TCCTTCCTGCCTCAGCAGGTAGGTCACACCCCGCATTaGAACCTGGCACATCACGTATACAGGCAGGCCACC +
Preference number: 6 (lower is better)
Translates to: SFLPQQVGHTPH*NLAHHVYRQAT
Trigger: GGTGGCCTGCCTGTATACGTGATGTGCCAGGTTGCAATGCGGGGTGTGACCTACCTGCTGAGGCAGGAAGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096418.5
CDS CAA 72 bp CTCCTTCCTGCCTCAGCAGGTAGGTCACACCCCGCATaGCAACCTGGCACATCACGTATACAGGCAGGCCAC +
Preference number: 6 (lower is better)
Translates to: LLPASAGRSHPA*QPGTSRIQAGH
Trigger: GTGGCCTGCCTGTATACGTGATGTGCCAGGTTGCAATGCGGGGTGTGACCTACCTGCTGAGGCAGGAAGGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096418.5
CDS CCA 72 bp CAGATGTACTGTGCTTTTCCACAGAGCTTCCAGCCTTaGCTTGGGTGGTGGCCCATTCACCCGCAGCTCCAC +
Preference number: 6 (lower is better)
Translates to: QMYCAFPQSFQP*LGWWPIHPQLH
Trigger: GTGGAGCTGCGGGTGAATGGGCCACCACCCAAGCCAAGGCTGGAAGCTCTGTGGAAAAGCACAGTACATCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096418.5
CDS CAA 72 bp CCAGATGTACTGTGCTTTTCCACAGAGCTTCCAGCCTaGGCTTGGGTGGTGGCCCATTCACCCGCAGCTCCA +
Preference number: 6 (lower is better)
Translates to: PDVLCFSTELPA*AWVVAHSPAAP
Trigger: TGGAGCTGCGGGTGAATGGGCCACCACCCAAGCCAAGGCTGGAAGCTCTGTGGAAAAGCACAGTACATCTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096418.5
CDS TCA 72 bp CACCCGCAGCTCCACGGGCTCACTGGAAGAAGATCCTaGGAATGGCGGTGCCTGTTCCATGTAGATACAGCT +
Preference number: 6 (lower is better)
Translates to: HPQLHGLTGRRS*EWRCLFHVDTA
Trigger: AGCTGTATCTACATGGAACAGGCACCGCCATTCTCAGGATCTTCTTCCAGTGAGCCCGTGGAGCTGCGGGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096418.5
CDS GCA 72 bp ATTTGCACCACAACTAATTCCGGTTTGCCCTGGCGTTaGAGGCCAAAGCGCAGGCCGGATACGGGTGCAGTA +
Preference number: 6 (lower is better)
Translates to: ICTTTNSGLPWR*RPKRRPDTGAV
Trigger: TACTGCACCCGTATCCGGCCTGCGCTTTGGCCTGCAACGCCAGGGCAAACCGGAATTAGTTGTGGTGCAAAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096418.5
CDS CAA 72 bp CGAGGCAAGGGCTCTTTCCCTGTCACCTCCACAGCATaGCTTAGCATGGTCCACTTGTTCAGTGCTGGCAGG +
Preference number: 6 (lower is better)
Translates to: RGKGSFPVTSTA*LSMVHLFSAGR
Trigger: CCTGCCAGCACTGAACAAGTGGACCATGCTAAGCAATGCTGTGGAGGTGACAGGGAAAGAGCCCTTGCCTCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096418.5
CDS GCA 72 bp GAGGCAAGGGCTCTTTCCCTGTCACCTCCACAGCATTaGTTAGCATGGTCCACTTGTTCAGTGCTGGCAGGT +
Preference number: 6 (lower is better)
Translates to: EARALSLSPPQH*LAWSTCSVLAG
Trigger: ACCTGCCAGCACTGAACAAGTGGACCATGCTAAGCAATGCTGTGGAGGTGACAGGGAAAGAGCCCTTGCCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096418.5
CDS TCA 72 bp TTGCTTAGCATGGTCCACTTGTTCAGTGCTGGCAGGTaGATGTCAACAGGGGGTTCCACGCCACATCTGCAG +
Preference number: 6 (lower is better)
Translates to: LLSMVHLFSAGR*MSTGGSTPHLQ
Trigger: CTGCAGATGTGGCGTGGAACCCCCTGTTGACATTCACCTGCCAGCACTGAACAAGTGGACCATGCTAAGCAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000096418.5
CDS GCA 72 bp CAGCACCTTCCCTCCTTGCCTGAGTTGGAATTCAGCTaGATTCCGAGGAGCTTTGCAGGCAAGGGTCTCATA +
Preference number: 6 (lower is better)
Translates to: QHLPSLPELEFS*IPRSFAGKGLI
Trigger: TATGAGACCCTTGCCTGCAAAGCTCCTCGGAATGCAGCTGAATTCCAACTCAGGCAAGGAGGGAAGGTGCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096418.5
CDS GCA 72 bp GGCATCGAAAGATGGCTTCCTGACCCAGATGTACTGTaGTTTTCCACAGAGCTTCCAGCCTTGGCTTGGGTG +
Preference number: 6 (lower is better)
Translates to: GIERWLPDPDVL*FSTELPALAWV
Trigger: CACCCAAGCCAAGGCTGGAAGCTCTGTGGAAAAGCACAGTACATCTGGGTCAGGAAGCCATCTTTCGATGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096418.5
CDS CAA 90 bp GGGGCTAAACCCATGAATTTTCAGCACCTTCCCTCCTTGCCTGAGTaGGAATTCAGCTGCATTCCGAGGAGCTTTGCAGGCAAGGGTCTC +
Preference number: 6 (lower is better)
Translates to: GAKPMNFQHLPSLPE*EFSCIPRSFAGKGL
Trigger: GAGACCCTTGCCTGCAAAGCTCCTCGGAATGCAGCTGAATTCCAACTCAGGCAAGGAGGGAAGGTGCTGAAAATTCATGGGTTTAGCCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000096418.5
CDS CAA 72 bp CCCATGAATTTTCAGCACCTTCCCTCCTTGCCTGAGTaGGAATTCAGCTGCATTCCGAGGAGCTTTGCAGGC +
Preference number: 6 (lower is better)
Translates to: PMNFQHLPSLPE*EFSCIPRSFAG
Trigger: GCCTGCAAAGCTCCTCGGAATGCAGCTGAATTCCAACTCAGGCAAGGAGGGAAGGTGCTGAAAATTCATGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096418.5
CDS CAA 90 bp ATCTCTGGTGGGGCTAAACCCATGAATTTTCAGCACCTTCCCTCCTaGCCTGAGTTGGAATTCAGCTGCATTCCGAGGAGCTTTGCAGGC +
Preference number: 6 (lower is better)
Translates to: ISGGAKPMNFQHLPS*PELEFSCIPRSFAG
Trigger: GCCTGCAAAGCTCCTCGGAATGCAGCTGAATTCCAACTCAGGCAAGGAGGGAAGGTGCTGAAAATTCATGGGTTTAGCCCCACCAGAGAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000096418.5
CDS TCA 72 bp AACACAGAGTGGGTGGAGCCTGTGAGGCATACATCTTaGTGGTCACAATATCACTGGGCTCAGAGGGTTCAC +
Preference number: 6 (lower is better)
Translates to: NTEWVEPVRHTS*WSQYHWAQRVH
Trigger: GTGAACCCTCTGAGCCCAGTGATATTGTGACCATCAAGATGTATGCCTCACAGGCTCCACCCACTCTGTGTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096418.5
CDS CCA 72 bp GCTCTTTCCCTGTCACCTCCACAGCATTGCTTAGCATaGTCCACTTGTTCAGTGCTGGCAGGTGAATGTCAA +
Preference number: 6 (lower is better)
Translates to: ALSLSPPQHCLA*STCSVLAGECQ
Trigger: TTGACATTCACCTGCCAGCACTGAACAAGTGGACCATGCTAAGCAATGCTGTGGAGGTGACAGGGAAAGAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096418.5
CDS CAA 72 bp AAACACAGAGTGGGTGGAGCCTGTGAGGCATACATCTaGATGGTCACAATATCACTGGGCTCAGAGGGTTCA +
Preference number: 6 (lower is better)
Translates to: KHRVGGACEAYI*MVTISLGSEGS
Trigger: TGAACCCTCTGAGCCCAGTGATATTGTGACCATCAAGATGTATGCCTCACAGGCTCCACCCACTCTGTGTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096418.5
CDS TCA 72 bp GTAGTTTCCCATCAAACACAGAGTGGGTGGAGCCTGTaGGGCATACATCTTGATGGTCACAATATCACTGGG +
Preference number: 6 (lower is better)
Translates to: VVSHQTQSGWSL*GIHLDGHNITG
Trigger: CCCAGTGATATTGTGACCATCAAGATGTATGCCTCACAGGCTCCACCCACTCTGTGTTTGATGGGAAACTAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096418.5
CDS TCA 72 bp AAACGTGCATGTATTTGTGCATCCGGTAGCGGCAGGTaGAAGGACCTGGGTTATCCAGTTCCTTCAAGTTCA +
Preference number: 6 (lower is better)
Translates to: KRACICASGSGR*KDLGYPVPSSS
Trigger: TGAACTTGAAGGAACTGGATAACCCAGGTCCTTTCACCTGCCGCTACCGGATGCACAAATACATGCACGTTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096418.5
ENSMUST00000228632.2
CDS CCA 72 bp GTATTTGTGCATCCGGTAGCGGCAGGTGAAAGGACCTaGGTTATCCAGTTCCTTCAAGTTCACATAGTACAG +
Preference number: 6 (lower is better)
Translates to: VFVHPVAAGERT*VIQFLQVHIVQ
Trigger: CTGTACTATGTGAACTTGAAGGAACTGGATAACCCAGGTCCTTTCACCTGCCGCTACCGGATGCACAAATAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096418.5
ENSMUST00000228632.2