Pregenerated sensors for COX8C (Homo sapiens)
Ensembl gene IDs: ENSG00000187581Ensembl transcript IDs: ENST00000342144.3, ENST00000620478.2
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | CACAATGGTTGCATCAACTCAACTAGGCAATTTTGCTCGTTAACAAAAACACAGGCATATCGCGTCAGGTaGGACAAAGCCAGGCGTGGA | + |
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Preference number: 4 (lower is better) Translates to: HNGCINSTRQFCSLTKTQAYRVR*DKARRG Trigger: TCCACGCCTGGCTTTGTCTCACCTGACGCGATATGC...CTGTGTTTTTGTTAACGAGCAAAATTGCCTAGTTGAGTTGATGCAACCATTGTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000342144.3 ENST00000620478.2 |
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| CDS-3UTR TCA 90 bp | CACAATGGTTGCATCAACTCAACTAGGCAATTTTGCTCGTTAACAAAAACACAGACAGCACAGGTGAGGTaGGGCCAAGTAACGCAAGCT | + |
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Preference number: 4 (lower is better) Translates to: HNGCINSTRQFCSLTKTQTAQVR*GQVTQA Trigger: AGCTTGCGTTACTTGGCCTCACCTCACCTGTGCTGT...CTGTGTTTTTGTTAACGAGCAAAATTGCCTAGTTGAGTTGATGCAACCATTGTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000342144.3 ENST00000620478.2 |
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| CDS-3UTR TCA 90 bp | GAATACCACAATGGTTGCATCAACTCAACTAGGCAATTTTGCTCGTTAACAAAAGCATATCGCGTCAGGTaGGACAAAGCCAGGCGTGGA | + |
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Preference number: 4 (lower is better) Translates to: EYHNGCINSTRQFCSLTKAYRVR*DKARRG Trigger: TCCACGCCTGGCTTTGTCTCACCTGACGCGATATGC...TTTTGTTAACGAGCAAAATTGCCTAGTTGAGTTGATGCAACCATTGTGGTATTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000342144.3 ENST00000620478.2 |
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| CDS-3UTR TCA 90 bp | AATGGTTGCATCAACTCAACTAGGCAATTTTGCTCGTTAACAAAAACACAGCTTACAGCACAGGTGAGGTaGGGCCAAGTAACGCAAGCT | + |
|
Preference number: 4 (lower is better) Translates to: NGCINSTRQFCSLTKTQLTAQVR*GQVTQA Trigger: AGCTTGCGTTACTTGGCCTCACCTCACCTGTGCTGT...AAGCTGTGTTTTTGTTAACGAGCAAAATTGCCTAGTTGAGTTGATGCAACCATT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000342144.3 ENST00000620478.2 |
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| CDS-3UTR TCA 90 bp | GAATACCACAATGGTTGCATCAACTCAACTAGGCAATTTTGCTCGTTAACAAAACCATCTAATTCCTTCTaGACTGCTTCAGGTTGCCTA | + |
|
Preference number: 4 (lower is better) Translates to: EYHNGCINSTRQFCSLTKPSNSF*TASGCL Trigger: TAGGCAACCTGAAGCAGTTCAGAAGGAATTAGATGG...TTTTGTTAACGAGCAAAATTGCCTAGTTGAGTTGATGCAACCATTGTGGTATTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000342144.3 ENST00000620478.2 |
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| CDS-3UTR GCA 90 bp | CACAATGGTTGCATCAACTCAACTAGGCAATTTTGCTCGTTAACAAAAACACAGGAATACCACAATGGTTaGATCAACTCAACTAGGCAA | + |
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Preference number: 4 (lower is better) Translates to: HNGCINSTRQFCSLTKTQEYHNG*INSTRQ Trigger: TTGCCTAGTTGAGTTGATGCAACCATTGTGGTATTC...CTGTGTTTTTGTTAACGAGCAAAATTGCCTAGTTGAGTTGATGCAACCATTGTG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000342144.3 ENST00000620478.2 |
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| CDS-3UTR GCA 90 bp | GAATACCACAATGGTTGCATCAACTCAACTAGGCAATTTTGCTCGTTAACAAAAGAATACCACAATGGTTaGATCAACTCAACTAGGCAA | + |
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Preference number: 4 (lower is better) Translates to: EYHNGCINSTRQFCSLTKEYHNG*INSTRQ Trigger: TTGCCTAGTTGAGTTGATGCAACCATTGTGGTATTC...TTTTGTTAACGAGCAAAATTGCCTAGTTGAGTTGATGCAACCATTGTGGTATTC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000342144.3 ENST00000620478.2 |
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| CDS-3UTR GCA 90 bp | CACAATGGTTGCATCAACTCAACTAGGCAATTTTGCTCGTTAACAAAAACACAGTCAACTAGGCAATTTTaGTCGTTAACAAAAACACAG | + |
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Preference number: 4 (lower is better) Translates to: HNGCINSTRQFCSLTKTQSTRQF*SLTKTQ Trigger: CTGTGTTTTTGTTAACGAGCAAAATTGCCTAGTTGA...CTGTGTTTTTGTTAACGAGCAAAATTGCCTAGTTGAGTTGATGCAACCATTGTG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 2 transcripts: ENST00000342144.3 ENST00000620478.2 |
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| CDS-3UTR GCA 90 bp | GAATACCACAATGGTTGCATCAACTCAACTAGGCAATTTTGCTCGTTAACAAAATCAACTAGGCAATTTTaGTCGTTAACAAAAACACAG | + |
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Preference number: 4 (lower is better) Translates to: EYHNGCINSTRQFCSLTKSTRQF*SLTKTQ Trigger: CTGTGTTTTTGTTAACGAGCAAAATTGCCTAGTTGA...TTTTGTTAACGAGCAAAATTGCCTAGTTGAGTTGATGCAACCATTGTGGTATTC 36% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENST00000342144.3 ENST00000620478.2 |
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| CDS-3UTR CAA 90 bp | GAATACCACAATGGTTGCATCAACTCAACTAGGCAATTTTGCTCGTTAACAAAACTGAACTGCTTCAGGTaGCCTAGCACATATGCAGCT | + |
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Preference number: 5 (lower is better) Translates to: EYHNGCINSTRQFCSLTKLNCFR*PSTYAA Trigger: AGCTGCATATGTGCTAGGCAACCTGAAGCAGTTCAG...TTTTGTTAACGAGCAAAATTGCCTAGTTGAGTTGATGCAACCATTGTGGTATTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000342144.3 ENST00000620478.2 |
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| CDS-3UTR CAA 90 bp | AATGGTTGCATCAACTCAACTAGGCAATTTTGCTCGTTAACAAAAACACAGCTTCTGAACTGCTTCAGGTaGCCTAGCACATATGCAGCT | + |
|
Preference number: 5 (lower is better) Translates to: NGCINSTRQFCSLTKTQLLNCFR*PSTYAA Trigger: AGCTGCATATGTGCTAGGCAACCTGAAGCAGTTCAG...AAGCTGTGTTTTTGTTAACGAGCAAAATTGCCTAGTTGAGTTGATGCAACCATT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000342144.3 ENST00000620478.2 |
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| CDS TCA 72 bp | ACAGCTGTTCAACATCATCTTCCATCTAATTCCTTCTaGACTGCTTCAGGTTGCCTAGCACATATGCAGCTG | + |
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Preference number: 6 (lower is better) Translates to: TAVQHHLPSNSF*TASGCLAHMQL Trigger: CAGCTGCATATGTGCTAGGCAACCTGAAGCAGTTCAGAAGGAATTAGATGGAAGATGATGTTGAACAGCTGT 44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000342144.3 ENST00000620478.2 |
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