Pregenerated sensors for COX6A1 (Homo sapiens)
Ensembl gene IDs: ENSG00000111775Ensembl transcript IDs: ENST00000549525.1, ENST00000550009.1
Found 5 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | AGGATAAACAAGCTGTACACGCCTGGCACCCATGCCTTCAGAGAATaGAGAACTTGCACTAAGGCACACATAACGAAAAGAGAACGGACG | + |
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Preference number: 5 (lower is better) Translates to: RINKLYTPGTHAFRE*RTCTKAHITKRERT Trigger: CGTCCGTTCTCTTTTCGTTATGTGTGCCTTAGTGCAAGTTCTTCATTCTCTGAAGGCATGGGTGCCAGGCGTGTACAGCTTGTTTATCCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000550009.1 |
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| CDS CCA 90 bp | ATGCAGATTTCTGGCACCATCCCAGACTTCAAACAATATCTGGGCTaGGAAACTGCAGCCCACCCTGAATTATCTTGCCTATTACCTTTG | + |
|
Preference number: 5 (lower is better) Translates to: MQISGTIPDFKQYLG*ETAAHPELSCLLPL Trigger: CAAAGGTAATAGGCAAGATAATTCAGGGTGGGCTGCAGTTTCCCAGCCCAGATATTGTTTGAAGTCTGGGATGGTGCCAGAAATCTGCAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000549525.1 |
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| CDS TCA 90 bp | AGGGAAACTGAAGAGCACTTATTGTATGACCTTGAAGAAGAGAATTaGGACGTAATCCCAAGTGTCAGCTGTCCATCCACAAAATGGAAG | + |
|
Preference number: 5 (lower is better) Translates to: RETEEHLLYDLEEEN*DVIPSVSCPSTKWK Trigger: CTTCCATTTTGTGGATGGACAGCTGACACTTGGGATTACGTCTCAATTCTCTTCTTCAAGGTCATACAATAAGTGCTCTTCAGTTTCCCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000550009.1 |
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| CDS TCA 72 bp | AAGCTGTACACGCCTGGCACCCATGCCTTCAGAGAATaGAGAACTTGCACTAAGGCACACATAACGAAAAGA | + |
|
Preference number: 6 (lower is better) Translates to: KLYTPGTHAFRE*RTCTKAHITKR Trigger: TCTTTTCGTTATGTGTGCCTTAGTGCAAGTTCTTCATTCTCTGAAGGCATGGGTGCCAGGCGTGTACAGCTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000550009.1 |
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| CDS GCA 72 bp | GGTGGCAGTATTAGGGGAGGGAGATGCTTAATTAAATaGAGATTTCTGGCACCATCCCAGACTTCAAACAAT | + |
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Preference number: 6 (lower is better) Translates to: GGSIRGGRCLIK*RFLAPSQTSNN Trigger: ATTGTTTGAAGTCTGGGATGGTGCCAGAAATCTGCATTTAATTAAGCATCTCCCTCCCCTAATACTGCCACC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000549525.1 |
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