Pregenerated sensors for COX5B (Homo sapiens)
Ensembl gene IDs: ENSG00000135940Ensembl transcript IDs: ENST00000258424.3, ENST00000491989.1
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | ACTGGTTATACACTTTCAGTAAGTGGATGGCAAGCTAGCATTAACAGACAGCTTAATAAGCATATTCCATaGCTACCAAAGAATACGGGT | + |
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Preference number: 2 (lower is better) Translates to: TGYTLSVSGWQASINRQLNKHIP*LPKNTG Trigger: ACCCGTATTCTTTGGTAGGCATGGAATATGCTTATT...AAGCTGTCTGTTAATGCTAGCTTGCCATCCACTTACTGAAAGTGTATAACCAGT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000258424.3 |
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| 3UTR-3UTR CCA 90 bp | GGTGGTCCCATTCATTGCATTACGGGTTGTCGATCTATTCTTATTATTAATCTACTTTCAGTAAGTGGATaGCAAGCTAGCATTAACAGA | + |
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Preference number: 2 (lower is better) Translates to: GGPIHCITGCRSILIINLLSVSG*QASINR Trigger: TCTGTTAATGCTAGCTTGCCATCCACTTACTGAAAG...TAGATTAATAATAAGAATAGATCGACAACCCGTAATGCAATGAATGGGACCACC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000258424.3 |
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| 3UTR CCA 72 bp | GCACTATACACTGGTTATACACTTTCAGTAAGTGGATaGCAAGCTAGCATTAACAGACAGCTTTTCCCAAAA | + |
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Preference number: 3 (lower is better) Translates to: ALYTGYTLSVSG*QASINRQLFPK Trigger: TTTTGGGAAAAGCTGTCTGTTAATGCTAGCTTGCCATCCACTTACTGAAAGTGTATAACCAGTGTATAGTGC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000258424.3 |
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| CDS-3UTR GCA 90 bp | GGTGGTCCCATTCATTGCATTACGGGTTGTCGATCTATTCTTATTATTAATCTATCCAACCCAGTCGCCTaGTCTTCATCAGTGGGAACA | + |
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Preference number: 4 (lower is better) Translates to: GGPIHCITGCRSILIINLSNPVA*SSSVGT Trigger: TGTTCCCACTGATGAAGAGCAGGCGACTGGGTTGGA...TAGATTAATAATAAGAATAGATCGACAACCCGTAATGCAATGAATGGGACCACC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000258424.3 |
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| CDS-3UTR GCA 90 bp | ACTGGTTATACACTTTCAGTAAGTGGATGGCAAGCTAGCATTAACAGACAGCTTGGTGGTCCCATTCATTaGATTACGGGTTGTCGATCT | + |
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Preference number: 4 (lower is better) Translates to: TGYTLSVSGWQASINRQLGGPIH*ITGCRS Trigger: AGATCGACAACCCGTAATGCAATGAATGGGACCACC...AAGCTGTCTGTTAATGCTAGCTTGCCATCCACTTACTGAAAGTGTATAACCAGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000258424.3 |
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| CDS-3UTR CCA 90 bp | CCAGGTGGTCCCATTCATTGCATTACGGGTTGTCGATCTATTCTTATTATTAATGGCCAGTACATTGTATaGGTCCAGTCCCTTCTTTGC | + |
|
Preference number: 4 (lower is better) Translates to: PGGPIHCITGCRSILIINGQYIV*VQSLLC Trigger: GCAAAGAAGGGACTGGACCCATACAATGTACTGGCC...ATTAATAATAAGAATAGATCGACAACCCGTAATGCAATGAATGGGACCACCTGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000258424.3 |
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| CDS-3UTR CCA 90 bp | GGTGGTCCCATTCATTGCATTACGGGTTGTCGATCTATTCTTATTATTAATCTAAAAACCAGACGACGCTaGTATTGTCCTCTTCACAGA | + |
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Preference number: 4 (lower is better) Translates to: GGPIHCITGCRSILIINLKTRRR*YCPLHR Trigger: TCTGTGAAGAGGACAATACCAGCGTCGTCTGGTTTT...TAGATTAATAATAAGAATAGATCGACAACCCGTAATGCAATGAATGGGACCACC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000258424.3 |
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| CDS-3UTR CCA 90 bp | CAGGTGGTCCCATTCATTGCATTACGGGTTGTCGATCTATTCTTATTATTAATCCTTTCAGTAAGTGGATaGCAAGCTAGCATTAACAGA | + |
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Preference number: 4 (lower is better) Translates to: QVVPFIALRVVDLFLLLILSVSG*QASINR Trigger: TCTGTTAATGCTAGCTTGCCATCCACTTACTGAAAG...GATTAATAATAAGAATAGATCGACAACCCGTAATGCAATGAATGGGACCACCTG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000258424.3 |
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| CDS-3UTR CAA 90 bp | GGTGGTCCCATTCATTGCATTACGGGTTGTCGATCTATTCTTATTATTAATCTACTCCGCGAAGTAACCTaGAAGCCATTGCGTCCGCGA | + |
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Preference number: 5 (lower is better) Translates to: GGPIHCITGCRSILIINLLREVT*KPLRPR Trigger: TCGCGGACGCAATGGCTTCAAGGTTACTTCGCGGAG...TAGATTAATAATAAGAATAGATCGACAACCCGTAATGCAATGAATGGGACCACC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000258424.3 |
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| CDS-3UTR CAA 90 bp | CCAGGTGGTCCCATTCATTGCATTACGGGTTGTCGATCTATTCTTATTATTAATCAGACGACGCTGGTATaGTCCTCTTCACAGATGCAG | + |
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Preference number: 5 (lower is better) Translates to: PGGPIHCITGCRSILIINQTTLV*SSSQMQ Trigger: CTGCATCTGTGAAGAGGACAATACCAGCGTCGTCTG...ATTAATAATAAGAATAGATCGACAACCCGTAATGCAATGAATGGGACCACCTGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000258424.3 |
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| CDS-3UTR CAA 90 bp | CCAGGTGGTCCCATTCATTGCATTACGGGTTGTCGATCTATTCTTATTATTAATAGGTGGTCCCATTCATaGCATTACGGGTTGTCGATC | + |
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Preference number: 5 (lower is better) Translates to: PGGPIHCITGCRSILIINRWSHS*HYGLSI Trigger: GATCGACAACCCGTAATGCAATGAATGGGACCACCT...ATTAATAATAAGAATAGATCGACAACCCGTAATGCAATGAATGGGACCACCTGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000258424.3 |
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| CDS TCA 72 bp | GAGGCAAATTTGTCGACATTTGTTTTCGCAGCGGAGTaGGTTCGGGGAGCGGCAGGAGCAGCGGTCCAGAAT | + |
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Preference number: 6 (lower is better) Translates to: EANLSTFVFAAE*VRGAAGAAVQN Trigger: ATTCTGGACCGCTGCTCCTGCCGCTCCCCGAACTCACTCCGCTGCGAAAACAAATGTCGACAAATTTGCCTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000491989.1 |
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