Pregenerated sensors for COX5A (Homo sapiens)
Ensembl gene IDs: ENSG00000178741Ensembl transcript IDs: ENST00000322347.11, ENST00000564811.1
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | GGGGCACTAAGAGAGGAACACACCGTAAGAGGGCTTGGCTACTGCATAGCACATGAAAGGTACACAATTTaGTCTATCCCCACAGACAAC | + |
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Preference number: 2 (lower is better) Translates to: GALREEHTVRGLGYCIAHERYTI*SIPTDN Trigger: GTTGTCTGTGGGGATAGATCAAATTGTGTACCTTTC...ATGTGCTATGCAGTAGCCAAGCCCTCTTACGGTGTGTTCCTCTCTTAGTGCCCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000322347.11 |
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| 3UTR CCA 72 bp | AGGGGCACTAAGAGAGGAACACACCGTAAGAGGGCTTaGCTACTGCATAGCACATCCTCAAGACTATCTCAG | + |
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Preference number: 3 (lower is better) Translates to: RGTKRGTHRKRA*LLHSTSSRLSQ Trigger: CTGAGATAGTCTTGAGGATGTGCTATGCAGTAGCCAAGCCCTCTTACGGTGTGTTCCTCTCTTAGTGCCCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000322347.11 |
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| 3UTR-3UTR CAA 90 bp | GGGGCACTAAGAGAGGAACACACCGTAAGAGGGCTTGGCTACTGCATAGCACATGGAAAGGTACACAATTaGATCTATCCCCACAGACAA | + |
|
Preference number: 3 (lower is better) Translates to: GALREEHTVRGLGYCIAHGKVHN*IYPHRQ Trigger: TTGTCTGTGGGGATAGATCAAATTGTGTACCTTTCC...ATGTGCTATGCAGTAGCCAAGCCCTCTTACGGTGTGTTCCTCTCTTAGTGCCCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000322347.11 |
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| CDS-3UTR CCA 90 bp | GTAAGAGGGCTTGGCTACTGCATAGCACATCCTCAAGACTATCTCAGTGACCACCACCGTAAGAGGGCTTaGCTACTGCATAGCACATCC | + |
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Preference number: 4 (lower is better) Translates to: VRGLGYCIAHPQDYLSDHHRKRA*LLHSTS Trigger: GGATGTGCTATGCAGTAGCCAAGCCCTCTTACGGTG...GTGGTCACTGAGATAGTCTTGAGGATGTGCTATGCAGTAGCCAAGCCCTCTTAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000322347.11 |
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| CDS-3UTR GCA 90 bp | GGAACACACCGTAAGAGGGCTTGGCTACTGCATAGCACATCCTCAAGACTATCTAGAGGGCTTGGCTACTaGATAGCACATCCTCAAGAC | + |
|
Preference number: 4 (lower is better) Translates to: GTHRKRAWLLHSTSSRLSRGLGY*IAHPQD Trigger: GTCTTGAGGATGTGCTATGCAGTAGCCAAGCCCTCT...AGATAGTCTTGAGGATGTGCTATGCAGTAGCCAAGCCCTCTTACGGTGTGTTCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000322347.11 |
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| CDS-3UTR CCA 90 bp | CACACCTCTCTGGATTGTTTTCCTGCCTTCTTCAGTGGTTTGTCGCTTACCCATTCCTGCCTTCTTCAGTaGTTTGTCGCTTACCCATGC | + |
|
Preference number: 4 (lower is better) Translates to: HTSLDCFPAFFSGLSLTHSCLLQ*FVAYPC Trigger: GCATGGGTAAGCGACAAACCACTGAAGAAGGCAGGA...ATGGGTAAGCGACAAACCACTGAAGAAGGCAGGAAAACAATCCAGAGAGGTGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000564811.1 |
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| CDS-3UTR TCA 90 bp | CTAAGAGAGGAACACACCGTAAGAGGGCTTGGCTACTGCATAGCACATCCTCAAGAAAGGTACACAATTTaGTCTATCCCCACAGACAAC | + |
|
Preference number: 4 (lower is better) Translates to: LREEHTVRGLGYCIAHPQERYTI*SIPTDN Trigger: GTTGTCTGTGGGGATAGATCAAATTGTGTACCTTTC...TTGAGGATGTGCTATGCAGTAGCCAAGCCCTCTTACGGTGTGTTCCTCTCTTAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000322347.11 |
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| CDS-3UTR GCA 90 bp | TTCATGTCAGATGGTTTCCAGAGAATTAACACAGTTCTCTCAGCATGTAAGAGGAGGCTAATACACCACTaGAAGGGAAGAACAGGTAGG | + |
|
Preference number: 4 (lower is better) Translates to: FMSDGFQRINTVLSACKRRLIHH*KGRTGR Trigger: CCTACCTGTTCTTCCCTTGCAGTGGTGTATTAGCCT...CCTCTTACATGCTGAGAGAACTGTGTTAATTCTCTGGAAACCATCTGACATGAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000322347.11 |
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| CDS-3UTR CAA 90 bp | CCCACACCTCTCTGGATTGTTTTCCTGCCTTCTTCAGTGGTTTGTCGCTTACCCCCACACCTCTCTGGATaGTTTTCCTGCCTTCTTCAG | + |
|
Preference number: 5 (lower is better) Translates to: PTPLWIVFLPSSVVCRLPPHLSG*FSCLLQ Trigger: CTGAAGAAGGCAGGAAAACAATCCAGAGAGGTGTGG...GGGTAAGCGACAAACCACTGAAGAAGGCAGGAAAACAATCCAGAGAGGTGTGGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000564811.1 |
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| CDS-3UTR CAA 90 bp | CACACCTCTCTGGATTGTTTTCCTGCCTTCTTCAGTGGTTTGTCGCTTACCCATGCCTTCTTCAGTGGTTaGTCGCTTACCCATGCGGTT | + |
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Preference number: 5 (lower is better) Translates to: HTSLDCFPAFFSGLSLTHAFFSG*SLTHAV Trigger: AACCGCATGGGTAAGCGACAAACCACTGAAGAAGGC...ATGGGTAAGCGACAAACCACTGAAGAAGGCAGGAAAACAATCCAGAGAGGTGTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000564811.1 |
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| CDS-3UTR CAA 90 bp | CTAAGAGAGGAACACACCGTAAGAGGGCTTGGCTACTGCATAGCACATCCTCAAGGAAAGGTACACAATTaGATCTATCCCCACAGACAA | + |
|
Preference number: 5 (lower is better) Translates to: LREEHTVRGLGYCIAHPQGKVHN*IYPHRQ Trigger: TTGTCTGTGGGGATAGATCAAATTGTGTACCTTTCC...TTGAGGATGTGCTATGCAGTAGCCAAGCCCTCTTACGGTGTGTTCCTCTCTTAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000322347.11 |
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| CDS CCA 72 bp | CCACACCTCTCTGGATTGTTTTCCTGCCTTCTTCAGTaGTTTGTCGCTTACCCATGCGGTTTACACTTTGTC | + |
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Preference number: 6 (lower is better) Translates to: PHLSGLFSCLLQ*FVAYPCGLHFV Trigger: GACAAAGTGTAAACCGCATGGGTAAGCGACAAACCACTGAAGAAGGCAGGAAAACAATCCAGAGAGGTGTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000564811.1 |
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