Pregenerated sensors for COX17 (Homo sapiens)
Ensembl gene IDs: ENSG00000138495Ensembl transcript IDs: ENST00000468918.5, ENST00000490145.1, ENST00000497116.1
Found 42 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AAACTCCTCAGGGAGGGTGTCCTCACGCAGGCGGTATACCAGGTGTaGCAGCTGGAGCAGGCAGACCACAGCCAGCAGGAAGCTCCAAAG | + |
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Preference number: 1 (lower is better) Translates to: KLLREGVLTQAVYQV*QLEQADHSQQEAPK Trigger: CTTTGGAGCTTCCTGCTGGCTGTGGTCTGCCTGCTCCAGCTGGCACACCTGGTATACCGCCTGCGTGAGGACACCCTCCCTGAGGAGTTT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000468918.5 |
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| 3UTR CCA 90 bp | TCAGGGAGGGTGTCCTCACGCAGGCGGTATACCAGGTGTGCCAGCTaGAGCAGGCAGACCACAGCCAGCAGGAAGCTCCAAAGAACAATG | + |
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Preference number: 1 (lower is better) Translates to: SGRVSSRRRYTRCAS*SRQTTASRKLQRTM Trigger: CATTGTTCTTTGGAGCTTCCTGCTGGCTGTGGTCTGCCTGCTCCAGCTGGCACACCTGGTATACCGCCTGCGTGAGGACACCCTCCCTGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000468918.5 |
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| 3UTR CCA 90 bp | GCCCCACAGCACGCAGCACAGGTAACCTCGCAGGTTACCAGCTATTaGATCAGGGTGATTTCCTTATCCTCTCCAAGCACCTATACTCAC | + |
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Preference number: 1 (lower is better) Translates to: APQHAAQVTSQVTSY*IRVISLSSPSTYTH Trigger: GTGAGTATAGGTGCTTGGAGAGGATAAGGAAATCACCCTGATCCAATAGCTGGTAACCTGCGAGGTTACCTGTGCTGCGTGCTGTGGGGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000468918.5 |
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| 3UTR-3UTR TCA 90 bp | GTATGGAAAGATGTAGTGCAGAAACTGCCCATCCTGGCTCACACGAACCCGGCCGCAGGGACAGGCGGTTaGTGGGTGTCTCACCCTCCA | + |
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Preference number: 2 (lower is better) Translates to: VWKDVVQKLPILAHTNPAAGTGG*WVSHPP Trigger: TGGAGGGTGAGACACCCATCAACCGCCTGTCCCTGC...GGCCGGGTTCGTGTGAGCCAGGATGGGCAGTTTCTGCACTACATCTTTCCATAC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000490145.1 |
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| 3UTR CAA 90 bp | AGCCCCACAGCACGCAGCACAGGTAACCTCGCAGGTTACCAGCTATaGGATCAGGGTGATTTCCTTATCCTCTCCAAGCACCTATACTCA | + |
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Preference number: 2 (lower is better) Translates to: SPTARSTGNLAGYQL*DQGDFLILSKHLYS Trigger: TGAGTATAGGTGCTTGGAGAGGATAAGGAAATCACCCTGATCCAATAGCTGGTAACCTGCGAGGTTACCTGTGCTGCGTGCTGTGGGGCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000468918.5 |
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| 3UTR-3UTR TCA 90 bp | CAGCAGGAAGCTCCAAAGAACAATGTCCAGGCCACAGGCACTGAACCAGCCCCAGCTATTGGATCAGGGTaGTTTCCTTATCCTCTCCAA | + |
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Preference number: 2 (lower is better) Translates to: QQEAPKNNVQATGTEPAPAIGSG*FPYPLQ Trigger: TTGGAGAGGATAAGGAAATCACCCTGATCCAATAGC...TGGGGCTGGTTCAGTGCCTGTGGCCTGGACATTGTTCTTTGGAGCTTCCTGCTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000468918.5 |
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| 3UTR-3UTR TCA 90 bp | CATGAACTGGTATGGAAAGATGTAGTGCAGAAACTGCCCATCCTGGCTCACACGTGCTCCTCGCAGCAGTaGACAATCTCCTTGTATGTC | + |
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Preference number: 2 (lower is better) Translates to: HELVWKDVVQKLPILAHTCSSQQ*TISLYV Trigger: GACATACAAGGAGATTGTTCACTGCTGCGAGGAGCA...CGTGTGAGCCAGGATGGGCAGTTTCTGCACTACATCTTTCCATACCAGTTCATG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000490145.1 |
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| 3UTR-3UTR CCA 90 bp | ATACTTCCGTGGGATACCCACTCCCTACTTAAAAGCATTTCTTGGCCAGGCATAGCAATGAGCTGTGATTaGGCCACTTCACCCCAGCCT | + |
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Preference number: 2 (lower is better) Translates to: ILPWDTHSLLKSISWPGIAMSCD*ATSPQP Trigger: AGGCTGGGGTGAAGTGGCCCAATCACAGCTCATTGC...TATGCCTGGCCAAGAAATGCTTTTAAGTAGGGAGTGGGTATCCCACGGAAGTAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000497116.1 |
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| 3UTR-3UTR TCA 90 bp | TCCATTTTCATTTTTCAGAAAGCAATACTTCCGTGGGATACCCACTCCCTACTTCTGAGTCCAAGAGGTTaGGACCAGCCTGGGCAAGAT | + |
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Preference number: 2 (lower is better) Translates to: SIFIFQKAILPWDTHSLLLSPRG*DQPGQD Trigger: ATCTTGCCCAGGCTGGTCTCAACCTCTTGGACTCAG...AAGTAGGGAGTGGGTATCCCACGGAAGTATTGCTTTCTGAAAAATGAAAATGGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000497116.1 |
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| 3UTR-3UTR TCA 90 bp | CCAGAGTTAAGACCTGCTCCTCGCAGCAGTGAACAATCTCCTTGTATGTCTGTACTTCTCCTTTCTCGATaGTACACGTCGTATACAAGT | + |
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Preference number: 2 (lower is better) Translates to: PELRPAPRSSEQSPCMSVLLLSR*YTSYTS Trigger: ACTTGTATACGACGTGTATCATCGAGAAAGGAGAAG...TACAGACATACAAGGAGATTGTTCACTGCTGCGAGGAGCAGGTCTTAACTCTGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000490145.1 |
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| 3UTR-3UTR TCA 90 bp | ATTCCATTTTCATTTTTCAGAAAGCAATACTTCCGTGGGATACCCACTCCCTACAGGTTGAGGCTGCAATaGGCTGTGATTGGGCCACTT | + |
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Preference number: 2 (lower is better) Translates to: IPFSFFRKQYFRGIPTPYRLRLQ*AVIGPL Trigger: AAGTGGCCCAATCACAGCTCATTGCAGCCTCAACCT...GTAGGGAGTGGGTATCCCACGGAAGTATTGCTTTCTGAAAAATGAAAATGGAAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000497116.1 |
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| 3UTR-3UTR TCA 90 bp | ATTCCATTTTCATTTTTCAGAAAGCAATACTTCCGTGGGATACCCACTCCCTACAGTTACTTAGGAGGCTaGGGGGAGGATCACCTGAAC | + |
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Preference number: 2 (lower is better) Translates to: IPFSFFRKQYFRGIPTPYSYLGG*GEDHLN Trigger: GTTCAGGTGATCCTCCCCTCAGCCTCCTAAGTAACT...GTAGGGAGTGGGTATCCCACGGAAGTATTGCTTTCTGAAAAATGAAAATGGAAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENST00000497116.1 |
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| 3UTR-3UTR CCA 90 bp | CCAGAGTTAAGACCTGCTCCTCGCAGCAGTGAACAATCTCCTTGTATGTCTGTATCGTATACAAGTCACTaGTTTATGTCTCCATTAACT | + |
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Preference number: 2 (lower is better) Translates to: PELRPAPRSSEQSPCMSVSYTSH*FMSPLT Trigger: AGTTAATGGAGACATAAACCAGTGACTTGTATACGA...TACAGACATACAAGGAGATTGTTCACTGCTGCGAGGAGCAGGTCTTAACTCTGG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000490145.1 |
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| 3UTR CCA 72 bp | TGGGTGTCTCACCCTCCACAGCATAGGTCTGTTCAGTaGCCAGAGTTAAGACCTGCTCCTCGCAGCAGTGAA | + |
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Preference number: 3 (lower is better) Translates to: WVSHPPQHRSVQ*PELRPAPRSSE Trigger: TTCACTGCTGCGAGGAGCAGGTCTTAACTCTGGCCACTGAACAGACCTATGCTGTGGAGGGTGAGACACCCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000490145.1 |
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| 3UTR-3UTR CAA 90 bp | ATACTTCCGTGGGATACCCACTCCCTACTTAAAAGCATTTCTTGGCCAGGCATACCTGAGTCCAAGAGGTaGAGACCAGCCTGGGCAAGA | + |
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Preference number: 3 (lower is better) Translates to: ILPWDTHSLLKSISWPGIPESKR*RPAWAR Trigger: TCTTGCCCAGGCTGGTCTCAACCTCTTGGACTCAGG...TATGCCTGGCCAAGAAATGCTTTTAAGTAGGGAGTGGGTATCCCACGGAAGTAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000497116.1 |
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| 3UTR TCA 72 bp | TCAGTGGCCAGAGTTAAGACCTGCTCCTCGCAGCAGTaGACAATCTCCTTGTATGTCTGTAGGGGCACCATT | + |
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Preference number: 3 (lower is better) Translates to: SVARVKTCSSQQ*TISLYVCRGTI Trigger: AATGGTGCCCCTACAGACATACAAGGAGATTGTTCACTGCTGCGAGGAGCAGGTCTTAACTCTGGCCACTGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000490145.1 |
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| CDS-3UTR CCA 90 bp | GGCACTGAACCAGCCCCACAGCACGCAGCACAGGTAACCTCGCAGGTTACCAGCACCAGGTGTGCCAGCTaGAGCAGGCAGACCACAGCC | + |
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Preference number: 4 (lower is better) Translates to: GTEPAPQHAAQVTSQVTSTRCAS*SRQTTA Trigger: GGCTGTGGTCTGCCTGCTCCAGCTGGCACACCTGGT...GCTGGTAACCTGCGAGGTTACCTGTGCTGCGTGCTGTGGGGCTGGTTCAGTGCC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000468918.5 |
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| CDS-3UTR TCA 90 bp | CAGGCAGACCACAGCCAGCAGGAAGCTCCAAAGAACAATGTCCAGGCCACAGGCAGCGGCTTCTTCTCCTaGGACTCAGGCGGGGCAGGG | + |
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Preference number: 4 (lower is better) Translates to: QADHSQQEAPKNNVQATGSGFFS*DSGGAG Trigger: CCCTGCCCCGCCTGAGTCTCAGGAGAAGAAGCCGCT...GCCTGTGGCCTGGACATTGTTCTTTGGAGCTTCCTGCTGGCTGTGGTCTGCCTG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000468918.5 |
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| CDS-3UTR TCA 90 bp | CAGACCACAGCCAGCAGGAAGCTCCAAAGAACAATGTCCAGGCCACAGGCACTGCTTCTCCTTTCTCGATaGTACACGCATCGCGCGCCT | + |
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Preference number: 4 (lower is better) Translates to: QTTASRKLQRTMSRPQALLLLSR*YTHRAP Trigger: AGGCGCGCGATGCGTGTATCATCGAGAAAGGAGAAG...CAGTGCCTGTGGCCTGGACATTGTTCTTTGGAGCTTCCTGCTGGCTGTGGTCTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000468918.5 |
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| CDS-3UTR GCA 90 bp | CAGGCAGACCACAGCCAGCAGGAAGCTCCAAAGAACAATGTCCAGGCCACAGGCAAGTACAGGAAGTCCTaGTTCTCTCTGACAGGTGGG | + |
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Preference number: 4 (lower is better) Translates to: QADHSQQEAPKNNVQATGKYRKS*FSLTGG Trigger: CCCACCTGTCAGAGAGAAGCAGGACTTCCTGTACTT...GCCTGTGGCCTGGACATTGTTCTTTGGAGCTTCCTGCTGGCTGTGGTCTGCCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000468918.5 |
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| CDS-3UTR CCA 90 bp | TGTAGTGCAGAAACTGCCCATCCTGGCTCACACGAACCCGGCCAGAGAGCAGCACATAGGTCTGTTCAGTaGCCAGAGTTAAGACCTGCT | + |
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Preference number: 4 (lower is better) Translates to: CSAETAHPGSHEPGQRAAHRSVQ*PELRPA Trigger: AGCAGGTCTTAACTCTGGCCACTGAACAGACCTATG...TGCTGCTCTCTGGCCGGGTTCGTGTGAGCCAGGATGGGCAGTTTCTGCACTACA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000490145.1 |
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| 3UTR CAA 72 bp | GCACGCAGCACAGGTAACCTCGCAGGTTACCAGCTATaGGATCAGGGTGATTTCCTTATCCTCTCCAAGCAC | + |
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Preference number: 4 (lower is better) Translates to: ARSTGNLAGYQL*DQGDFLILSKH Trigger: GTGCTTGGAGAGGATAAGGAAATCACCCTGATCCAATAGCTGGTAACCTGCGAGGTTACCTGTGCTGCGTGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000468918.5 |
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| CDS-3UTR TCA 90 bp | TCCATTTTCATTTTTCAGAAAGCAATACTTCCGTGGGATACCCACTCCCTACTTAGCGGCTTCTTCTCCTaGGACTCAGGCGGGGCAGGG | + |
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Preference number: 4 (lower is better) Translates to: SIFIFQKAILPWDTHSLLSGFFS*DSGGAG Trigger: CCCTGCCCCGCCTGAGTCTCAGGAGAAGAAGCCGCT...AAGTAGGGAGTGGGTATCCCACGGAAGTATTGCTTTCTGAAAAATGAAAATGGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000497116.1 |
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| CDS-3UTR CCA 90 bp | GTGTCTCACCCTCCACAGCATAGGTCTGTTCAGTGGCCAGAGTTAAGACCTGCTGTAGGAAGGAATGAGTaGTTGAAGCTTGCCGTTCTC | + |
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Preference number: 4 (lower is better) Translates to: VSHPPQHRSVQWPELRPAVGRNE*LKLAVL Trigger: GAGAACGGCAAGCTTCAACCACTCATTCCTTCCTAC...AGCAGGTCTTAACTCTGGCCACTGAACAGACCTATGCTGTGGAGGGTGAGACAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000490145.1 |
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| CDS-3UTR TCA 90 bp | GTATGGAAAGATGTAGTGCAGAAACTGCCCATCCTGGCTCACACGAACCCGGCCCTTCTCCTTTCTCGATaGTACACGTCGTATACAAGT | + |
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Preference number: 4 (lower is better) Translates to: VWKDVVQKLPILAHTNPALLLSR*YTSYTS Trigger: ACTTGTATACGACGTGTATCATCGAGAAAGGAGAAG...GGCCGGGTTCGTGTGAGCCAGGATGGGCAGTTTCTGCACTACATCTTTCCATAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000490145.1 |
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| CDS-3UTR TCA 90 bp | CCAGAGTTAAGACCTGCTCCTCGCAGCAGTGAACAATCTCCTTGTATGTCTGTAGAAGGAATGAGTGGTTaGAGCTTGCCGTTCTCCTCT | + |
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Preference number: 4 (lower is better) Translates to: PELRPAPRSSEQSPCMSVEGMSG*SLPFSS Trigger: AGAGGAGAACGGCAAGCTTCAACCACTCATTCCTTC...TACAGACATACAAGGAGATTGTTCACTGCTGCGAGGAGCAGGTCTTAACTCTGG 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000490145.1 |
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| CDS-3UTR TCA 90 bp | CATAGGTCTGTTCAGTGGCCAGAGTTAAGACCTGCTCCTCGCAGCAGTGAACAAATTTGTAGGAAGGAATaGGTGGTTGAAGCTTGCCGT | + |
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Preference number: 4 (lower is better) Translates to: HRSVQWPELRPAPRSSEQICRKE*VVEACR Trigger: ACGGCAAGCTTCAACCACTCATTCCTTCCTACAAAT...TTGTTCACTGCTGCGAGGAGCAGGTCTTAACTCTGGCCACTGAACAGACCTATG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000490145.1 |
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| CDS-3UTR TCA 90 bp | CCAGAGTTAAGACCTGCTCCTCGCAGCAGTGAACAATCTCCTTGTATGTCTGTATGCTCCTCGCAGCAGTaGACAATCTCCTTGTATGTC | + |
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Preference number: 4 (lower is better) Translates to: PELRPAPRSSEQSPCMSVCSSQQ*TISLYV Trigger: GACATACAAGGAGATTGTTCACTGCTGCGAGGAGCA...TACAGACATACAAGGAGATTGTTCACTGCTGCGAGGAGCAGGTCTTAACTCTGG 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000490145.1 |
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| CDS-3UTR TCA 90 bp | CACGTCGTATACAAGTCACTGGTTTATGTCTCCATTAACTTTAAGCTCCTTTATGCAGGGACAGGCGGTTaGTGGGTGTCTCACCCTCCA | + |
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Preference number: 4 (lower is better) Translates to: HVVYKSLVYVSINFKLLYAGTGG*WVSHPP Trigger: TGGAGGGTGAGACACCCATCAACCGCCTGTCCCTGC...ATAAAGGAGCTTAAAGTTAATGGAGACATAAACCAGTGACTTGTATACGACGTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000490145.1 |
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| CDS-3UTR CCA 90 bp | TTCTCCTTTCTCGATGATACACGTCGTATACAAGTCACTGGTTTATGTCTCCATAGAAACTGCCCATCCTaGCTCACACGAACCCGGCCA | + |
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Preference number: 4 (lower is better) Translates to: FSFLDDTRRIQVTGLCLHRNCPS*LTRTRP Trigger: TGGCCGGGTTCGTGTGAGCCAGGATGGGCAGTTTCT...ATGGAGACATAAACCAGTGACTTGTATACGACGTGTATCATCGAGAAAGGAGAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000490145.1 |
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| CDS-3UTR TCA 90 bp | TCCATTTTCATTTTTCAGAAAGCAATACTTCCGTGGGATACCCACTCCCTACTTCTTCTCCTTTCTCGATaGTACACGCATCGCGCGCCT | + |
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Preference number: 4 (lower is better) Translates to: SIFIFQKAILPWDTHSLLLLLSR*YTHRAP Trigger: AGGCGCGCGATGCGTGTATCATCGAGAAAGGAGAAG...AAGTAGGGAGTGGGTATCCCACGGAAGTATTGCTTTCTGAAAAATGAAAATGGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000497116.1 |
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| CDS-3UTR TCA 90 bp | ATTCCATTTTCATTTTTCAGAAAGCAATACTTCCGTGGGATACCCACTCCCTACCTGAGTCCAAGAGGTTaGGACCAGCCTGGGCAAGAT | + |
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Preference number: 4 (lower is better) Translates to: IPFSFFRKQYFRGIPTPYLSPRG*DQPGQD Trigger: ATCTTGCCCAGGCTGGTCTCAACCTCTTGGACTCAG...GTAGGGAGTGGGTATCCCACGGAAGTATTGCTTTCTGAAAAATGAAAATGGAAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000497116.1 |
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| CDS-3UTR CCA 90 bp | ATTCCATTTTCATTTTTCAGAAAGCAATACTTCCGTGGGATACCCACTCCCTACGCAATGAGCTGTGATTaGGCCACTTCACCCCAGCCT | + |
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Preference number: 4 (lower is better) Translates to: IPFSFFRKQYFRGIPTPYAMSCD*ATSPQP Trigger: AGGCTGGGGTGAAGTGGCCCAATCACAGCTCATTGC...GTAGGGAGTGGGTATCCCACGGAAGTATTGCTTTCTGAAAAATGAAAATGGAAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000497116.1 |
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| CDS-3UTR CCA 90 bp | CTGGTATGGAAAGATGTAGTGCAGAAACTGCCCATCCTGGCTCACACGAACCCGTCGTATACAAGTCACTaGTTTATGTCTCCATTAACT | + |
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Preference number: 4 (lower is better) Translates to: LVWKDVVQKLPILAHTNPSYTSH*FMSPLT Trigger: AGTTAATGGAGACATAAACCAGTGACTTGTATACGA...CGGGTTCGTGTGAGCCAGGATGGGCAGTTTCTGCACTACATCTTTCCATACCAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000490145.1 |
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| CDS-3UTR CCA 90 bp | ATACTTCCGTGGGATACCCACTCCCTACTTAAAAGCATTTCTTGGCCAGGCATAAAAGCAATACTTCCGTaGGATACCCACTCCCTACTT | + |
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Preference number: 4 (lower is better) Translates to: ILPWDTHSLLKSISWPGIKAILP*DTHSLL Trigger: AAGTAGGGAGTGGGTATCCCACGGAAGTATTGCTTT...TATGCCTGGCCAAGAAATGCTTTTAAGTAGGGAGTGGGTATCCCACGGAAGTAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000497116.1 |
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| CDS-3UTR CCA 90 bp | CCAGAGTTAAGACCTGCTCCTCGCAGCAGTGAACAATCTCCTTGTATGTCTGTAGTCCATGAACTGGTATaGAAAGATGTAGTGCAGAAA | + |
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Preference number: 4 (lower is better) Translates to: PELRPAPRSSEQSPCMSVVHELV*KDVVQK Trigger: TTTCTGCACTACATCTTTCCATACCAGTTCATGGAC...TACAGACATACAAGGAGATTGTTCACTGCTGCGAGGAGCAGGTCTTAACTCTGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000490145.1 |
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| CDS-3UTR TCA 90 bp | CGCAGCAGTGAACAATCTCCTTGTATGTCTGTAGGGGCACCATTTCATATTTTAACTCAGGAGAGTCCATaGACTGGTATGGAAAGATGT | + |
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Preference number: 4 (lower is better) Translates to: RSSEQSPCMSVGAPFHILTQESP*TGMERC Trigger: ACATCTTTCCATACCAGTTCATGGACTCTCCTGAGT...TAAAATATGAAATGGTGCCCCTACAGACATACAAGGAGATTGTTCACTGCTGCG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000490145.1 |
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| CDS-3UTR CAA 90 bp | TGTAGTGCAGAAACTGCCCATCCTGGCTCACACGAACCCGGCCAGAGAGCAGCAAGCAGGGACAGGCGGTaGATGGGTGTCTCACCCTCC | + |
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Preference number: 5 (lower is better) Translates to: CSAETAHPGSHEPGQRAASRDRR*MGVSPS Trigger: GGAGGGTGAGACACCCATCAACCGCCTGTCCCTGCT...TGCTGCTCTCTGGCCGGGTTCGTGTGAGCCAGGATGGGCAGTTTCTGCACTACA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000490145.1 |
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| CDS-3UTR CAA 90 bp | CCAGAGTTAAGACCTGCTCCTCGCAGCAGTGAACAATCTCCTTGTATGTCTGTAGGAAGGAATGAGTGGTaGAAGCTTGCCGTTCTCCTC | + |
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Preference number: 5 (lower is better) Translates to: PELRPAPRSSEQSPCMSVGRNEW*KLAVLL Trigger: GAGGAGAACGGCAAGCTTCAACCACTCATTCCTTCC...TACAGACATACAAGGAGATTGTTCACTGCTGCGAGGAGCAGGTCTTAACTCTGG 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000490145.1 |
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| CDS-3UTR CAA 90 bp | TCCATTTTCATTTTTCAGAAAGCAATACTTCCGTGGGATACCCACTCCCTACTTCCTGAGTCCAAGAGGTaGAGACCAGCCTGGGCAAGA | + |
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Preference number: 5 (lower is better) Translates to: SIFIFQKAILPWDTHSLLPESKR*RPAWAR Trigger: TCTTGCCCAGGCTGGTCTCAACCTCTTGGACTCAGG...AAGTAGGGAGTGGGTATCCCACGGAAGTATTGCTTTCTGAAAAATGAAAATGGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000497116.1 |
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| CDS GCA 90 bp | CACTGGTTTATGTCTCCATTAACTTTAAGCTCCTTTATATCAAGATaGATCTTTATCCATGTCTACATCTTCGGACCTAACGCAGTGCTT | + |
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Preference number: 5 (lower is better) Translates to: HWFMSPLTLSSFISR*IFIHVYIFGPNAVL Trigger: AAGCACTGCGTTAGGTCCGAAGATGTAGACATGGATAAAGATGCATCTTGATATAAAGGAGCTTAAAGTTAATGGAGACATAAACCAGTG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000490145.1 |
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| CDS GCA 72 bp | ATGTCTCCATTAACTTTAAGCTCCTTTATATCAAGATaGATCTTTATCCATGTCTACATCTTCGGACCTAAC | + |
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Preference number: 6 (lower is better) Translates to: MSPLTLSSFISR*IFIHVYIFGPN Trigger: GTTAGGTCCGAAGATGTAGACATGGATAAAGATGCATCTTGATATAAAGGAGCTTAAAGTTAATGGAGACAT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000490145.1 |
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