Pregenerated sensors for COPRS (Homo sapiens)
Ensembl gene IDs: ENSG00000172301Ensembl transcript IDs: ENST00000302362.11, ENST00000378634.6, ENST00000496655.1, ENST00000579741.1
Found 41 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | AATGACGGGGCCTTATTGAACACTGTCAATAAGGAACACTGGTCTGTGTACCCCACAGACTGGCGAGAATaGCGGGGCCTTATTGAACAC | + |
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Preference number: 2 (lower is better) Translates to: NDGALLNTVNKEHWSVYPTDWRE*RGLIEH Trigger: GTGTTCAATAAGGCCCCGTCATTCTCGCCAGTCTGT...GGGGTACACAGACCAGTGTTCCTTATTGACAGTGTTCAATAAGGCCCCGTCATT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENST00000302362.11 ENST00000378634.6 ENST00000496655.1 |
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| 3UTR-3UTR CCA 90 bp | AATGACGGGGCCTTATTGAACACTGTCAATAAGGAACACTGGTCTGTGTACCCCATAATAGGGTATCAGTaGAGGCGGATGGTGCCAGCT | + |
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Preference number: 2 (lower is better) Translates to: NDGALLNTVNKEHWSVYPIIGYQ*RRMVPA Trigger: AGCTGGCACCATCCGCCTCCACTGATACCCTATTAT...GGGGTACACAGACCAGTGTTCCTTATTGACAGTGTTCAATAAGGCCCCGTCATT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000496655.1 |
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| 3UTR-3UTR TCA 90 bp | GACGGGGCCTTATTGAACACTGTCAATAAGGAACACTGGTCTGTGTACCCCAGAATGACGGGGCCTTATTaGACACTGTCAATAAGGAAC | + |
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Preference number: 2 (lower is better) Translates to: DGALLNTVNKEHWSVYPRMTGPY*TLSIRN Trigger: GTTCCTTATTGACAGTGTTCAATAAGGCCCCGTCAT...TCTGGGGTACACAGACCAGTGTTCCTTATTGACAGTGTTCAATAAGGCCCCGTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENST00000302362.11 ENST00000378634.6 ENST00000496655.1 |
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| 3UTR-3UTR GCA 90 bp | AATGACGGGGCCTTATTGAACACTGTCAATAAGGAACACTGGTCTGTGTACCCCTGGATTCCCTTGATCTaGTTTCAACTCCGAGTCCCA | + |
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Preference number: 2 (lower is better) Translates to: NDGALLNTVNKEHWSVYPWIPLI*FQLRVP Trigger: TGGGACTCGGAGTTGAAAGCAGATCAAGGGAATCCA...GGGGTACACAGACCAGTGTTCCTTATTGACAGTGTTCAATAAGGCCCCGTCATT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000496655.1 |
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| 3UTR-3UTR CCA 90 bp | GACGGGGCCTTATTGAACACTGTCAATAAGGAACACTGGTCTGTGTACCCCAGAGTCAATAAGGAACACTaGTCTGTGTACCCCAGACTA | + |
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Preference number: 2 (lower is better) Translates to: DGALLNTVNKEHWSVYPRVNKEH*SVYPRL Trigger: TAGTCTGGGGTACACAGACCAGTGTTCCTTATTGAC...TCTGGGGTACACAGACCAGTGTTCCTTATTGACAGTGTTCAATAAGGCCCCGTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENST00000302362.11 ENST00000378634.6 ENST00000496655.1 |
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| 3UTR-3UTR TCA 90 bp | AATGACGGGGCCTTATTGAACACTGTCAATAAGGAACACTGGTCTGTGTACCCCCAAGGTTTAAGCTCTTaGGAAATGCTCTCCTGGATG | + |
|
Preference number: 2 (lower is better) Translates to: NDGALLNTVNKEHWSVYPQGLSS*EMLSWM Trigger: CATCCAGGAGAGCATTTCTCAAGAGCTTAAACCTTG...GGGGTACACAGACCAGTGTTCCTTATTGACAGTGTTCAATAAGGCCCCGTCATT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000496655.1 |
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| 3UTR-3UTR GCA 90 bp | AATGACGGGGCCTTATTGAACACTGTCAATAAGGAACACTGGTCTGTGTACCCCCAGACTAGGGGTCACTaGAAACATTTTCTCAGATAT | + |
|
Preference number: 2 (lower is better) Translates to: NDGALLNTVNKEHWSVYPQTRGH*KHFLRY Trigger: ATATCTGAGAAAATGTTTGCAGTGACCCCTAGTCTG...GGGGTACACAGACCAGTGTTCCTTATTGACAGTGTTCAATAAGGCCCCGTCATT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 3 transcripts: ENST00000302362.11 ENST00000378634.6 ENST00000496655.1 |
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| 3UTR TCA 72 bp | AACAACAACAGACTGGCGAGAATGACGGGGCCTTATTaGACACTGTCAATAAGGAACACTGGTCTGTGTACC | + |
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Preference number: 3 (lower is better) Translates to: NNNRLARMTGPY*TLSIRNTGLCT Trigger: GGTACACAGACCAGTGTTCCTTATTGACAGTGTTCAATAAGGCCCCGTCATTCTCGCCAGTCTGTTGTTGTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000302362.11 ENST00000378634.6 ENST00000496655.1 |
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| 3UTR-3UTR CAA 90 bp | AATGACGGGGCCTTATTGAACACTGTCAATAAGGAACACTGGTCTGTGTACCCCAATGACGGGGCCTTATaGAACACTGTCAATAAGGAA | + |
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Preference number: 3 (lower is better) Translates to: NDGALLNTVNKEHWSVYPNDGAL*NTVNKE Trigger: TTCCTTATTGACAGTGTTCAATAAGGCCCCGTCATT...GGGGTACACAGACCAGTGTTCCTTATTGACAGTGTTCAATAAGGCCCCGTCATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENST00000302362.11 ENST00000378634.6 ENST00000496655.1 |
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| CDS-3UTR TCA 90 bp | TCCCAGGTATTCAGTTCTCCATCAGAGTCCTCCTCATCCATGGCAAAGCCTTCCTGGGCCCCGGCGGCCTaGAGGTCCATGCCCTGCGGC | + |
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Preference number: 4 (lower is better) Translates to: SQVFSSPSESSSSMAKPSWAPAA*RSMPCG Trigger: GCCGCAGGGCATGGACCTTCAGGCCGCCGGGGCCCA...GGAAGGCTTTGCCATGGATGAGGAGGACTCTGATGGAGAACTGAATACCTGGGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000496655.1 |
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| CDS-3UTR GCA 90 bp | TCCCAGGTATTCAGTTCTCCATCAGAGTCCTCCTCATCCATGGCAAAGCCTTCCCGGCCTGAAGGTCCATaGCCTGCGGCCCGCGGCTGG | + |
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Preference number: 4 (lower is better) Translates to: SQVFSSPSESSSSMAKPSRPEGP*PAARGW Trigger: CCAGCCGCGGGCCGCAGGGCATGGACCTTCAGGCCG...GGAAGGCTTTGCCATGGATGAGGAGGACTCTGATGGAGAACTGAATACCTGGGA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000496655.1 |
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| CDS-3UTR TCA 90 bp | AATGACGGGGCCTTATTGAACACTGTCAATAAGGAACACTGGTCTGTGTACCCCTGGGCCCCGGCGGCCTaGAGGTCCATGCCCTGCGGC | + |
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Preference number: 4 (lower is better) Translates to: NDGALLNTVNKEHWSVYPWAPAA*RSMPCG Trigger: GCCGCAGGGCATGGACCTTCAGGCCGCCGGGGCCCA...GGGGTACACAGACCAGTGTTCCTTATTGACAGTGTTCAATAAGGCCCCGTCATT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENST00000302362.11 ENST00000496655.1 |
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| CDS-3UTR GCA 90 bp | GACGGGGCCTTATTGAACACTGTCAATAAGGAACACTGGTCTGTGTACCCCAGACGGCCTGAAGGTCCATaGCCTGCGGCCCGCGGCTGG | + |
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Preference number: 4 (lower is better) Translates to: DGALLNTVNKEHWSVYPRRPEGP*PAARGW Trigger: CCAGCCGCGGGCCGCAGGGCATGGACCTTCAGGCCG...TCTGGGGTACACAGACCAGTGTTCCTTATTGACAGTGTTCAATAAGGCCCCGTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000302362.11 ENST00000496655.1 |
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| CDS-3UTR CCA 90 bp | AATGACGGGGCCTTATTGAACACTGTCAATAAGGAACACTGGTCTGTGTACCCCCGCGGCCCCGCGGCCTaGCCGTTTTCAGCTCGAGCG | + |
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Preference number: 4 (lower is better) Translates to: NDGALLNTVNKEHWSVYPRGPAA*PFSARA Trigger: CGCTCGAGCTGAAAACGGCCAGGCCGCGGGGCCGCG...GGGGTACACAGACCAGTGTTCCTTATTGACAGTGTTCAATAAGGCCCCGTCATT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENST00000378634.6 |
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| CDS-3UTR TCA 90 bp | AATGACGGGGCCTTATTGAACACTGTCAATAAGGAACACTGGTCTGTGTACCCCGACAGCCGTCTCTGCTaGCCCAGAGCGCCCACCCAC | + |
|
Preference number: 4 (lower is better) Translates to: NDGALLNTVNKEHWSVYPDSRLC*PRAPTH Trigger: GTGGGTGGGCGCTCTGGGTCAGCAGAGACGGCTGTC...GGGGTACACAGACCAGTGTTCCTTATTGACAGTGTTCAATAAGGCCCCGTCATT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000378634.6 |
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| CDS-3UTR CCA 90 bp | GACGGGGCCTTATTGAACACTGTCAATAAGGAACACTGGTCTGTGTACCCCAGAGTAGCAAAGCCAGCCTaGCCCTCGCCCAGGCTCCTG | + |
|
Preference number: 4 (lower is better) Translates to: DGALLNTVNKEHWSVYPRVAKPA*PSPRLL Trigger: CAGGAGCCTGGGCGAGGGCCAGGCTGGCTTTGCTAC...TCTGGGGTACACAGACCAGTGTTCCTTATTGACAGTGTTCAATAAGGCCCCGTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000378634.6 |
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| CDS-3UTR CCA 90 bp | AATGACGGGGCCTTATTGAACACTGTCAATAAGGAACACTGGTCTGTGTACCCCCCTTCCTCTTCAGAATaGGTGCCCTCACCCCGGGCA | + |
|
Preference number: 4 (lower is better) Translates to: NDGALLNTVNKEHWSVYPPSSSE*VPSPRA Trigger: TGCCCGGGGTGAGGGCACCCATTCTGAAGAGGAAGG...GGGGTACACAGACCAGTGTTCCTTATTGACAGTGTTCAATAAGGCCCCGTCATT 53% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt. Matches the following 3 transcripts: ENST00000302362.11 ENST00000378634.6 ENST00000496655.1 |
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| CDS-3UTR CCA 90 bp | GGGGCCTTATTGAACACTGTCAATAAGGAACACTGGTCTGTGTACCCCAGACTACCTTCCTCTTCAGAATaGGTGCCCTCACCCCGGGCA | + |
|
Preference number: 4 (lower is better) Translates to: GALLNTVNKEHWSVYPRLPSSSE*VPSPRA Trigger: TGCCCGGGGTGAGGGCACCCATTCTGAAGAGGAAGG...TAGTCTGGGGTACACAGACCAGTGTTCCTTATTGACAGTGTTCAATAAGGCCCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENST00000302362.11 ENST00000378634.6 ENST00000496655.1 |
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| CDS-3UTR TCA 90 bp | GCTCCCAGGTATTCAGTTCTCCATCAGAGTCCTCCTCATCCATGGCAAAGCCTTACAGACTGGCGAGAATaGCGGGGCCTTATTGAACAC | + |
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Preference number: 4 (lower is better) Translates to: APRYSVLHQSPPHPWQSLTDWRE*RGLIEH Trigger: GTGTTCAATAAGGCCCCGTCATTCTCGCCAGTCTGT...AAGGCTTTGCCATGGATGAGGAGGACTCTGATGGAGAACTGAATACCTGGGAGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000496655.1 |
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| CDS-3UTR TCA 90 bp | GGGGCCTTATTGAACACTGTCAATAAGGAACACTGGTCTGTGTACCCCAGACTAACAGACTGGCGAGAATaGCGGGGCCTTATTGAACAC | + |
|
Preference number: 4 (lower is better) Translates to: GALLNTVNKEHWSVYPRLTDWRE*RGLIEH Trigger: GTGTTCAATAAGGCCCCGTCATTCTCGCCAGTCTGT...TAGTCTGGGGTACACAGACCAGTGTTCCTTATTGACAGTGTTCAATAAGGCCCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENST00000302362.11 ENST00000378634.6 ENST00000496655.1 |
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| CDS-3UTR GCA 90 bp | TCCCAGGTATTCAGTTCTCCATCAGAGTCCTCCTCATCCATGGCAAAGCCTTCCTGGATTCCCTTGATCTaGTTTCAACTCCGAGTCCCA | + |
|
Preference number: 4 (lower is better) Translates to: SQVFSSPSESSSSMAKPSWIPLI*FQLRVP Trigger: TGGGACTCGGAGTTGAAAGCAGATCAAGGGAATCCA...GGAAGGCTTTGCCATGGATGAGGAGGACTCTGATGGAGAACTGAATACCTGGGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000496655.1 |
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| CDS-3UTR CCA 90 bp | GACGGGGCCTTATTGAACACTGTCAATAAGGAACACTGGTCTGTGTACCCCAGAATAATAGGGTATCAGTaGAGGCGGATGGTGCCAGCT | + |
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Preference number: 4 (lower is better) Translates to: DGALLNTVNKEHWSVYPRIIGYQ*RRMVPA Trigger: AGCTGGCACCATCCGCCTCCACTGATACCCTATTAT...TCTGGGGTACACAGACCAGTGTTCCTTATTGACAGTGTTCAATAAGGCCCCGTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000302362.11 ENST00000378634.6 ENST00000496655.1 |
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| CDS-3UTR TCA 90 bp | GCTCCCAGGTATTCAGTTCTCCATCAGAGTCCTCCTCATCCATGGCAAAGCCTTATGACGGGGCCTTATTaGACACTGTCAATAAGGAAC | + |
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Preference number: 4 (lower is better) Translates to: APRYSVLHQSPPHPWQSLMTGPY*TLSIRN Trigger: GTTCCTTATTGACAGTGTTCAATAAGGCCCCGTCAT...AAGGCTTTGCCATGGATGAGGAGGACTCTGATGGAGAACTGAATACCTGGGAGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000496655.1 |
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| CDS-3UTR GCA 90 bp | GACGGGGCCTTATTGAACACTGTCAATAAGGAACACTGGTCTGTGTACCCCAGATGGATTCCCTTGATCTaGTTTCAACTCCGAGTCCCA | + |
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Preference number: 4 (lower is better) Translates to: DGALLNTVNKEHWSVYPRWIPLI*FQLRVP Trigger: TGGGACTCGGAGTTGAAAGCAGATCAAGGGAATCCA...TCTGGGGTACACAGACCAGTGTTCCTTATTGACAGTGTTCAATAAGGCCCCGTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000302362.11 ENST00000378634.6 ENST00000496655.1 |
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| CDS-3UTR TCA 90 bp | GACGGGGCCTTATTGAACACTGTCAATAAGGAACACTGGTCTGTGTACCCCAGACAAGGTTTAAGCTCTTaGGAAATGCTCTCCTGGATG | + |
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Preference number: 4 (lower is better) Translates to: DGALLNTVNKEHWSVYPRQGLSS*EMLSWM Trigger: CATCCAGGAGAGCATTTCTCAAGAGCTTAAACCTTG...TCTGGGGTACACAGACCAGTGTTCCTTATTGACAGTGTTCAATAAGGCCCCGTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000302362.11 ENST00000378634.6 ENST00000496655.1 |
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| CDS-3UTR CCA 90 bp | GGGGCCTTATTGAACACTGTCAATAAGGAACACTGGTCTGTGTACCCCAGACTAAGGTTACTGTTCAACTaGGCAGAGAAGGCCACTAAG | + |
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Preference number: 4 (lower is better) Translates to: GALLNTVNKEHWSVYPRLRLLFN*AEKATK Trigger: CTTAGTGGCCTTCTCTGCCCAGTTGAACAGTAACCT...TAGTCTGGGGTACACAGACCAGTGTTCCTTATTGACAGTGTTCAATAAGGCCCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000496655.1 |
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| CDS-3UTR TCA 90 bp | GGGGCCTTATTGAACACTGTCAATAAGGAACACTGGTCTGTGTACCCCAGACTACAAGGTTTAAGCTCTTaGGAAATGCTCTCCTGGATG | + |
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Preference number: 4 (lower is better) Translates to: GALLNTVNKEHWSVYPRLQGLSS*EMLSWM Trigger: CATCCAGGAGAGCATTTCTCAAGAGCTTAAACCTTG...TAGTCTGGGGTACACAGACCAGTGTTCCTTATTGACAGTGTTCAATAAGGCCCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000302362.11 ENST00000378634.6 ENST00000496655.1 |
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| CDS-3UTR TCA 90 bp | AATGACGGGGCCTTATTGAACACTGTCAATAAGGAACACTGGTCTGTGTACCCCATGACGGGGCCTTATTaGACACTGTCAATAAGGAAC | + |
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Preference number: 4 (lower is better) Translates to: NDGALLNTVNKEHWSVYPMTGPY*TLSIRN Trigger: GTTCCTTATTGACAGTGTTCAATAAGGCCCCGTCAT...GGGGTACACAGACCAGTGTTCCTTATTGACAGTGTTCAATAAGGCCCCGTCATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENST00000302362.11 ENST00000378634.6 ENST00000496655.1 |
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| CDS-3UTR CCA 90 bp | AATGACGGGGCCTTATTGAACACTGTCAATAAGGAACACTGGTCTGTGTACCCCGTCAATAAGGAACACTaGTCTGTGTACCCCAGACTA | + |
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Preference number: 4 (lower is better) Translates to: NDGALLNTVNKEHWSVYPVNKEH*SVYPRL Trigger: TAGTCTGGGGTACACAGACCAGTGTTCCTTATTGAC...GGGGTACACAGACCAGTGTTCCTTATTGACAGTGTTCAATAAGGCCCCGTCATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENST00000302362.11 ENST00000378634.6 ENST00000496655.1 |
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| CDS-3UTR CCA 90 bp | GGGGCCTTATTGAACACTGTCAATAAGGAACACTGGTCTGTGTACCCCAGACTAGTCAATAAGGAACACTaGTCTGTGTACCCCAGACTA | + |
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Preference number: 4 (lower is better) Translates to: GALLNTVNKEHWSVYPRLVNKEH*SVYPRL Trigger: TAGTCTGGGGTACACAGACCAGTGTTCCTTATTGAC...TAGTCTGGGGTACACAGACCAGTGTTCCTTATTGACAGTGTTCAATAAGGCCCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENST00000302362.11 ENST00000378634.6 ENST00000496655.1 |
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| 3UTR CAA 72 bp | GAACAACAACAGACTGGCGAGAATGACGGGGCCTTATaGAACACTGTCAATAAGGAACACTGGTCTGTGTAC | + |
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Preference number: 4 (lower is better) Translates to: EQQQTGENDGAL*NTVNKEHWSVY Trigger: GTACACAGACCAGTGTTCCTTATTGACAGTGTTCAATAAGGCCCCGTCATTCTCGCCAGTCTGTTGTTGTTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000302362.11 ENST00000378634.6 ENST00000496655.1 |
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| CDS-3UTR TCA 90 bp | GTTCCACGGGCGTTTCAAGCTGTTTCTCTCGGTAGAAGGATGGATTTGAACATACAAGGTTTAAGCTCTTaGGAAATGCTCTCCTGGATG | + |
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Preference number: 4 (lower is better) Translates to: VPRAFQAVSLGRRMDLNIQGLSS*EMLSWM Trigger: CATCCAGGAGAGCATTTCTCAAGAGCTTAAACCTTG...TATGTTCAAATCCATCCTTCTACCGAGAGAAACAGCTTGAAACGCCCGTGGAAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000496655.1 |
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| CDS-3UTR GCA 90 bp | GACGGGGCCTTATTGAACACTGTCAATAAGGAACACTGGTCTGTGTACCCCAGACAGACTAGGGGTCACTaGAAACATTTTCTCAGATAT | + |
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Preference number: 4 (lower is better) Translates to: DGALLNTVNKEHWSVYPRQTRGH*KHFLRY Trigger: ATATCTGAGAAAATGTTTGCAGTGACCCCTAGTCTG...TCTGGGGTACACAGACCAGTGTTCCTTATTGACAGTGTTCAATAAGGCCCCGTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 3 transcripts: ENST00000302362.11 ENST00000378634.6 ENST00000496655.1 |
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| CDS-3UTR CCA 90 bp | AATGACGGGGCCTTATTGAACACTGTCAATAAGGAACACTGGTCTGTGTACCCCGTCGTCAGCATCATATaGATTCCCTTGATCTGCTTT | + |
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Preference number: 4 (lower is better) Translates to: NDGALLNTVNKEHWSVYPVVSII*IPLICF Trigger: AAAGCAGATCAAGGGAATCCATATGATGCTGACGAC...GGGGTACACAGACCAGTGTTCCTTATTGACAGTGTTCAATAAGGCCCCGTCATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000302362.11 ENST00000378634.6 ENST00000496655.1 |
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| CDS-3UTR CCA 90 bp | GGGGCCTTATTGAACACTGTCAATAAGGAACACTGGTCTGTGTACCCCAGACTAGTCGTCAGCATCATATaGATTCCCTTGATCTGCTTT | + |
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Preference number: 4 (lower is better) Translates to: GALLNTVNKEHWSVYPRLVVSII*IPLICF Trigger: AAAGCAGATCAAGGGAATCCATATGATGCTGACGAC...TAGTCTGGGGTACACAGACCAGTGTTCCTTATTGACAGTGTTCAATAAGGCCCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000302362.11 ENST00000378634.6 ENST00000496655.1 |
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| CDS TCA 90 bp | AGCCAAATCCGCAGCGGCGCCCAGCGGGCGGACAGCCGTCTCTGCTaGCCCAGAGCGCCCACCCACGCCCTCGGCTTTCCCCGCCCCGCA | + |
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Preference number: 5 (lower is better) Translates to: SQIRSGAQRADSRLC*PRAPTHALGFPRPA Trigger: TGCGGGGCGGGGAAAGCCGAGGGCGTGGGTGGGCGCTCTGGGTCAGCAGAGACGGCTGTCCGCCCGCTGGGCGCCGCTGCGGATTTGGCT 74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000579741.1 |
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| CDS TCA 90 bp | TACCAAATCCGCAGCGGCGCCCAGCGGGCGGACAGCCGTCTCTGCTaGCCCAGAGCGCCCACCCACGCCCTCGGCTTTCCCCGCCCCGCA | + |
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Preference number: 5 (lower is better) Translates to: YQIRSGAQRADSRLC*PRAPTHALGFPRPA Trigger: TGCGGGGCGGGGAAAGCCGAGGGCGTGGGTGGGCGCTCTGGGTCAGCAGAGACGGCTGTCCGCCCGCTGGGCGCCGCTGCGGATTTGGTA 73% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000378634.6 |
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| CDS-3UTR CAA 90 bp | GGGGCCTTATTGAACACTGTCAATAAGGAACACTGGTCTGTGTACCCCAGACTAAATGACGGGGCCTTATaGAACACTGTCAATAAGGAA | + |
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Preference number: 5 (lower is better) Translates to: GALLNTVNKEHWSVYPRLNDGAL*NTVNKE Trigger: TTCCTTATTGACAGTGTTCAATAAGGCCCCGTCATT...TAGTCTGGGGTACACAGACCAGTGTTCCTTATTGACAGTGTTCAATAAGGCCCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENST00000302362.11 ENST00000378634.6 ENST00000496655.1 |
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| CDS-3UTR CAA 90 bp | GTTCCACGGGCGTTTCAAGCTGTTTCTCTCGGTAGAAGGATGGATTTGAACATAAATGACGGGGCCTTATaGAACACTGTCAATAAGGAA | + |
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Preference number: 5 (lower is better) Translates to: VPRAFQAVSLGRRMDLNINDGAL*NTVNKE Trigger: TTCCTTATTGACAGTGTTCAATAAGGCCCCGTCATT...TATGTTCAAATCCATCCTTCTACCGAGAGAAACAGCTTGAAACGCCCGTGGAAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000496655.1 |
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| CDS-3UTR CAA 90 bp | GGGGCCTTATTGAACACTGTCAATAAGGAACACTGGTCTGTGTACCCCAGACTAGGTAGAAGGATGGATTaGAACATAAGAAAAGTTCAG | + |
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Preference number: 5 (lower is better) Translates to: GALLNTVNKEHWSVYPRLGRRMD*NIRKVQ Trigger: CTGAACTTTTCTTATGTTCAAATCCATCCTTCTACC...TAGTCTGGGGTACACAGACCAGTGTTCCTTATTGACAGTGTTCAATAAGGCCCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000496655.1 |
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| CDS TCA 72 bp | CGCAGCGGCGCCCAGCGGGCGGACAGCCGTCTCTGCTaGCCCAGAGCGCCCACCCACGCCCTCGGCTTTCCC | + |
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Preference number: 6 (lower is better) Translates to: RSGAQRADSRLC*PRAPTHALGFP Trigger: GGGAAAGCCGAGGGCGTGGGTGGGCGCTCTGGGTCAGCAGAGACGGCTGTCCGCCCGCTGGGCGCCGCTGCG 76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000378634.6 ENST00000579741.1 |
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