RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for COL8A2 (Homo sapiens)

Ensembl gene IDs: ENSG00000171812

Ensembl transcript IDs: ENST00000303143.9, ENST00000397799.2, ENST00000481785.1

Found 433 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CAGCCAAGGGCTGTGAGGGAGGCCGTGCCCCTTTCCTCCAGCAGGTaGCATCAGGGAGCCAGTGGGAAGGGCTGTCTCCCCACGTGGCGG +
Preference number: 1 (lower is better)
Translates to: QPRAVREAVPLSSSR*HQGASGKGCLPTWR
Trigger: CCGCCACGTGGGGAGACAGCCCTTCCCACTGGCTCCCTGATGGCACCTGCTGGAGGAAAGGGGCACGGCCTCCCTCACAGCCCTTGGCTG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR GCA 90 bp GGAGTGGGGCTGGCCTGGCGAGGGCCGAGCGCGAGGCCCTGCAGCTaGGGGGAAAGTGGCCATCTTTGCACGAGCAGGAATGTCCACCAC +
Preference number: 1 (lower is better)
Translates to: GVGLAWRGPSARPCS*GESGHLCTSRNVHH
Trigger: GTGGTGGACATTCCTGCTCGTGCAAAGATGGCCACTTTCCCCGCAGCTGCAGGGCCTCGCGCTCGGCCCTCGCCAGGCCAGCCCCACTCC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR CCA 90 bp GAGATCACAGACCGAATGACCCCAGTTCACACTTGGTACAAGGAGTaGGGCTGGCCTGGCGAGGGCCGAGCGCGAGGCCCTGCAGCTGCG +
Preference number: 1 (lower is better)
Translates to: EITDRMTPVHTWYKE*GWPGEGRARGPAAA
Trigger: CGCAGCTGCAGGGCCTCGCGCTCGGCCCTCGCCAGGCCAGCCCCACTCCTTGTACCAAGTGTGAACTGGGGTCATTCGGTCTGTGATCTC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR GCA 90 bp GGGCCGAGCGCGAGGCCCTGCAGCTGCGGGGAAAGTGGCCATCTTTaGACGAGCAGGAATGTCCACCACTCCCAGCACTCATCTCAGCCT +
Preference number: 1 (lower is better)
Translates to: GPSARPCSCGESGHL*TSRNVHHSQHSSQP
Trigger: AGGCTGAGATGAGTGCTGGGAGTGGTGGACATTCCTGCTCGTGCAAAGATGGCCACTTTCCCCGCAGCTGCAGGGCCTCGCGCTCGGCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR CCA 90 bp TGTCCCAGGGGCCTCTGTGCTGCCCTCAAGCTAAACAGCCAGAGCTaGCGGGGGCAGCCCGGGAGAGACAGGGATGAACGTGAAGAGCTG +
Preference number: 1 (lower is better)
Translates to: CPRGLCAALKLNSQS*RGQPGRDRDEREEL
Trigger: CAGCTCTTCACGTTCATCCCTGTCTCTCCCGGGCTGCCCCCGCCAGCTCTGGCTGTTTAGCTTGAGGGCAGCACAGAGGCCCCTGGGACA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR CCA 90 bp GAGCAGTGCAACGAGATCACAGACCGAATGACCCCAGTTCACACTTaGTACAAGGAGTGGGGCTGGCCTGGCGAGGGCCGAGCGCGAGGC +
Preference number: 1 (lower is better)
Translates to: EQCNEITDRMTPVHT*YKEWGWPGEGRARG
Trigger: GCCTCGCGCTCGGCCCTCGCCAGGCCAGCCCCACTCCTTGTACCAAGTGTGAACTGGGGTCATTCGGTCTGTGATCTCGTTGCACTGCTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR GCA 90 bp CCCAGGTCTGTGCCCCAAGCCCTCACAAACTGCCTTCCCCATGGCTaGCACTGGAGCAGTGAAAGGGAGGTTGCCCTTTCCCAGGGCAAC +
Preference number: 1 (lower is better)
Translates to: PRSVPQALTNCLPHG*HWSSEREVALSQGN
Trigger: GTTGCCCTGGGAAAGGGCAACCTCCCTTTCACTGCTCCAGTGGCAGCCATGGGGAAGGCAGTTTGTGAGGGCTTGGGGCACAGACCTGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR TCA 90 bp CCAAGCCCTCACAAACTGCCTTCCCCATGGCTGCCACTGGAGCAGTaGAAGGGAGGTTGCCCTTTCCCAGGGCAACAGGCACTGTGCCCA +
Preference number: 1 (lower is better)
Translates to: PSPHKLPSPWLPLEQ*KGGCPFPGQQALCP
Trigger: TGGGCACAGTGCCTGTTGCCCTGGGAAAGGGCAACCTCCCTTTCACTGCTCCAGTGGCAGCCATGGGGAAGGCAGTTTGTGAGGGCTTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR GCA 90 bp AGAGACAGGGATGAACGTGAAGAGCTGCCTCCTGCCCCAGGTCTGTaGCCCAAGCCCTCACAAACTGCCTTCCCCATGGCTGCCACTGGA +
Preference number: 1 (lower is better)
Translates to: RDRDEREELPPAPGL*PKPSQTAFPMAATG
Trigger: TCCAGTGGCAGCCATGGGGAAGGCAGTTTGTGAGGGCTTGGGGCACAGACCTGGGGCAGGAGGCAGCTCTTCACGTTCATCCCTGTCTCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR CCA 90 bp TCTGTGCCCCAAGCCCTCACAAACTGCCTTCCCCATGGCTGCCACTaGAGCAGTGAAAGGGAGGTTGCCCTTTCCCAGGGCAACAGGCAC +
Preference number: 1 (lower is better)
Translates to: SVPQALTNCLPHGCH*SSEREVALSQGNRH
Trigger: GTGCCTGTTGCCCTGGGAAAGGGCAACCTCCCTTTCACTGCTCCAGTGGCAGCCATGGGGAAGGCAGTTTGTGAGGGCTTGGGGCACAGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR TCA 90 bp GGACACAGCCAGACTTGGAGCAGTGCAACGAGATCACAGACCGAATaGCCCCAGTTCACACTTGGTACAAGGAGTGGGGCTGGCCTGGCG +
Preference number: 1 (lower is better)
Translates to: GHSQTWSSATRSQTE*PQFTLGTRSGAGLA
Trigger: CGCCAGGCCAGCCCCACTCCTTGTACCAAGTGTGAACTGGGGTCATTCGGTCTGTGATCTCGTTGCACTGCTCCAAGTCTGGCTGTGTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR CCA 90 bp ACAGGGCAGAAACGTCCAGAGCCAACTCATTCCCAAGGGACCTGTTaGCACCCTTTCTCTCCCAGCCTTAGCCTCCTGGGCCCTAGTCCT +
Preference number: 1 (lower is better)
Translates to: TGQKRPEPTHSQGTC*HPFSPSLSLLGPSP
Trigger: AGGACTAGGGCCCAGGAGGCTAAGGCTGGGAGAGAAAGGGTGCCAACAGGTCCCTTGGGAATGAGTTGGCTCTGGACGTTTCTGCCCTGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR GCA 90 bp ATTAAGGAAAAGGAAGTGGGAGCCGTCTTCATCCCCCAGCTCGCGTaGACCTTGTTCAGAGGGCCAAACGAGAGGTGCTCTGCCTTGGGG +
Preference number: 1 (lower is better)
Translates to: IKEKEVGAVFIPQLA*TLFRGPNERCSALG
Trigger: CCCCAAGGCAGAGCACCTCTCGTTTGGCCCTCTGAACAAGGTGCACGCGAGCTGGGGGATGAAGACGGCTCCCACTTCCTTTTCCTTAAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR CCA 90 bp CCAGCCTTAGCCTCCTGGGCCCTAGTCCTGCTTAGAACAGGAAATTaGAACCAGAGGGTGGAAGGAGAGGAAGCCCCCACAGATGAACCC +
Preference number: 1 (lower is better)
Translates to: PALASWALVLLRTGN*NQRVEGEEAPTDEP
Trigger: GGGTTCATCTGTGGGGGCTTCCTCTCCTTCCACCCTCTGGTTCCAATTTCCTGTTCTAAGCAGGACTAGGGCCCAGGAGGCTAAGGCTGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR CCA 90 bp CCCAAGGGACCTGTTGGCACCCTTTCTCTCCCAGCCTTAGCCTCCTaGGCCCTAGTCCTGCTTAGAACAGGAAATTGGAACCAGAGGGTG +
Preference number: 1 (lower is better)
Translates to: PKGPVGTLSLPALAS*ALVLLRTGNWNQRV
Trigger: CACCCTCTGGTTCCAATTTCCTGTTCTAAGCAGGACTAGGGCCCAGGAGGCTAAGGCTGGGAGAGAAAGGGTGCCAACAGGTCCCTTGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR GCA 90 bp GGGGAAAGAAACTCAGGCCAGCCCCTTCCAGAAACAATCTCAGCCTaGATGCAGGGAGAAAGCAAGTTAGTCTCCTCGGGCCAAGGCCAC +
Preference number: 1 (lower is better)
Translates to: GERNSGQPLPETISA*MQGESKLVSSGQGH
Trigger: GTGGCCTTGGCCCGAGGAGACTAACTTGCTTTCTCCCTGCATGCAGGCTGAGATTGTTTCTGGAAGGGGCTGGCCTGAGTTTCTTTCCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR CCA 90 bp CTGCTCAGCCAGTCAGAAGTCAGCAGCCATCCTCCATTTTCAACATaGACCGCCTGGACACAGCCAGACTTGGAGCAGTGCAACGAGATC +
Preference number: 1 (lower is better)
Translates to: LLSQSEVSSHPPFST*TAWTQPDLEQCNEI
Trigger: GATCTCGTTGCACTGCTCCAAGTCTGGCTGTGTCCAGGCGGTCCATGTTGAAAATGGAGGATGGCTGCTGACTTCTGACTGGCTGAGCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR TCA 90 bp CCGCAGCAGGTGGAAGGGGAGAAAGGGAAGAGTGCTCATGTTTGCTaGTGGTCGATTCTGCCTCCGCCACCATCTGCACTAGATACTTCT +
Preference number: 1 (lower is better)
Translates to: PQQVEGEKGKSAHVC*WSILPPPPSALDTS
Trigger: AGAAGTATCTAGTGCAGATGGTGGCGGAGGCAGAATCGACCATCAGCAAACATGAGCACTCTTCCCTTTCTCCCCTTCCACCTGCTGCGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR CCA 90 bp TCGCGTGCACCTTGTTCAGAGGGCCAAACGAGAGGTGCTCTGCCTTaGGGATACCTGGCTGGGGTGACAAGGATCCTCTTACAATTTTGT +
Preference number: 1 (lower is better)
Translates to: SRAPCSEGQTRGALP*GYLAGVTRILLQFC
Trigger: ACAAAATTGTAAGAGGATCCTTGTCACCCCAGCCAGGTATCCCCAAGGCAGAGCACCTCTCGTTTGGCCCTCTGAACAAGGTGCACGCGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR CCA 90 bp CAGTCAGAAGTCAGCAGCCATCCTCCATTTTCAACATGGACCGCCTaGACACAGCCAGACTTGGAGCAGTGCAACGAGATCACAGACCGA +
Preference number: 1 (lower is better)
Translates to: QSEVSSHPPFSTWTA*TQPDLEQCNEITDR
Trigger: TCGGTCTGTGATCTCGTTGCACTGCTCCAAGTCTGGCTGTGTCCAGGCGGTCCATGTTGAAAATGGAGGATGGCTGCTGACTTCTGACTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR GCA 90 bp CCATTTTCAACATGGACCGCCTGGACACAGCCAGACTTGGAGCAGTaGAACGAGATCACAGACCGAATGACCCCAGTTCACACTTGGTAC +
Preference number: 1 (lower is better)
Translates to: PFSTWTAWTQPDLEQ*NEITDRMTPVHTWY
Trigger: GTACCAAGTGTGAACTGGGGTCATTCGGTCTGTGATCTCGTTGCACTGCTCCAAGTCTGGCTGTGTCCAGGCGGTCCATGTTGAAAATGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR CCA 90 bp GTTGAGCGAAGAACCCCCACCAGGTATGGTTTGAGAGTCCTTAGTTaGTTTTCTTGGGCGTTAGGTAGTAAGAAATCCACCAGGAACCCC +
Preference number: 1 (lower is better)
Translates to: VERRTPTRYGLRVLS*FSWALGSKKSTRNP
Trigger: GGGGTTCCTGGTGGATTTCTTACTACCTAACGCCCAAGAAAACCAACTAAGGACTCTCAAACCATACCTGGTGGGGGTTCTTCGCTCAAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR TCA 90 bp AGGAAATTGGAACCAGAGGGTGGAAGGAGAGGAAGCCCCCACAGATaGACCCCTCTTGTACACACATACACCCACCATATGGTTCTTATT +
Preference number: 1 (lower is better)
Translates to: RKLEPEGGRRGSPHR*TPLVHTYTHHMVLI
Trigger: AATAAGAACCATATGGTGGGTGTATGTGTGTACAAGAGGGGTTCATCTGTGGGGGCTTCCTCTCCTTCCACCCTCTGGTTCCAATTTCCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR TCA 90 bp TGTCACTTGGGCAGATTTGGGTTATCATTCCTCCTTTTGAAGAAGTaGGCAAACAGCCTGCTTTGTTTGGAGAAGTTGTGGGCAGGGGAG +
Preference number: 1 (lower is better)
Translates to: CHLGRFGLSFLLLKK*ANSLLCLEKLWAGE
Trigger: CTCCCCTGCCCACAACTTCTCCAAACAAAGCAGGCTGTTTGCTCACTTCTTCAAAAGGAGGAATGATAACCCAAATCTGCCCAAGTGACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR TCA 90 bp TTTTTCTTGGGACCCTACTTAGTTCCGTGGGCTCCCATTGGGAGCTaGTTAATTTCTGCCAATCAGAACCCATCCCTAACACATCAGATG +
Preference number: 1 (lower is better)
Translates to: FFLGPYLVPWAPIGS*LISANQNPSLTHQM
Trigger: CATCTGATGTGTTAGGGATGGGTTCTGATTGGCAGAAATTAATCAGCTCCCAATGGGAGCCCACGGAACTAAGTAGGGTCCCAAGAAAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR GCA 90 bp ACCCTACTTAGTTCCGTGGGCTCCCATTGGGAGCTGATTAATTTCTaGCAATCAGAACCCATCCCTAACACATCAGATGATAGTGGCTTT +
Preference number: 1 (lower is better)
Translates to: TLLSSVGSHWELINF*QSEPIPNTSDDSGF
Trigger: AAAGCCACTATCATCTGATGTGTTAGGGATGGGTTCTGATTGGCAGAAATTAATCAGCTCCCAATGGGAGCCCACGGAACTAAGTAGGGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR TCA 90 bp TTCTCAAGTGTCACTTGGGCAGATTTGGGTTATCATTCCTCCTTTTaGAGAAGTGAGCAAACAGCCTGCTTTGTTTGGAGAAGTTGTGGG +
Preference number: 1 (lower is better)
Translates to: FSSVTWADLGYHSSF*RSEQTACFVWRSCG
Trigger: CCCACAACTTCTCCAAACAAAGCAGGCTGTTTGCTCACTTCTTCAAAAGGAGGAATGATAACCCAAATCTGCCCAAGTGACACTTGAGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR TCA 90 bp AACATTTTAGAAACGCCAACCACCCCTCCTGAAAGGTTTGAGGAATaGAATTTGGCAGAAGCTCAGCTCTGTGAAATAGCTCCCGTTTTT +
Preference number: 1 (lower is better)
Translates to: NILETPTTPPERFEE*NLAEAQLCEIAPVF
Trigger: AAAAACGGGAGCTATTTCACAGAGCTGAGCTTCTGCCAAATTTCATTCCTCAAACCTTTCAGGAGGGGTGGTTGGCGTTTCTAAAATGTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR CAA 90 bp AGGGCCGAGCGCGAGGCCCTGCAGCTGCGGGGAAAGTGGCCATCTTaGCACGAGCAGGAATGTCCACCACTCCCAGCACTCATCTCAGCC +
Preference number: 2 (lower is better)
Translates to: RAEREALQLRGKWPS*HEQECPPLPALISA
Trigger: GGCTGAGATGAGTGCTGGGAGTGGTGGACATTCCTGCTCGTGCAAAGATGGCCACTTTCCCCGCAGCTGCAGGGCCTCGCGCTCGGCCCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR-3UTR CCA 90 bp GAGGGGCATCCTGCCTGTTTCCTGCAGAGGAGCTCTGATCGGGGAACAGGGCAGCTAAACAGCCAGAGCTaGCGGGGGCAGCCCGGGAGA +
Preference number: 2 (lower is better)
Translates to: EGHPACFLQRSSDRGTGQLNSQS*RGQPGR
Trigger: TCTCCCGGGCTGCCCCCGCCAGCTCTGGCTGTTTAG...CTGCCCTGTTCCCCGATCAGAGCTCCTCTGCAGGAAACAGGCAGGATGCCCCTC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR-3UTR GCA 90 bp GAGGGGCATCCTGCCTGTTTCCTGCAGAGGAGCTCTGATCGGGGAACAGGGCAGCTTTCCTCCAGCAGGTaGCATCAGGGAGCCAGTGGG +
Preference number: 2 (lower is better)
Translates to: EGHPACFLQRSSDRGTGQLSSSR*HQGASG
Trigger: CCCACTGGCTCCCTGATGGCACCTGCTGGAGGAAAG...CTGCCCTGTTCCCCGATCAGAGCTCCTCTGCAGGAAACAGGCAGGATGCCCCTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR-3UTR CCA 90 bp GAGGGGCATCCTGCCTGTTTCCTGCAGAGGAGCTCTGATCGGGGAACAGGGCAGCACTCGCCACCTCGATaGTCCCCTCTTCTCCCTTCC +
Preference number: 2 (lower is better)
Translates to: EGHPACFLQRSSDRGTGQHSPPR*SPLLPS
Trigger: GGAAGGGAGAAGAGGGGACCATCGAGGTGGCGAGTG...CTGCCCTGTTCCCCGATCAGAGCTCCTCTGCAGGAAACAGGCAGGATGCCCCTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR-3UTR CCA 90 bp TTATCCACTCCGCTTGACGTAGGGACTGAGGGGTTGGGAGGGGCATCCTGCCTGGCCACAGCATCACCATaGGGGCTGCAGTCCTGGCAG +
Preference number: 2 (lower is better)
Translates to: LSTPLDVGTEGLGGASCLATASP*GLQSWQ
Trigger: CTGCCAGGACTGCAGCCCCCATGGTGATGCTGTGGC...CAGGCAGGATGCCCCTCCCAACCCCTCAGTCCCTACGTCAAGCGGAGTGGATAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR-3UTR TCA 90 bp AAACGTCCAGAGCCAACTCATTCCCAAGGGACCTGTTGGCACCCTTTCTCTCCCCCCAGCCAAGGGCTGTaGGGGAGGCCGTGCCCCTTT +
Preference number: 2 (lower is better)
Translates to: KRPEPTHSQGTCWHPFSPPSQGL*GRPCPF
Trigger: AAAGGGGCACGGCCTCCCTCACAGCCCTTGGCTGGG...GGGAGAGAAAGGGTGCCAACAGGTCCCTTGGGAATGAGTTGGCTCTGGACGTTT
61% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR-3UTR GCA 90 bp GAGGGGCATCCTGCCTGTTTCCTGCAGAGGAGCTCTGATCGGGGAACAGGGCAGTGCCTTCCCCATGGCTaGCACTGGAGCAGTGAAAGG +
Preference number: 2 (lower is better)
Translates to: EGHPACFLQRSSDRGTGQCLPHG*HWSSER
Trigger: CCTTTCACTGCTCCAGTGGCAGCCATGGGGAAGGCA...CTGCCCTGTTCCCCGATCAGAGCTCCTCTGCAGGAAACAGGCAGGATGCCCCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR-3UTR GCA 90 bp GAGGGGCATCCTGCCTGTTTCCTGCAGAGGAGCTCTGATCGGGGAACAGGGCAGTCCCAGGGGCCTCTGTaGTGCCCTCAAGCTAAACAG +
Preference number: 2 (lower is better)
Translates to: EGHPACFLQRSSDRGTGQSQGPL*CPQAKQ
Trigger: CTGTTTAGCTTGAGGGCAGCACAGAGGCCCCTGGGA...CTGCCCTGTTCCCCGATCAGAGCTCCTCTGCAGGAAACAGGCAGGATGCCCCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR-3UTR GCA 90 bp TCCATTTTCAACATGGACCGCCTGGACACAGCCAGACTTGGAGCAGTGCAACGACCGAGCGCGAGGCCCTaGAGCTGCGGGGAAAGTGGC +
Preference number: 2 (lower is better)
Translates to: SIFNMDRLDTARLGAVQRPSARP*SCGESG
Trigger: GCCACTTTCCCCGCAGCTGCAGGGCCTCGCGCTCGG...TCGTTGCACTGCTCCAAGTCTGGCTGTGTCCAGGCGGTCCATGTTGAAAATGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR-3UTR CCA 90 bp AAACGTCCAGAGCCAACTCATTCCCAAGGGACCTGTTGGCACCCTTTCTCTCCCCCCCACGTGGCGGGGTaGGGAGTTGAGCTCCCTCTC +
Preference number: 2 (lower is better)
Translates to: KRPEPTHSQGTCWHPFSPPHVAG*GVELPL
Trigger: GAGAGGGAGCTCAACTCCCCACCCCGCCACGTGGGG...GGGAGAGAAAGGGTGCCAACAGGTCCCTTGGGAATGAGTTGGCTCTGGACGTTT
61% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR-3UTR GCA 90 bp GTCCAGAGCCAACTCATTCCCAAGGGACCTGTTGGCACCCTTTCTCTCCCAGCCATCCCCCAGCTCGCGTaGACCTTGTTCAGAGGGCCA +
Preference number: 2 (lower is better)
Translates to: VQSQLIPKGPVGTLSLPAIPQLA*TLFRGP
Trigger: TGGCCCTCTGAACAAGGTGCACGCGAGCTGGGGGAT...GGCTGGGAGAGAAAGGGTGCCAACAGGTCCCTTGGGAATGAGTTGGCTCTGGAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR-3UTR CCA 90 bp CTAGACACTTCACAGAGGTTGATCTTTCTGGCCTGTAGGTGTCCCAGGGGCCTCGGACTCACAAGGGGCTaGGCTGTGTGCCTCAGGGCC +
Preference number: 2 (lower is better)
Translates to: LDTSQRLIFLACRCPRGLGLTRG*AVCLRA
Trigger: GGCCCTGAGGCACACAGCCCAGCCCCTTGTGAGTCC...GAGGCCCCTGGGACACCTACAGGCCAGAAAGATCAACCTCTGTGAAGTGTCTAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR-3UTR CCA 90 bp AGTCAGAAGTCAGCAGCCATCCTCCATTTTCAACATGGACCGCCTGGACACAGCCCCCACGTGGCGGGGTaGGGAGTTGAGCTCCCTCTC +
Preference number: 2 (lower is better)
Translates to: SQKSAAILHFQHGPPGHSPHVAG*GVELPL
Trigger: GAGAGGGAGCTCAACTCCCCACCCCGCCACGTGGGG...GCTGTGTCCAGGCGGTCCATGTTGAAAATGGAGGATGGCTGCTGACTTCTGACT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR-3UTR TCA 90 bp TCCATTTTCAACATGGACCGCCTGGACACAGCCAGACTTGGAGCAGTGCAACGAGGCGGGGTGGGGAGTTaGGCTCCCTCTCAGCTCCTT +
Preference number: 2 (lower is better)
Translates to: SIFNMDRLDTARLGAVQRGGVGS*APSQLL
Trigger: AAGGAGCTGAGAGGGAGCTCAACTCCCCACCCCGCC...TCGTTGCACTGCTCCAAGTCTGGCTGTGTCCAGGCGGTCCATGTTGAAAATGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR-3UTR GCA 90 bp GAAGTCAGCAGCCATCCTCCATTTTCAACATGGACCGCCTGGACACAGCCAGACCATCACCATGGGGGCTaGAGTCCTGGCAGGGTGTCC +
Preference number: 2 (lower is better)
Translates to: EVSSHPPFSTWTAWTQPDHHHGG*SPGRVS
Trigger: GGACACCCTGCCAGGACTGCAGCCCCCATGGTGATG...GTCTGGCTGTGTCCAGGCGGTCCATGTTGAAAATGGAGGATGGCTGCTGACTTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR-3UTR CCA 90 bp ACTTCACAGAGGTTGATCTTTCTGGCCTGTAGGTGTCCCAGGGGCCTCTGTGCTCCATCAGGGAGCCAGTaGGAAGGGCTGTCTCCCCAC +
Preference number: 2 (lower is better)
Translates to: TSQRLIFLACRCPRGLCAPSGSQ*EGLSPH
Trigger: GTGGGGAGACAGCCCTTCCCACTGGCTCCCTGATGG...AGCACAGAGGCCCCTGGGACACCTACAGGCCAGAAAGATCAACCTCTGTGAAGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR-3UTR CCA 90 bp TCCATTTTCAACATGGACCGCCTGGACACAGCCAGACTTGGAGCAGTGCAACGATGGGGGCTGCAGTCCTaGCAGGGTGTCCACACTCGC +
Preference number: 2 (lower is better)
Translates to: SIFNMDRLDTARLGAVQRWGLQS*QGVHTR
Trigger: GCGAGTGTGGACACCCTGCCAGGACTGCAGCCCCCA...TCGTTGCACTGCTCCAAGTCTGGCTGTGTCCAGGCGGTCCATGTTGAAAATGGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR-3UTR CCA 90 bp TCCATTTTCAACATGGACCGCCTGGACACAGCCAGACTTGGAGCAGTGCAACGACTAAACAGCCAGAGCTaGCGGGGGCAGCCCGGGAGA +
Preference number: 2 (lower is better)
Translates to: SIFNMDRLDTARLGAVQRLNSQS*RGQPGR
Trigger: TCTCCCGGGCTGCCCCCGCCAGCTCTGGCTGTTTAG...TCGTTGCACTGCTCCAAGTCTGGCTGTGTCCAGGCGGTCCATGTTGAAAATGGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR-3UTR GCA 90 bp CTAGACACTTCACAGAGGTTGATCTTTCTGGCCTGTAGGTGTCCCAGGGGCCTCGGGCAACAGGCACTGTaGCCACCACGGACATGTCTG +
Preference number: 2 (lower is better)
Translates to: LDTSQRLIFLACRCPRGLGQQAL*PPRTCL
Trigger: CAGACATGTCCGTGGTGGGCACAGTGCCTGTTGCCC...GAGGCCCCTGGGACACCTACAGGCCAGAAAGATCAACCTCTGTGAAGTGTCTAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR-3UTR GCA 90 bp GTCCAGAGCCAACTCATTCCCAAGGGACCTGTTGGCACCCTTTCTCTCCCAGCCAAACGAGAGGTGCTCTaGCTTGGGGATACCTGGCTG +
Preference number: 2 (lower is better)
Translates to: VQSQLIPKGPVGTLSLPAKREVL*LGDTWL
Trigger: CAGCCAGGTATCCCCAAGGCAGAGCACCTCTCGTTT...GGCTGGGAGAGAAAGGGTGCCAACAGGTCCCTTGGGAATGAGTTGGCTCTGGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR-3UTR GCA 90 bp TCCATTTTCAACATGGACCGCCTGGACACAGCCAGACTTGGAGCAGTGCAACGAGCGAGGCCCTGCAGCTaGGGGGAAAGTGGCCATCTT +
Preference number: 2 (lower is better)
Translates to: SIFNMDRLDTARLGAVQRARPCS*GESGHL
Trigger: AAGATGGCCACTTTCCCCGCAGCTGCAGGGCCTCGC...TCGTTGCACTGCTCCAAGTCTGGCTGTGTCCAGGCGGTCCATGTTGAAAATGGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR-3UTR CCA 90 bp GAAGTCAGCAGCCATCCTCCATTTTCAACATGGACCGCCTGGACACAGCCAGACCCAGCCCGCAGCAGGTaGAAGGGGAGAAAGGGAAGA +
Preference number: 2 (lower is better)
Translates to: EVSSHPPFSTWTAWTQPDPARSR*KGRKGR
Trigger: TCTTCCCTTTCTCCCCTTCCACCTGCTGCGGGCTGG...GTCTGGCTGTGTCCAGGCGGTCCATGTTGAAAATGGAGGATGGCTGCTGACTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR-3UTR CCA 90 bp AAACGTCCAGAGCCAACTCATTCCCAAGGGACCTGTTGGCACCCTTTCTCTCCCAGAGGTGCTCTGCCTTaGGGATACCTGGCTGGGGTG +
Preference number: 2 (lower is better)
Translates to: KRPEPTHSQGTCWHPFSPRGALP*GYLAGV
Trigger: CACCCCAGCCAGGTATCCCCAAGGCAGAGCACCTCT...GGGAGAGAAAGGGTGCCAACAGGTCCCTTGGGAATGAGTTGGCTCTGGACGTTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR-3UTR CCA 90 bp TCCATTTTCAACATGGACCGCCTGGACACAGCCAGACTTGGAGCAGTGCAACGAACTTGGTACAAGGAGTaGGGCTGGCCTGGCGAGGGC +
Preference number: 2 (lower is better)
Translates to: SIFNMDRLDTARLGAVQRTWYKE*GWPGEG
Trigger: GCCCTCGCCAGGCCAGCCCCACTCCTTGTACCAAGT...TCGTTGCACTGCTCCAAGTCTGGCTGTGTCCAGGCGGTCCATGTTGAAAATGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR CAA 90 bp CAGCCCGCAGCAGGTGGAAGGGGAGAAAGGGAAGAGTGCTCATGTTaGCTGATGGTCGATTCTGCCTCCGCCACCATCTGCACTAGATAC +
Preference number: 2 (lower is better)
Translates to: QPAAGGRGEREECSC*LMVDSASATICTRY
Trigger: GTATCTAGTGCAGATGGTGGCGGAGGCAGAATCGACCATCAGCAAACATGAGCACTCTTCCCTTTCTCCCCTTCCACCTGCTGCGGGCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR-3UTR TCA 90 bp CCTTCAGGGCCCAGCAGAGGCCAGGACTCACAAGGGGCTGGGCTGTGTGCCTCAGAGGTTCTTTGTAATTaGAAAGGTCGCTCTACCACT +
Preference number: 2 (lower is better)
Translates to: PSGPSRGQDSQGAGLCASEVLCN*KGRSTT
Trigger: AGTGGTAGAGCGACCTTTTCAATTACAAAGAACCTC...TGAGGCACACAGCCCAGCCCCTTGTGAGTCCTGGCCTCTGCTGGGCCCTGAAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR-3UTR GCA 90 bp ATCCTCCATTTTCAACATGGACCGCCTGGACACAGCCAGACTTGGAGCAGTGCATCAGGGCCTATGGGGTaGAGCCCTGACACTGCACAG +
Preference number: 2 (lower is better)
Translates to: ILHFQHGPPGHSQTWSSASGPMG*SPDTAQ
Trigger: CTGTGCAGTGTCAGGGCTGCACCCCATAGGCCCTGA...TGCACTGCTCCAAGTCTGGCTGTGTCCAGGCGGTCCATGTTGAAAATGGAGGAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR-3UTR GCA 90 bp AGTCAGAAGTCAGCAGCCATCCTCCATTTTCAACATGGACCGCCTGGACACAGCCTTTCCTCCAGCAGGTaGCATCAGGGAGCCAGTGGG +
Preference number: 2 (lower is better)
Translates to: SQKSAAILHFQHGPPGHSLSSSR*HQGASG
Trigger: CCCACTGGCTCCCTGATGGCACCTGCTGGAGGAAAG...GCTGTGTCCAGGCGGTCCATGTTGAAAATGGAGGATGGCTGCTGACTTCTGACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR-3UTR GCA 90 bp CTAGACACTTCACAGAGGTTGATCTTTCTGGCCTGTAGGTGTCCCAGGGGCCTCTGCCTTCCCCATGGCTaGCACTGGAGCAGTGAAAGG +
Preference number: 2 (lower is better)
Translates to: LDTSQRLIFLACRCPRGLCLPHG*HWSSER
Trigger: CCTTTCACTGCTCCAGTGGCAGCCATGGGGAAGGCA...GAGGCCCCTGGGACACCTACAGGCCAGAAAGATCAACCTCTGTGAAGTGTCTAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR-3UTR GCA 90 bp CTAGACACTTCACAGAGGTTGATCTTTCTGGCCTGTAGGTGTCCCAGGGGCCTCCAAGCCCTCACAAACTaGCTTCCCCATGGCTGCCAC +
Preference number: 2 (lower is better)
Translates to: LDTSQRLIFLACRCPRGLQALTN*LPHGCH
Trigger: GTGGCAGCCATGGGGAAGGCAGTTTGTGAGGGCTTG...GAGGCCCCTGGGACACCTACAGGCCAGAAAGATCAACCTCTGTGAAGTGTCTAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR-3UTR CCA 90 bp ACTTCACAGAGGTTGATCTTTCTGGCCTGTAGGTGTCCCAGGGGCCTCTGTGCTTCCACTGTCATATGCTaGAGGTCCCAGGGGGAGCTG +
Preference number: 2 (lower is better)
Translates to: TSQRLIFLACRCPRGLCASTVIC*RSQGEL
Trigger: CAGCTCCCCCTGGGACCTCCAGCATATGACAGTGGA...AGCACAGAGGCCCCTGGGACACCTACAGGCCAGAAAGATCAACCTCTGTGAAGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR-3UTR CCA 90 bp ACTTCACAGAGGTTGATCTTTCTGGCCTGTAGGTGTCCCAGGGGCCTCTGTGCTCCCCATGGCTGCCACTaGAGCAGTGAAAGGGAGGTT +
Preference number: 2 (lower is better)
Translates to: TSQRLIFLACRCPRGLCAPHGCH*SSEREV
Trigger: AACCTCCCTTTCACTGCTCCAGTGGCAGCCATGGGG...AGCACAGAGGCCCCTGGGACACCTACAGGCCAGAAAGATCAACCTCTGTGAAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR-3UTR TCA 90 bp ACTTCACAGAGGTTGATCTTTCTGGCCTGTAGGTGTCCCAGGGGCCTCTGTGCTTATGGGGTGCAGCCCTaGCACTGCACAGACATTTGG +
Preference number: 2 (lower is better)
Translates to: TSQRLIFLACRCPRGLCAYGVQP*HCTDIW
Trigger: CCAAATGTCTGTGCAGTGTCAGGGCTGCACCCCATA...AGCACAGAGGCCCCTGGGACACCTACAGGCCAGAAAGATCAACCTCTGTGAAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR-3UTR GCA 90 bp ATCCTCCATTTTCAACATGGACCGCCTGGACACAGCCAGACTTGGAGCAGTGCAGCTGATGGTCGATTCTaGCTCCGCCACCATCTGCAC +
Preference number: 2 (lower is better)
Translates to: ILHFQHGPPGHSQTWSSAADGRF*LRHHLH
Trigger: GTGCAGATGGTGGCGGAGGCAGAATCGACCATCAGC...TGCACTGCTCCAAGTCTGGCTGTGTCCAGGCGGTCCATGTTGAAAATGGAGGAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR-3UTR GCA 90 bp TCCATTTTCAACATGGACCGCCTGGACACAGCCAGACTTGGAGCAGTGCAACGAGGGCCAAACGAGAGGTaGTCTGCCTTGGGGATACCT +
Preference number: 2 (lower is better)
Translates to: SIFNMDRLDTARLGAVQRGPNER*SALGIP
Trigger: AGGTATCCCCAAGGCAGAGCACCTCTCGTTTGGCCC...TCGTTGCACTGCTCCAAGTCTGGCTGTGTCCAGGCGGTCCATGTTGAAAATGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR-3UTR GCA 90 bp AGTCAGAAGTCAGCAGCCATCCTCCATTTTCAACATGGACCGCCTGGACACAGCGGGCCAAACGAGAGGTaGTCTGCCTTGGGGATACCT +
Preference number: 2 (lower is better)
Translates to: SQKSAAILHFQHGPPGHSGPNER*SALGIP
Trigger: AGGTATCCCCAAGGCAGAGCACCTCTCGTTTGGCCC...GCTGTGTCCAGGCGGTCCATGTTGAAAATGGAGGATGGCTGCTGACTTCTGACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR-3UTR GCA 90 bp ATCCTCCATTTTCAACATGGACCGCCTGGACACAGCCAGACTTGGAGCAGTGCATTGGGAGGGGCATCCTaGCTGTTTCCTGCAGAGGAG +
Preference number: 2 (lower is better)
Translates to: ILHFQHGPPGHSQTWSSALGGAS*LFPAEE
Trigger: CTCCTCTGCAGGAAACAGGCAGGATGCCCCTCCCAA...TGCACTGCTCCAAGTCTGGCTGTGTCCAGGCGGTCCATGTTGAAAATGGAGGAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR-3UTR CCA 90 bp ATCCTCCATTTTCAACATGGACCGCCTGGACACAGCCAGACTTGGAGCAGTGCATCCACTGTCATATGCTaGAGGTCCCAGGGGGAGCTG +
Preference number: 2 (lower is better)
Translates to: ILHFQHGPPGHSQTWSSASTVIC*RSQGEL
Trigger: CAGCTCCCCCTGGGACCTCCAGCATATGACAGTGGA...TGCACTGCTCCAAGTCTGGCTGTGTCCAGGCGGTCCATGTTGAAAATGGAGGAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR-3UTR CCA 90 bp TCCATTTTCAACATGGACCGCCTGGACACAGCCAGACTTGGAGCAGTGCAACGACCAGCCTTAGCCTCCTaGGCCCTAGTCCTGCTTAGA +
Preference number: 2 (lower is better)
Translates to: SIFNMDRLDTARLGAVQRPALAS*ALVLLR
Trigger: TCTAAGCAGGACTAGGGCCCAGGAGGCTAAGGCTGG...TCGTTGCACTGCTCCAAGTCTGGCTGTGTCCAGGCGGTCCATGTTGAAAATGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR CAA 90 bp AGCCATCCTCCATTTTCAACATGGACCGCCTGGACACAGCCAGACTaGGAGCAGTGCAACGAGATCACAGACCGAATGACCCCAGTTCAC +
Preference number: 2 (lower is better)
Translates to: SHPPFSTWTAWTQPD*EQCNEITDRMTPVH
Trigger: GTGAACTGGGGTCATTCGGTCTGTGATCTCGTTGCACTGCTCCAAGTCTGGCTGTGTCCAGGCGGTCCATGTTGAAAATGGAGGATGGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR-3UTR TCA 90 bp ATCCTCCATTTTCAACATGGACCGCCTGGACACAGCCAGACTTGGAGCAGTGCATATGGGGTGCAGCCCTaGCACTGCACAGACATTTGG +
Preference number: 2 (lower is better)
Translates to: ILHFQHGPPGHSQTWSSAYGVQP*HCTDIW
Trigger: CCAAATGTCTGTGCAGTGTCAGGGCTGCACCCCATA...TGCACTGCTCCAAGTCTGGCTGTGTCCAGGCGGTCCATGTTGAAAATGGAGGAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR-3UTR TCA 90 bp TTATCCACTCCGCTTGACGTAGGGACTGAGGGGTTGGGAGGGGCATCCTGCCTGCTTACAATTTTGTATTaGGAAAACCAGCCCAGCCCG +
Preference number: 2 (lower is better)
Translates to: LSTPLDVGTEGLGGASCLLTILY*ENQPSP
Trigger: CGGGCTGGGCTGGTTTTCTCAATACAAAATTGTAAG...CAGGCAGGATGCCCCTCCCAACCCCTCAGTCCCTACGTCAAGCGGAGTGGATAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR-3UTR TCA 90 bp AGTCAGAAGTCAGCAGCCATCCTCCATTTTCAACATGGACCGCCTGGACACAGCGGAAGCCCCCACAGATaGACCCCTCTTGTACACACA +
Preference number: 2 (lower is better)
Translates to: SQKSAAILHFQHGPPGHSGSPHR*TPLVHT
Trigger: TGTGTGTACAAGAGGGGTTCATCTGTGGGGGCTTCC...GCTGTGTCCAGGCGGTCCATGTTGAAAATGGAGGATGGCTGCTGACTTCTGACT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR-3UTR TCA 90 bp ATCCTCCATTTTCAACATGGACCGCCTGGACACAGCCAGACTTGGAGCAGTGCAGGAAGCCCCCACAGATaGACCCCTCTTGTACACACA +
Preference number: 2 (lower is better)
Translates to: ILHFQHGPPGHSQTWSSAGSPHR*TPLVHT
Trigger: TGTGTGTACAAGAGGGGTTCATCTGTGGGGGCTTCC...TGCACTGCTCCAAGTCTGGCTGTGTCCAGGCGGTCCATGTTGAAAATGGAGGAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR-3UTR GCA 90 bp ATCCTCCATTTTCAACATGGACCGCCTGGACACAGCCAGACTTGGAGCAGTGCAATGAACGTGAAGAGCTaGCTCCTGCCCCAGGTCTGT +
Preference number: 2 (lower is better)
Translates to: ILHFQHGPPGHSQTWSSAMNVKS*LLPQVC
Trigger: ACAGACCTGGGGCAGGAGGCAGCTCTTCACGTTCAT...TGCACTGCTCCAAGTCTGGCTGTGTCCAGGCGGTCCATGTTGAAAATGGAGGAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR-3UTR CCA 90 bp AATTTCTGCCAATCAGAACCCATCCCTAACACATCAGATGATAGTGGCTTTGACGGTCCCAGGGGGAGCTaGAGGAGCCCCAGCCAAGGG +
Preference number: 2 (lower is better)
Translates to: NFCQSEPIPNTSDDSGFDGPRGS*RSPSQG
Trigger: CCCTTGGCTGGGGCTCCTCCAGCTCCCCCTGGGACC...GTCAAAGCCACTATCATCTGATGTGTTAGGGATGGGTTCTGATTGGCAGAAATT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR-3UTR CCA 90 bp AGTCAGAAGTCAGCAGCCATCCTCCATTTTCAACATGGACCGCCTGGACACAGCACCCCAGTTCACACTTaGTACAAGGAGTGGGGCTGG +
Preference number: 2 (lower is better)
Translates to: SQKSAAILHFQHGPPGHSTPVHT*YKEWGW
Trigger: CCAGCCCCACTCCTTGTACCAAGTGTGAACTGGGGT...GCTGTGTCCAGGCGGTCCATGTTGAAAATGGAGGATGGCTGCTGACTTCTGACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR-3UTR CCA 90 bp ACCATATGGTTCTTATTAAGGAAAAGGAAGTGGGAGCCGTCTTCATCCCCCAGCCACTCGCCACCTCGATaGTCCCCTCTTCTCCCTTCC +
Preference number: 2 (lower is better)
Translates to: TIWFLLRKRKWEPSSSPSHSPPR*SPLLPS
Trigger: GGAAGGGAGAAGAGGGGACCATCGAGGTGGCGAGTG...GCTGGGGGATGAAGACGGCTCCCACTTCCTTTTCCTTAATAAGAACCATATGGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR-3UTR TCA 90 bp AAACGTCCAGAGCCAACTCATTCCCAAGGGACCTGTTGGCACCCTTTCTCTCCCACACTTCACAGAGGTTaGTCTTTCTGGCCTGTAGGT +
Preference number: 2 (lower is better)
Translates to: KRPEPTHSQGTCWHPFSPTLHRG*SFWPVG
Trigger: ACCTACAGGCCAGAAAGATCAACCTCTGTGAAGTGT...GGGAGAGAAAGGGTGCCAACAGGTCCCTTGGGAATGAGTTGGCTCTGGACGTTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR-3UTR TCA 90 bp GAAGTCAGCAGCCATCCTCCATTTTCAACATGGACCGCCTGGACACAGCCAGACACACTTCACAGAGGTTaGTCTTTCTGGCCTGTAGGT +
Preference number: 2 (lower is better)
Translates to: EVSSHPPFSTWTAWTQPDTLHRG*SFWPVG
Trigger: ACCTACAGGCCAGAAAGATCAACCTCTGTGAAGTGT...GTCTGGCTGTGTCCAGGCGGTCCATGTTGAAAATGGAGGATGGCTGCTGACTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR-3UTR TCA 90 bp AGTCAGAAGTCAGCAGCCATCCTCCATTTTCAACATGGACCGCCTGGACACAGCGATACCTGGCTGGGGTaGCAAGGATCCTCTTACAAT +
Preference number: 2 (lower is better)
Translates to: SQKSAAILHFQHGPPGHSDTWLG*QGSSYN
Trigger: ATTGTAAGAGGATCCTTGTCACCCCAGCCAGGTATC...GCTGTGTCCAGGCGGTCCATGTTGAAAATGGAGGATGGCTGCTGACTTCTGACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR-3UTR GCA 90 bp CCACCATCTGCACTAGATACTTCTAGACACTTCACAGAGGTTGATCTTTCTGGCTCAGGGCCTATGGGGTaGAGCCCTGACACTGCACAG +
Preference number: 2 (lower is better)
Translates to: PPSALDTSRHFTEVDLSGSGPMG*SPDTAQ
Trigger: CTGTGCAGTGTCAGGGCTGCACCCCATAGGCCCTGA...GCCAGAAAGATCAACCTCTGTGAAGTGTCTAGAAGTATCTAGTGCAGATGGTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR-3UTR GCA 90 bp ACCATATGGTTCTTATTAAGGAAAAGGAAGTGGGAGCCGTCTTCATCCCCCAGCTCCCAGGGGCCTCTGTaGTGCCCTCAAGCTAAACAG +
Preference number: 2 (lower is better)
Translates to: TIWFLLRKRKWEPSSSPSSQGPL*CPQAKQ
Trigger: CTGTTTAGCTTGAGGGCAGCACAGAGGCCCCTGGGA...GCTGGGGGATGAAGACGGCTCCCACTTCCTTTTCCTTAATAAGAACCATATGGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR-3UTR CCA 90 bp ATGGTTCTTATTAAGGAAAAGGAAGTGGGAGCCGTCTTCATCCCCCAGCTCGCGTTGGGGATACCTGGCTaGGGTGACAAGGATCCTCTT +
Preference number: 2 (lower is better)
Translates to: MVLIKEKEVGAVFIPQLALGIPG*GDKDPL
Trigger: AAGAGGATCCTTGTCACCCCAGCCAGGTATCCCCAA...CGCGAGCTGGGGGATGAAGACGGCTCCCACTTCCTTTTCCTTAATAAGAACCAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR-3UTR TCA 90 bp ATACTTCTAGACACTTCACAGAGGTTGATCTTTCTGGCCTGTAGGTGTCCCAGGCACCACGGACATGTCTaGTGCCACAGCATCACCATG +
Preference number: 2 (lower is better)
Translates to: ILLDTSQRLIFLACRCPRHHGHV*CHSITM
Trigger: CATGGTGATGCTGTGGCATCAGACATGTCCGTGGTG...CCTGGGACACCTACAGGCCAGAAAGATCAACCTCTGTGAAGTGTCTAGAAGTAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR-3UTR GCA 90 bp ACCATATGGTTCTTATTAAGGAAAAGGAAGTGGGAGCCGTCTTCATCCCCCAGCAAACGAGAGGTGCTCTaGCTTGGGGATACCTGGCTG +
Preference number: 2 (lower is better)
Translates to: TIWFLLRKRKWEPSSSPSKREVL*LGDTWL
Trigger: CAGCCAGGTATCCCCAAGGCAGAGCACCTCTCGTTT...GCTGGGGGATGAAGACGGCTCCCACTTCCTTTTCCTTAATAAGAACCATATGGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR-3UTR TCA 90 bp CCACCATCTGCACTAGATACTTCTAGACACTTCACAGAGGTTGATCTTTCTGGCCACCACGGACATGTCTaGTGCCACAGCATCACCATG +
Preference number: 2 (lower is better)
Translates to: PPSALDTSRHFTEVDLSGHHGHV*CHSITM
Trigger: CATGGTGATGCTGTGGCATCAGACATGTCCGTGGTG...GCCAGAAAGATCAACCTCTGTGAAGTGTCTAGAAGTATCTAGTGCAGATGGTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR-3UTR TCA 90 bp AGTCAGAAGTCAGCAGCCATCCTCCATTTTCAACATGGACCGCCTGGACACAGCCTTACAATTTTGTATTaGGAAAACCAGCCCAGCCCG +
Preference number: 2 (lower is better)
Translates to: SQKSAAILHFQHGPPGHSLTILY*ENQPSP
Trigger: CGGGCTGGGCTGGTTTTCTCAATACAAAATTGTAAG...GCTGTGTCCAGGCGGTCCATGTTGAAAATGGAGGATGGCTGCTGACTTCTGACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR-3UTR TCA 90 bp ACCATATGGTTCTTATTAAGGAAAAGGAAGTGGGAGCCGTCTTCATCCCCCAGCGATACCTGGCTGGGGTaGCAAGGATCCTCTTACAAT +
Preference number: 2 (lower is better)
Translates to: TIWFLLRKRKWEPSSSPSDTWLG*QGSSYN
Trigger: ATTGTAAGAGGATCCTTGTCACCCCAGCCAGGTATC...GCTGGGGGATGAAGACGGCTCCCACTTCCTTTTCCTTAATAAGAACCATATGGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR CAA 90 bp CCTAGGGAAGAAGAGGTTGAGCGAAGAACCCCCACCAGGTATGGTTaGAGAGTCCTTAGTTGGTTTTCTTGGGCGTTAGGTAGTAAGAAA +
Preference number: 2 (lower is better)
Translates to: PREEEVERRTPTRYG*RVLSWFSWALGSKK
Trigger: TTTCTTACTACCTAACGCCCAAGAAAACCAACTAAGGACTCTCAAACCATACCTGGTGGGGGTTCTTCGCTCAACCTCTTCTTCCCTAGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR-3UTR GCA 90 bp ACCATATGGTTCTTATTAAGGAAAAGGAAGTGGGAGCCGTCTTCATCCCCCAGCGAAACAATCTCAGCCTaGATGCAGGGAGAAAGCAAG +
Preference number: 2 (lower is better)
Translates to: TIWFLLRKRKWEPSSSPSETISA*MQGESK
Trigger: CTTGCTTTCTCCCTGCATGCAGGCTGAGATTGTTTC...GCTGGGGGATGAAGACGGCTCCCACTTCCTTTTCCTTAATAAGAACCATATGGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR-3UTR GCA 90 bp AATTTCTGCCAATCAGAACCCATCCCTAACACATCAGATGATAGTGGCTTTGACATGAACGTGAAGAGCTaGCTCCTGCCCCAGGTCTGT +
Preference number: 2 (lower is better)
Translates to: NFCQSEPIPNTSDDSGFDMNVKS*LLPQVC
Trigger: ACAGACCTGGGGCAGGAGGCAGCTCTTCACGTTCAT...GTCAAAGCCACTATCATCTGATGTGTTAGGGATGGGTTCTGATTGGCAGAAATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR-3UTR GCA 90 bp TGTAGAGAGCTAAGCTTCCTATACCAAGTTAGAAGTGAAATGACTAGTGGAAAAATCCCCCAGCTCGCGTaGACCTTGTTCAGAGGGCCA +
Preference number: 2 (lower is better)
Translates to: CRELSFLYQVRSEMTSGKIPQLA*TLFRGP
Trigger: TGGCCCTCTGAACAAGGTGCACGCGAGCTGGGGGAT...TTTTCCACTAGTCATTTCACTTCTAACTTGGTATAGGAAGCTTAGCTCTCTACA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR-3UTR CCA 90 bp TCCATTTTCAACATGGACCGCCTGGACACAGCCAGACTTGGAGCAGTGCAACGACATACACCCACCATATaGTTCTTATTAAGGAAAAGG +
Preference number: 2 (lower is better)
Translates to: SIFNMDRLDTARLGAVQRHTPTI*FLLRKR
Trigger: CCTTTTCCTTAATAAGAACCATATGGTGGGTGTATG...TCGTTGCACTGCTCCAAGTCTGGCTGTGTCCAGGCGGTCCATGTTGAAAATGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR-3UTR TCA 90 bp ATACTTCTAGACACTTCACAGAGGTTGATCTTTCTGGCCTGTAGGTGTCCCAGGGAGGTTCTTTGTAATTaGAAAGGTCGCTCTACCACT +
Preference number: 2 (lower is better)
Translates to: ILLDTSQRLIFLACRCPREVLCN*KGRSTT
Trigger: AGTGGTAGAGCGACCTTTTCAATTACAAAGAACCTC...CCTGGGACACCTACAGGCCAGAAAGATCAACCTCTGTGAAGTGTCTAGAAGTAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR-3UTR GCA 90 bp TGTAGAGAGCTAAGCTTCCTATACCAAGTTAGAAGTGAAATGACTAGTGGAAAACAAGCCCTCACAAACTaGCTTCCCCATGGCTGCCAC +
Preference number: 2 (lower is better)
Translates to: CRELSFLYQVRSEMTSGKQALTN*LPHGCH
Trigger: GTGGCAGCCATGGGGAAGGCAGTTTGTGAGGGCTTG...TTTTCCACTAGTCATTTCACTTCTAACTTGGTATAGGAAGCTTAGCTCTCTACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR-3UTR GCA 90 bp TGTAGAGAGCTAAGCTTCCTATACCAAGTTAGAAGTGAAATGACTAGTGGAAAAGCTGATGGTCGATTCTaGCTCCGCCACCATCTGCAC +
Preference number: 2 (lower is better)
Translates to: CRELSFLYQVRSEMTSGKADGRF*LRHHLH
Trigger: GTGCAGATGGTGGCGGAGGCAGAATCGACCATCAGC...TTTTCCACTAGTCATTTCACTTCTAACTTGGTATAGGAAGCTTAGCTCTCTACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR-3UTR TCA 90 bp AATTTCTGCCAATCAGAACCCATCCCTAACACATCAGATGATAGTGGCTTTGACCCACCAGGTATGGTTTaGGAGTCCTTAGTTGGTTTT +
Preference number: 2 (lower is better)
Translates to: NFCQSEPIPNTSDDSGFDPPGMV*ESLVGF
Trigger: AAAACCAACTAAGGACTCTCAAACCATACCTGGTGG...GTCAAAGCCACTATCATCTGATGTGTTAGGGATGGGTTCTGATTGGCAGAAATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR CCA 72 bp CCCAGTTCACACTTGGTACAAGGAGTGGGGCTGGCCTaGCGAGGGCCGAGCGCGAGGCCCTGCAGCTGCGGG +
Preference number: 3 (lower is better)
Translates to: PSSHLVQGVGLA*RGPSARPCSCG
Trigger: CCCGCAGCTGCAGGGCCTCGCGCTCGGCCCTCGCCAGGCCAGCCCCACTCCTTGTACCAAGTGTGAACTGGG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR-3UTR CAA 90 bp GGCTGCAGTCCTGGCAGGGTGTCCACACTCGCCACCTCGATGGTCCCCTCTTCTTGGCGGGGTGGGGAGTaGAGCTCCCTCTCAGCTCCT +
Preference number: 3 (lower is better)
Translates to: GCSPGRVSTLATSMVPSSWRGGE*SSLSAP
Trigger: AGGAGCTGAGAGGGAGCTCAACTCCCCACCCCGCCA...AGAAGAGGGGACCATCGAGGTGGCGAGTGTGGACACCCTGCCAGGACTGCAGCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR CCA 72 bp GGCCTCTGTGCTGCCCTCAAGCTAAACAGCCAGAGCTaGCGGGGGCAGCCCGGGAGAGACAGGGATGAACGT +
Preference number: 3 (lower is better)
Translates to: GLCAALKLNSQS*RGQPGRDRDER
Trigger: ACGTTCATCCCTGTCTCTCCCGGGCTGCCCCCGCCAGCTCTGGCTGTTTAGCTTGAGGGCAGCACAGAGGCC
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR-3UTR CAA 90 bp TTATCCACTCCGCTTGACGTAGGGACTGAGGGGTTGGGAGGGGCATCCTGCCTGTGGCGGGGTGGGGAGTaGAGCTCCCTCTCAGCTCCT +
Preference number: 3 (lower is better)
Translates to: LSTPLDVGTEGLGGASCLWRGGE*SSLSAP
Trigger: AGGAGCTGAGAGGGAGCTCAACTCCCCACCCCGCCA...CAGGCAGGATGCCCCTCCCAACCCCTCAGTCCCTACGTCAAGCGGAGTGGATAA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR GCA 72 bp GTGCCCCAAGCCCTCACAAACTGCCTTCCCCATGGCTaGCACTGGAGCAGTGAAAGGGAGGTTGCCCTTTCC +
Preference number: 3 (lower is better)
Translates to: VPQALTNCLPHG*HWSSEREVALS
Trigger: GGAAAGGGCAACCTCCCTTTCACTGCTCCAGTGGCAGCCATGGGGAAGGCAGTTTGTGAGGGCTTGGGGCAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR GCA 72 bp CTCGCGTGCACCTTGTTCAGAGGGCCAAACGAGAGGTaGTCTGCCTTGGGGATACCTGGCTGGGGTGACAAG +
Preference number: 3 (lower is better)
Translates to: LACTLFRGPNER*SALGIPGWGDK
Trigger: CTTGTCACCCCAGCCAGGTATCCCCAAGGCAGAGCACCTCTCGTTTGGCCCTCTGAACAAGGTGCACGCGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR-3UTR CAA 90 bp TTATCCACTCCGCTTGACGTAGGGACTGAGGGGTTGGGAGGGGCATCCTGCCTGTTCCCAAGGGACCTGTaGGCACCCTTTCTCTCCCAG +
Preference number: 3 (lower is better)
Translates to: LSTPLDVGTEGLGGASCLFPRDL*APFLSQ
Trigger: CTGGGAGAGAAAGGGTGCCAACAGGTCCCTTGGGAA...CAGGCAGGATGCCCCTCCCAACCCCTCAGTCCCTACGTCAAGCGGAGTGGATAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR GCA 72 bp AAGGAAGTGGGAGCCGTCTTCATCCCCCAGCTCGCGTaGACCTTGTTCAGAGGGCCAAACGAGAGGTGCTCT +
Preference number: 3 (lower is better)
Translates to: KEVGAVFIPQLA*TLFRGPNERCS
Trigger: AGAGCACCTCTCGTTTGGCCCTCTGAACAAGGTGCACGCGAGCTGGGGGATGAAGACGGCTCCCACTTCCTT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR CCA 72 bp AACGAGATCACAGACCGAATGACCCCAGTTCACACTTaGTACAAGGAGTGGGGCTGGCCTGGCGAGGGCCGA +
Preference number: 3 (lower is better)
Translates to: NEITDRMTPVHT*YKEWGWPGEGR
Trigger: TCGGCCCTCGCCAGGCCAGCCCCACTCCTTGTACCAAGTGTGAACTGGGGTCATTCGGTCTGTGATCTCGTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR-3UTR CAA 90 bp GAAGTCAGCAGCCATCCTCCATTTTCAACATGGACCGCCTGGACACAGCCAGACGAGAGGTGCTCTGCCTaGGGGATACCTGGCTGGGGT +
Preference number: 3 (lower is better)
Translates to: EVSSHPPFSTWTAWTQPDERCSA*GIPGWG
Trigger: ACCCCAGCCAGGTATCCCCAAGGCAGAGCACCTCTC...GTCTGGCTGTGTCCAGGCGGTCCATGTTGAAAATGGAGGATGGCTGCTGACTTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR-3UTR CAA 90 bp GAGGGGCATCCTGCCTGTTTCCTGCAGAGGAGCTCTGATCGGGGAACAGGGCAGACACTGCACAGACATTaGGGGGAAAGAAACTCAGGC +
Preference number: 3 (lower is better)
Translates to: EGHPACFLQRSSDRGTGQTLHRH*GERNSG
Trigger: GCCTGAGTTTCTTTCCCCCAAATGTCTGTGCAGTGT...CTGCCCTGTTCCCCGATCAGAGCTCCTCTGCAGGAAACAGGCAGGATGCCCCTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR CCA 72 bp AAACGTCCAGAGCCAACTCATTCCCAAGGGACCTGTTaGCACCCTTTCTCTCCCAGCCTTAGCCTCCTGGGC +
Preference number: 3 (lower is better)
Translates to: KRPEPTHSQGTC*HPFSPSLSLLG
Trigger: GCCCAGGAGGCTAAGGCTGGGAGAGAAAGGGTGCCAACAGGTCCCTTGGGAATGAGTTGGCTCTGGACGTTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR-3UTR CAA 90 bp ACTTCACAGAGGTTGATCTTTCTGGCCTGTAGGTGTCCCAGGGGCCTCTGTGCTGCAGTGAAAGGGAGGTaGCCCTTTCCCAGGGCAACA +
Preference number: 3 (lower is better)
Translates to: TSQRLIFLACRCPRGLCAAVKGR*PFPRAT
Trigger: TGTTGCCCTGGGAAAGGGCAACCTCCCTTTCACTGC...AGCACAGAGGCCCCTGGGACACCTACAGGCCAGAAAGATCAACCTCTGTGAAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR-3UTR CAA 90 bp TTATCCACTCCGCTTGACGTAGGGACTGAGGGGTTGGGAGGGGCATCCTGCCTGACAGATGAACCCCTCTaGTACACACATACACCCACC +
Preference number: 3 (lower is better)
Translates to: LSTPLDVGTEGLGGASCLTDEPL*YTHTPT
Trigger: GGTGGGTGTATGTGTGTACAAGAGGGGTTCATCTGT...CAGGCAGGATGCCCCTCCCAACCCCTCAGTCCCTACGTCAAGCGGAGTGGATAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR GCA 72 bp ACATGGACCGCCTGGACACAGCCAGACTTGGAGCAGTaGAACGAGATCACAGACCGAATGACCCCAGTTCAC +
Preference number: 3 (lower is better)
Translates to: TWTAWTQPDLEQ*NEITDRMTPVH
Trigger: GTGAACTGGGGTCATTCGGTCTGTGATCTCGTTGCACTGCTCCAAGTCTGGCTGTGTCCAGGCGGTCCATGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR CCA 72 bp CCTTGTTCAGAGGGCCAAACGAGAGGTGCTCTGCCTTaGGGATACCTGGCTGGGGTGACAAGGATCCTCTTA +
Preference number: 3 (lower is better)
Translates to: PCSEGQTRGALP*GYLAGVTRILL
Trigger: TAAGAGGATCCTTGTCACCCCAGCCAGGTATCCCCAAGGCAGAGCACCTCTCGTTTGGCCCTCTGAACAAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR-3UTR CAA 90 bp ATCCTCCATTTTCAACATGGACCGCCTGGACACAGCCAGACTTGGAGCAGTGCATTCCCAAGGGACCTGTaGGCACCCTTTCTCTCCCAG +
Preference number: 3 (lower is better)
Translates to: ILHFQHGPPGHSQTWSSAFPRDL*APFLSQ
Trigger: CTGGGAGAGAAAGGGTGCCAACAGGTCCCTTGGGAA...TGCACTGCTCCAAGTCTGGCTGTGTCCAGGCGGTCCATGTTGAAAATGGAGGAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR GCA 72 bp AACTCAGGCCAGCCCCTTCCAGAAACAATCTCAGCCTaGATGCAGGGAGAAAGCAAGTTAGTCTCCTCGGGC +
Preference number: 3 (lower is better)
Translates to: NSGQPLPETISA*MQGESKLVSSG
Trigger: GCCCGAGGAGACTAACTTGCTTTCTCCCTGCATGCAGGCTGAGATTGTTTCTGGAAGGGGCTGGCCTGAGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR CCA 72 bp GTCAGCAGCCATCCTCCATTTTCAACATGGACCGCCTaGACACAGCCAGACTTGGAGCAGTGCAACGAGATC +
Preference number: 3 (lower is better)
Translates to: VSSHPPFSTWTA*TQPDLEQCNEI
Trigger: GATCTCGTTGCACTGCTCCAAGTCTGGCTGTGTCCAGGCGGTCCATGTTGAAAATGGAGGATGGCTGCTGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR TCA 72 bp GTGGAAGGGGAGAAAGGGAAGAGTGCTCATGTTTGCTaGTGGTCGATTCTGCCTCCGCCACCATCTGCACTA +
Preference number: 3 (lower is better)
Translates to: VEGEKGKSAHVC*WSILPPPPSAL
Trigger: TAGTGCAGATGGTGGCGGAGGCAGAATCGACCATCAGCAAACATGAGCACTCTTCCCTTTCTCCCCTTCCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR TCA 72 bp CAGACTTGGAGCAGTGCAACGAGATCACAGACCGAATaGCCCCAGTTCACACTTGGTACAAGGAGTGGGGCT +
Preference number: 3 (lower is better)
Translates to: QTWSSATRSQTE*PQFTLGTRSGA
Trigger: AGCCCCACTCCTTGTACCAAGTGTGAACTGGGGTCATTCGGTCTGTGATCTCGTTGCACTGCTCCAAGTCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR CCA 72 bp ACACCCACCATATGGTTCTTATTAAGGAAAAGGAAGTaGGAGCCGTCTTCATCCCCCAGCTCGCGTGCACCT +
Preference number: 3 (lower is better)
Translates to: TPTIWFLLRKRK*EPSSSPSSRAP
Trigger: AGGTGCACGCGAGCTGGGGGATGAAGACGGCTCCCACTTCCTTTTCCTTAATAAGAACCATATGGTGGGTGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR-3UTR CAA 90 bp TCCATTTTCAACATGGACCGCCTGGACACAGCCAGACTTGGAGCAGTGCAACGAGAAGAGTGCTCATGTTaGCTGATGGTCGATTCTGCC +
Preference number: 3 (lower is better)
Translates to: SIFNMDRLDTARLGAVQREECSC*LMVDSA
Trigger: GGCAGAATCGACCATCAGCAAACATGAGCACTCTTC...TCGTTGCACTGCTCCAAGTCTGGCTGTGTCCAGGCGGTCCATGTTGAAAATGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR-3UTR CAA 90 bp GTCCAGAGCCAACTCATTCCCAAGGGACCTGTTGGCACCCTTTCTCTCCCAGCCTCTTACAATTTTGTATaGAGAAAACCAGCCCAGCCC +
Preference number: 3 (lower is better)
Translates to: VQSQLIPKGPVGTLSLPASYNFV*RKPAQP
Trigger: GGGCTGGGCTGGTTTTCTCAATACAAAATTGTAAGA...GGCTGGGAGAGAAAGGGTGCCAACAGGTCCCTTGGGAATGAGTTGGCTCTGGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR CCA 72 bp TTTCTTGGGACCCTACTTAGTTCCGTGGGCTCCCATTaGGAGCTGATTAATTTCTGCCAATCAGAACCCATC +
Preference number: 3 (lower is better)
Translates to: FLGTLLSSVGSH*ELINFCQSEPI
Trigger: GATGGGTTCTGATTGGCAGAAATTAATCAGCTCCCAATGGGAGCCCACGGAACTAAGTAGGGTCCCAAGAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR-3UTR CAA 90 bp AATTTCTGCCAATCAGAACCCATCCCTAACACATCAGATGATAGTGGCTTTGACTGGACACAGCCAGACTaGGAGCAGTGCAACGAGATC +
Preference number: 3 (lower is better)
Translates to: NFCQSEPIPNTSDDSGFDWTQPD*EQCNEI
Trigger: GATCTCGTTGCACTGCTCCAAGTCTGGCTGTGTCCA...GTCAAAGCCACTATCATCTGATGTGTTAGGGATGGGTTCTGATTGGCAGAAATT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR GCA 72 bp AGTTCCGTGGGCTCCCATTGGGAGCTGATTAATTTCTaGCAATCAGAACCCATCCCTAACACATCAGATGAT +
Preference number: 3 (lower is better)
Translates to: SSVGSHWELINF*QSEPIPNTSDD
Trigger: ATCATCTGATGTGTTAGGGATGGGTTCTGATTGGCAGAAATTAATCAGCTCCCAATGGGAGCCCACGGAACT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR CCA 72 bp ACCAGGTATGGTTTGAGAGTCCTTAGTTGGTTTTCTTaGGCGTTAGGTAGTAAGAAATCCACCAGGAACCCC +
Preference number: 3 (lower is better)
Translates to: TRYGLRVLSWFS*ALGSKKSTRNP
Trigger: GGGGTTCCTGGTGGATTTCTTACTACCTAACGCCCAAGAAAACCAACTAAGGACTCTCAAACCATACCTGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR CCA 72 bp AGAACCCCCACCAGGTATGGTTTGAGAGTCCTTAGTTaGTTTTCTTGGGCGTTAGGTAGTAAGAAATCCACC +
Preference number: 3 (lower is better)
Translates to: RTPTRYGLRVLS*FSWALGSKKST
Trigger: GGTGGATTTCTTACTACCTAACGCCCAAGAAAACCAACTAAGGACTCTCAAACCATACCTGGTGGGGGTTCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR-3UTR CAA 90 bp TGTAGAGAGCTAAGCTTCCTATACCAAGTTAGAAGTGAAATGACTAGTGGAAAACTAGGGAAGAAGAGGTaGAGCGAAGAACCCCCACCA +
Preference number: 3 (lower is better)
Translates to: CRELSFLYQVRSEMTSGKLGKKR*SEEPPP
Trigger: TGGTGGGGGTTCTTCGCTCAACCTCTTCTTCCCTAG...TTTTCCACTAGTCATTTCACTTCTAACTTGGTATAGGAAGCTTAGCTCTCTACA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR TCA 72 bp GTCACTTGGGCAGATTTGGGTTATCATTCCTCCTTTTaGAGAAGTGAGCAAACAGCCTGCTTTGTTTGGAGA +
Preference number: 3 (lower is better)
Translates to: VTWADLGYHSSF*RSEQTACFVWR
Trigger: TCTCCAAACAAAGCAGGCTGTTTGCTCACTTCTTCAAAAGGAGGAATGATAACCCAAATCTGCCCAAGTGAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR-3UTR CAA 90 bp AATTTCTGCCAATCAGAACCCATCCCTAACACATCAGATGATAGTGGCTTTGACCTTCTCAAGTGTCACTaGGGCAGATTTGGGTTATCA +
Preference number: 3 (lower is better)
Translates to: NFCQSEPIPNTSDDSGFDLLKCH*GRFGLS
Trigger: TGATAACCCAAATCTGCCCAAGTGACACTTGAGAAG...GTCAAAGCCACTATCATCTGATGTGTTAGGGATGGGTTCTGATTGGCAGAAATT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR CCA 72 bp CAGCCAAAACCTTCTCAAGTGTCACTTGGGCAGATTTaGGTTATCATTCCTCCTTTTGAAGAAGTGAGCAAA +
Preference number: 3 (lower is better)
Translates to: QPKPSQVSLGQI*VIIPPFEEVSK
Trigger: TTTGCTCACTTCTTCAAAAGGAGGAATGATAACCCAAATCTGCCCAAGTGACACTTGAGAAGGTTTTGGCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR-3UTR CAA 90 bp TGTAGAGAGCTAAGCTTCCTATACCAAGTTAGAAGTGAAATGACTAGTGGAAAACCCACCAGGTATGGTTaGAGAGTCCTTAGTTGGTTT +
Preference number: 3 (lower is better)
Translates to: CRELSFLYQVRSEMTSGKPTRYG*RVLSWF
Trigger: AAACCAACTAAGGACTCTCAAACCATACCTGGTGGG...TTTTCCACTAGTCATTTCACTTCTAACTTGGTATAGGAAGCTTAGCTCTCTACA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR GCA 90 bp GGCTGCAGTCCTGGCAGGGTGTCCACACTCGCCACCTCGATGGTCCCCTCTTCTCCCCGAAGCCCCGGCTaGCCTGGTGGCCCGACCTTG +
Preference number: 4 (lower is better)
Translates to: GCSPGRVSTLATSMVPSSPRSPG*PGGPTL
Trigger: CAAGGTCGGGCCACCAGGGCAGCCGGGGCTTCGGGG...AGAAGAGGGGACCATCGAGGTGGCGAGTGTGGACACCCTGCCAGGACTGCAGCC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR TCA 90 bp CCTTCAGGGCCCAGCAGAGGCCAGGACTCACAAGGGGCTGGGCTGTGTGCCTCACCCAGCCAAGGGCTGTaGGGGAGGCCGTGCCCCTTT +
Preference number: 4 (lower is better)
Translates to: PSGPSRGQDSQGAGLCASPSQGL*GRPCPF
Trigger: AAAGGGGCACGGCCTCCCTCACAGCCCTTGGCTGGG...TGAGGCACACAGCCCAGCCCCTTGTGAGTCCTGGCCTCTGCTGGGCCCTGAAGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp CCTTCAGGGCCCAGCAGAGGCCAGGACTCACAAGGGGCTGGGCTGTGTGCCTCAAGGCCCGGCAGGCCTTaGGGCCCAATAGGGCCAGCT +
Preference number: 4 (lower is better)
Translates to: PSGPSRGQDSQGAGLCASRPGRP*GPIGPA
Trigger: AGCTGGCCCTATTGGGCCCCAAGGCCTGCCGGGCCT...TGAGGCACACAGCCCAGCCCCTTGTGAGTCCTGGCCTCTGCTGGGCCCTGAAGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR TCA 90 bp GGCTGCAGTCCTGGCAGGGTGTCCACACTCGCCACCTCGATGGTCCCCTCTTCTCCCAGCCAAGGGCTGTaGGGGAGGCCGTGCCCCTTT +
Preference number: 4 (lower is better)
Translates to: GCSPGRVSTLATSMVPSSPSQGL*GRPCPF
Trigger: AAAGGGGCACGGCCTCCCTCACAGCCCTTGGCTGGG...AGAAGAGGGGACCATCGAGGTGGCGAGTGTGGACACCCTGCCAGGACTGCAGCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR GCA 90 bp GAAGTGGGAGCCGTCTTCATCCCCCAGCTCGCGTGCACCTTGTTCAGAGGGCCACTGGTGGCCCGACCTTaGCAGGGAGCCCTGGGGGAC +
Preference number: 4 (lower is better)
Translates to: EVGAVFIPQLACTLFRGPLVARP*QGALGD
Trigger: GTCCCCCAGGGCTCCCTGGCAAGGTCGGGCCACCAG...TGGCCCTCTGAACAAGGTGCACGCGAGCTGGGGGATGAAGACGGCTCCCACTTC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR GCA 90 bp CCTTCAGGGCCCAGCAGAGGCCAGGACTCACAAGGGGCTGGGCTGTGTGCCTCACCGCCGTTGGGCAGGTaGAAGCCTGCGATGCCAGTC +
Preference number: 4 (lower is better)
Translates to: PSGPSRGQDSQGAGLCASPPLGR*KPAMPV
Trigger: GACTGGCATCGCAGGCTTGCACCTGCCCAACGGCGG...TGAGGCACACAGCCCAGCCCCTTGTGAGTCCTGGCCTCTGCTGGGCCCTGAAGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp GAGGGGCATCCTGCCTGTTTCCTGCAGAGGAGCTCTGATCGGGGAACAGGGCAGGGCTCCTGCCACCCCTaGTCCTCCAGGGCGACCCGT +
Preference number: 4 (lower is better)
Translates to: EGHPACFLQRSSDRGTGQGSCHP*SSRATR
Trigger: ACGGGTCGCCCTGGAGGACCAGGGGTGGCAGGAGCC...CTGCCCTGTTCCCCGATCAGAGCTCCTCTGCAGGAAACAGGCAGGATGCCCCTC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR GCA 90 bp TTATCCACTCCGCTTGACGTAGGGACTGAGGGGTTGGGAGGGGCATCCTGCCTGCCGTGGGCCCAGCCGTaGCAGGTTCCCCTGCTCTCC +
Preference number: 4 (lower is better)
Translates to: LSTPLDVGTEGLGGASCLPWAQP*QVPLLS
Trigger: GGAGAGCAGGGGAACCTGGCACGGCTGGGCCCACGG...CAGGCAGGATGCCCCTCCCAACCCCTCAGTCCCTACGTCAAGCGGAGTGGATAA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp GAAGTGGGAGCCGTCTTCATCCCCCAGCTCGCGTGCACCTTGTTCAGAGGGCCAGAATCCTGGGGGCCCTaGCACCCCTTGGGCACCTGG +
Preference number: 4 (lower is better)
Translates to: EVGAVFIPQLACTLFRGPESWGP*HPLGTW
Trigger: CCAGGTGCCCAAGGGGTGCCAGGGCCCCCAGGATTC...TGGCCCTCTGAACAAGGTGCACGCGAGCTGGGGGATGAAGACGGCTCCCACTTC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp CCCCCAGCTCGCGTGCACCTTGTTCAGAGGGCCAAACGAGAGGTGCTCTGCCTTTGGGCCCTGTGGTCCTaGCAACCCTGCTGCCCCTGG +
Preference number: 4 (lower is better)
Translates to: PPARVHLVQRAKREVLCLWALWS*QPCCPW
Trigger: CCAGGGGCAGCAGGGTTGCCAGGACCACAGGGCCCA...AAGGCAGAGCACCTCTCGTTTGGCCCTCTGAACAAGGTGCACGCGAGCTGGGGG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp GGCTGCAGTCCTGGCAGGGTGTCCACACTCGCCACCTCGATGGTCCCCTCTTCTTCGTTGGGCCGCAGCTaGAGCACGGCCCCACCAGAT +
Preference number: 4 (lower is better)
Translates to: GCSPGRVSTLATSMVPSSSLGRS*STAPPD
Trigger: ATCTGGTGGGGCCGTGCTCCAGCTGCGGCCCAACGA...AGAAGAGGGGACCATCGAGGTGGCGAGTGTGGACACCCTGCCAGGACTGCAGCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp CCTTCAGGGCCCAGCAGAGGCCAGGACTCACAAGGGGCTGGGCTGTGTGCCTCAATCTGCACCCAGACCTaGTCGTTGGGCCGCAGCTGG +
Preference number: 4 (lower is better)
Translates to: PSGPSRGQDSQGAGLCASICTQT*SLGRSW
Trigger: CCAGCTGCGGCCCAACGACCAGGTCTGGGTGCAGAT...TGAGGCACACAGCCCAGCCCCTTGTGAGTCCTGGCCTCTGCTGGGCCCTGAAGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR GCA 90 bp GAAGTGGGAGCCGTCTTCATCCCCCAGCTCGCGTGCACCTTGTTCAGAGGGCCACTGGGGGACCAGCCTTaGCCATCCGGGAGAAGCCAG +
Preference number: 4 (lower is better)
Translates to: EVGAVFIPQLACTLFRGPLGDQP*PSGRSQ
Trigger: CTGGCTTCTCCCGGATGGGCAAGGCTGGTCCCCCAG...TGGCCCTCTGAACAAGGTGCACGCGAGCTGGGGGATGAAGACGGCTCCCACTTC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR GCA 90 bp TTATCCACTCCGCTTGACGTAGGGACTGAGGGGTTGGGAGGGGCATCCTGCCTGCGTGCCAGGTTCCCCTaGTCTCCCCTCTCCAGGGGG +
Preference number: 4 (lower is better)
Translates to: LSTPLDVGTEGLGGASCLRARFP*SPLSRG
Trigger: CCCCCTGGAGAGGGGAGAGCAGGGGAACCTGGCACG...CAGGCAGGATGCCCCTCCCAACCCCTCAGTCCCTACGTCAAGCGGAGTGGATAA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR GCA 90 bp GAAGTGGGAGCCGTCTTCATCCCCCAGCTCGCGTGCACCTTGTTCAGAGGGCCACCGCCGTTGGGCAGGTaGAAGCCTGCGATGCCAGTC +
Preference number: 4 (lower is better)
Translates to: EVGAVFIPQLACTLFRGPPPLGR*KPAMPV
Trigger: GACTGGCATCGCAGGCTTGCACCTGCCCAACGGCGG...TGGCCCTCTGAACAAGGTGCACGCGAGCTGGGGGATGAAGACGGCTCCCACTTC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR GCA 90 bp GAGGGGCATCCTGCCTGTTTCCTGCAGAGGAGCTCTGATCGGGGAACAGGGCAGGCCCAAACTGTGGCTTaGCCCCCTTGCCCAGCACGG +
Preference number: 4 (lower is better)
Translates to: EGHPACFLQRSSDRGTGQAQTVA*PPCPAR
Trigger: CCGTGCTGGGCAAGGGGGGCAAGCCACAGTTTGGGC...CTGCCCTGTTCCCCGATCAGAGCTCCTCTGCAGGAAACAGGCAGGATGCCCCTC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp GAAGTGGGAGCCGTCTTCATCCCCCAGCTCGCGTGCACCTTGTTCAGAGGGCCAGGGGCCTGGCAGTCCTaGCATCCCATAGCCAGTGGG +
Preference number: 4 (lower is better)
Translates to: EVGAVFIPQLACTLFRGPGAWQS*HPIASG
Trigger: CCCACTGGCTATGGGATGCCAGGACTGCCAGGCCCC...TGGCCCTCTGAACAAGGTGCACGCGAGCTGGGGGATGAAGACGGCTCCCACTTC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp GAGGGGCATCCTGCCTGTTTCCTGCAGAGGAGCTCTGATCGGGGAACAGGGCAGAAGGCCGGTGTGGCATaGGCAGACAGCTCGCCCAGC +
Preference number: 4 (lower is better)
Translates to: EGHPACFLQRSSDRGTGQKAGVA*ADSSPS
Trigger: GCTGGGCGAGCTGTCTGCCCATGCCACACCGGCCTT...CTGCCCTGTTCCCCGATCAGAGCTCCTCTGCAGGAAACAGGCAGGATGCCCCTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp GAAGTGGGAGCCGTCTTCATCCCCCAGCTCGCGTGCACCTTGTTCAGAGGGCCATCGTTGGGCCGCAGCTaGAGCACGGCCCCACCAGAT +
Preference number: 4 (lower is better)
Translates to: EVGAVFIPQLACTLFRGPSLGRS*STAPPD
Trigger: ATCTGGTGGGGCCGTGCTCCAGCTGCGGCCCAACGA...TGGCCCTCTGAACAAGGTGCACGCGAGCTGGGGGATGAAGACGGCTCCCACTTC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp GTCCAGAGCCAACTCATTCCCAAGGGACCTGTTGGCACCCTTTCTCTCCCAGCCGGTCCCAGGGGGAGCTaGAGGAGCCCCAGCCAAGGG +
Preference number: 4 (lower is better)
Translates to: VQSQLIPKGPVGTLSLPAGPRGS*RSPSQG
Trigger: CCCTTGGCTGGGGCTCCTCCAGCTCCCCCTGGGACC...GGCTGGGAGAGAAAGGGTGCCAACAGGTCCCTTGGGAATGAGTTGGCTCTGGAC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR GCA 90 bp CCCCCAGCTCGCGTGCACCTTGTTCAGAGGGCCAAACGAGAGGTGCTCTGCCTTCCAGCAGGGCCAGGCTaGCCATGGAGTCCTGGCTTT +
Preference number: 4 (lower is better)
Translates to: PPARVHLVQRAKREVLCLPAGPG*PWSPGF
Trigger: AAAGCCAGGACTCCATGGGCAGCCTGGCCCTGCTGG...AAGGCAGAGCACCTCTCGTTTGGCCCTCTGAACAAGGTGCACGCGAGCTGGGGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR GCA 90 bp ACTTCACAGAGGTTGATCTTTCTGGCCTGTAGGTGTCCCAGGGGCCTCTGTGCTCCCCGAAGCCCCGGCTaGCCTGGTGGCCCGACCTTG +
Preference number: 4 (lower is better)
Translates to: TSQRLIFLACRCPRGLCAPRSPG*PGGPTL
Trigger: CAAGGTCGGGCCACCAGGGCAGCCGGGGCTTCGGGG...AGCACAGAGGCCCCTGGGACACCTACAGGCCAGAAAGATCAACCTCTGTGAAGT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR GCA 90 bp CCCCCAGCTCGCGTGCACCTTGTTCAGAGGGCCAAACGAGAGGTGCTCTGCCTTCAAATTTCACGGGCATaGCCGAGGCGGGGAAGGGCG +
Preference number: 4 (lower is better)
Translates to: PPARVHLVQRAKREVLCLQISRA*PRRGRA
Trigger: CGCCCTTCCCCGCCTCGGGCATGCCCGTGAAATTTG...AAGGCAGAGCACCTCTCGTTTGGCCCTCTGAACAAGGTGCACGCGAGCTGGGGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp CCCCCAGCTCGCGTGCACCTTGTTCAGAGGGCCAAACGAGAGGTGCTCTGCCTTCTGGATGTACTTCACTaGGGCATAGCCCGCCGCCCC +
Preference number: 4 (lower is better)
Translates to: PPARVHLVQRAKREVLCLLDVLH*GIARRP
Trigger: GGGGCGGCGGGCTATGCCCCAGTGAAGTACATCCAG...AAGGCAGAGCACCTCTCGTTTGGCCCTCTGAACAAGGTGCACGCGAGCTGGGGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp GAGGGGCATCCTGCCTGTTTCCTGCAGAGGAGCTCTGATCGGGGAACAGGGCAGCTCACCCTTGTCTCCTaGGGCCCCAGGAAGCCCATC +
Preference number: 4 (lower is better)
Translates to: EGHPACFLQRSSDRGTGQLTLVS*GPRKPI
Trigger: GATGGGCTTCCTGGGGCCCCAGGAGACAAGGGTGAG...CTGCCCTGTTCCCCGATCAGAGCTCCTCTGCAGGAAACAGGCAGGATGCCCCTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp GAAGTGGGAGCCGTCTTCATCCCCCAGCTCGCGTGCACCTTGTTCAGAGGGCCACTCACCTGGGACCCCTaGTTTCCCAGCCAGGCCACT +
Preference number: 4 (lower is better)
Translates to: EVGAVFIPQLACTLFRGPLTWDP*FPSQAT
Trigger: AGTGGCCTGGCTGGGAAACCAGGGGTCCCAGGTGAG...TGGCCCTCTGAACAAGGTGCACGCGAGCTGGGGGATGAAGACGGCTCCCACTTC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp GGCTGCAGTCCTGGCAGGGTGTCCACACTCGCCACCTCGATGGTCCCCTCTTCTAAGTCCCCTCTCACCTaGGACCCCTGGTTTCCCAGC +
Preference number: 4 (lower is better)
Translates to: GCSPGRVSTLATSMVPSSKSPLT*DPWFPS
Trigger: GCTGGGAAACCAGGGGTCCCAGGTGAGAGGGGACTT...AGAAGAGGGGACCATCGAGGTGGCGAGTGTGGACACCCTGCCAGGACTGCAGCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp TTATCCACTCCGCTTGACGTAGGGACTGAGGGGTTGGGAGGGGCATCCTGCCTGGGACTCACAAGGGGCTaGGCTGTGTGCCTCAGGGCC +
Preference number: 4 (lower is better)
Translates to: LSTPLDVGTEGLGGASCLGLTRG*AVCLRA
Trigger: GGCCCTGAGGCACACAGCCCAGCCCCTTGTGAGTCC...CAGGCAGGATGCCCCTCCCAACCCCTCAGTCCCTACGTCAAGCGGAGTGGATAA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp GAAGTGGGAGCCGTCTTCATCCCCCAGCTCGCGTGCACCTTGTTCAGAGGGCCACCATCAGGGAGCCAGTaGGAAGGGCTGTCTCCCCAC +
Preference number: 4 (lower is better)
Translates to: EVGAVFIPQLACTLFRGPPSGSQ*EGLSPH
Trigger: GTGGGGAGACAGCCCTTCCCACTGGCTCCCTGATGG...TGGCCCTCTGAACAAGGTGCACGCGAGCTGGGGGATGAAGACGGCTCCCACTTC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp TTATCCACTCCGCTTGACGTAGGGACTGAGGGGTTGGGAGGGGCATCCTGCCTGTGGGGGCTGCAGTCCTaGCAGGGTGTCCACACTCGC +
Preference number: 4 (lower is better)
Translates to: LSTPLDVGTEGLGGASCLWGLQS*QGVHTR
Trigger: GCGAGTGTGGACACCCTGCCAGGACTGCAGCCCCCA...CAGGCAGGATGCCCCTCCCAACCCCTCAGTCCCTACGTCAAGCGGAGTGGATAA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp GGCTGCAGTCCTGGCAGGGTGTCCACACTCGCCACCTCGATGGTCCCCTCTTCTCCAGCCCGCAGCAGGTaGAAGGGGAGAAAGGGAAGA +
Preference number: 4 (lower is better)
Translates to: GCSPGRVSTLATSMVPSSPARSR*KGRKGR
Trigger: TCTTCCCTTTCTCCCCTTCCACCTGCTGCGGGCTGG...AGAAGAGGGGACCATCGAGGTGGCGAGTGTGGACACCCTGCCAGGACTGCAGCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp GAGGGGCATCCTGCCTGTTTCCTGCAGAGGAGCTCTGATCGGGGAACAGGGCAGACTTGGTACAAGGAGTaGGGCTGGCCTGGCGAGGGC +
Preference number: 4 (lower is better)
Translates to: EGHPACFLQRSSDRGTGQTWYKE*GWPGEG
Trigger: GCCCTCGCCAGGCCAGCCCCACTCCTTGTACCAAGT...CTGCCCTGTTCCCCGATCAGAGCTCCTCTGCAGGAAACAGGCAGGATGCCCCTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp CCCCCAGCTCGCGTGCACCTTGTTCAGAGGGCCAAACGAGAGGTGCTCTGCCTTACTTGGTACAAGGAGTaGGGCTGGCCTGGCGAGGGC +
Preference number: 4 (lower is better)
Translates to: PPARVHLVQRAKREVLCLTWYKE*GWPGEG
Trigger: GCCCTCGCCAGGCCAGCCCCACTCCTTGTACCAAGT...AAGGCAGAGCACCTCTCGTTTGGCCCTCTGAACAAGGTGCACGCGAGCTGGGGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR GCA 90 bp ACTTCACAGAGGTTGATCTTTCTGGCCTGTAGGTGTCCCAGGGGCCTCTGTGCTCTGGTGGCCCGACCTTaGCAGGGAGCCCTGGGGGAC +
Preference number: 4 (lower is better)
Translates to: TSQRLIFLACRCPRGLCALVARP*QGALGD
Trigger: GTCCCCCAGGGCTCCCTGGCAAGGTCGGGCCACCAG...AGCACAGAGGCCCCTGGGACACCTACAGGCCAGAAAGATCAACCTCTGTGAAGT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR GCA 90 bp CCCCCAGCTCGCGTGCACCTTGTTCAGAGGGCCAAACGAGAGGTGCTCTGCCTTTGGTCCGACGGCATCTaGACCCAGACCTGGTCGTTG +
Preference number: 4 (lower is better)
Translates to: PPARVHLVQRAKREVLCLWSDGI*TQTWSL
Trigger: CAACGACCAGGTCTGGGTGCAGATGCCGTCGGACCA...AAGGCAGAGCACCTCTCGTTTGGCCCTCTGAACAAGGTGCACGCGAGCTGGGGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR GCA 90 bp GGCTGCAGTCCTGGCAGGGTGTCCACACTCGCCACCTCGATGGTCCCCTCTTCTTCCCAGGGGCCTCTGTaGTGCCCTCAAGCTAAACAG +
Preference number: 4 (lower is better)
Translates to: GCSPGRVSTLATSMVPSSSQGPL*CPQAKQ
Trigger: CTGTTTAGCTTGAGGGCAGCACAGAGGCCCCTGGGA...AGAAGAGGGGACCATCGAGGTGGCGAGTGTGGACACCCTGCCAGGACTGCAGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp CCTTCAGGGCCCAGCAGAGGCCAGGACTCACAAGGGGCTGGGCTGTGTGCCTCACTGCCCATGGAGTCCTaGCTTTCCCATGCCTGGTTT +
Preference number: 4 (lower is better)
Translates to: PSGPSRGQDSQGAGLCASLPMES*LSHAWF
Trigger: AAACCAGGCATGGGAAAGCCAGGACTCCATGGGCAG...TGAGGCACACAGCCCAGCCCCTTGTGAGTCCTGGCCTCTGCTGGGCCCTGAAGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp GAAGTGGGAGCCGTCTTCATCCCCCAGCTCGCGTGCACCTTGTTCAGAGGGCCAGAAGATGCCAGTGGCTaGGTTGTAGCCGCTGTGGCC +
Preference number: 4 (lower is better)
Translates to: EVGAVFIPQLACTLFRGPEDASG*VVAAVA
Trigger: GGCCACAGCGGCTACAACCCAGCCACTGGCATCTTC...TGGCCCTCTGAACAAGGTGCACGCGAGCTGGGGGATGAAGACGGCTCCCACTTC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp GGCTGCAGTCCTGGCAGGGTGTCCACACTCGCCACCTCGATGGTCCCCTCTTCTCCAGCCTTAGCCTCCTaGGCCCTAGTCCTGCTTAGA +
Preference number: 4 (lower is better)
Translates to: GCSPGRVSTLATSMVPSSPALAS*ALVLLR
Trigger: TCTAAGCAGGACTAGGGCCCAGGAGGCTAAGGCTGG...AGAAGAGGGGACCATCGAGGTGGCGAGTGTGGACACCCTGCCAGGACTGCAGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp CCTTCAGGGCCCAGCAGAGGCCAGGACTCACAAGGGGCTGGGCTGTGTGCCTCATCAACATGGACCGCCTaGACACAGCCAGACTTGGAG +
Preference number: 4 (lower is better)
Translates to: PSGPSRGQDSQGAGLCASSTWTA*TQPDLE
Trigger: CTCCAAGTCTGGCTGTGTCCAGGCGGTCCATGTTGA...TGAGGCACACAGCCCAGCCCCTTGTGAGTCCTGGCCTCTGCTGGGCCCTGAAGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR CAA 72 bp GTGGGAGCCGTCTTCATCCCCCAGCTCGCGTGCACCTaGTTCAGAGGGCCAAACGAGAGGTGCTCTGCCTTG +
Preference number: 4 (lower is better)
Translates to: VGAVFIPQLACT*FRGPNERCSAL
Trigger: CAAGGCAGAGCACCTCTCGTTTGGCCCTCTGAACAAGGTGCACGCGAGCTGGGGGATGAAGACGGCTCCCAC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR TCA 90 bp TTATCCACTCCGCTTGACGTAGGGACTGAGGGGTTGGGAGGGGCATCCTGCCTGCCTGCAGAGGAGCTCTaGTCGGGGAACAGGGCAGAA +
Preference number: 4 (lower is better)
Translates to: LSTPLDVGTEGLGGASCLPAEEL*SGNRAE
Trigger: TTCTGCCCTGTTCCCCGATCAGAGCTCCTCTGCAGG...CAGGCAGGATGCCCCTCCCAACCCCTCAGTCCCTACGTCAAGCGGAGTGGATAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR GCA 90 bp GTCCAGAGCCAACTCATTCCCAAGGGACCTGTTGGCACCCTTTCTCTCCCAGCCCCTGGTCACCTCGAATaGCAGGCACTCCTGGGGGTC +
Preference number: 4 (lower is better)
Translates to: VQSQLIPKGPVGTLSLPAPGHLE*QALLGV
Trigger: GACCCCCAGGAGTGCCTGGCATTCGAGGTGACCAGG...GGCTGGGAGAGAAAGGGTGCCAACAGGTCCCTTGGGAATGAGTTGGCTCTGGAC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR GCA 90 bp TTATCCACTCCGCTTGACGTAGGGACTGAGGGGTTGGGAGGGGCATCCTGCCTGTCAGGGCCTATGGGGTaGAGCCCTGACACTGCACAG +
Preference number: 4 (lower is better)
Translates to: LSTPLDVGTEGLGGASCLSGPMG*SPDTAQ
Trigger: CTGTGCAGTGTCAGGGCTGCACCCCATAGGCCCTGA...CAGGCAGGATGCCCCTCCCAACCCCTCAGTCCCTACGTCAAGCGGAGTGGATAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR GCA 90 bp GAAGTGGGAGCCGTCTTCATCCCCCAGCTCGCGTGCACCTTGTTCAGAGGGCCATGCCTTCCCCATGGCTaGCACTGGAGCAGTGAAAGG +
Preference number: 4 (lower is better)
Translates to: EVGAVFIPQLACTLFRGPCLPHG*HWSSER
Trigger: CCTTTCACTGCTCCAGTGGCAGCCATGGGGAAGGCA...TGGCCCTCTGAACAAGGTGCACGCGAGCTGGGGGATGAAGACGGCTCCCACTTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR GCA 90 bp GTCCAGAGCCAACTCATTCCCAAGGGACCTGTTGGCACCCTTTCTCTCCCAGCCGCGAGGCCCTGCAGCTaGGGGGAAAGTGGCCATCTT +
Preference number: 4 (lower is better)
Translates to: VQSQLIPKGPVGTLSLPAARPCS*GESGHL
Trigger: AAGATGGCCACTTTCCCCGCAGCTGCAGGGCCTCGC...GGCTGGGAGAGAAAGGGTGCCAACAGGTCCCTTGGGAATGAGTTGGCTCTGGAC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp AGTCAGAAGTCAGCAGCCATCCTCCATTTTCAACATGGACCGCCTGGACACAGCGGCCCTGGTTCCCCCTaGAATCCTGGGGGCCCTGGC +
Preference number: 4 (lower is better)
Translates to: SQKSAAILHFQHGPPGHSGPGSP*NPGGPG
Trigger: GCCAGGGCCCCCAGGATTCCAGGGGGAACCAGGGCC...GCTGTGTCCAGGCGGTCCATGTTGAAAATGGAGGATGGCTGCTGACTTCTGACT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp AGTCAGAAGTCAGCAGCCATCCTCCATTTTCAACATGGACCGCCTGGACACAGCGAGGCCTCGATCACCTaGGGGCCCAGGCTCCCCCTG +
Preference number: 4 (lower is better)
Translates to: SQKSAAILHFQHGPPGHSEASIT*GPRLPL
Trigger: CAGGGGGAGCCTGGGCCCCCAGGTGATCGAGGCCTC...GCTGTGTCCAGGCGGTCCATGTTGAAAATGGAGGATGGCTGCTGACTTCTGACT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp GAAGTCAGCAGCCATCCTCCATTTTCAACATGGACCGCCTGGACACAGCCAGACTGGGCCCTGTGGTCCTaGCAACCCTGCTGCCCCTGG +
Preference number: 4 (lower is better)
Translates to: EVSSHPPFSTWTAWTQPDWALWS*QPCCPW
Trigger: CCAGGGGCAGCAGGGTTGCCAGGACCACAGGGCCCA...GTCTGGCTGTGTCCAGGCGGTCCATGTTGAAAATGGAGGATGGCTGCTGACTTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp TTATCCACTCCGCTTGACGTAGGGACTGAGGGGTTGGGAGGGGCATCCTGCCTGAAGTCCCCTCTCACCTaGGACCCCTGGTTTCCCAGC +
Preference number: 4 (lower is better)
Translates to: LSTPLDVGTEGLGGASCLKSPLT*DPWFPS
Trigger: GCTGGGAAACCAGGGGTCCCAGGTGAGAGGGGACTT...CAGGCAGGATGCCCCTCCCAACCCCTCAGTCCCTACGTCAAGCGGAGTGGATAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp ATCCTCCATTTTCAACATGGACCGCCTGGACACAGCCAGACTTGGAGCAGTGCAGGCTCCTGCCACCCCTaGTCCTCCAGGGCGACCCGT +
Preference number: 4 (lower is better)
Translates to: ILHFQHGPPGHSQTWSSAGSCHP*SSRATR
Trigger: ACGGGTCGCCCTGGAGGACCAGGGGTGGCAGGAGCC...TGCACTGCTCCAAGTCTGGCTGTGTCCAGGCGGTCCATGTTGAAAATGGAGGAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp GAAGTCAGCAGCCATCCTCCATTTTCAACATGGACCGCCTGGACACAGCCAGACAGGCCCGGCAGGCCTTaGGGCCCAATAGGGCCAGCT +
Preference number: 4 (lower is better)
Translates to: EVSSHPPFSTWTAWTQPDRPGRP*GPIGPA
Trigger: AGCTGGCCCTATTGGGCCCCAAGGCCTGCCGGGCCT...GTCTGGCTGTGTCCAGGCGGTCCATGTTGAAAATGGAGGATGGCTGCTGACTTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp AAACGTCCAGAGCCAACTCATTCCCAAGGGACCTGTTGGCACCCTTTCTCTCCCCCCAGACCTGGTCGTTaGGCCGCAGCTGGAGCACGG +
Preference number: 4 (lower is better)
Translates to: KRPEPTHSQGTCWHPFSPPRPGR*AAAGAR
Trigger: CCGTGCTCCAGCTGCGGCCCAACGACCAGGTCTGGG...GGGAGAGAAAGGGTGCCAACAGGTCCCTTGGGAATGAGTTGGCTCTGGACGTTT
61% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp GAAGTCAGCAGCCATCCTCCATTTTCAACATGGACCGCCTGGACACAGCCAGACCCCAGACCTGGTCGTTaGGCCGCAGCTGGAGCACGG +
Preference number: 4 (lower is better)
Translates to: EVSSHPPFSTWTAWTQPDPRPGR*AAAGAR
Trigger: CCGTGCTCCAGCTGCGGCCCAACGACCAGGTCTGGG...GTCTGGCTGTGTCCAGGCGGTCCATGTTGAAAATGGAGGATGGCTGCTGACTTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp GTCCAGAGCCAACTCATTCCCAAGGGACCTGTTGGCACCCTTTCTCTCCCAGCCATCTGCACCCAGACCTaGTCGTTGGGCCGCAGCTGG +
Preference number: 4 (lower is better)
Translates to: VQSQLIPKGPVGTLSLPAICTQT*SLGRSW
Trigger: CCAGCTGCGGCCCAACGACCAGGTCTGGGTGCAGAT...GGCTGGGAGAGAAAGGGTGCCAACAGGTCCCTTGGGAATGAGTTGGCTCTGGAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp TTATCCACTCCGCTTGACGTAGGGACTGAGGGGTTGGGAGGGGCATCCTGCCTGTGGAGTAGAGGCCGTTaGCCTGGTCCGACGGCATCT +
Preference number: 4 (lower is better)
Translates to: LSTPLDVGTEGLGGASCLWSRGR*PGPTAS
Trigger: AGATGCCGTCGGACCAGGCCAACGGCCTCTACTCCA...CAGGCAGGATGCCCCTCCCAACCCCTCAGTCCCTACGTCAAGCGGAGTGGATAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp GGCTGCAGTCCTGGCAGGGTGTCCACACTCGCCACCTCGATGGTCCCCTCTTCTAGTGGATGTACTCCGTaGAGTAGAGGCCGTTGGCCT +
Preference number: 4 (lower is better)
Translates to: GCSPGRVSTLATSMVPSSSGCTP*SRGRWP
Trigger: AGGCCAACGGCCTCTACTCCACGGAGTACATCCACT...AGAAGAGGGGACCATCGAGGTGGCGAGTGTGGACACCCTGCCAGGACTGCAGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp CTAGACACTTCACAGAGGTTGATCTTTCTGGCCTGTAGGTGTCCCAGGGGCCTCCCCCACGTGGCGGGGTaGGGAGTTGAGCTCCCTCTC +
Preference number: 4 (lower is better)
Translates to: LDTSQRLIFLACRCPRGLPHVAG*GVELPL
Trigger: GAGAGGGAGCTCAACTCCCCACCCCGCCACGTGGGG...GAGGCCCCTGGGACACCTACAGGCCAGAAAGATCAACCTCTGTGAAGTGTCTAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp AGTCAGAAGTCAGCAGCCATCCTCCATTTTCAACATGGACCGCCTGGACACAGCGGTCCCAGGGGGAGCTaGAGGAGCCCCAGCCAAGGG +
Preference number: 4 (lower is better)
Translates to: SQKSAAILHFQHGPPGHSGPRGS*RSPSQG
Trigger: CCCTTGGCTGGGGCTCCTCCAGCTCCCCCTGGGACC...GCTGTGTCCAGGCGGTCCATGTTGAAAATGGAGGATGGCTGCTGACTTCTGACT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp TTATCCACTCCGCTTGACGTAGGGACTGAGGGGTTGGGAGGGGCATCCTGCCTGCACTCGCCACCTCGATaGTCCCCTCTTCTCCCTTCC +
Preference number: 4 (lower is better)
Translates to: LSTPLDVGTEGLGGASCLHSPPR*SPLLPS
Trigger: GGAAGGGAGAAGAGGGGACCATCGAGGTGGCGAGTG...CAGGCAGGATGCCCCTCCCAACCCCTCAGTCCCTACGTCAAGCGGAGTGGATAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp CCCCCAGCTCGCGTGCACCTTGTTCAGAGGGCCAAACGAGAGGTGCTCTGCCTTCCCCATGGCTGCCACTaGAGCAGTGAAAGGGAGGTT +
Preference number: 4 (lower is better)
Translates to: PPARVHLVQRAKREVLCLPHGCH*SSEREV
Trigger: AACCTCCCTTTCACTGCTCCAGTGGCAGCCATGGGG...AAGGCAGAGCACCTCTCGTTTGGCCCTCTGAACAAGGTGCACGCGAGCTGGGGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp CCTTCAGGGCCCAGCAGAGGCCAGGACTCACAAGGGGCTGGGCTGTGTGCCTCATTGGGGATACCTGGCTaGGGTGACAAGGATCCTCTT +
Preference number: 4 (lower is better)
Translates to: PSGPSRGQDSQGAGLCASLGIPG*GDKDPL
Trigger: AAGAGGATCCTTGTCACCCCAGCCAGGTATCCCCAA...TGAGGCACACAGCCCAGCCCCTTGTGAGTCCTGGCCTCTGCTGGGCCCTGAAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp TTATCCACTCCGCTTGACGTAGGGACTGAGGGGTTGGGAGGGGCATCCTGCCTGCCAGCATGGCGTCCGTaGACGTGCTTTCAGGTCGGA +
Preference number: 4 (lower is better)
Translates to: LSTPLDVGTEGLGGASCLPAWRP*TCFQVG
Trigger: TCCGACCTGAAAGCACGTCCACGGACGCCATGCTGG...CAGGCAGGATGCCCCTCCCAACCCCTCAGTCCCTACGTCAAGCGGAGTGGATAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000397799.2
CDS-3UTR TCA 90 bp CTAGACACTTCACAGAGGTTGATCTTTCTGGCCTGTAGGTGTCCCAGGGGCCTCAGGGATAGTAATGCCTaGGGGGCCCGGGAGGCCAGG +
Preference number: 4 (lower is better)
Translates to: LDTSQRLIFLACRCPRGLRDSNA*GAREAR
Trigger: CCTGGCCTCCCGGGCCCCTCAGGCATTACTATCCCT...GAGGCCCCTGGGACACCTACAGGCCAGAAAGATCAACCTCTGTGAAGTGTCTAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR GCA 90 bp AGTCAGAAGTCAGCAGCCATCCTCCATTTTCAACATGGACCGCCTGGACACAGCCAGGGGGCCCACGTCTaGCAGGAAGCCCTGCAGACC +
Preference number: 4 (lower is better)
Translates to: SQKSAAILHFQHGPPGHSQGAHV*QEALQT
Trigger: GGTCTGCAGGGCTTCCTGGCAGACGTGGGCCCCCTG...GCTGTGTCCAGGCGGTCCATGTTGAAAATGGAGGATGGCTGCTGACTTCTGACT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR GCA 90 bp TCCATTTTCAACATGGACCGCCTGGACACAGCCAGACTTGGAGCAGTGCAACGACGTGCCAGGTTCCCCTaGTCTCCCCTCTCCAGGGGG +
Preference number: 4 (lower is better)
Translates to: SIFNMDRLDTARLGAVQRRARFP*SPLSRG
Trigger: CCCCCTGGAGAGGGGAGAGCAGGGGAACCTGGCACG...TCGTTGCACTGCTCCAAGTCTGGCTGTGTCCAGGCGGTCCATGTTGAAAATGGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR GCA 90 bp ATGGTTCTTATTAAGGAAAAGGAAGTGGGAGCCGTCTTCATCCCCCAGCTCGCGCCGTGGGCCCAGCCGTaGCAGGTTCCCCTGCTCTCC +
Preference number: 4 (lower is better)
Translates to: MVLIKEKEVGAVFIPQLAPWAQP*QVPLLS
Trigger: GGAGAGCAGGGGAACCTGGCACGGCTGGGCCCACGG...CGCGAGCTGGGGGATGAAGACGGCTCCCACTTCCTTTTCCTTAATAAGAACCAT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR GCA 90 bp TTATCCACTCCGCTTGACGTAGGGACTGAGGGGTTGGGAGGGGCATCCTGCCTGGCTGATGGTCGATTCTaGCTCCGCCACCATCTGCAC +
Preference number: 4 (lower is better)
Translates to: LSTPLDVGTEGLGGASCLADGRF*LRHHLH
Trigger: GTGCAGATGGTGGCGGAGGCAGAATCGACCATCAGC...CAGGCAGGATGCCCCTCCCAACCCCTCAGTCCCTACGTCAAGCGGAGTGGATAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR GCA 90 bp TTATCCACTCCGCTTGACGTAGGGACTGAGGGGTTGGGAGGGGCATCCTGCCTGGGGCCAAACGAGAGGTaGTCTGCCTTGGGGATACCT +
Preference number: 4 (lower is better)
Translates to: LSTPLDVGTEGLGGASCLGPNER*SALGIP
Trigger: AGGTATCCCCAAGGCAGAGCACCTCTCGTTTGGCCC...CAGGCAGGATGCCCCTCCCAACCCCTCAGTCCCTACGTCAAGCGGAGTGGATAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp ATGGTTCTTATTAAGGAAAAGGAAGTGGGAGCCGTCTTCATCCCCCAGCTCGCGAAGCCCCGGCTGCCCTaGTGGCCCGACCTTGCCAGG +
Preference number: 4 (lower is better)
Translates to: MVLIKEKEVGAVFIPQLAKPRLP*WPDLAR
Trigger: CCTGGCAAGGTCGGGCCACCAGGGCAGCCGGGGCTT...CGCGAGCTGGGGGATGAAGACGGCTCCCACTTCCTTTTCCTTAATAAGAACCAT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp AAACGTCCAGAGCCAACTCATTCCCAAGGGACCTGTTGGCACCCTTTCTCTCCCGGCCCTGGCACCCCTTaGGCACCTGGTTTTCCAGGG +
Preference number: 4 (lower is better)
Translates to: KRPEPTHSQGTCWHPFSPGPGTP*APGFPG
Trigger: CCCTGGAAAACCAGGTGCCCAAGGGGTGCCAGGGCC...GGGAGAGAAAGGGTGCCAACAGGTCCCTTGGGAATGAGTTGGCTCTGGACGTTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp ATGGTTCTTATTAAGGAAAAGGAAGTGGGAGCCGTCTTCATCCCCCAGCTCGCGGGCCCTGGTTCCCCCTaGAATCCTGGGGGCCCTGGC +
Preference number: 4 (lower is better)
Translates to: MVLIKEKEVGAVFIPQLAGPGSP*NPGGPG
Trigger: GCCAGGGCCCCCAGGATTCCAGGGGGAACCAGGGCC...CGCGAGCTGGGGGATGAAGACGGCTCCCACTTCCTTTTCCTTAATAAGAACCAT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp CTAGACACTTCACAGAGGTTGATCTTTCTGGCCTGTAGGTGTCCCAGGGGCCTCTCCCTGGCTCCCCTTTaGCCCCTGATGGGCCCTGTG +
Preference number: 4 (lower is better)
Translates to: LDTSQRLIFLACRCPRGLSLAPL*PLMGPV
Trigger: CACAGGGCCCATCAGGGGCCAAAGGGGAGCCAGGGA...GAGGCCCCTGGGACACCTACAGGCCAGAAAGATCAACCTCTGTGAAGTGTCTAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp ACTTCACAGAGGTTGATCTTTCTGGCCTGTAGGTGTCCCAGGGGCCTCTGTGCTGGGGCCTGGCAGTCCTaGCATCCCATAGCCAGTGGG +
Preference number: 4 (lower is better)
Translates to: TSQRLIFLACRCPRGLCAGAWQS*HPIASG
Trigger: CCCACTGGCTATGGGATGCCAGGACTGCCAGGCCCC...AGCACAGAGGCCCCTGGGACACCTACAGGCCAGAAAGATCAACCTCTGTGAAGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp GAGGGGCATCCTGCCTGTTTCCTGCAGAGGAGCTCTGATCGGGGAACAGGGCAGAGTGGATGTACTCCGTaGAGTAGAGGCCGTTGGCCT +
Preference number: 4 (lower is better)
Translates to: EGHPACFLQRSSDRGTGQSGCTP*SRGRWP
Trigger: AGGCCAACGGCCTCTACTCCACGGAGTACATCCACT...CTGCCCTGTTCCCCGATCAGAGCTCCTCTGCAGGAAACAGGCAGGATGCCCCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp GAAGTCAGCAGCCATCCTCCATTTTCAACATGGACCGCCTGGACACAGCCAGACCTAAACAGCCAGAGCTaGCGGGGGCAGCCCGGGAGA +
Preference number: 4 (lower is better)
Translates to: EVSSHPPFSTWTAWTQPDLNSQS*RGQPGR
Trigger: TCTCCCGGGCTGCCCCCGCCAGCTCTGGCTGTTTAG...GTCTGGCTGTGTCCAGGCGGTCCATGTTGAAAATGGAGGATGGCTGCTGACTTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp CTAGACACTTCACAGAGGTTGATCTTTCTGGCCTGTAGGTGTCCCAGGGGCCTCCTAAACAGCCAGAGCTaGCGGGGGCAGCCCGGGAGA +
Preference number: 4 (lower is better)
Translates to: LDTSQRLIFLACRCPRGLLNSQS*RGQPGR
Trigger: TCTCCCGGGCTGCCCCCGCCAGCTCTGGCTGTTTAG...GAGGCCCCTGGGACACCTACAGGCCAGAAAGATCAACCTCTGTGAAGTGTCTAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp CCTTCAGGGCCCAGCAGAGGCCAGGACTCACAAGGGGCTGGGCTGTGTGCCTCATTAAGGAAAAGGAAGTaGGAGCCGTCTTCATCCCCC +
Preference number: 4 (lower is better)
Translates to: PSGPSRGQDSQGAGLCASLRKRK*EPSSSP
Trigger: GGGGGATGAAGACGGCTCCCACTTCCTTTTCCTTAA...TGAGGCACACAGCCCAGCCCCTTGTGAGTCCTGGCCTCTGCTGGGCCCTGAAGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR TCA 90 bp GAGGGGCATCCTGCCTGTTTCCTGCAGAGGAGCTCTGATCGGGGAACAGGGCAGACACGTTGGTGCCCTTaGCGTGCACATGGTAAGCAA +
Preference number: 4 (lower is better)
Translates to: EGHPACFLQRSSDRGTGQTRWCP*RAHGKQ
Trigger: TTGCTTACCATGTGCACGTCAAGGGCACCAACGTGT...CTGCCCTGTTCCCCGATCAGAGCTCCTCTGCAGGAAACAGGCAGGATGCCCCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR TCA 90 bp GGCTGCAGTCCTGGCAGGGTGTCCACACTCGCCACCTCGATGGTCCCCTCTTCTGATACCTGGCTGGGGTaGCAAGGATCCTCTTACAAT +
Preference number: 4 (lower is better)
Translates to: GCSPGRVSTLATSMVPSSDTWLG*QGSSYN
Trigger: ATTGTAAGAGGATCCTTGTCACCCCAGCCAGGTATC...AGAAGAGGGGACCATCGAGGTGGCGAGTGTGGACACCCTGCCAGGACTGCAGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR GCA 90 bp ACTTCACAGAGGTTGATCTTTCTGGCCTGTAGGTGTCCCAGGGGCCTCTGTGCTCCTGGTCACCTCGAATaGCAGGCACTCCTGGGGGTC +
Preference number: 4 (lower is better)
Translates to: TSQRLIFLACRCPRGLCAPGHLE*QALLGV
Trigger: GACCCCCAGGAGTGCCTGGCATTCGAGGTGACCAGG...AGCACAGAGGCCCCTGGGACACCTACAGGCCAGAAAGATCAACCTCTGTGAAGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR GCA 90 bp AGTCAGAAGTCAGCAGCCATCCTCCATTTTCAACATGGACCGCCTGGACACAGCGCCCAAACTGTGGCTTaGCCCCCTTGCCCAGCACGG +
Preference number: 4 (lower is better)
Translates to: SQKSAAILHFQHGPPGHSAQTVA*PPCPAR
Trigger: CCGTGCTGGGCAAGGGGGGCAAGCCACAGTTTGGGC...GCTGTGTCCAGGCGGTCCATGTTGAAAATGGAGGATGGCTGCTGACTTCTGACT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR GCA 90 bp AAACGTCCAGAGCCAACTCATTCCCAAGGGACCTGTTGGCACCCTTTCTCTCCCCAAATTTCACGGGCATaGCCGAGGCGGGGAAGGGCG +
Preference number: 4 (lower is better)
Translates to: KRPEPTHSQGTCWHPFSPQISRA*PRRGRA
Trigger: CGCCCTTCCCCGCCTCGGGCATGCCCGTGAAATTTG...GGGAGAGAAAGGGTGCCAACAGGTCCCTTGGGAATGAGTTGGCTCTGGACGTTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR GCA 90 bp GTCCAGAGCCAACTCATTCCCAAGGGACCTGTTGGCACCCTTTCTCTCCCAGCCCAGGGGCCTCTGTGCTaGCCTCAAGCTAAACAGCCA +
Preference number: 4 (lower is better)
Translates to: VQSQLIPKGPVGTLSLPAQGPLC*PQAKQP
Trigger: TGGCTGTTTAGCTTGAGGGCAGCACAGAGGCCCCTG...GGCTGGGAGAGAAAGGGTGCCAACAGGTCCCTTGGGAATGAGTTGGCTCTGGAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR GCA 90 bp AGGTTCTTTGTAATTGAAAAGGTCGCTCTACCACTAAAGGGGAGGAGGCCAGGGCCGAGCGCGAGGCCCTaGAGCTGCGGGGAAAGTGGC +
Preference number: 4 (lower is better)
Translates to: RFFVIEKVALPLKGRRPGPSARP*SCGESG
Trigger: GCCACTTTCCCCGCAGCTGCAGGGCCTCGCGCTCGG...CCCTGGCCTCCTCCCCTTTAGTGGTAGAGCGACCTTTTCAATTACAAAGAACCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR GCA 90 bp CCCCCAGCTCGCGTGCACCTTGTTCAGAGGGCCAAACGAGAGGTGCTCTGCCTTCCAGACTTGGAGCAGTaGAACGAGATCACAGACCGA +
Preference number: 4 (lower is better)
Translates to: PPARVHLVQRAKREVLCLPDLEQ*NEITDR
Trigger: TCGGTCTGTGATCTCGTTGCACTGCTCCAAGTCTGG...AAGGCAGAGCACCTCTCGTTTGGCCCTCTGAACAAGGTGCACGCGAGCTGGGGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp GAAGTGGGAGCCGTCTTCATCCCCCAGCTCGCGTGCACCTTGTTCAGAGGGCCACCTTTCTGCATGGGCTaGATGTACTTCACTGGGGCA +
Preference number: 4 (lower is better)
Translates to: EVGAVFIPQLACTLFRGPPFCMG*MYFTGA
Trigger: TGCCCCAGTGAAGTACATCCAGCCCATGCAGAAAGG...TGGCCCTCTGAACAAGGTGCACGCGAGCTGGGGGATGAAGACGGCTCCCACTTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp GGCTGCAGTCCTGGCAGGGTGTCCACACTCGCCACCTCGATGGTCCCCTCTTCTCAGGTCCTTTCTGCATaGGCTGGATGTACTTCACTG +
Preference number: 4 (lower is better)
Translates to: GCSPGRVSTLATSMVPSSQVLSA*AGCTSL
Trigger: CAGTGAAGTACATCCAGCCCATGCAGAAAGGACCTG...AGAAGAGGGGACCATCGAGGTGGCGAGTGTGGACACCCTGCCAGGACTGCAGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp CTAGACACTTCACAGAGGTTGATCTTTCTGGCCTGTAGGTGTCCCAGGGGCCTCCTCACCCTTGTCTCCTaGGGCCCCAGGAAGCCCATC +
Preference number: 4 (lower is better)
Translates to: LDTSQRLIFLACRCPRGLLTLVS*GPRKPI
Trigger: GATGGGCTTCCTGGGGCCCCAGGAGACAAGGGTGAG...GAGGCCCCTGGGACACCTACAGGCCAGAAAGATCAACCTCTGTGAAGTGTCTAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp AGTCAGAAGTCAGCAGCCATCCTCCATTTTCAACATGGACCGCCTGGACACAGCTCCCTGGCTCCCCTTTaGCCCCTGATGGGCCCTGTG +
Preference number: 4 (lower is better)
Translates to: SQKSAAILHFQHGPPGHSSLAPL*PLMGPV
Trigger: CACAGGGCCCATCAGGGGCCAAAGGGGAGCCAGGGA...GCTGTGTCCAGGCGGTCCATGTTGAAAATGGAGGATGGCTGCTGACTTCTGACT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp ACTTCACAGAGGTTGATCTTTCTGGCCTGTAGGTGTCCCAGGGGCCTCTGTGCTGCATCCCATAGCCAGTaGGGCCTATCAGCCCAGGGG +
Preference number: 4 (lower is better)
Translates to: TSQRLIFLACRCPRGLCAASHSQ*GLSAQG
Trigger: CCCCTGGGCTGATAGGCCCCACTGGCTATGGGATGC...AGCACAGAGGCCCCTGGGACACCTACAGGCCAGAAAGATCAACCTCTGTGAAGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp TCCATTTTCAACATGGACCGCCTGGACACAGCCAGACTTGGAGCAGTGCAACGAAATGCCAGGCACTCCTaGGGGTCCTCCAGGCCCTGC +
Preference number: 4 (lower is better)
Translates to: SIFNMDRLDTARLGAVQRNARHS*GSSRPC
Trigger: GCAGGGCCTGGAGGACCCCCAGGAGTGCCTGGCATT...TCGTTGCACTGCTCCAAGTCTGGCTGTGTCCAGGCGGTCCATGTTGAAAATGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp CTAGACACTTCACAGAGGTTGATCTTTCTGGCCTGTAGGTGTCCCAGGGGCCTCCTCACCTGGGACCCCTaGTTTCCCAGCCAGGCCACT +
Preference number: 4 (lower is better)
Translates to: LDTSQRLIFLACRCPRGLLTWDP*FPSQAT
Trigger: AGTGGCCTGGCTGGGAAACCAGGGGTCCCAGGTGAG...GAGGCCCCTGGGACACCTACAGGCCAGAAAGATCAACCTCTGTGAAGTGTCTAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp TCCATTTTCAACATGGACCGCCTGGACACAGCCAGACTTGGAGCAGTGCAACGACCTCCACACCGCCGTTaGGCAGGTGCAAGCCTGCGA +
Preference number: 4 (lower is better)
Translates to: SIFNMDRLDTARLGAVQRPPHRR*AGASLR
Trigger: TCGCAGGCTTGCACCTGCCCAACGGCGGTGTGGAGG...TCGTTGCACTGCTCCAAGTCTGGCTGTGTCCAGGCGGTCCATGTTGAAAATGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp ATCCTCCATTTTCAACATGGACCGCCTGGACACAGCCAGACTTGGAGCAGTGCAAAGGCCGGTGTGGCATaGGCAGACAGCTCGCCCAGC +
Preference number: 4 (lower is better)
Translates to: ILHFQHGPPGHSQTWSSAKAGVA*ADSSPS
Trigger: GCTGGGCGAGCTGTCTGCCCATGCCACACCGGCCTT...TGCACTGCTCCAAGTCTGGCTGTGTCCAGGCGGTCCATGTTGAAAATGGAGGAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp ATCCTCCATTTTCAACATGGACCGCCTGGACACAGCCAGACTTGGAGCAGTGCAGGACTCACAAGGGGCTaGGCTGTGTGCCTCAGGGCC +
Preference number: 4 (lower is better)
Translates to: ILHFQHGPPGHSQTWSSAGLTRG*AVCLRA
Trigger: GGCCCTGAGGCACACAGCCCAGCCCCTTGTGAGTCC...TGCACTGCTCCAAGTCTGGCTGTGTCCAGGCGGTCCATGTTGAAAATGGAGGAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp ATCCTCCATTTTCAACATGGACCGCCTGGACACAGCCAGACTTGGAGCAGTGCATGGGGGCTGCAGTCCTaGCAGGGTGTCCACACTCGC +
Preference number: 4 (lower is better)
Translates to: ILHFQHGPPGHSQTWSSAWGLQS*QGVHTR
Trigger: GCGAGTGTGGACACCCTGCCAGGACTGCAGCCCCCA...TGCACTGCTCCAAGTCTGGCTGTGTCCAGGCGGTCCATGTTGAAAATGGAGGAT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp CCCCCAGCTCGCGTGCACCTTGTTCAGAGGGCCAAACGAGAGGTGCTCTGCCTTTTGGGGATACCTGGCTaGGGTGACAAGGATCCTCTT +
Preference number: 4 (lower is better)
Translates to: PPARVHLVQRAKREVLCLLGIPG*GDKDPL
Trigger: AAGAGGATCCTTGTCACCCCAGCCAGGTATCCCCAA...AAGGCAGAGCACCTCTCGTTTGGCCCTCTGAACAAGGTGCACGCGAGCTGGGGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR TCA 90 bp GTCCAGAGCCAACTCATTCCCAAGGGACCTGTTGGCACCCTTTCTCTCCCAGCCCACCACGGACATGTCTaGTGCCACAGCATCACCATG +
Preference number: 4 (lower is better)
Translates to: VQSQLIPKGPVGTLSLPAHHGHV*CHSITM
Trigger: CATGGTGATGCTGTGGCATCAGACATGTCCGTGGTG...GGCTGGGAGAGAAAGGGTGCCAACAGGTCCCTTGGGAATGAGTTGGCTCTGGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR GCA 90 bp CCAGCCCCTTCCAGAAACAATCTCAGCCTGCATGCAGGGAGAAAGCAAGTTAGTTGGTCCTGGCAACCCTaGTGCCCCTGGGACTCCCAC +
Preference number: 4 (lower is better)
Translates to: PAPSRNNLSLHAGRKQVSWSWQP*CPWDSH
Trigger: GTGGGAGTCCCAGGGGCAGCAGGGTTGCCAGGACCA...ACTAACTTGCTTTCTCCCTGCATGCAGGCTGAGATTGTTTCTGGAAGGGGCTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp GTCCAGAGCCAACTCATTCCCAAGGGACCTGTTGGCACCCTTTCTCTCCCAGCCCTGCCCATGGAGTCCTaGCTTTCCCATGCCTGGTTT +
Preference number: 4 (lower is better)
Translates to: VQSQLIPKGPVGTLSLPALPMES*LSHAWF
Trigger: AAACCAGGCATGGGAAAGCCAGGACTCCATGGGCAG...GGCTGGGAGAGAAAGGGTGCCAACAGGTCCCTTGGGAATGAGTTGGCTCTGGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp ATCCTCCATTTTCAACATGGACCGCCTGGACACAGCCAGACTTGGAGCAGTGCAGGGCCAGGCTGCCCATaGAGTCCTGGCTTTCCCATG +
Preference number: 4 (lower is better)
Translates to: ILHFQHGPPGHSQTWSSAGPGCP*SPGFPM
Trigger: CATGGGAAAGCCAGGACTCCATGGGCAGCCTGGCCC...TGCACTGCTCCAAGTCTGGCTGTGTCCAGGCGGTCCATGTTGAAAATGGAGGAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp ATACTTCTAGACACTTCACAGAGGTTGATCTTTCTGGCCTGTAGGTGTCCCAGGAAGCCCCGGCTGCCCTaGTGGCCCGACCTTGCCAGG +
Preference number: 4 (lower is better)
Translates to: ILLDTSQRLIFLACRCPRKPRLP*WPDLAR
Trigger: CCTGGCAAGGTCGGGCCACCAGGGCAGCCGGGGCTT...CCTGGGACACCTACAGGCCAGAAAGATCAACCTCTGTGAAGTGTCTAGAAGTAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp ATGGTTCTTATTAAGGAAAAGGAAGTGGGAGCCGTCTTCATCCCCCAGCTCGCGGGCCCTGGCACCCCTTaGGCACCTGGTTTTCCAGGG +
Preference number: 4 (lower is better)
Translates to: MVLIKEKEVGAVFIPQLAGPGTP*APGFPG
Trigger: CCCTGGAAAACCAGGTGCCCAAGGGGTGCCAGGGCC...CGCGAGCTGGGGGATGAAGACGGCTCCCACTTCCTTTTCCTTAATAAGAACCAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp GAAGTCAGCAGCCATCCTCCATTTTCAACATGGACCGCCTGGACACAGCCAGACTCCAGGAGGTCCTTTTaGGCCCACAGCTCCTGGCTC +
Preference number: 4 (lower is better)
Translates to: EVSSHPPFSTWTAWTQPDSRRSF*AHSSWL
Trigger: GAGCCAGGAGCTGTGGGCCCAAAAGGACCTCCTGGA...GTCTGGCTGTGTCCAGGCGGTCCATGTTGAAAATGGAGGATGGCTGCTGACTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp ATCCTCCATTTTCAACATGGACCGCCTGGACACAGCCAGACTTGGAGCAGTGCAGGGCCAGCTGGACCCTaGAGTCCTGGGATTCCTGAG +
Preference number: 4 (lower is better)
Translates to: ILHFQHGPPGHSQTWSSAGPAGP*SPGIPE
Trigger: CTCAGGAATCCCAGGACTCCAGGGTCCAGCTGGCCC...TGCACTGCTCCAAGTCTGGCTGTGTCCAGGCGGTCCATGTTGAAAATGGAGGAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp ATGGTTCTTATTAAGGAAAAGGAAGTGGGAGCCGTCTTCATCCCCCAGCTCGCGCCTCCACACCGCCGTTaGGCAGGTGCAAGCCTGCGA +
Preference number: 4 (lower is better)
Translates to: MVLIKEKEVGAVFIPQLAPPHRR*AGASLR
Trigger: TCGCAGGCTTGCACCTGCCCAACGGCGGTGTGGAGG...CGCGAGCTGGGGGATGAAGACGGCTCCCACTTCCTTTTCCTTAATAAGAACCAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp CTAGACACTTCACAGAGGTTGATCTTTCTGGCCTGTAGGTGTCCCAGGGGCCTCAGAGGTGCTCTGCCTTaGGGATACCTGGCTGGGGTG +
Preference number: 4 (lower is better)
Translates to: LDTSQRLIFLACRCPRGLRGALP*GYLAGV
Trigger: CACCCCAGCCAGGTATCCCCAAGGCAGAGCACCTCT...GAGGCCCCTGGGACACCTACAGGCCAGAAAGATCAACCTCTGTGAAGTGTCTAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR TCA 90 bp AGGTTCTTTGTAATTGAAAAGGTCGCTCTACCACTAAAGGGGAGGAGGCCAGGGAGGGATAGTAATGCCTaGGGGGCCCGGGAGGCCAGG +
Preference number: 4 (lower is better)
Translates to: RFFVIEKVALPLKGRRPGRDSNA*GAREAR
Trigger: CCTGGCCTCCCGGGCCCCTCAGGCATTACTATCCCT...CCCTGGCCTCCTCCCCTTTAGTGGTAGAGCGACCTTTTCAATTACAAAGAACCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR TCA 90 bp ATACTTCTAGACACTTCACAGAGGTTGATCTTTCTGGCCTGTAGGTGTCCCAGGCTCCAGGGCGACCCGTaGAACCCGGCTCACCCTTGG +
Preference number: 4 (lower is better)
Translates to: ILLDTSQRLIFLACRCPRLQGDP*NPAHPW
Trigger: CCAAGGGTGAGCCGGGTTTCACGGGTCGCCCTGGAG...CCTGGGACACCTACAGGCCAGAAAGATCAACCTCTGTGAAGTGTCTAGAAGTAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR TCA 90 bp ATCCTCCATTTTCAACATGGACCGCCTGGACACAGCCAGACTTGGAGCAGTGCACCTGCAGAGGAGCTCTaGTCGGGGAACAGGGCAGAA +
Preference number: 4 (lower is better)
Translates to: ILHFQHGPPGHSQTWSSAPAEEL*SGNRAE
Trigger: TTCTGCCCTGTTCCCCGATCAGAGCTCCTCTGCAGG...TGCACTGCTCCAAGTCTGGCTGTGTCCAGGCGGTCCATGTTGAAAATGGAGGAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR GCA 90 bp ATACTTCTAGACACTTCACAGAGGTTGATCTTTCTGGCCTGTAGGTGTCCCAGGCAGGGGGCCCACGTCTaGCAGGAAGCCCTGCAGACC +
Preference number: 4 (lower is better)
Translates to: ILLDTSQRLIFLACRCPRQGAHV*QEALQT
Trigger: GGTCTGCAGGGCTTCCTGGCAGACGTGGGCCCCCTG...CCTGGGACACCTACAGGCCAGAAAGATCAACCTCTGTGAAGTGTCTAGAAGTAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR GCA 90 bp ACTTCACAGAGGTTGATCTTTCTGGCCTGTAGGTGTCCCAGGGGCCTCTGTGCTGGGCAGGTGCAAGCCTaGGATGCCAGTCTCATCGAA +
Preference number: 4 (lower is better)
Translates to: TSQRLIFLACRCPRGLCAGQVQA*DASLIE
Trigger: TTCGATGAGACTGGCATCGCAGGCTTGCACCTGCCC...AGCACAGAGGCCCCTGGGACACCTACAGGCCAGAAAGATCAACCTCTGTGAAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR GCA 90 bp GAAGTGGGAGCCGTCTTCATCCCCCAGCTCGCGTGCACCTTGTTCAGAGGGCCAGAAACAATCTCAGCCTaGATGCAGGGAGAAAGCAAG +
Preference number: 4 (lower is better)
Translates to: EVGAVFIPQLACTLFRGPETISA*MQGESK
Trigger: CTTGCTTTCTCCCTGCATGCAGGCTGAGATTGTTTC...TGGCCCTCTGAACAAGGTGCACGCGAGCTGGGGGATGAAGACGGCTCCCACTTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR GCA 90 bp AGTCAGAAGTCAGCAGCCATCCTCCATTTTCAACATGGACCGCCTGGACACAGCTCAGGGCCTATGGGGTaGAGCCCTGACACTGCACAG +
Preference number: 4 (lower is better)
Translates to: SQKSAAILHFQHGPPGHSSGPMG*SPDTAQ
Trigger: CTGTGCAGTGTCAGGGCTGCACCCCATAGGCCCTGA...GCTGTGTCCAGGCGGTCCATGTTGAAAATGGAGGATGGCTGCTGACTTCTGACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR GCA 90 bp ATCCTCCATTTTCAACATGGACCGCCTGGACACAGCCAGACTTGGAGCAGTGCACTTTCCTCCAGCAGGTaGCATCAGGGAGCCAGTGGG +
Preference number: 4 (lower is better)
Translates to: ILHFQHGPPGHSQTWSSALSSSR*HQGASG
Trigger: CCCACTGGCTCCCTGATGGCACCTGCTGGAGGAAAG...TGCACTGCTCCAAGTCTGGCTGTGTCCAGGCGGTCCATGTTGAAAATGGAGGAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR GCA 90 bp AGTCAGAAGTCAGCAGCCATCCTCCATTTTCAACATGGACCGCCTGGACACAGCGGGCAACAGGCACTGTaGCCACCACGGACATGTCTG +
Preference number: 4 (lower is better)
Translates to: SQKSAAILHFQHGPPGHSGQQAL*PPRTCL
Trigger: CAGACATGTCCGTGGTGGGCACAGTGCCTGTTGCCC...GCTGTGTCCAGGCGGTCCATGTTGAAAATGGAGGATGGCTGCTGACTTCTGACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR GCA 90 bp TCCATTTTCAACATGGACCGCCTGGACACAGCCAGACTTGGAGCAGTGCAACGAGGGCAACAGGCACTGTaGCCACCACGGACATGTCTG +
Preference number: 4 (lower is better)
Translates to: SIFNMDRLDTARLGAVQRGQQAL*PPRTCL
Trigger: CAGACATGTCCGTGGTGGGCACAGTGCCTGTTGCCC...TCGTTGCACTGCTCCAAGTCTGGCTGTGTCCAGGCGGTCCATGTTGAAAATGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR GCA 90 bp GAAGTCAGCAGCCATCCTCCATTTTCAACATGGACCGCCTGGACACAGCCAGACTCCCAGGGGCCTCTGTaGTGCCCTCAAGCTAAACAG +
Preference number: 4 (lower is better)
Translates to: EVSSHPPFSTWTAWTQPDSQGPL*CPQAKQ
Trigger: CTGTTTAGCTTGAGGGCAGCACAGAGGCCCCTGGGA...GTCTGGCTGTGTCCAGGCGGTCCATGTTGAAAATGGAGGATGGCTGCTGACTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR GCA 90 bp GAAGTCAGCAGCCATCCTCCATTTTCAACATGGACCGCCTGGACACAGCCAGACGCTGATGGTCGATTCTaGCTCCGCCACCATCTGCAC +
Preference number: 4 (lower is better)
Translates to: EVSSHPPFSTWTAWTQPDADGRF*LRHHLH
Trigger: GTGCAGATGGTGGCGGAGGCAGAATCGACCATCAGC...GTCTGGCTGTGTCCAGGCGGTCCATGTTGAAAATGGAGGATGGCTGCTGACTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR GCA 90 bp AAACGTCCAGAGCCAACTCATTCCCAAGGGACCTGTTGGCACCCTTTCTCTCCCTTGGGAGGGGCATCCTaGCTGTTTCCTGCAGAGGAG +
Preference number: 4 (lower is better)
Translates to: KRPEPTHSQGTCWHPFSPLGGAS*LFPAEE
Trigger: CTCCTCTGCAGGAAACAGGCAGGATGCCCCTCCCAA...GGGAGAGAAAGGGTGCCAACAGGTCCCTTGGGAATGAGTTGGCTCTGGACGTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR GCA 90 bp CCAGCCCCTTCCAGAAACAATCTCAGCCTGCATGCAGGGAGAAAGCAAGTTAGTGCGAGGCCCTGCAGCTaGGGGGAAAGTGGCCATCTT +
Preference number: 4 (lower is better)
Translates to: PAPSRNNLSLHAGRKQVSARPCS*GESGHL
Trigger: AAGATGGCCACTTTCCCCGCAGCTGCAGGGCCTCGC...ACTAACTTGCTTTCTCCCTGCATGCAGGCTGAGATTGTTTCTGGAAGGGGCTGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR GCA 90 bp GTCCAGAGCCAACTCATTCCCAAGGGACCTGTTGGCACCCTTTCTCTCCCAGCCCCAGACTTGGAGCAGTaGAACGAGATCACAGACCGA +
Preference number: 4 (lower is better)
Translates to: VQSQLIPKGPVGTLSLPAPDLEQ*NEITDR
Trigger: TCGGTCTGTGATCTCGTTGCACTGCTCCAAGTCTGG...GGCTGGGAGAGAAAGGGTGCCAACAGGTCCCTTGGGAATGAGTTGGCTCTGGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp CCAGCCCCTTCCAGAAACAATCTCAGCCTGCATGCAGGGAGAAAGCAAGTTAGTCTGGATGTACTTCACTaGGGCATAGCCCGCCGCCCC +
Preference number: 4 (lower is better)
Translates to: PAPSRNNLSLHAGRKQVSLDVLH*GIARRP
Trigger: GGGGCGGCGGGCTATGCCCCAGTGAAGTACATCCAG...ACTAACTTGCTTTCTCCCTGCATGCAGGCTGAGATTGTTTCTGGAAGGGGCTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp CCACCATCTGCACTAGATACTTCTAGACACTTCACAGAGGTTGATCTTTCTGGCGAGGCCTCGATCACCTaGGGGCCCAGGCTCCCCCTG +
Preference number: 4 (lower is better)
Translates to: PPSALDTSRHFTEVDLSGEASIT*GPRLPL
Trigger: CAGGGGGAGCCTGGGCCCCCAGGTGATCGAGGCCTC...GCCAGAAAGATCAACCTCTGTGAAGTGTCTAGAAGTATCTAGTGCAGATGGTGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp ATCCTCCATTTTCAACATGGACCGCCTGGACACAGCCAGACTTGGAGCAGTGCAGAAGATGCCAGTGGCTaGGTTGTAGCCGCTGTGGCC +
Preference number: 4 (lower is better)
Translates to: ILHFQHGPPGHSQTWSSAEDASG*VVAAVA
Trigger: GGCCACAGCGGCTACAACCCAGCCACTGGCATCTTC...TGCACTGCTCCAAGTCTGGCTGTGTCCAGGCGGTCCATGTTGAAAATGGAGGAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp ATCCTCCATTTTCAACATGGACCGCCTGGACACAGCCAGACTTGGAGCAGTGCACCCCCGCGGGTTATGTaGGGCAGAGCAAGAATCCTG +
Preference number: 4 (lower is better)
Translates to: ILHFQHGPPGHSQTWSSAPPRVM*GRARIL
Trigger: CAGGATTCTTGCTCTGCCCCACATAACCCGCGGGGG...TGCACTGCTCCAAGTCTGGCTGTGTCCAGGCGGTCCATGTTGAAAATGGAGGAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp ATACTTCTAGACACTTCACAGAGGTTGATCTTTCTGGCCTGTAGGTGTCCCAGGCCCCACGTGGCGGGGTaGGGAGTTGAGCTCCCTCTC +
Preference number: 4 (lower is better)
Translates to: ILLDTSQRLIFLACRCPRPHVAG*GVELPL
Trigger: GAGAGGGAGCTCAACTCCCCACCCCGCCACGTGGGG...CCTGGGACACCTACAGGCCAGAAAGATCAACCTCTGTGAAGTGTCTAGAAGTAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp CCAGCCCCTTCCAGAAACAATCTCAGCCTGCATGCAGGGAGAAAGCAAGTTAGTCCATCAGGGAGCCAGTaGGAAGGGCTGTCTCCCCAC +
Preference number: 4 (lower is better)
Translates to: PAPSRNNLSLHAGRKQVSPSGSQ*EGLSPH
Trigger: GTGGGGAGACAGCCCTTCCCACTGGCTCCCTGATGG...ACTAACTTGCTTTCTCCCTGCATGCAGGCTGAGATTGTTTCTGGAAGGGGCTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp ATCCTCCATTTTCAACATGGACCGCCTGGACACAGCCAGACTTGGAGCAGTGCACACTCGCCACCTCGATaGTCCCCTCTTCTCCCTTCC +
Preference number: 4 (lower is better)
Translates to: ILHFQHGPPGHSQTWSSAHSPPR*SPLLPS
Trigger: GGAAGGGAGAAGAGGGGACCATCGAGGTGGCGAGTG...TGCACTGCTCCAAGTCTGGCTGTGTCCAGGCGGTCCATGTTGAAAATGGAGGAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR CAA 72 bp GCAGGTGGAAGGGGAGAAAGGGAAGAGTGCTCATGTTaGCTGATGGTCGATTCTGCCTCCGCCACCATCTGC +
Preference number: 4 (lower is better)
Translates to: AGGRGEREECSC*LMVDSASATIC
Trigger: GCAGATGGTGGCGGAGGCAGAATCGACCATCAGCAAACATGAGCACTCTTCCCTTTCTCCCCTTCCACCTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR CAA 72 bp ACCTTGTTCAGAGGGCCAAACGAGAGGTGCTCTGCCTaGGGGATACCTGGCTGGGGTGACAAGGATCCTCTT +
Preference number: 4 (lower is better)
Translates to: TLFRGPNERCSA*GIPGWGDKDPL
Trigger: AAGAGGATCCTTGTCACCCCAGCCAGGTATCCCCAAGGCAGAGCACCTCTCGTTTGGCCCTCTGAACAAGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR TCA 90 bp TTATCCACTCCGCTTGACGTAGGGACTGAGGGGTTGGGAGGGGCATCCTGCCTGACACTTCACAGAGGTTaGTCTTTCTGGCCTGTAGGT +
Preference number: 4 (lower is better)
Translates to: LSTPLDVGTEGLGGASCLTLHRG*SFWPVG
Trigger: ACCTACAGGCCAGAAAGATCAACCTCTGTGAAGTGT...CAGGCAGGATGCCCCTCCCAACCCCTCAGTCCCTACGTCAAGCGGAGTGGATAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR TCA 90 bp GAAGTGGGAGCCGTCTTCATCCCCCAGCTCGCGTGCACCTTGTTCAGAGGGCCACTTACAATTTTGTATTaGGAAAACCAGCCCAGCCCG +
Preference number: 4 (lower is better)
Translates to: EVGAVFIPQLACTLFRGPLTILY*ENQPSP
Trigger: CGGGCTGGGCTGGTTTTCTCAATACAAAATTGTAAG...TGGCCCTCTGAACAAGGTGCACGCGAGCTGGGGGATGAAGACGGCTCCCACTTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR TCA 90 bp GAAGTCAGCAGCCATCCTCCATTTTCAACATGGACCGCCTGGACACAGCCAGACGGAAGCCCCCACAGATaGACCCCTCTTGTACACACA +
Preference number: 4 (lower is better)
Translates to: EVSSHPPFSTWTAWTQPDGSPHR*TPLVHT
Trigger: TGTGTGTACAAGAGGGGTTCATCTGTGGGGGCTTCC...GTCTGGCTGTGTCCAGGCGGTCCATGTTGAAAATGGAGGATGGCTGCTGACTTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR TCA 90 bp GTCCAGAGCCAACTCATTCCCAAGGGACCTGTTGGCACCCTTTCTCTCCCAGCCAGATCACAGACCGAATaGCCCCAGTTCACACTTGGT +
Preference number: 4 (lower is better)
Translates to: VQSQLIPKGPVGTLSLPARSQTE*PQFTLG
Trigger: ACCAAGTGTGAACTGGGGTCATTCGGTCTGTGATCT...GGCTGGGAGAGAAAGGGTGCCAACAGGTCCCTTGGGAATGAGTTGGCTCTGGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR GCA 90 bp AGGTTCTTTGTAATTGAAAAGGTCGCTCTACCACTAAAGGGGAGGAGGCCAGGGCCAGGTACTGGCCTTTaGCCTCACGGAAGGGCGGTC +
Preference number: 4 (lower is better)
Translates to: RFFVIEKVALPLKGRRPGPGTGL*PHGRAV
Trigger: GACCGCCCTTCCGTGAGGGCAAAGGCCAGTACCTGG...CCCTGGCCTCCTCCCCTTTAGTGGTAGAGCGACCTTTTCAATTACAAAGAACCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR GCA 90 bp AAACGTCCAGAGCCAACTCATTCCCAAGGGACCTGTTGGCACCCTTTCTCTCCCGTCCTGGCTTTCCCATaGCTGGTTTTCCTGGGAAGC +
Preference number: 4 (lower is better)
Translates to: KRPEPTHSQGTCWHPFSPVLAFP*LVFLGS
Trigger: GCTTCCCAGGAAAACCAGGCATGGGAAAGCCAGGAC...GGGAGAGAAAGGGTGCCAACAGGTCCCTTGGGAATGAGTTGGCTCTGGACGTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR GCA 90 bp ATACTTCTAGACACTTCACAGAGGTTGATCTTTCTGGCCTGTAGGTGTCCCAGGCTGGGGGACCAGCCTTaGCCATCCGGGAGAAGCCAG +
Preference number: 4 (lower is better)
Translates to: ILLDTSQRLIFLACRCPRLGDQP*PSGRSQ
Trigger: CTGGCTTCTCCCGGATGGGCAAGGCTGGTCCCCCAG...CCTGGGACACCTACAGGCCAGAAAGATCAACCTCTGTGAAGTGTCTAGAAGTAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR GCA 90 bp CCAGCCCCTTCCAGAAACAATCTCAGCCTGCATGCAGGGAGAAAGCAAGTTAGTTGGTCCGACGGCATCTaGACCCAGACCTGGTCGTTG +
Preference number: 4 (lower is better)
Translates to: PAPSRNNLSLHAGRKQVSWSDGI*TQTWSL
Trigger: CAACGACCAGGTCTGGGTGCAGATGCCGTCGGACCA...ACTAACTTGCTTTCTCCCTGCATGCAGGCTGAGATTGTTTCTGGAAGGGGCTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR GCA 90 bp AGGTTCTTTGTAATTGAAAAGGTCGCTCTACCACTAAAGGGGAGGAGGCCAGGGCATCACCATGGGGGCTaGAGTCCTGGCAGGGTGTCC +
Preference number: 4 (lower is better)
Translates to: RFFVIEKVALPLKGRRPGHHHGG*SPGRVS
Trigger: GGACACCCTGCCAGGACTGCAGCCCCCATGGTGATG...CCCTGGCCTCCTCCCCTTTAGTGGTAGAGCGACCTTTTCAATTACAAAGAACCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR GCA 90 bp TCCATTTTCAACATGGACCGCCTGGACACAGCCAGACTTGGAGCAGTGCAACGATGCCTTCCCCATGGCTaGCACTGGAGCAGTGAAAGG +
Preference number: 4 (lower is better)
Translates to: SIFNMDRLDTARLGAVQRCLPHG*HWSSER
Trigger: CCTTTCACTGCTCCAGTGGCAGCCATGGGGAAGGCA...TCGTTGCACTGCTCCAAGTCTGGCTGTGTCCAGGCGGTCCATGTTGAAAATGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR GCA 90 bp ATCCTCCATTTTCAACATGGACCGCCTGGACACAGCCAGACTTGGAGCAGTGCACAAGCCCTCACAAACTaGCTTCCCCATGGCTGCCAC +
Preference number: 4 (lower is better)
Translates to: ILHFQHGPPGHSQTWSSAQALTN*LPHGCH
Trigger: GTGGCAGCCATGGGGAAGGCAGTTTGTGAGGGCTTG...TGCACTGCTCCAAGTCTGGCTGTGTCCAGGCGGTCCATGTTGAAAATGGAGGAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR GCA 90 bp ACTTCACAGAGGTTGATCTTTCTGGCCTGTAGGTGTCCCAGGGGCCTCTGTGCTAAACGAGAGGTGCTCTaGCTTGGGGATACCTGGCTG +
Preference number: 4 (lower is better)
Translates to: TSQRLIFLACRCPRGLCAKREVL*LGDTWL
Trigger: CAGCCAGGTATCCCCAAGGCAGAGCACCTCTCGTTT...AGCACAGAGGCCCCTGGGACACCTACAGGCCAGAAAGATCAACCTCTGTGAAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR GCA 90 bp ATCCTCCATTTTCAACATGGACCGCCTGGACACAGCCAGACTTGGAGCAGTGCAGGGCCAAACGAGAGGTaGTCTGCCTTGGGGATACCT +
Preference number: 4 (lower is better)
Translates to: ILHFQHGPPGHSQTWSSAGPNER*SALGIP
Trigger: AGGTATCCCCAAGGCAGAGCACCTCTCGTTTGGCCC...TGCACTGCTCCAAGTCTGGCTGTGTCCAGGCGGTCCATGTTGAAAATGGAGGAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR GCA 90 bp AGTCAGAAGTCAGCAGCCATCCTCCATTTTCAACATGGACCGCCTGGACACAGCTTGGGAGGGGCATCCTaGCTGTTTCCTGCAGAGGAG +
Preference number: 4 (lower is better)
Translates to: SQKSAAILHFQHGPPGHSLGGAS*LFPAEE
Trigger: CTCCTCTGCAGGAAACAGGCAGGATGCCCCTCCCAA...GCTGTGTCCAGGCGGTCCATGTTGAAAATGGAGGATGGCTGCTGACTTCTGACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp CCACCATCTGCACTAGATACTTCTAGACACTTCACAGAGGTTGATCTTTCTGGCGGTCCCCGGAGGCCCTaGTCCCCTCGTATTCCTGGC +
Preference number: 4 (lower is better)
Translates to: PPSALDTSRHFTEVDLSGGPRRP*SPRIPG
Trigger: GCCAGGAATACGAGGGGACCAGGGCCTCCGGGGACC...GCCAGAAAGATCAACCTCTGTGAAGTGTCTAGAAGTATCTAGTGCAGATGGTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp GTCCAGAGCCAACTCATTCCCAAGGGACCTGTTGGCACCCTTTCTCTCCCAGCCCACCCCTTGGGCACCTaGTTTTCCAGGGATAGTAAT +
Preference number: 4 (lower is better)
Translates to: VQSQLIPKGPVGTLSLPAHPLGT*FSRDSN
Trigger: ATTACTATCCCTGGAAAACCAGGTGCCCAAGGGGTG...GGCTGGGAGAGAAAGGGTGCCAACAGGTCCCTTGGGAATGAGTTGGCTCTGGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp ATACTTCTAGACACTTCACAGAGGTTGATCTTTCTGGCCTGTAGGTGTCCCAGGAATGCCAGGCACTCCTaGGGGTCCTCCAGGCCCTGC +
Preference number: 4 (lower is better)
Translates to: ILLDTSQRLIFLACRCPRNARHS*GSSRPC
Trigger: GCAGGGCCTGGAGGACCCCCAGGAGTGCCTGGCATT...CCTGGGACACCTACAGGCCAGAAAGATCAACCTCTGTGAAGTGTCTAGAAGTAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp AGGTTCTTTGTAATTGAAAAGGTCGCTCTACCACTAAAGGGGAGGAGGCCAGGGGGGCCAGCTGGACCCTaGAGTCCTGGGATTCCTGAG +
Preference number: 4 (lower is better)
Translates to: RFFVIEKVALPLKGRRPGGPAGP*SPGIPE
Trigger: CTCAGGAATCCCAGGACTCCAGGGTCCAGCTGGCCC...CCCTGGCCTCCTCCCCTTTAGTGGTAGAGCGACCTTTTCAATTACAAAGAACCT
56% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp CCAGCCCCTTCCAGAAACAATCTCAGCCTGCATGCAGGGAGAAAGCAAGTTAGTCCCAATAGGGCCAGCTaGACCCTGGAGTCCTGGGAT +
Preference number: 4 (lower is better)
Translates to: PAPSRNNLSLHAGRKQVSPNRAS*TLESWD
Trigger: ATCCCAGGACTCCAGGGTCCAGCTGGCCCTATTGGG...ACTAACTTGCTTTCTCCCTGCATGCAGGCTGAGATTGTTTCTGGAAGGGGCTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp CCAGCCCCTTCCAGAAACAATCTCAGCCTGCATGCAGGGAGAAAGCAAGTTAGTCCCCCGCGGGTTATGTaGGGCAGAGCAAGAATCCTG +
Preference number: 4 (lower is better)
Translates to: PAPSRNNLSLHAGRKQVSPPRVM*GRARIL
Trigger: CAGGATTCTTGCTCTGCCCCACATAACCCGCGGGGG...ACTAACTTGCTTTCTCCCTGCATGCAGGCTGAGATTGTTTCTGGAAGGGGCTGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp ATCCTCCATTTTCAACATGGACCGCCTGGACACAGCCAGACTTGGAGCAGTGCATCCCAAGGGACCTGTTaGCACCCTTTCTCTCCCAGC +
Preference number: 4 (lower is better)
Translates to: ILHFQHGPPGHSQTWSSASQGTC*HPFSPS
Trigger: GCTGGGAGAGAAAGGGTGCCAACAGGTCCCTTGGGA...TGCACTGCTCCAAGTCTGGCTGTGTCCAGGCGGTCCATGTTGAAAATGGAGGAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp AGTCAGAAGTCAGCAGCCATCCTCCATTTTCAACATGGACCGCCTGGACACAGCTCCCAAGGGACCTGTTaGCACCCTTTCTCTCCCAGC +
Preference number: 4 (lower is better)
Translates to: SQKSAAILHFQHGPPGHSSQGTC*HPFSPS
Trigger: GCTGGGAGAGAAAGGGTGCCAACAGGTCCCTTGGGA...GCTGTGTCCAGGCGGTCCATGTTGAAAATGGAGGATGGCTGCTGACTTCTGACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp AAACGTCCAGAGCCAACTCATTCCCAAGGGACCTGTTGGCACCCTTTCTCTCCCACCCCAGTTCACACTTaGTACAAGGAGTGGGGCTGG +
Preference number: 4 (lower is better)
Translates to: KRPEPTHSQGTCWHPFSPTPVHT*YKEWGW
Trigger: CCAGCCCCACTCCTTGTACCAAGTGTGAACTGGGGT...GGGAGAGAAAGGGTGCCAACAGGTCCCTTGGGAATGAGTTGGCTCTGGACGTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp GAAGTCAGCAGCCATCCTCCATTTTCAACATGGACCGCCTGGACACAGCCAGACTCAACATGGACCGCCTaGACACAGCCAGACTTGGAG +
Preference number: 4 (lower is better)
Translates to: EVSSHPPFSTWTAWTQPDSTWTA*TQPDLE
Trigger: CTCCAAGTCTGGCTGTGTCCAGGCGGTCCATGTTGA...GTCTGGCTGTGTCCAGGCGGTCCATGTTGAAAATGGAGGATGGCTGCTGACTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR TCA 90 bp AGTCAGAAGTCAGCAGCCATCCTCCATTTTCAACATGGACCGCCTGGACACAGCTATGGGGTGCAGCCCTaGCACTGCACAGACATTTGG +
Preference number: 4 (lower is better)
Translates to: SQKSAAILHFQHGPPGHSYGVQP*HCTDIW
Trigger: CCAAATGTCTGTGCAGTGTCAGGGCTGCACCCCATA...GCTGTGTCCAGGCGGTCCATGTTGAAAATGGAGGATGGCTGCTGACTTCTGACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR TCA 90 bp ATGGTTCTTATTAAGGAAAAGGAAGTGGGAGCCGTCTTCATCCCCCAGCTCGCGGGTTGGCAAGGAACCTaGAGGAACCCACTGCTCAGC +
Preference number: 4 (lower is better)
Translates to: MVLIKEKEVGAVFIPQLAGWQGT*RNPLLS
Trigger: GCTGAGCAGTGGGTTCCTTCAGGTTCCTTGCCAACC...CGCGAGCTGGGGGATGAAGACGGCTCCCACTTCCTTTTCCTTAATAAGAACCAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR TCA 90 bp CCCCCAGCTCGCGTGCACCTTGTTCAGAGGGCCAAACGAGAGGTGCTCTGCCTTTATCATTCCTCCTTTTaGAGAAGTGAGCAAACAGCC +
Preference number: 4 (lower is better)
Translates to: PPARVHLVQRAKREVLCLYHSSF*RSEQTA
Trigger: GGCTGTTTGCTCACTTCTTCAAAAGGAGGAATGATA...AAGGCAGAGCACCTCTCGTTTGGCCCTCTGAACAAGGTGCACGCGAGCTGGGGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR GCA 90 bp ACCATATGGTTCTTATTAAGGAAAAGGAAGTGGGAGCCGTCTTCATCCCCCAGCCCAGCAGGGCCAGGCTaGCCATGGAGTCCTGGCTTT +
Preference number: 4 (lower is better)
Translates to: TIWFLLRKRKWEPSSSPSPAGPG*PWSPGF
Trigger: AAAGCCAGGACTCCATGGGCAGCCTGGCCCTGCTGG...GCTGGGGGATGAAGACGGCTCCCACTTCCTTTTCCTTAATAAGAACCATATGGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR GCA 90 bp CTAGACACTTCACAGAGGTTGATCTTTCTGGCCTGTAGGTGTCCCAGGGGCCTCCATCCAAACCAGGTTTaGCTAAGCCAGCTGGACCAG +
Preference number: 4 (lower is better)
Translates to: LDTSQRLIFLACRCPRGLHPNQV*LSQLDQ
Trigger: CTGGTCCAGCTGGCTTAGGCAAACCTGGTTTGGATG...GAGGCCCCTGGGACACCTACAGGCCAGAAAGATCAACCTCTGTGAAGTGTCTAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR GCA 90 bp GAAGTCAGCAGCCATCCTCCATTTTCAACATGGACCGCCTGGACACAGCCAGACCATCCAAACCAGGTTTaGCTAAGCCAGCTGGACCAG +
Preference number: 4 (lower is better)
Translates to: EVSSHPPFSTWTAWTQPDHPNQV*LSQLDQ
Trigger: CTGGTCCAGCTGGCTTAGGCAAACCTGGTTTGGATG...GTCTGGCTGTGTCCAGGCGGTCCATGTTGAAAATGGAGGATGGCTGCTGACTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR GCA 90 bp AGGTTCTTTGTAATTGAAAAGGTCGCTCTACCACTAAAGGGGAGGAGGCCAGGGGGTGCAAGCCTGCGATaGCAGTCTCATCGAAGGCCC +
Preference number: 4 (lower is better)
Translates to: RFFVIEKVALPLKGRRPGGASLR*QSHRRP
Trigger: GGGCCTTCGATGAGACTGGCATCGCAGGCTTGCACC...CCCTGGCCTCCTCCCCTTTAGTGGTAGAGCGACCTTTTCAATTACAAAGAACCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR GCA 90 bp CCAGCCCCTTCCAGAAACAATCTCAGCCTGCATGCAGGGAGAAAGCAAGTTAGTGGGCAGGTGCAAGCCTaGGATGCCAGTCTCATCGAA +
Preference number: 4 (lower is better)
Translates to: PAPSRNNLSLHAGRKQVSGQVQA*DASLIE
Trigger: TTCGATGAGACTGGCATCGCAGGCTTGCACCTGCCC...ACTAACTTGCTTTCTCCCTGCATGCAGGCTGAGATTGTTTCTGGAAGGGGCTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR GCA 90 bp GTCCAGAGCCAACTCATTCCCAAGGGACCTGTTGGCACCCTTTCTCTCCCAGCCGAAACAATCTCAGCCTaGATGCAGGGAGAAAGCAAG +
Preference number: 4 (lower is better)
Translates to: VQSQLIPKGPVGTLSLPAETISA*MQGESK
Trigger: CTTGCTTTCTCCCTGCATGCAGGCTGAGATTGTTTC...GGCTGGGAGAGAAAGGGTGCCAACAGGTCCCTTGGGAATGAGTTGGCTCTGGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR GCA 90 bp ATACTTCTAGACACTTCACAGAGGTTGATCTTTCTGGCCTGTAGGTGTCCCAGGCATCACCATGGGGGCTaGAGTCCTGGCAGGGTGTCC +
Preference number: 4 (lower is better)
Translates to: ILLDTSQRLIFLACRCPRHHHGG*SPGRVS
Trigger: GGACACCCTGCCAGGACTGCAGCCCCCATGGTGATG...CCTGGGACACCTACAGGCCAGAAAGATCAACCTCTGTGAAGTGTCTAGAAGTAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR GCA 90 bp TCCATTTTCAACATGGACCGCCTGGACACAGCCAGACTTGGAGCAGTGCAACGAAAACGAGAGGTGCTCTaGCTTGGGGATACCTGGCTG +
Preference number: 4 (lower is better)
Translates to: SIFNMDRLDTARLGAVQRKREVL*LGDTWL
Trigger: CAGCCAGGTATCCCCAAGGCAGAGCACCTCTCGTTT...TCGTTGCACTGCTCCAAGTCTGGCTGTGTCCAGGCGGTCCATGTTGAAAATGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR GCA 90 bp AGTCAGAAGTCAGCAGCCATCCTCCATTTTCAACATGGACCGCCTGGACACAGCATCCTGCCTGTTTCCTaGAGAGGAGCTCTGATCGGG +
Preference number: 4 (lower is better)
Translates to: SQKSAAILHFQHGPPGHSILPVS*RGALIG
Trigger: CCCGATCAGAGCTCCTCTGCAGGAAACAGGCAGGAT...GCTGTGTCCAGGCGGTCCATGTTGAAAATGGAGGATGGCTGCTGACTTCTGACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR GCA 90 bp TCCATTTTCAACATGGACCGCCTGGACACAGCCAGACTTGGAGCAGTGCAACGAATCCTGCCTGTTTCCTaGAGAGGAGCTCTGATCGGG +
Preference number: 4 (lower is better)
Translates to: SIFNMDRLDTARLGAVQRILPVS*RGALIG
Trigger: CCCGATCAGAGCTCCTCTGCAGGAAACAGGCAGGAT...TCGTTGCACTGCTCCAAGTCTGGCTGTGTCCAGGCGGTCCATGTTGAAAATGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR GCA 90 bp GAAGTGGGAGCCGTCTTCATCCCCCAGCTCGCGTGCACCTTGTTCAGAGGGCCAGAGCTGATTAATTTCTaGCAATCAGAACCCATCCCT +
Preference number: 4 (lower is better)
Translates to: EVGAVFIPQLACTLFRGPELINF*QSEPIP
Trigger: AGGGATGGGTTCTGATTGGCAGAAATTAATCAGCTC...TGGCCCTCTGAACAAGGTGCACGCGAGCTGGGGGATGAAGACGGCTCCCACTTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR GCA 90 bp CCCCCAGCTCGCGTGCACCTTGTTCAGAGGGCCAAACGAGAGGTGCTCTGCCTTGAGCTGATTAATTTCTaGCAATCAGAACCCATCCCT +
Preference number: 4 (lower is better)
Translates to: PPARVHLVQRAKREVLCLELINF*QSEPIP
Trigger: AGGGATGGGTTCTGATTGGCAGAAATTAATCAGCTC...AAGGCAGAGCACCTCTCGTTTGGCCCTCTGAACAAGGTGCACGCGAGCTGGGGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp ATACTTCTAGACACTTCACAGAGGTTGATCTTTCTGGCCTGTAGGTGTCCCAGGGGGCCAGGCTGCCCATaGAGTCCTGGCTTTCCCATG +
Preference number: 4 (lower is better)
Translates to: ILLDTSQRLIFLACRCPRGPGCP*SPGFPM
Trigger: CATGGGAAAGCCAGGACTCCATGGGCAGCCTGGCCC...CCTGGGACACCTACAGGCCAGAAAGATCAACCTCTGTGAAGTGTCTAGAAGTAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp ACCATATGGTTCTTATTAAGGAAAAGGAAGTGGGAGCCGTCTTCATCCCCCAGCAGGCCACTAGGCCCCTaGTCACCTCGAATGCCAGGC +
Preference number: 4 (lower is better)
Translates to: TIWFLLRKRKWEPSSSPSRPLGP*SPRMPG
Trigger: GCCTGGCATTCGAGGTGACCAGGGGCCTAGTGGCCT...GCTGGGGGATGAAGACGGCTCCCACTTCCTTTTCCTTAATAAGAACCATATGGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp ACTTCACAGAGGTTGATCTTTCTGGCCTGTAGGTGTCCCAGGGGCCTCTGTGCTGGACACAGCCAGACTTaGAGCAGTGCAACGAGATCA +
Preference number: 4 (lower is better)
Translates to: TSQRLIFLACRCPRGLCAGHSQT*SSATRS
Trigger: TGATCTCGTTGCACTGCTCCAAGTCTGGCTGTGTCC...AGCACAGAGGCCCCTGGGACACCTACAGGCCAGAAAGATCAACCTCTGTGAAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp GGCTGCAGTCCTGGCAGGGTGTCCACACTCGCCACCTCGATGGTCCCCTCTTCTTTCTCAAGTGTCACTTaGGCAGATTTGGGTTATCAT +
Preference number: 4 (lower is better)
Translates to: GCSPGRVSTLATSMVPSSFSSVT*ADLGYH
Trigger: ATGATAACCCAAATCTGCCCAAGTGACACTTGAGAA...AGAAGAGGGGACCATCGAGGTGGCGAGTGTGGACACCCTGCCAGGACTGCAGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp CCCCCAGCTCGCGTGCACCTTGTTCAGAGGGCCAAACGAGAGGTGCTCTGCCTTTTGAGGAATGAAATTTaGCAGAAGCTCAGCTCTGTG +
Preference number: 4 (lower is better)
Translates to: PPARVHLVQRAKREVLCLLRNEI*QKLSSV
Trigger: CACAGAGCTGAGCTTCTGCCAAATTTCATTCCTCAA...AAGGCAGAGCACCTCTCGTTTGGCCCTCTGAACAAGGTGCACGCGAGCTGGGGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp CCAGCCCCTTCCAGAAACAATCTCAGCCTGCATGCAGGGAGAAAGCAAGTTAGTTCAGAGTCCCCAGCATaGCGTCCGTGGACGTGCTTT +
Preference number: 4 (lower is better)
Translates to: PAPSRNNLSLHAGRKQVSSESPA*RPWTCF
Trigger: AAAGCACGTCCACGGACGCCATGCTGGGGACTCTGA...ACTAACTTGCTTTCTCCCTGCATGCAGGCTGAGATTGTTTCTGGAAGGGGCTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000397799.2
3UTR CAA 72 bp CCATTTTCAACATGGACCGCCTGGACACAGCCAGACTaGGAGCAGTGCAACGAGATCACAGACCGAATGACC +
Preference number: 4 (lower is better)
Translates to: PFSTWTAWTQPD*EQCNEITDRMT
Trigger: GGTCATTCGGTCTGTGATCTCGTTGCACTGCTCCAAGTCTGGCTGTGTCCAGGCGGTCCATGTTGAAAATGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR TCA 90 bp AATTTCTGCCAATCAGAACCCATCCCTAACACATCAGATGATAGTGGCTTTGACCTCCAGGGCGACCCGTaGAACCCGGCTCACCCTTGG +
Preference number: 4 (lower is better)
Translates to: NFCQSEPIPNTSDDSGFDLQGDP*NPAHPW
Trigger: CCAAGGGTGAGCCGGGTTTCACGGGTCGCCCTGGAG...GTCAAAGCCACTATCATCTGATGTGTTAGGGATGGGTTCTGATTGGCAGAAATT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR TCA 90 bp AGTCAGAAGTCAGCAGCCATCCTCCATTTTCAACATGGACCGCCTGGACACAGCAGTGCTCATGTTTGCTaGTGGTCGATTCTGCCTCCG +
Preference number: 4 (lower is better)
Translates to: SQKSAAILHFQHGPPGHSSAHVC*WSILPP
Trigger: CGGAGGCAGAATCGACCATCAGCAAACATGAGCACT...GCTGTGTCCAGGCGGTCCATGTTGAAAATGGAGGATGGCTGCTGACTTCTGACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR TCA 90 bp GTCCAGAGCCAACTCATTCCCAAGGGACCTGTTGGCACCCTTTCTCTCCCAGCCCTTACAATTTTGTATTaGGAAAACCAGCCCAGCCCG +
Preference number: 4 (lower is better)
Translates to: VQSQLIPKGPVGTLSLPALTILY*ENQPSP
Trigger: CGGGCTGGGCTGGTTTTCTCAATACAAAATTGTAAG...GGCTGGGAGAGAAAGGGTGCCAACAGGTCCCTTGGGAATGAGTTGGCTCTGGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR TCA 90 bp GAAGTCAGCAGCCATCCTCCATTTTCAACATGGACCGCCTGGACACAGCCAGACAGATCACAGACCGAATaGCCCCAGTTCACACTTGGT +
Preference number: 4 (lower is better)
Translates to: EVSSHPPFSTWTAWTQPDRSQTE*PQFTLG
Trigger: ACCAAGTGTGAACTGGGGTCATTCGGTCTGTGATCT...GTCTGGCTGTGTCCAGGCGGTCCATGTTGAAAATGGAGGATGGCTGCTGACTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR GCA 90 bp CCAGCCCCTTCCAGAAACAATCTCAGCCTGCATGCAGGGAGAAAGCAAGTTAGTATGAACGTGAAGAGCTaGCTCCTGCCCCAGGTCTGT +
Preference number: 4 (lower is better)
Translates to: PAPSRNNLSLHAGRKQVSMNVKS*LLPQVC
Trigger: ACAGACCTGGGGCAGGAGGCAGCTCTTCACGTTCAT...ACTAACTTGCTTTCTCCCTGCATGCAGGCTGAGATTGTTTCTGGAAGGGGCTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp CCACCATCTGCACTAGATACTTCTAGACACTTCACAGAGGTTGATCTTTCTGGCGCATCCCATAGCCAGTaGGGCCTATCAGCCCAGGGG +
Preference number: 4 (lower is better)
Translates to: PPSALDTSRHFTEVDLSGASHSQ*GLSAQG
Trigger: CCCCTGGGCTGATAGGCCCCACTGGCTATGGGATGC...GCCAGAAAGATCAACCTCTGTGAAGTGTCTAGAAGTATCTAGTGCAGATGGTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp CCACCATCTGCACTAGATACTTCTAGACACTTCACAGAGGTTGATCTTTCTGGCAGGCCACTAGGCCCCTaGTCACCTCGAATGCCAGGC +
Preference number: 4 (lower is better)
Translates to: PPSALDTSRHFTEVDLSGRPLGP*SPRMPG
Trigger: GCCTGGCATTCGAGGTGACCAGGGGCCTAGTGGCCT...GCCAGAAAGATCAACCTCTGTGAAGTGTCTAGAAGTATCTAGTGCAGATGGTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp CTAGACACTTCACAGAGGTTGATCTTTCTGGCCTGTAGGTGTCCCAGGGGCCTCCATCGTAGGTATAGGTaGCCGGCACGTTGTTCTTGT +
Preference number: 4 (lower is better)
Translates to: LDTSQRLIFLACRCPRGLHRRYR*PARCSC
Trigger: ACAAGAACAACGTGCCGGCCACCTATACCTACGATG...GAGGCCCCTGGGACACCTACAGGCCAGAAAGATCAACCTCTGTGAAGTGTCTAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp ATACTTCTAGACACTTCACAGAGGTTGATCTTTCTGGCCTGTAGGTGTCCCAGGTGGAGTAGAGGCCGTTaGCCTGGTCCGACGGCATCT +
Preference number: 4 (lower is better)
Translates to: ILLDTSQRLIFLACRCPRWSRGR*PGPTAS
Trigger: AGATGCCGTCGGACCAGGCCAACGGCCTCTACTCCA...CCTGGGACACCTACAGGCCAGAAAGATCAACCTCTGTGAAGTGTCTAGAAGTAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp AGGTTCTTTGTAATTGAAAAGGTCGCTCTACCACTAAAGGGGAGGAGGCCAGGGTCCACTGTCATATGCTaGAGGTCCCAGGGGGAGCTG +
Preference number: 4 (lower is better)
Translates to: RFFVIEKVALPLKGRRPGSTVIC*RSQGEL
Trigger: CAGCTCCCCCTGGGACCTCCAGCATATGACAGTGGA...CCCTGGCCTCCTCCCCTTTAGTGGTAGAGCGACCTTTTCAATTACAAAGAACCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp CCACCATCTGCACTAGATACTTCTAGACACTTCACAGAGGTTGATCTTTCTGGCGCCACAGCATCACCATaGGGGCTGCAGTCCTGGCAG +
Preference number: 4 (lower is better)
Translates to: PPSALDTSRHFTEVDLSGATASP*GLQSWQ
Trigger: CTGCCAGGACTGCAGCCCCCATGGTGATGCTGTGGC...GCCAGAAAGATCAACCTCTGTGAAGTGTCTAGAAGTATCTAGTGCAGATGGTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp ATACTTCTAGACACTTCACAGAGGTTGATCTTTCTGGCCTGTAGGTGTCCCAGGCCAGCCCGCAGCAGGTaGAAGGGGAGAAAGGGAAGA +
Preference number: 4 (lower is better)
Translates to: ILLDTSQRLIFLACRCPRPARSR*KGRKGR
Trigger: TCTTCCCTTTCTCCCCTTCCACCTGCTGCGGGCTGG...CCTGGGACACCTACAGGCCAGAAAGATCAACCTCTGTGAAGTGTCTAGAAGTAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp ATACTTCTAGACACTTCACAGAGGTTGATCTTTCTGGCCTGTAGGTGTCCCAGGAGAGGTGCTCTGCCTTaGGGATACCTGGCTGGGGTG +
Preference number: 4 (lower is better)
Translates to: ILLDTSQRLIFLACRCPRRGALP*GYLAGV
Trigger: CACCCCAGCCAGGTATCCCCAAGGCAGAGCACCTCT...CCTGGGACACCTACAGGCCAGAAAGATCAACCTCTGTGAAGTGTCTAGAAGTAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp ATCCTCCATTTTCAACATGGACCGCCTGGACACAGCCAGACTTGGAGCAGTGCAGGACACAGCCAGACTTaGAGCAGTGCAACGAGATCA +
Preference number: 4 (lower is better)
Translates to: ILHFQHGPPGHSQTWSSAGHSQT*SSATRS
Trigger: TGATCTCGTTGCACTGCTCCAAGTCTGGCTGTGTCC...TGCACTGCTCCAAGTCTGGCTGTGTCCAGGCGGTCCATGTTGAAAATGGAGGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR TCA 90 bp AATTTCTGCCAATCAGAACCCATCCCTAACACATCAGATGATAGTGGCTTTGACGGCGGGGTGGGGAGTTaGGCTCCCTCTCAGCTCCTT +
Preference number: 4 (lower is better)
Translates to: NFCQSEPIPNTSDDSGFDGGVGS*APSQLL
Trigger: AAGGAGCTGAGAGGGAGCTCAACTCCCCACCCCGCC...GTCAAAGCCACTATCATCTGATGTGTTAGGGATGGGTTCTGATTGGCAGAAATT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR GCA 90 bp AGGTTCTTTGTAATTGAAAAGGTCGCTCTACCACTAAAGGGGAGGAGGCCAGGGGTCCTGGCTTTCCCATaGCTGGTTTTCCTGGGAAGC +
Preference number: 4 (lower is better)
Translates to: RFFVIEKVALPLKGRRPGVLAFP*LVFLGS
Trigger: GCTTCCCAGGAAAACCAGGCATGGGAAAGCCAGGAC...CCCTGGCCTCCTCCCCTTTAGTGGTAGAGCGACCTTTTCAATTACAAAGAACCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR GCA 90 bp CCACCATCTGCACTAGATACTTCTAGACACTTCACAGAGGTTGATCTTTCTGGCGGTGCAAGCCTGCGATaGCAGTCTCATCGAAGGCCC +
Preference number: 4 (lower is better)
Translates to: PPSALDTSRHFTEVDLSGGASLR*QSHRRP
Trigger: GGGCCTTCGATGAGACTGGCATCGCAGGCTTGCACC...GCCAGAAAGATCAACCTCTGTGAAGTGTCTAGAAGTATCTAGTGCAGATGGTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR GCA 90 bp TCCATTTTCAACATGGACCGCCTGGACACAGCCAGACTTGGAGCAGTGCAACGAGAAAGTGGCCATCTTTaGACGAGCAGGAATGTCCAC +
Preference number: 4 (lower is better)
Translates to: SIFNMDRLDTARLGAVQRESGHL*TSRNVH
Trigger: GTGGACATTCCTGCTCGTGCAAAGATGGCCACTTTC...TCGTTGCACTGCTCCAAGTCTGGCTGTGTCCAGGCGGTCCATGTTGAAAATGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp ACCATATGGTTCTTATTAAGGAAAAGGAAGTGGGAGCCGTCTTCATCCCCCAGCTCCACTGTCATATGCTaGAGGTCCCAGGGGGAGCTG +
Preference number: 4 (lower is better)
Translates to: TIWFLLRKRKWEPSSSPSSTVIC*RSQGEL
Trigger: CAGCTCCCCCTGGGACCTCCAGCATATGACAGTGGA...GCTGGGGGATGAAGACGGCTCCCACTTCCTTTTCCTTAATAAGAACCATATGGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR TCA 90 bp AAACGTCCAGAGCCAACTCATTCCCAAGGGACCTGTTGGCACCCTTTCTCTCCCCCACCAGGTATGGTTTaGGAGTCCTTAGTTGGTTTT +
Preference number: 4 (lower is better)
Translates to: KRPEPTHSQGTCWHPFSPPPGMV*ESLVGF
Trigger: AAAACCAACTAAGGACTCTCAAACCATACCTGGTGG...GGGAGAGAAAGGGTGCCAACAGGTCCCTTGGGAATGAGTTGGCTCTGGACGTTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR GCA 90 bp CCACCATCTGCACTAGATACTTCTAGACACTTCACAGAGGTTGATCTTTCTGGCCAGGGGCCTCTGTGCTaGCCTCAAGCTAAACAGCCA +
Preference number: 4 (lower is better)
Translates to: PPSALDTSRHFTEVDLSGQGPLC*PQAKQP
Trigger: TGGCTGTTTAGCTTGAGGGCAGCACAGAGGCCCCTG...GCCAGAAAGATCAACCTCTGTGAAGTGTCTAGAAGTATCTAGTGCAGATGGTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR GCA 90 bp TGTAGAGAGCTAAGCTTCCTATACCAAGTTAGAAGTGAAATGACTAGTGGAAAACCGAGCGCGAGGCCCTaGAGCTGCGGGGAAAGTGGC +
Preference number: 4 (lower is better)
Translates to: CRELSFLYQVRSEMTSGKPSARP*SCGESG
Trigger: GCCACTTTCCCCGCAGCTGCAGGGCCTCGCGCTCGG...TTTTCCACTAGTCATTTCACTTCTAACTTGGTATAGGAAGCTTAGCTCTCTACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp CCAGCCCCTTCCAGAAACAATCTCAGCCTGCATGCAGGGAGAAAGCAAGTTAGTCACCCCTTGGGCACCTaGTTTTCCAGGGATAGTAAT +
Preference number: 4 (lower is better)
Translates to: PAPSRNNLSLHAGRKQVSHPLGT*FSRDSN
Trigger: ATTACTATCCCTGGAAAACCAGGTGCCCAAGGGGTG...ACTAACTTGCTTTCTCCCTGCATGCAGGCTGAGATTGTTTCTGGAAGGGGCTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp TTATCCACTCCGCTTGACGTAGGGACTGAGGGGTTGGGAGGGGCATCCTGCCTGCATACACCCACCATATaGTTCTTATTAAGGAAAAGG +
Preference number: 4 (lower is better)
Translates to: LSTPLDVGTEGLGGASCLHTPTI*FLLRKR
Trigger: CCTTTTCCTTAATAAGAACCATATGGTGGGTGTATG...CAGGCAGGATGCCCCTCCCAACCCCTCAGTCCCTACGTCAAGCGGAGTGGATAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp CCACCATCTGCACTAGATACTTCTAGACACTTCACAGAGGTTGATCTTTCTGGCCCAGCCTTAGCCTCCTaGGCCCTAGTCCTGCTTAGA +
Preference number: 4 (lower is better)
Translates to: PPSALDTSRHFTEVDLSGPALAS*ALVLLR
Trigger: TCTAAGCAGGACTAGGGCCCAGGAGGCTAAGGCTGG...GCCAGAAAGATCAACCTCTGTGAAGTGTCTAGAAGTATCTAGTGCAGATGGTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp ATGGTTCTTATTAAGGAAAAGGAAGTGGGAGCCGTCTTCATCCCCCAGCTCGCGTCCGTGGGCTCCCATTaGGAGCTGATTAATTTCTGC +
Preference number: 4 (lower is better)
Translates to: MVLIKEKEVGAVFIPQLASVGSH*ELINFC
Trigger: GCAGAAATTAATCAGCTCCCAATGGGAGCCCACGGA...CGCGAGCTGGGGGATGAAGACGGCTCCCACTTCCTTTTCCTTAATAAGAACCAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR TCA 90 bp AAACGTCCAGAGCCAACTCATTCCCAAGGGACCTGTTGGCACCCTTTCTCTCCCGAGGTTCTTTGTAATTaGAAAGGTCGCTCTACCACT +
Preference number: 4 (lower is better)
Translates to: KRPEPTHSQGTCWHPFSPEVLCN*KGRSTT
Trigger: AGTGGTAGAGCGACCTTTTCAATTACAAAGAACCTC...GGGAGAGAAAGGGTGCCAACAGGTCCCTTGGGAATGAGTTGGCTCTGGACGTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR TCA 90 bp TCCATTTTCAACATGGACCGCCTGGACACAGCCAGACTTGGAGCAGTGCAACGACTCCTTTTGAAGAAGTaGGCAAACAGCCTGCTTTGT +
Preference number: 4 (lower is better)
Translates to: SIFNMDRLDTARLGAVQRLLLKK*ANSLLC
Trigger: ACAAAGCAGGCTGTTTGCTCACTTCTTCAAAAGGAG...TCGTTGCACTGCTCCAAGTCTGGCTGTGTCCAGGCGGTCCATGTTGAAAATGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR TCA 90 bp GAAGTCAGCAGCCATCCTCCATTTTCAACATGGACCGCCTGGACACAGCCAGACTATCATTCCTCCTTTTaGAGAAGTGAGCAAACAGCC +
Preference number: 4 (lower is better)
Translates to: EVSSHPPFSTWTAWTQPDYHSSF*RSEQTA
Trigger: GGCTGTTTGCTCACTTCTTCAAAAGGAGGAATGATA...GTCTGGCTGTGTCCAGGCGGTCCATGTTGAAAATGGAGGATGGCTGCTGACTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR GCA 90 bp CCACCATCTGCACTAGATACTTCTAGACACTTCACAGAGGTTGATCTTTCTGGCATGAACGTGAAGAGCTaGCTCCTGCCCCAGGTCTGT +
Preference number: 4 (lower is better)
Translates to: PPSALDTSRHFTEVDLSGMNVKS*LLPQVC
Trigger: ACAGACCTGGGGCAGGAGGCAGCTCTTCACGTTCAT...GCCAGAAAGATCAACCTCTGTGAAGTGTCTAGAAGTATCTAGTGCAGATGGTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp TGTAGAGAGCTAAGCTTCCTATACCAAGTTAGAAGTGAAATGACTAGTGGAAAAGAATCCTGGGGGCCCTaGCACCCCTTGGGCACCTGG +
Preference number: 4 (lower is better)
Translates to: CRELSFLYQVRSEMTSGKESWGP*HPLGTW
Trigger: CCAGGTGCCCAAGGGGTGCCAGGGCCCCCAGGATTC...TTTTCCACTAGTCATTTCACTTCTAACTTGGTATAGGAAGCTTAGCTCTCTACA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
3UTR CAA 72 bp GAAGAGGTTGAGCGAAGAACCCCCACCAGGTATGGTTaGAGAGTCCTTAGTTGGTTTTCTTGGGCGTTAGGT +
Preference number: 4 (lower is better)
Translates to: EEVERRTPTRYG*RVLSWFSWALG
Trigger: ACCTAACGCCCAAGAAAACCAACTAAGGACTCTCAAACCATACCTGGTGGGGGTTCTTCGCTCAACCTCTTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR TCA 90 bp AATTTCTGCCAATCAGAACCCATCCCTAACACATCAGATGATAGTGGCTTTGACGGTTGGCAAGGAACCTaGAGGAACCCACTGCTCAGC +
Preference number: 4 (lower is better)
Translates to: NFCQSEPIPNTSDDSGFDGWQGT*RNPLLS
Trigger: GCTGAGCAGTGGGTTCCTTCAGGTTCCTTGCCAACC...GTCAAAGCCACTATCATCTGATGTGTTAGGGATGGGTTCTGATTGGCAGAAATT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR GCA 90 bp ATACTTCTAGACACTTCACAGAGGTTGATCTTTCTGGCCTGTAGGTGTCCCAGGGAAAGTGGCCATCTTTaGACGAGCAGGAATGTCCAC +
Preference number: 4 (lower is better)
Translates to: ILLDTSQRLIFLACRCPRESGHL*TSRNVH
Trigger: GTGGACATTCCTGCTCGTGCAAAGATGGCCACTTTC...CCTGGGACACCTACAGGCCAGAAAGATCAACCTCTGTGAAGTGTCTAGAAGTAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp CCACCATCTGCACTAGATACTTCTAGACACTTCACAGAGGTTGATCTTTCTGGCCCTTTCTGCATGGGCTaGATGTACTTCACTGGGGCA +
Preference number: 4 (lower is better)
Translates to: PPSALDTSRHFTEVDLSGPFCMG*MYFTGA
Trigger: TGCCCCAGTGAAGTACATCCAGCCCATGCAGAAAGG...GCCAGAAAGATCAACCTCTGTGAAGTGTCTAGAAGTATCTAGTGCAGATGGTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp AATTTCTGCCAATCAGAACCCATCCCTAACACATCAGATGATAGTGGCTTTGACCCCCATGGCTGCCACTaGAGCAGTGAAAGGGAGGTT +
Preference number: 4 (lower is better)
Translates to: NFCQSEPIPNTSDDSGFDPHGCH*SSEREV
Trigger: AACCTCCCTTTCACTGCTCCAGTGGCAGCCATGGGG...GTCAAAGCCACTATCATCTGATGTGTTAGGGATGGGTTCTGATTGGCAGAAATT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp ATCCTCCATTTTCAACATGGACCGCCTGGACACAGCCAGACTTGGAGCAGTGCATTGAGAGTCCTTAGTTaGTTTTCTTGGGCGTTAGGT +
Preference number: 4 (lower is better)
Translates to: ILHFQHGPPGHSQTWSSALRVLS*FSWALG
Trigger: ACCTAACGCCCAAGAAAACCAACTAAGGACTCTCAA...TGCACTGCTCCAAGTCTGGCTGTGTCCAGGCGGTCCATGTTGAAAATGGAGGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR TCA 90 bp ATGGTTCTTATTAAGGAAAAGGAAGTGGGAGCCGTCTTCATCCCCCAGCTCGCGGAGGTTCTTTGTAATTaGAAAGGTCGCTCTACCACT +
Preference number: 4 (lower is better)
Translates to: MVLIKEKEVGAVFIPQLAEVLCN*KGRSTT
Trigger: AGTGGTAGAGCGACCTTTTCAATTACAAAGAACCTC...CGCGAGCTGGGGGATGAAGACGGCTCCCACTTCCTTTTCCTTAATAAGAACCAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR TCA 90 bp AATTTCTGCCAATCAGAACCCATCCCTAACACATCAGATGATAGTGGCTTTGACTATGGGGTGCAGCCCTaGCACTGCACAGACATTTGG +
Preference number: 4 (lower is better)
Translates to: NFCQSEPIPNTSDDSGFDYGVQP*HCTDIW
Trigger: CCAAATGTCTGTGCAGTGTCAGGGCTGCACCCCATA...GTCAAAGCCACTATCATCTGATGTGTTAGGGATGGGTTCTGATTGGCAGAAATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp CCACCATCTGCACTAGATACTTCTAGACACTTCACAGAGGTTGATCTTTCTGGCCATCGTAGGTATAGGTaGCCGGCACGTTGTTCTTGT +
Preference number: 4 (lower is better)
Translates to: PPSALDTSRHFTEVDLSGHRRYR*PARCSC
Trigger: ACAAGAACAACGTGCCGGCCACCTATACCTACGATG...GCCAGAAAGATCAACCTCTGTGAAGTGTCTAGAAGTATCTAGTGCAGATGGTGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp AGTCAGAAGTCAGCAGCCATCCTCCATTTTCAACATGGACCGCCTGGACACAGCTCACTTGGGCAGATTTaGGTTATCATTCCTCCTTTT +
Preference number: 4 (lower is better)
Translates to: SQKSAAILHFQHGPPGHSSLGQI*VIIPPF
Trigger: AAAAGGAGGAATGATAACCCAAATCTGCCCAAGTGA...GCTGTGTCCAGGCGGTCCATGTTGAAAATGGAGGATGGCTGCTGACTTCTGACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp AGTCAGAAGTCAGCAGCCATCCTCCATTTTCAACATGGACCGCCTGGACACAGCTTCTCAAGTGTCACTTaGGCAGATTTGGGTTATCAT +
Preference number: 4 (lower is better)
Translates to: SQKSAAILHFQHGPPGHSFSSVT*ADLGYH
Trigger: ATGATAACCCAAATCTGCCCAAGTGACACTTGAGAA...GCTGTGTCCAGGCGGTCCATGTTGAAAATGGAGGATGGCTGCTGACTTCTGACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp AAACGTCCAGAGCCAACTCATTCCCAAGGGACCTGTTGGCACCCTTTCTCTCCCCTTAGTTGGTTTTCTTaGGCGTTAGGTAGTAAGAAA +
Preference number: 4 (lower is better)
Translates to: KRPEPTHSQGTCWHPFSPLSWFS*ALGSKK
Trigger: TTTCTTACTACCTAACGCCCAAGAAAACCAACTAAG...GGGAGAGAAAGGGTGCCAACAGGTCCCTTGGGAATGAGTTGGCTCTGGACGTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR TCA 90 bp ACCATATGGTTCTTATTAAGGAAAAGGAAGTGGGAGCCGTCTTCATCCCCCAGCCTCCTTTTGAAGAAGTaGGCAAACAGCCTGCTTTGT +
Preference number: 4 (lower is better)
Translates to: TIWFLLRKRKWEPSSSPSLLLKK*ANSLLC
Trigger: ACAAAGCAGGCTGTTTGCTCACTTCTTCAAAAGGAG...GCTGGGGGATGAAGACGGCTCCCACTTCCTTTTCCTTAATAAGAACCATATGGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp TGTAGAGAGCTAAGCTTCCTATACCAAGTTAGAAGTGAAATGACTAGTGGAAAATCCAGGAGGTCCTTTTaGGCCCACAGCTCCTGGCTC +
Preference number: 4 (lower is better)
Translates to: CRELSFLYQVRSEMTSGKSRRSF*AHSSWL
Trigger: GAGCCAGGAGCTGTGGGCCCAAAAGGACCTCCTGGA...TTTTCCACTAGTCATTTCACTTCTAACTTGGTATAGGAAGCTTAGCTCTCTACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp TGTAGAGAGCTAAGCTTCCTATACCAAGTTAGAAGTGAAATGACTAGTGGAAAACCCAATAGGGCCAGCTaGACCCTGGAGTCCTGGGAT +
Preference number: 4 (lower is better)
Translates to: CRELSFLYQVRSEMTSGKPNRAS*TLESWD
Trigger: ATCCCAGGACTCCAGGGTCCAGCTGGCCCTATTGGG...TTTTCCACTAGTCATTTCACTTCTAACTTGGTATAGGAAGCTTAGCTCTCTACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp AATTTCTGCCAATCAGAACCCATCCCTAACACATCAGATGATAGTGGCTTTGACTTAAGGAAAAGGAAGTaGGAGCCGTCTTCATCCCCC +
Preference number: 4 (lower is better)
Translates to: NFCQSEPIPNTSDDSGFDLRKRK*EPSSSP
Trigger: GGGGGATGAAGACGGCTCCCACTTCCTTTTCCTTAA...GTCAAAGCCACTATCATCTGATGTGTTAGGGATGGGTTCTGATTGGCAGAAATT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp ATGGTTCTTATTAAGGAAAAGGAAGTGGGAGCCGTCTTCATCCCCCAGCTCGCGCATACACCCACCATATaGTTCTTATTAAGGAAAAGG +
Preference number: 4 (lower is better)
Translates to: MVLIKEKEVGAVFIPQLAHTPTI*FLLRKR
Trigger: CCTTTTCCTTAATAAGAACCATATGGTGGGTGTATG...CGCGAGCTGGGGGATGAAGACGGCTCCCACTTCCTTTTCCTTAATAAGAACCAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR TCA 90 bp TGTAGAGAGCTAAGCTTCCTATACCAAGTTAGAAGTGAAATGACTAGTGGAAAAGGAAGCCCCCACAGATaGACCCCTCTTGTACACACA +
Preference number: 4 (lower is better)
Translates to: CRELSFLYQVRSEMTSGKGSPHR*TPLVHT
Trigger: TGTGTGTACAAGAGGGGTTCATCTGTGGGGGCTTCC...TTTTCCACTAGTCATTTCACTTCTAACTTGGTATAGGAAGCTTAGCTCTCTACA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp TGTAGAGAGCTAAGCTTCCTATACCAAGTTAGAAGTGAAATGACTAGTGGAAAAACAGCCTGCTTTGTTTaGAGAAGTTGTGGGCAGGGG +
Preference number: 4 (lower is better)
Translates to: CRELSFLYQVRSEMTSGKTACFV*RSCGQG
Trigger: CCCCTGCCCACAACTTCTCCAAACAAAGCAGGCTGT...TTTTCCACTAGTCATTTCACTTCTAACTTGGTATAGGAAGCTTAGCTCTCTACA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp AATTTCTGCCAATCAGAACCCATCCCTAACACATCAGATGATAGTGGCTTTGACTTGAGAGTCCTTAGTTaGTTTTCTTGGGCGTTAGGT +
Preference number: 4 (lower is better)
Translates to: NFCQSEPIPNTSDDSGFDLRVLS*FSWALG
Trigger: ACCTAACGCCCAAGAAAACCAACTAAGGACTCTCAA...GTCAAAGCCACTATCATCTGATGTGTTAGGGATGGGTTCTGATTGGCAGAAATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp TGTAGAGAGCTAAGCTTCCTATACCAAGTTAGAAGTGAAATGACTAGTGGAAAATCCGTGGGCTCCCATTaGGAGCTGATTAATTTCTGC +
Preference number: 4 (lower is better)
Translates to: CRELSFLYQVRSEMTSGKSVGSH*ELINFC
Trigger: GCAGAAATTAATCAGCTCCCAATGGGAGCCCACGGA...TTTTCCACTAGTCATTTCACTTCTAACTTGGTATAGGAAGCTTAGCTCTCTACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp AATTTCTGCCAATCAGAACCCATCCCTAACACATCAGATGATAGTGGCTTTGACCTTAGTTGGTTTTCTTaGGCGTTAGGTAGTAAGAAA +
Preference number: 4 (lower is better)
Translates to: NFCQSEPIPNTSDDSGFDLSWFS*ALGSKK
Trigger: TTTCTTACTACCTAACGCCCAAGAAAACCAACTAAG...GTCAAAGCCACTATCATCTGATGTGTTAGGGATGGGTTCTGATTGGCAGAAATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp TGTAGAGAGCTAAGCTTCCTATACCAAGTTAGAAGTGAAATGACTAGTGGAAAATTGAGGAATGAAATTTaGCAGAAGCTCAGCTCTGTG +
Preference number: 4 (lower is better)
Translates to: CRELSFLYQVRSEMTSGKLRNEI*QKLSSV
Trigger: CACAGAGCTGAGCTTCTGCCAAATTTCATTCCTCAA...TTTTCCACTAGTCATTTCACTTCTAACTTGGTATAGGAAGCTTAGCTCTCTACA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CCA 90 bp TGTAGAGAGCTAAGCTTCCTATACCAAGTTAGAAGTGAAATGACTAGTGGAAAATCACTTGGGCAGATTTaGGTTATCATTCCTCCTTTT +
Preference number: 4 (lower is better)
Translates to: CRELSFLYQVRSEMTSGKSLGQI*VIIPPF
Trigger: AAAAGGAGGAATGATAACCCAAATCTGCCCAAGTGA...TTTTCCACTAGTCATTTCACTTCTAACTTGGTATAGGAAGCTTAGCTCTCTACA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS GCA 90 bp GCCCTGGTGGCCCGACCTTGCCAGGGAGCCCTGGGGGACCAGCCTTaGCCATCCGGGAGAAGCCAGGGGGCCCAGCAGGGCCAGGCTGCC +
Preference number: 5 (lower is better)
Translates to: ALVARPCQGALGDQP*PSGRSQGAQQGQAA
Trigger: GGCAGCCTGGCCCTGCTGGGCCCCCTGGCTTCTCCCGGATGGGCAAGGCTGGTCCCCCAGGGCTCCCTGGCAAGGTCGGGCCACCAGGGC
76% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENST00000303143.9
ENST00000397799.2
ENST00000481785.1
CDS CCA 90 bp GGCCTTTGCCCTCACGGAAGGGCGGTCCCACAGGTCCTTTCTGCATaGGCTGGATGTACTTCACTGGGGCATAGCCCGCCGCCCCACCGG +
Preference number: 5 (lower is better)
Translates to: GLCPHGRAVPQVLSA*AGCTSLGHSPPPHR
Trigger: CCGGTGGGGCGGCGGGCTATGCCCCAGTGAAGTACATCCAGCCCATGCAGAAAGGACCTGTGGGACCGCCCTTCCGTGAGGGCAAAGGCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CAA 90 bp CCCCCAGCTCGCGTGCACCTTGTTCAGAGGGCCAAACGAGAGGTGCTCTGCCTTGGGCCCTGGCACCCCTaGGGCACCTGGTTTTCCAGG +
Preference number: 5 (lower is better)
Translates to: PPARVHLVQRAKREVLCLGPWHP*GTWFSR
Trigger: CCTGGAAAACCAGGTGCCCAAGGGGTGCCAGGGCCC...AAGGCAGAGCACCTCTCGTTTGGCCCTCTGAACAAGGTGCACGCGAGCTGGGGG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CAA 90 bp CCTTCAGGGCCCAGCAGAGGCCAGGACTCACAAGGGGCTGGGCTGTGTGCCTCAAGGGCCACCCACACGTaGGTGCCCTTGACGTGCACA +
Preference number: 5 (lower is better)
Translates to: PSGPSRGQDSQGAGLCASRATHT*VPLTCT
Trigger: TGTGCACGTCAAGGGCACCAACGTGTGGGTGGCCCT...TGAGGCACACAGCCCAGCCCCTTGTGAGTCCTGGCCTCTGCTGGGCCCTGAAGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CAA 90 bp GGCTGCAGTCCTGGCAGGGTGTCCACACTCGCCACCTCGATGGTCCCCTCTTCTCTCCAGGAGGTCCTTTaGGGCCCACAGCTCCTGGCT +
Preference number: 5 (lower is better)
Translates to: GCSPGRVSTLATSMVPSSLQEVL*GPQLLA
Trigger: AGCCAGGAGCTGTGGGCCCAAAAGGACCTCCTGGAG...AGAAGAGGGGACCATCGAGGTGGCGAGTGTGGACACCCTGCCAGGACTGCAGCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CAA 90 bp CCCCCAGCTCGCGTGCACCTTGTTCAGAGGGCCAAACGAGAGGTGCTCTGCCTTTCCAGGTACTGGCCTTaGCCCTCACGGAAGGGCGGT +
Preference number: 5 (lower is better)
Translates to: PPARVHLVQRAKREVLCLSRYWP*PSRKGG
Trigger: ACCGCCCTTCCGTGAGGGCAAAGGCCAGTACCTGGA...AAGGCAGAGCACCTCTCGTTTGGCCCTCTGAACAAGGTGCACGCGAGCTGGGGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CAA 90 bp CCTTCAGGGCCCAGCAGAGGCCAGGACTCACAAGGGGCTGGGCTGTGTGCCTCAACTCCATTATCCCCCTaGAGGCCTCGATCACCTGGG +
Preference number: 5 (lower is better)
Translates to: PSGPSRGQDSQGAGLCASTPLSP*RPRSPG
Trigger: CCCAGGTGATCGAGGCCTCAAGGGGGATAATGGAGT...TGAGGCACACAGCCCAGCCCCTTGTGAGTCCTGGCCTCTGCTGGGCCCTGAAGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CAA 90 bp ACTTCACAGAGGTTGATCTTTCTGGCCTGTAGGTGTCCCAGGGGCCTCTGTGCTCCCTCCACACCGCCGTaGGGCAGGTGCAAGCCTGCG +
Preference number: 5 (lower is better)
Translates to: TSQRLIFLACRCPRGLCAPSTPP*GRCKPA
Trigger: CGCAGGCTTGCACCTGCCCAACGGCGGTGTGGAGGG...AGCACAGAGGCCCCTGGGACACCTACAGGCCAGAAAGATCAACCTCTGTGAAGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CAA 90 bp TTATCCACTCCGCTTGACGTAGGGACTGAGGGGTTGGGAGGGGCATCCTGCCTGGCCGGCACGTTGTTCTaGTACAGGGCCACCCACACG +
Preference number: 5 (lower is better)
Translates to: LSTPLDVGTEGLGGASCLAGTLF*YRATHT
Trigger: CGTGTGGGTGGCCCTGTACAAGAACAACGTGCCGGC...CAGGCAGGATGCCCCTCCCAACCCCTCAGTCCCTACGTCAAGCGGAGTGGATAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CAA 90 bp TTATCCACTCCGCTTGACGTAGGGACTGAGGGGTTGGGAGGGGCATCCTGCCTGGAGAGGTGCTCTGCCTaGGGGATACCTGGCTGGGGT +
Preference number: 5 (lower is better)
Translates to: LSTPLDVGTEGLGGASCLERCSA*GIPGWG
Trigger: ACCCCAGCCAGGTATCCCCAAGGCAGAGCACCTCTC...CAGGCAGGATGCCCCTCCCAACCCCTCAGTCCCTACGTCAAGCGGAGTGGATAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CAA 90 bp CCCCCAGCTCGCGTGCACCTTGTTCAGAGGGCCAAACGAGAGGTGCTCTGCCTTGACCCCAGTTCACACTaGGTACAAGGAGTGGGGCTG +
Preference number: 5 (lower is better)
Translates to: PPARVHLVQRAKREVLCLDPSSH*VQGVGL
Trigger: CAGCCCCACTCCTTGTACCAAGTGTGAACTGGGGTC...AAGGCAGAGCACCTCTCGTTTGGCCCTCTGAACAAGGTGCACGCGAGCTGGGGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CAA 90 bp GGCTGCAGTCCTGGCAGGGTGTCCACACTCGCCACCTCGATGGTCCCCTCTTCTTGGACACAGCCAGACTaGGAGCAGTGCAACGAGATC +
Preference number: 5 (lower is better)
Translates to: GCSPGRVSTLATSMVPSSWTQPD*EQCNEI
Trigger: GATCTCGTTGCACTGCTCCAAGTCTGGCTGTGTCCA...AGAAGAGGGGACCATCGAGGTGGCGAGTGTGGACACCCTGCCAGGACTGCAGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CAA 90 bp TCCATTTTCAACATGGACCGCCTGGACACAGCCAGACTTGGAGCAGTGCAACGACCTGGGGGACCAGCCTaGCCCATCCGGGAGAAGCCA +
Preference number: 5 (lower is better)
Translates to: SIFNMDRLDTARLGAVQRPGGPA*PIREKP
Trigger: TGGCTTCTCCCGGATGGGCAAGGCTGGTCCCCCAGG...TCGTTGCACTGCTCCAAGTCTGGCTGTGTCCAGGCGGTCCATGTTGAAAATGGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CAA 90 bp GAGGGGCATCCTGCCTGTTTCCTGCAGAGGAGCTCTGATCGGGGAACAGGGCAGCCATCCAAACCAGGTTaGCCTAAGCCAGCTGGACCA +
Preference number: 5 (lower is better)
Translates to: EGHPACFLQRSSDRGTGQPSKPG*PKPAGP
Trigger: TGGTCCAGCTGGCTTAGGCAAACCTGGTTTGGATGG...CTGCCCTGTTCCCCGATCAGAGCTCCTCTGCAGGAAACAGGCAGGATGCCCCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CAA 90 bp ACTTCACAGAGGTTGATCTTTCTGGCCTGTAGGTGTCCCAGGGGCCTCTGTGCTAAACCCGGCTCACCCTaGGGCCCAGTTGGTCCAGGG +
Preference number: 5 (lower is better)
Translates to: TSQRLIFLACRCPRGLCAKPGSP*GPVGPG
Trigger: CCCTGGACCAACTGGGCCCAAGGGTGAGCCGGGTTT...AGCACAGAGGCCCCTGGGACACCTACAGGCCAGAAAGATCAACCTCTGTGAAGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CAA 90 bp CCAGCCCCTTCCAGAAACAATCTCAGCCTGCATGCAGGGAGAAAGCAAGTTAGTCCTGGGGGACCAGCCTaGCCCATCCGGGAGAAGCCA +
Preference number: 5 (lower is better)
Translates to: PAPSRNNLSLHAGRKQVSPGGPA*PIREKP
Trigger: TGGCTTCTCCCGGATGGGCAAGGCTGGTCCCCCAGG...ACTAACTTGCTTTCTCCCTGCATGCAGGCTGAGATTGTTTCTGGAAGGGGCTGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CAA 90 bp GTCCAGAGCCAACTCATTCCCAAGGGACCTGTTGGCACCCTTTCTCTCCCAGCCACTCCATTATCCCCCTaGAGGCCTCGATCACCTGGG +
Preference number: 5 (lower is better)
Translates to: VQSQLIPKGPVGTLSLPATPLSP*RPRSPG
Trigger: CCCAGGTGATCGAGGCCTCAAGGGGGATAATGGAGT...GGCTGGGAGAGAAAGGGTGCCAACAGGTCCCTTGGGAATGAGTTGGCTCTGGAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CAA 90 bp ACTTCACAGAGGTTGATCTTTCTGGCCTGTAGGTGTCCCAGGGGCCTCTGTGCTGCCGGCACGTTGTTCTaGTACAGGGCCACCCACACG +
Preference number: 5 (lower is better)
Translates to: TSQRLIFLACRCPRGLCAAGTLF*YRATHT
Trigger: CGTGTGGGTGGCCCTGTACAAGAACAACGTGCCGGC...AGCACAGAGGCCCCTGGGACACCTACAGGCCAGAAAGATCAACCTCTGTGAAGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CAA 90 bp AGTCAGAAGTCAGCAGCCATCCTCCATTTTCAACATGGACCGCCTGGACACAGCTGGCGGGGTGGGGAGTaGAGCTCCCTCTCAGCTCCT +
Preference number: 5 (lower is better)
Translates to: SQKSAAILHFQHGPPGHSWRGGE*SSLSAP
Trigger: AGGAGCTGAGAGGGAGCTCAACTCCCCACCCCGCCA...GCTGTGTCCAGGCGGTCCATGTTGAAAATGGAGGATGGCTGCTGACTTCTGACT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CAA 90 bp TTATCCACTCCGCTTGACGTAGGGACTGAGGGGTTGGGAGGGGCATCCTGCCTGTGGACACAGCCAGACTaGGAGCAGTGCAACGAGATC +
Preference number: 5 (lower is better)
Translates to: LSTPLDVGTEGLGGASCLWTQPD*EQCNEI
Trigger: GATCTCGTTGCACTGCTCCAAGTCTGGCTGTGTCCA...CAGGCAGGATGCCCCTCCCAACCCCTCAGTCCCTACGTCAAGCGGAGTGGATAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CAA 90 bp AGTCAGAAGTCAGCAGCCATCCTCCATTTTCAACATGGACCGCCTGGACACAGCTCCAGGTACTGGCCTTaGCCCTCACGGAAGGGCGGT +
Preference number: 5 (lower is better)
Translates to: SQKSAAILHFQHGPPGHSSRYWP*PSRKGG
Trigger: ACCGCCCTTCCGTGAGGGCAAAGGCCAGTACCTGGA...GCTGTGTCCAGGCGGTCCATGTTGAAAATGGAGGATGGCTGCTGACTTCTGACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CAA 90 bp AAACGTCCAGAGCCAACTCATTCCCAAGGGACCTGTTGGCACCCTTTCTCTCCCCAGCTCGCGTGCACCTaGTTCAGAGGGCCAAACGAG +
Preference number: 5 (lower is better)
Translates to: KRPEPTHSQGTCWHPFSPQLACT*FRGPNE
Trigger: CTCGTTTGGCCCTCTGAACAAGGTGCACGCGAGCTG...GGGAGAGAAAGGGTGCCAACAGGTCCCTTGGGAATGAGTTGGCTCTGGACGTTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CAA 90 bp GAGGGGCATCCTGCCTGTTTCCTGCAGAGGAGCTCTGATCGGGGAACAGGGCAGACAGATGAACCCCTCTaGTACACACATACACCCACC +
Preference number: 5 (lower is better)
Translates to: EGHPACFLQRSSDRGTGQTDEPL*YTHTPT
Trigger: GGTGGGTGTATGTGTGTACAAGAGGGGTTCATCTGT...CTGCCCTGTTCCCCGATCAGAGCTCCTCTGCAGGAAACAGGCAGGATGCCCCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CAA 90 bp TTATCCACTCCGCTTGACGTAGGGACTGAGGGGTTGGGAGGGGCATCCTGCCTGAACAGCCTGCTTTGTTaGGAGAAGTTGTGGGCAGGG +
Preference number: 5 (lower is better)
Translates to: LSTPLDVGTEGLGGASCLNSLLC*EKLWAG
Trigger: CCCTGCCCACAACTTCTCCAAACAAAGCAGGCTGTT...CAGGCAGGATGCCCCTCCCAACCCCTCAGTCCCTACGTCAAGCGGAGTGGATAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CAA 90 bp CCCCCAGCTCGCGTGCACCTTGTTCAGAGGGCCAAACGAGAGGTGCTCTGCCTTAGCAAACAGCCTGCTTaGTTTGGAGAAGTTGTGGGC +
Preference number: 5 (lower is better)
Translates to: PPARVHLVQRAKREVLCLSKQPA*FGEVVG
Trigger: GCCCACAACTTCTCCAAACAAAGCAGGCTGTTTGCT...AAGGCAGAGCACCTCTCGTTTGGCCCTCTGAACAAGGTGCACGCGAGCTGGGGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CAA 90 bp GAAGTGGGAGCCGTCTTCATCCCCCAGCTCGCGTGCACCTTGTTCAGAGGGCCAAGCAAACAGCCTGCTTaGTTTGGAGAAGTTGTGGGC +
Preference number: 5 (lower is better)
Translates to: EVGAVFIPQLACTLFRGPSKQPA*FGEVVG
Trigger: GCCCACAACTTCTCCAAACAAAGCAGGCTGTTTGCT...TGGCCCTCTGAACAAGGTGCACGCGAGCTGGGGGATGAAGACGGCTCCCACTTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CAA 90 bp CCACCATCTGCACTAGATACTTCTAGACACTTCACAGAGGTTGATCTTTCTGGCCCCTCCACACCGCCGTaGGGCAGGTGCAAGCCTGCG +
Preference number: 5 (lower is better)
Translates to: PPSALDTSRHFTEVDLSGPSTPP*GRCKPA
Trigger: CGCAGGCTTGCACCTGCCCAACGGCGGTGTGGAGGG...GCCAGAAAGATCAACCTCTGTGAAGTGTCTAGAAGTATCTAGTGCAGATGGTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CAA 90 bp CCAGCCCCTTCCAGAAACAATCTCAGCCTGCATGCAGGGAGAAAGCAAGTTAGTGAGAGGTGCTCTGCCTaGGGGATACCTGGCTGGGGT +
Preference number: 5 (lower is better)
Translates to: PAPSRNNLSLHAGRKQVSERCSA*GIPGWG
Trigger: ACCCCAGCCAGGTATCCCCAAGGCAGAGCACCTCTC...ACTAACTTGCTTTCTCCCTGCATGCAGGCTGAGATTGTTTCTGGAAGGGGCTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CAA 90 bp AAACGTCCAGAGCCAACTCATTCCCAAGGGACCTGTTGGCACCCTTTCTCTCCCTTCCCAAGGGACCTGTaGGCACCCTTTCTCTCCCAG +
Preference number: 5 (lower is better)
Translates to: KRPEPTHSQGTCWHPFSPFPRDL*APFLSQ
Trigger: CTGGGAGAGAAAGGGTGCCAACAGGTCCCTTGGGAA...GGGAGAGAAAGGGTGCCAACAGGTCCCTTGGGAATGAGTTGGCTCTGGACGTTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CAA 90 bp GAGGGGCATCCTGCCTGTTTCCTGCAGAGGAGCTCTGATCGGGGAACAGGGCAGCCCACCAGGTATGGTTaGAGAGTCCTTAGTTGGTTT +
Preference number: 5 (lower is better)
Translates to: EGHPACFLQRSSDRGTGQPTRYG*RVLSWF
Trigger: AAACCAACTAAGGACTCTCAAACCATACCTGGTGGG...CTGCCCTGTTCCCCGATCAGAGCTCCTCTGCAGGAAACAGGCAGGATGCCCCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CAA 90 bp CCCCCAGCTCGCGTGCACCTTGTTCAGAGGGCCAAACGAGAGGTGCTCTGCCTTCCCCTCCTGAAAGGTTaGAGGAATGAAATTTGGCAG +
Preference number: 5 (lower is better)
Translates to: PPARVHLVQRAKREVLCLPLLKG*RNEIWQ
Trigger: CTGCCAAATTTCATTCCTCAAACCTTTCAGGAGGGG...AAGGCAGAGCACCTCTCGTTTGGCCCTCTGAACAAGGTGCACGCGAGCTGGGGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS CCA 90 bp AAAGTAGTAGACGCCGCCCACAGGGCAGGTGAAGATGCCAGTGGCTaGGTTGTAGCCGCTGTGGCCATTGTAGAGAGTCCGGTCAAATTT +
Preference number: 5 (lower is better)
Translates to: KVVDAAHRAGEDASG*VVAAVAIVESPVKF
Trigger: AAATTTGACCGGACTCTCTACAATGGCCACAGCGGCTACAACCCAGCCACTGGCATCTTCACCTGCCCTGTGGGCGGCGTCTACTACTTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000303143.9
ENST00000397799.2
ENST00000481785.1
CDS-3UTR CAA 90 bp AGGTTCTTTGTAATTGAAAAGGTCGCTCTACCACTAAAGGGGAGGAGGCCAGGGCTCCAGGAGGTCCTTTaGGGCCCACAGCTCCTGGCT +
Preference number: 5 (lower is better)
Translates to: RFFVIEKVALPLKGRRPGLQEVL*GPQLLA
Trigger: AGCCAGGAGCTGTGGGCCCAAAAGGACCTCCTGGAG...CCCTGGCCTCCTCCCCTTTAGTGGTAGAGCGACCTTTTCAATTACAAAGAACCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CAA 90 bp ACCATATGGTTCTTATTAAGGAAAAGGAAGTGGGAGCCGTCTTCATCCCCCAGCAAACCCGGCTCACCCTaGGGCCCAGTTGGTCCAGGG +
Preference number: 5 (lower is better)
Translates to: TIWFLLRKRKWEPSSSPSKPGSP*GPVGPG
Trigger: CCCTGGACCAACTGGGCCCAAGGGTGAGCCGGGTTT...GCTGGGGGATGAAGACGGCTCCCACTTCCTTTTCCTTAATAAGAACCATATGGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CAA 90 bp ATCCTCCATTTTCAACATGGACCGCCTGGACACAGCCAGACTTGGAGCAGTGCAGACCCCAGTTCACACTaGGTACAAGGAGTGGGGCTG +
Preference number: 5 (lower is better)
Translates to: ILHFQHGPPGHSQTWSSADPSSH*VQGVGL
Trigger: CAGCCCCACTCCTTGTACCAAGTGTGAACTGGGGTC...TGCACTGCTCCAAGTCTGGCTGTGTCCAGGCGGTCCATGTTGAAAATGGAGGAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CAA 90 bp ATACTTCTAGACACTTCACAGAGGTTGATCTTTCTGGCCTGTAGGTGTCCCAGGAGGGCCACCCACACGTaGGTGCCCTTGACGTGCACA +
Preference number: 5 (lower is better)
Translates to: ILLDTSQRLIFLACRCPRRATHT*VPLTCT
Trigger: TGTGCACGTCAAGGGCACCAACGTGTGGGTGGCCCT...CCTGGGACACCTACAGGCCAGAAAGATCAACCTCTGTGAAGTGTCTAGAAGTAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CAA 90 bp CCAGCCCCTTCCAGAAACAATCTCAGCCTGCATGCAGGGAGAAAGCAAGTTAGTGCAGTGAAAGGGAGGTaGCCCTTTCCCAGGGCAACA +
Preference number: 5 (lower is better)
Translates to: PAPSRNNLSLHAGRKQVSAVKGR*PFPRAT
Trigger: TGTTGCCCTGGGAAAGGGCAACCTCCCTTTCACTGC...ACTAACTTGCTTTCTCCCTGCATGCAGGCTGAGATTGTTTCTGGAAGGGGCTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CAA 90 bp TTATCCACTCCGCTTGACGTAGGGACTGAGGGGTTGGGAGGGGCATCCTGCCTGGTCACTTGGGCAGATTaGGGTTATCATTCCTCCTTT +
Preference number: 5 (lower is better)
Translates to: LSTPLDVGTEGLGGASCLVTWAD*GYHSSF
Trigger: AAAGGAGGAATGATAACCCAAATCTGCCCAAGTGAC...CAGGCAGGATGCCCCTCCCAACCCCTCAGTCCCTACGTCAAGCGGAGTGGATAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CAA 90 bp TTATCCACTCCGCTTGACGTAGGGACTGAGGGGTTGGGAGGGGCATCCTGCCTGCTTCTCAAGTGTCACTaGGGCAGATTTGGGTTATCA +
Preference number: 5 (lower is better)
Translates to: LSTPLDVGTEGLGGASCLLLKCH*GRFGLS
Trigger: TGATAACCCAAATCTGCCCAAGTGACACTTGAGAAG...CAGGCAGGATGCCCCTCCCAACCCCTCAGTCCCTACGTCAAGCGGAGTGGATAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CAA 90 bp GTCCAGAGCCAACTCATTCCCAAGGGACCTGTTGGCACCCTTTCTCTCCCAGCCCCCACCAGGTATGGTTaGAGAGTCCTTAGTTGGTTT +
Preference number: 5 (lower is better)
Translates to: VQSQLIPKGPVGTLSLPAPTRYG*RVLSWF
Trigger: AAACCAACTAAGGACTCTCAAACCATACCTGGTGGG...GGCTGGGAGAGAAAGGGTGCCAACAGGTCCCTTGGGAATGAGTTGGCTCTGGAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CAA 90 bp ATCCTCCATTTTCAACATGGACCGCCTGGACACAGCCAGACTTGGAGCAGTGCACTAGGGAAGAAGAGGTaGAGCGAAGAACCCCCACCA +
Preference number: 5 (lower is better)
Translates to: ILHFQHGPPGHSQTWSSALGKKR*SEEPPP
Trigger: TGGTGGGGGTTCTTCGCTCAACCTCTTCTTCCCTAG...TGCACTGCTCCAAGTCTGGCTGTGTCCAGGCGGTCCATGTTGAAAATGGAGGAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CAA 90 bp CCAGCCCCTTCCAGAAACAATCTCAGCCTGCATGCAGGGAGAAAGCAAGTTAGTCTTTGTTTGGAGAAGTaGTGGGCAGGGGAGGAGGGT +
Preference number: 5 (lower is better)
Translates to: PAPSRNNLSLHAGRKQVSLCLEK*WAGEEG
Trigger: ACCCTCCTCCCCTGCCCACAACTTCTCCAAACAAAG...ACTAACTTGCTTTCTCCCTGCATGCAGGCTGAGATTGTTTCTGGAAGGGGCTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CAA 90 bp ATCCTCCATTTTCAACATGGACCGCCTGGACACAGCCAGACTTGGAGCAGTGCAAACAGCCTGCTTTGTTaGGAGAAGTTGTGGGCAGGG +
Preference number: 5 (lower is better)
Translates to: ILHFQHGPPGHSQTWSSANSLLC*EKLWAG
Trigger: CCCTGCCCACAACTTCTCCAAACAAAGCAGGCTGTT...TGCACTGCTCCAAGTCTGGCTGTGTCCAGGCGGTCCATGTTGAAAATGGAGGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CAA 90 bp GTCCAGAGCCAACTCATTCCCAAGGGACCTGTTGGCACCCTTTCTCTCCCAGCCGTCACTTGGGCAGATTaGGGTTATCATTCCTCCTTT +
Preference number: 5 (lower is better)
Translates to: VQSQLIPKGPVGTLSLPAVTWAD*GYHSSF
Trigger: AAAGGAGGAATGATAACCCAAATCTGCCCAAGTGAC...GGCTGGGAGAGAAAGGGTGCCAACAGGTCCCTTGGGAATGAGTTGGCTCTGGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CAA 90 bp ATGGTTCTTATTAAGGAAAAGGAAGTGGGAGCCGTCTTCATCCCCCAGCTCGCGGGAAAGTGGCCATCTTaGCACGAGCAGGAATGTCCA +
Preference number: 5 (lower is better)
Translates to: MVLIKEKEVGAVFIPQLAGKWPS*HEQECP
Trigger: TGGACATTCCTGCTCGTGCAAAGATGGCCACTTTCC...CGCGAGCTGGGGGATGAAGACGGCTCCCACTTCCTTTTCCTTAATAAGAACCAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CAA 90 bp ATACTTCTAGACACTTCACAGAGGTTGATCTTTCTGGCCTGTAGGTGTCCCAGGCTAGGGAAGAAGAGGTaGAGCGAAGAACCCCCACCA +
Preference number: 5 (lower is better)
Translates to: ILLDTSQRLIFLACRCPRLGKKR*SEEPPP
Trigger: TGGTGGGGGTTCTTCGCTCAACCTCTTCTTCCCTAG...CCTGGGACACCTACAGGCCAGAAAGATCAACCTCTGTGAAGTGTCTAGAAGTAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CAA 90 bp CCACCATCTGCACTAGATACTTCTAGACACTTCACAGAGGTTGATCTTTCTGGCCCATCCAAACCAGGTTaGCCTAAGCCAGCTGGACCA +
Preference number: 5 (lower is better)
Translates to: PPSALDTSRHFTEVDLSGPSKPG*PKPAGP
Trigger: TGGTCCAGCTGGCTTAGGCAAACCTGGTTTGGATGG...GCCAGAAAGATCAACCTCTGTGAAGTGTCTAGAAGTATCTAGTGCAGATGGTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CAA 90 bp GAAGTCAGCAGCCATCCTCCATTTTCAACATGGACCGCCTGGACACAGCCAGACTCTTACAATTTTGTATaGAGAAAACCAGCCCAGCCC +
Preference number: 5 (lower is better)
Translates to: EVSSHPPFSTWTAWTQPDSYNFV*RKPAQP
Trigger: GGGCTGGGCTGGTTTTCTCAATACAAAATTGTAAGA...GTCTGGCTGTGTCCAGGCGGTCCATGTTGAAAATGGAGGATGGCTGCTGACTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CAA 90 bp CCACCATCTGCACTAGATACTTCTAGACACTTCACAGAGGTTGATCTTTCTGGCCTTTGTTTGGAGAAGTaGTGGGCAGGGGAGGAGGGT +
Preference number: 5 (lower is better)
Translates to: PPSALDTSRHFTEVDLSGLCLEK*WAGEEG
Trigger: ACCCTCCTCCCCTGCCCACAACTTCTCCAAACAAAG...GCCAGAAAGATCAACCTCTGTGAAGTGTCTAGAAGTATCTAGTGCAGATGGTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CAA 90 bp ACCATATGGTTCTTATTAAGGAAAAGGAAGTGGGAGCCGTCTTCATCCCCCAGCGAAGAGTGCTCATGTTaGCTGATGGTCGATTCTGCC +
Preference number: 5 (lower is better)
Translates to: TIWFLLRKRKWEPSSSPSEECSC*LMVDSA
Trigger: GGCAGAATCGACCATCAGCAAACATGAGCACTCTTC...GCTGGGGGATGAAGACGGCTCCCACTTCCTTTTCCTTAATAAGAACCATATGGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CAA 90 bp ACCATATGGTTCTTATTAAGGAAAAGGAAGTGGGAGCCGTCTTCATCCCCCAGCACAGATGAACCCCTCTaGTACACACATACACCCACC +
Preference number: 5 (lower is better)
Translates to: TIWFLLRKRKWEPSSSPSTDEPL*YTHTPT
Trigger: GGTGGGTGTATGTGTGTACAAGAGGGGTTCATCTGT...GCTGGGGGATGAAGACGGCTCCCACTTCCTTTTCCTTAATAAGAACCATATGGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CAA 90 bp CCACCATCTGCACTAGATACTTCTAGACACTTCACAGAGGTTGATCTTTCTGGCGGAAAGTGGCCATCTTaGCACGAGCAGGAATGTCCA +
Preference number: 5 (lower is better)
Translates to: PPSALDTSRHFTEVDLSGGKWPS*HEQECP
Trigger: TGGACATTCCTGCTCGTGCAAAGATGGCCACTTTCC...GCCAGAAAGATCAACCTCTGTGAAGTGTCTAGAAGTATCTAGTGCAGATGGTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CAA 90 bp ATGGTTCTTATTAAGGAAAAGGAAGTGGGAGCCGTCTTCATCCCCCAGCTCGCGCTTCTCAAGTGTCACTaGGGCAGATTTGGGTTATCA +
Preference number: 5 (lower is better)
Translates to: MVLIKEKEVGAVFIPQLALLKCH*GRFGLS
Trigger: TGATAACCCAAATCTGCCCAAGTGACACTTGAGAAG...CGCGAGCTGGGGGATGAAGACGGCTCCCACTTCCTTTTCCTTAATAAGAACCAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CAA 90 bp CCACCATCTGCACTAGATACTTCTAGACACTTCACAGAGGTTGATCTTTCTGGCACACTGCACAGACATTaGGGGGAAAGAAACTCAGGC +
Preference number: 5 (lower is better)
Translates to: PPSALDTSRHFTEVDLSGTLHRH*GERNSG
Trigger: GCCTGAGTTTCTTTCCCCCAAATGTCTGTGCAGTGT...GCCAGAAAGATCAACCTCTGTGAAGTGTCTAGAAGTATCTAGTGCAGATGGTGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CAA 90 bp ATACTTCTAGACACTTCACAGAGGTTGATCTTTCTGGCCTGTAGGTGTCCCAGGCCCCTCCTGAAAGGTTaGAGGAATGAAATTTGGCAG +
Preference number: 5 (lower is better)
Translates to: ILLDTSQRLIFLACRCPRPLLKG*RNEIWQ
Trigger: CTGCCAAATTTCATTCCTCAAACCTTTCAGGAGGGG...CCTGGGACACCTACAGGCCAGAAAGATCAACCTCTGTGAAGTGTCTAGAAGTAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CAA 90 bp TGTAGAGAGCTAAGCTTCCTATACCAAGTTAGAAGTGAAATGACTAGTGGAAAACAGCTCGCGTGCACCTaGTTCAGAGGGCCAAACGAG +
Preference number: 5 (lower is better)
Translates to: CRELSFLYQVRSEMTSGKQLACT*FRGPNE
Trigger: CTCGTTTGGCCCTCTGAACAAGGTGCACGCGAGCTG...TTTTCCACTAGTCATTTCACTTCTAACTTGGTATAGGAAGCTTAGCTCTCTACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CAA 90 bp TGTAGAGAGCTAAGCTTCCTATACCAAGTTAGAAGTGAAATGACTAGTGGAAAAGCAGTGAAAGGGAGGTaGCCCTTTCCCAGGGCAACA +
Preference number: 5 (lower is better)
Translates to: CRELSFLYQVRSEMTSGKAVKGR*PFPRAT
Trigger: TGTTGCCCTGGGAAAGGGCAACCTCCCTTTCACTGC...TTTTCCACTAGTCATTTCACTTCTAACTTGGTATAGGAAGCTTAGCTCTCTACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CAA 90 bp AATTTCTGCCAATCAGAACCCATCCCTAACACATCAGATGATAGTGGCTTTGACGAAGAGTGCTCATGTTaGCTGATGGTCGATTCTGCC +
Preference number: 5 (lower is better)
Translates to: NFCQSEPIPNTSDDSGFDEECSC*LMVDSA
Trigger: GGCAGAATCGACCATCAGCAAACATGAGCACTCTTC...GTCAAAGCCACTATCATCTGATGTGTTAGGGATGGGTTCTGATTGGCAGAAATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS-3UTR CAA 90 bp TGTAGAGAGCTAAGCTTCCTATACCAAGTTAGAAGTGAAATGACTAGTGGAAAAACACTGCACAGACATTaGGGGGAAAGAAACTCAGGC +
Preference number: 5 (lower is better)
Translates to: CRELSFLYQVRSEMTSGKTLHRH*GERNSG
Trigger: GCCTGAGTTTCTTTCCCCCAAATGTCTGTGCAGTGT...TTTTCCACTAGTCATTTCACTTCTAACTTGGTATAGGAAGCTTAGCTCTCTACA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS CAA 72 bp CCAGGCAGCCCGGGCTGGCCCACTCCATTATCCCCCTaGAGGCCTCGATCACCTGGGGGCCCAGGCTCCCCC +
Preference number: 6 (lower is better)
Translates to: PGSPGWPTPLSP*RPRSPGGPGSP
Trigger: GGGGGAGCCTGGGCCCCCAGGTGATCGAGGCCTCAAGGGGGATAATGGAGTGGGCCAGCCCGGGCTGCCTGG
72% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENST00000303143.9
ENST00000397799.2
ENST00000481785.1
CDS CCA 72 bp CCGTTGGCCTGGTCCGACGGCATCTGCACCCAGACCTaGTCGTTGGGCCGCAGCTGGAGCACGGCCCCACCA +
Preference number: 6 (lower is better)
Translates to: PLAWSDGICTQT*SLGRSWSTAPP
Trigger: TGGTGGGGCCGTGCTCCAGCTGCGGCCCAACGACCAGGTCTGGGTGCAGATGCCGTCGGACCAGGCCAACGG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000303143.9
ENST00000397799.2
ENST00000481785.1
CDS CAA 72 bp GGTCCTCCAGGGCGACCCGTGAAACCCGGCTCACCCTaGGGCCCAGTTGGTCCAGGGGGTCCATGGGCCCCA +
Preference number: 6 (lower is better)
Translates to: GPPGRPVKPGSP*GPVGPGGPWAP
Trigger: TGGGGCCCATGGACCCCCTGGACCAACTGGGCCCAAGGGTGAGCCGGGTTTCACGGGTCGCCCTGGAGGACC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000303143.9
ENST00000397799.2
ENST00000481785.1
CDS CAA 72 bp GCCTGGTCCGACGGCATCTGCACCCAGACCTGGTCGTaGGGCCGCAGCTGGAGCACGGCCCCACCAGATGCC +
Preference number: 6 (lower is better)
Translates to: AWSDGICTQTWS*GRSWSTAPPDA
Trigger: GGCATCTGGTGGGGCCGTGCTCCAGCTGCGGCCCAACGACCAGGTCTGGGTGCAGATGCCGTCGGACCAGGC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000303143.9
ENST00000397799.2
ENST00000481785.1
CDS GCA 72 bp CCTCCACACCGCCGTTGGGCAGGTGCAAGCCTGCGATaGCAGTCTCATCGAAGGCCCCAGGGGCACCAGGGG +
Preference number: 6 (lower is better)
Translates to: PPHRRWAGASLR*QSHRRPQGHQG
Trigger: CCCCTGGTGCCCCTGGGGCCTTCGATGAGACTGGCATCGCAGGCTTGCACCTGCCCAACGGCGGTGTGGAGG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000303143.9
ENST00000397799.2
ENST00000481785.1
CDS GCA 72 bp GGCACCCTCCACACCGCCGTTGGGCAGGTGCAAGCCTaGGATGCCAGTCTCATCGAAGGCCCCAGGGGCACC +
Preference number: 6 (lower is better)
Translates to: GTLHTAVGQVQA*DASLIEGPRGT
Trigger: GGTGCCCCTGGGGCCTTCGATGAGACTGGCATCGCAGGCTTGCACCTGCCCAACGGCGGTGTGGAGGGTGCC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000303143.9
ENST00000397799.2
ENST00000481785.1
CDS GCA 72 bp CCCAGCACGGCACCCTCCACACCGCCGTTGGGCAGGTaGAAGCCTGCGATGCCAGTCTCATCGAAGGCCCCA +
Preference number: 6 (lower is better)
Translates to: PSTAPSTPPLGR*KPAMPVSSKAP
Trigger: TGGGGCCTTCGATGAGACTGGCATCGCAGGCTTGCACCTGCCCAACGGCGGTGTGGAGGGTGCCGTGCTGGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000303143.9
ENST00000397799.2
ENST00000481785.1
CDS CCA 72 bp CACAGGTCCTTTCTGCATGGGCTGGATGTACTTCACTaGGGCATAGCCCGCCGCCCCACCGGCCCCGCCACC +
Preference number: 6 (lower is better)
Translates to: HRSFLHGLDVLH*GIARRPTGPAT
Trigger: GGTGGCGGGGCCGGTGGGGCGGCGGGCTATGCCCCAGTGAAGTACATCCAGCCCATGCAGAAAGGACCTGTG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS CCA 72 bp CCTCACGGAAGGGCGGTCCCACAGGTCCTTTCTGCATaGGCTGGATGTACTTCACTGGGGCATAGCCCGCCG +
Preference number: 6 (lower is better)
Translates to: PHGRAVPQVLSA*AGCTSLGHSPP
Trigger: CGGCGGGCTATGCCCCAGTGAAGTACATCCAGCCCATGCAGAAAGGACCTGTGGGACCGCCCTTCCGTGAGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2
CDS GCA 72 bp GTCGTTGGGCCGCAGCTGGAGCACGGCCCCACCAGATaGCTGGTCCAGGTAGCCCTTCTTGTACTCATCGTA +
Preference number: 6 (lower is better)
Translates to: VVGPQLEHGPTR*LVQVALLVLIV
Trigger: TACGATGAGTACAAGAAGGGCTACCTGGACCAGGCATCTGGTGGGGCCGTGCTCCAGCTGCGGCCCAACGAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000303143.9
ENST00000397799.2
ENST00000481785.1
CDS GCA 72 bp GCAGCAGCGGTAGAGGCATTTCCAGGTACTGGCCTTTaGCCTCACGGAAGGGCGGTCCCACAGGTCCTTTCT +
Preference number: 6 (lower is better)
Translates to: AAAVEAFPGTGL*PHGRAVPQVLS
Trigger: AGAAAGGACCTGTGGGACCGCCCTTCCGTGAGGGCAAAGGCCAGTACCTGGAAATGCCTCTACCGCTGCTGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000303143.9
ENST00000397799.2