RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for COL1A2 (Homo sapiens)

Ensembl gene IDs: ENSG00000164692

Ensembl transcript IDs: ENST00000297268.11, ENST00000461525.5, ENST00000464916.1, ENST00000467931.1, ENST00000469732.1, ENST00000473573.5, ENST00000478215.1, ENST00000481570.5, ENST00000488298.5, ENST00000497316.5, ENST00000620463.1

Found 336 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR CCA 90 bp TCTCTGTCTAGGTCAGCACCTAACAATGTGGATCACACTCATGGGAAAGTGTTTTTCAAAAGCCACAAGTaGTGCAAATGTTTATGGTTT +
Preference number: 2 (lower is better)
Translates to: SLSRSAPNNVDHTHGKVFFKSHK*CKCLWF
Trigger: AAACCATAAACATTTGCACCACTTGTGGCTTTTGAA...AAACACTTTCCCATGAGTGTGATCCACATTGTTAGGTGCTGACCTAGACAGAGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000297268.11
3UTR-3UTR GCA 90 bp GTTTGGGTTTTAAACTTCCCTCTGTGGAAGATATTCAAAAGCCACAAGTGGTGCAACTGTATTGCACAATaGTCTGATCAATCCTTCTTT +
Preference number: 2 (lower is better)
Translates to: VWVLNFPLWKIFKSHKWCNCIAQ*SDQSFF
Trigger: AAAGAAGGATTGATCAGAGCATTGTGCAATACAGTT...GCACCACTTGTGGCTTTTGAATATCTTCCACAGAGGGAAGTTTAAAACCCAAAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000297268.11
3UTR CCA 72 bp TCAGTTCATCTCTGTCTAGGTCAGCACCTAACAATGTaGATCACACTCATGGGAAAGTGTTTTGAGGTAGTT +
Preference number: 3 (lower is better)
Translates to: SVHLCLGQHLTM*ITLMGKCFEVV
Trigger: AACTACCTCAAAACACTTTCCCATGAGTGTGATCCACATTGTTAGGTGCTGACCTAGACAGAGATGAACTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000297268.11
CDS-3UTR CCA 90 bp GGGGGAGCGGGGGAAGGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATGGACCAGGAGGACCTTaGGGCCCAGCAGAGCCGGGC +
Preference number: 4 (lower is better)
Translates to: GGAGEGVNETVLHNALINGPGGP*GPAEPG
Trigger: GCCCGGCTCTGCTGGGCCCCAAGGTCCTCCTGGTCC...ATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCCTTCCCCCGCTCCCCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR GCA 90 bp GGGGGAGCGGGGGAAGGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATTGGCGGGCGCGGGCATaGAGTCGTGGCCAGTACCTC +
Preference number: 4 (lower is better)
Translates to: GGAGEGVNETVLHNALINWRARA*SRGQYL
Trigger: GAGGTACTGGCCACGACTGCATGCCCGCGCCCGCCA...ATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCCTTCCCCCGCTCCCCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR CCA 90 bp GGGGGAGCGGGGGAAGGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATGGCGGAGGTATCACCTaGCGGGCGCGGGCATGCAGT +
Preference number: 4 (lower is better)
Translates to: GGAGEGVNETVLHNALINGGGIT*RARACS
Trigger: ACTGCATGCCCGCGCCCGCCAGGTGATACCTCCGCC...ATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCCTTCCCCCGCTCCCCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR TCA 90 bp GGGGGAGCGGGGGAAGGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATGGTCCTTGGAAACCTTaGGGGCCTGGGGCTCCAGCT +
Preference number: 4 (lower is better)
Translates to: GGAGEGVNETVLHNALINGPWKP*GPGAPA
Trigger: AGCTGGAGCCCCAGGCCCTCAAGGTTTCCAAGGACC...ATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCCTTCCCCCGCTCCCCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR TCA 90 bp TCTCTGTCTAGGTCAGCACCTAACAATGTGGATCACACTCATGGGAAAGTGTTTTTCACCAGCGGGACCTaGGGGGCCAGGCAGACCCTG +
Preference number: 4 (lower is better)
Translates to: SLSRSAPNNVDHTHGKVFFTSGT*GARQTL
Trigger: CAGGGTCTGCCTGGCCCCTCAGGTCCCGCTGGTGAA...AAACACTTTCCCATGAGTGTGATCCACATTGTTAGGTGCTGACCTAGACAGAGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000297268.11
CDS-3UTR GCA 90 bp TCTCTGTCTAGGTCAGCACCTAACAATGTGGATCACACTCATGGGAAAGTGTTTCAGGCCTGCCGTCGATaGCAGGGAGGCCGACAGGAC +
Preference number: 4 (lower is better)
Translates to: SLSRSAPNNVDHTHGKVFQACRR*QGGRQD
Trigger: GTCCTGTCGGCCTCCCTGGCATCGACGGCAGGCCTG...AAACACTTTCCCATGAGTGTGATCCACATTGTTAGGTGCTGACCTAGACAGAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000297268.11
CDS-3UTR GCA 90 bp CATCTCTGTCTAGGTCAGCACCTAACAATGTGGATCACACTCATGGGAAAGTGTCAATTGGGCCAGGCCTaGCGTCGATGCCAGGGAGGC +
Preference number: 4 (lower is better)
Translates to: HLCLGQHLTMWITLMGKCQLGQA*RRCQGG
Trigger: GCCTCCCTGGCATCGACGGCAGGCCTGGCCCAATTG...ACACTTTCCCATGAGTGTGATCCACATTGTTAGGTGCTGACCTAGACAGAGATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000297268.11
CDS-3UTR CCA 90 bp TCTCTGTCTAGGTCAGCACCTAACAATGTGGATCACACTCATGGGAAAGTGTTTGGCGGAGGTATCACCTaGCGGGCGCGGGCATGCAGT +
Preference number: 4 (lower is better)
Translates to: SLSRSAPNNVDHTHGKVFGGGIT*RARACS
Trigger: ACTGCATGCCCGCGCCCGCCAGGTGATACCTCCGCC...AAACACTTTCCCATGAGTGTGATCCACATTGTTAGGTGCTGACCTAGACAGAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000297268.11
CDS-3UTR CCA 90 bp GTTTGGGTTTTAAACTTCCCTCTGTGGAAGATATTCAAAAGCCACAAGTGGTGCGCCACGGGCACCAGCTaGGCCAGGGGCACCAACACG +
Preference number: 4 (lower is better)
Translates to: VWVLNFPLWKIFKSHKWCATGTS*ARGTNT
Trigger: CGTGTTGGTGCCCCTGGCCCAGCTGGTGCCCGTGGC...GCACCACTTGTGGCTTTTGAATATCTTCCACAGAGGGAAGTTTAAAACCCAAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000297268.11
CDS-3UTR CCA 90 bp GGGGGAGCGGGGGAAGGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATACCGCGTTCCCCTCTTaGACCAGCAGGACCAGGGAG +
Preference number: 4 (lower is better)
Translates to: GGAGEGVNETVLHNALINTAFPS*TSRTRE
Trigger: CTCCCTGGTCCTGCTGGTCCAAGAGGGGAACGCGGT...ATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCCTTCCCCCGCTCCCCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR CCA 90 bp GGGGGAGCGGGGGAAGGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATACCACCGCTTACACCTaGAGGTCCAGGAGGGCCAGG +
Preference number: 4 (lower is better)
Translates to: GGAGEGVNETVLHNALINTTAYT*RSRRAR
Trigger: CCTGGCCCTCCTGGACCTCCAGGTGTAAGCGGTGGT...ATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCCTTCCCCCGCTCCCCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR TCA 90 bp CATCTCTGTCTAGGTCAGCACCTAACAATGTGGATCACACTCATGGGAAAGTGTTACCAGGAGGGCCCATaGCGCCAGCTCTGCCATCAG +
Preference number: 4 (lower is better)
Translates to: HLCLGQHLTMWITLMGKCYQEGP*RQLCHQ
Trigger: CTGATGGCAGAGCTGGCGTCATGGGCCCTCCTGGTA...ACACTTTCCCATGAGTGTGATCCACATTGTTAGGTGCTGACCTAGACAGAGATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000297268.11
CDS-3UTR TCA 90 bp GGGGGAGCGGGGGAAGGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATGCACCAAGAAGACCCTaGGGACCTGGAGTGCCAGGA +
Preference number: 4 (lower is better)
Translates to: GGAGEGVNETVLHNALINAPRRP*GPGVPG
Trigger: TCCTGGCACTCCAGGTCCTCAGGGTCTTCTTGGTGC...ATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCCTTCCCCCGCTCCCCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR TCA 90 bp GTTTGGGTTTTAAACTTCCCTCTGTGGAAGATATTCAAAAGCCACAAGTGGTGCGGACCCACGGGGCCATaGGGACCAGGTGCACCTGCA +
Preference number: 4 (lower is better)
Translates to: VWVLNFPLWKIFKSHKWCGPTGP*GPGAPA
Trigger: TGCAGGTGCACCTGGTCCTCATGGCCCCGTGGGTCC...GCACCACTTGTGGCTTTTGAATATCTTCCACAGAGGGAAGTTTAAAACCCAAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000297268.11
CDS-3UTR TCA 90 bp GGGGGAGCGGGGGAAGGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATTCTGAGAGAAGGTGCTaGGCGAGGCTGGTCAGCCCT +
Preference number: 4 (lower is better)
Translates to: GGAGEGVNETVLHNALINSERRC*ARLVSP
Trigger: AGGGCTGACCAGCCTCGCTCAGCACCTTCTCTCAGA...ATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCCTTCCCCCGCTCCCCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR GCA 90 bp GGGGGAGCGGGGGAAGGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATCATCTTCACCAGCCTTaGCAGGAGGGCCAGCTGGAC +
Preference number: 4 (lower is better)
Translates to: GGAGEGVNETVLHNALINHLHQP*QEGQLD
Trigger: GTCCAGCTGGCCCTCCTGGCAAGGCTGGTGAAGATG...ATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCCTTCCCCCGCTCCCCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR GCA 90 bp GGGGGAGCGGGGGAAGGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATCAGGAGGGCCGGCAATaGCAAGAGGACCAGGTTCAC +
Preference number: 4 (lower is better)
Translates to: GGAGEGVNETVLHNALINQEGRQ*QEDQVH
Trigger: GTGAACCTGGTCCTCTTGGCATTGCCGGCCCTCCTG...ATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCCTTCCCCCGCTCCCCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR CCA 90 bp GGGGGAGCGGGGGAAGGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATTCCTCTTGCTCCAGCTaGGCCAATTGGGCCAGGCCT +
Preference number: 4 (lower is better)
Translates to: GGAGEGVNETVLHNALINSSCSS*ANWARP
Trigger: AGGCCTGGCCCAATTGGCCCAGCTGGAGCAAGAGGA...ATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCCTTCCCCCGCTCCCCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR CCA 90 bp GGGGGAGCGGGGGAAGGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATGTTTCCATCAGGACCTaGAGCACCCCGAGCACCAGC +
Preference number: 4 (lower is better)
Translates to: GGAGEGVNETVLHNALINVSIRT*STPSTS
Trigger: GCTGGTGCTCGGGGTGCTCCAGGTCCTGATGGAAAC...ATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCCTTCCCCCGCTCCCCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR CCA 90 bp GGGGGAGCGGGGGAAGGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATACCATTTGGACCAGCTaGGCCAGCAGCTCCAACGGG +
Preference number: 4 (lower is better)
Translates to: GGAGEGVNETVLHNALINTIWTS*ASSSNG
Trigger: CCCGTTGGAGCTGCTGGCCCAGCTGGTCCAAATGGT...ATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCCTTCCCCCGCTCCCCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR CCA 90 bp GGGGGAGCGGGGGAAGGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATCGGCCAACTGGACCTTaGTCACCACGAGGACCACGA +
Preference number: 4 (lower is better)
Translates to: GGAGEGVNETVLHNALINRPTGP*SPRGPR
Trigger: TCGTGGTCCTCGTGGTGACCAAGGTCCAGTTGGCCG...ATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCCTTCCCCCGCTCCCCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR CCA 90 bp GGGGGAGCGGGGGAAGGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATTTGACCATCGCGACCTaGGGGACCATCGTTCCCAGG +
Preference number: 4 (lower is better)
Translates to: GGAGEGVNETVLHNALINLTIAT*GTIVPR
Trigger: CCTGGGAACGATGGTCCCCCAGGTCGCGATGGTCAA...ATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCCTTCCCCCGCTCCCCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR TCA 90 bp GGGGGAGCGGGGGAAGGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATCCTGCAGGACCAGTTTaGCCAGGTTCACCAGGCTCA +
Preference number: 4 (lower is better)
Translates to: GGAGEGVNETVLHNALINPAGPV*PGSPGS
Trigger: TGAGCCTGGTGAACCTGGTCAAACTGGTCCTGCAGG...ATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCCTTCCCCCGCTCCCCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR TCA 90 bp GGGGGAGCGGGGGAAGGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATCCGGGTTTTCCAGGGTaGCCATCTTCACCAGCCTTG +
Preference number: 4 (lower is better)
Translates to: GGAGEGVNETVLHNALINPGFPG*PSSPAL
Trigger: CAAGGCTGGTGAAGATGGTCACCCTGGAAAACCCGG...ATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCCTTCCCCCGCTCCCCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR TCA 90 bp CATCTCTGTCTAGGTCAGCACCTAACAATGTGGATCACACTCATGGGAAAGTGTCACCAGGAGCACCGTTaGCTCCAGGACTACCCACAG +
Preference number: 4 (lower is better)
Translates to: HLCLGQHLTMWITLMGKCHQEHR*LQDYPQ
Trigger: CTGTGGGTAGTCCTGGAGTCAACGGTGCTCCTGGTG...ACACTTTCCCATGAGTGTGATCCACATTGTTAGGTGCTGACCTAGACAGAGATG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000297268.11
CDS-3UTR TCA 90 bp GGGGGAGCGGGGGAAGGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATTCCACTCTGGGTGGCTaGGTCTCAAGTCACGGCATG +
Preference number: 4 (lower is better)
Translates to: GGAGEGVNETVLHNALINSTLGG*VSSHGM
Trigger: CATGCCGTGACTTGAGACTCAGCCACCCAGAGTGGA...ATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCCTTCCCCCGCTCCCCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR GCA 90 bp CATCTCTGTCTAGGTCAGCACCTAACAATGTGGATCACACTCATGGGAAAGTGTTCCAGCAGGGCCACTTaGACCACGACTACCAGGAGG +
Preference number: 4 (lower is better)
Translates to: HLCLGQHLTMWITLMGKCSSRAT*TTTTRR
Trigger: CCTCCTGGTAGTCGTGGTGCAAGTGGCCCTGCTGGA...ACACTTTCCCATGAGTGTGATCCACATTGTTAGGTGCTGACCTAGACAGAGATG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000297268.11
CDS-3UTR GCA 90 bp GGGGGAGCGGGGGAAGGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATCCTGAGGGCCTCGAATaGCAGCAGGTCCAACTGTAC +
Preference number: 4 (lower is better)
Translates to: GGAGEGVNETVLHNALINPEGLE*QQVQLY
Trigger: GTACAGTTGGACCTGCTGGCATTCGAGGCCCTCAGG...ATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCCTTCCCCCGCTCCCCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR CCA 90 bp GGGGGAGCGGGGGAAGGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATACCCCTTTCTCCACGTaGTCCTCTATCTCCGGCTGG +
Preference number: 4 (lower is better)
Translates to: GGAGEGVNETVLHNALINTPFST*SSISGW
Trigger: CCAGCCGGAGATAGAGGACCACGTGGAGAAAGGGGT...ATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCCTTCCCCCGCTCCCCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR CCA 90 bp TCTCTGTCTAGGTCAGCACCTAACAATGTGGATCACACTCATGGGAAAGTGTTTGAAACCTTGAGGGCCTaGGGCTCCAGCTGCACCAGG +
Preference number: 4 (lower is better)
Translates to: SLSRSAPNNVDHTHGKVFETLRA*GSSCTR
Trigger: CCTGGTGCAGCTGGAGCCCCAGGCCCTCAAGGTTTC...AAACACTTTCCCATGAGTGTGATCCACATTGTTAGGTGCTGACCTAGACAGAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000297268.11
CDS-3UTR CCA 90 bp GTTTGGGTTTTAAACTTCCCTCTGTGGAAGATATTCAAAAGCCACAAGTGGTGCGGGGCCGGAGAGGCCTaGAAGACCCACTTCACCACG +
Preference number: 4 (lower is better)
Translates to: VWVLNFPLWKIFKSHKWCGAGEA*KTHFTT
Trigger: CGTGGTGAAGTGGGTCTTCCAGGCCTCTCCGGCCCC...GCACCACTTGTGGCTTTTGAATATCTTCCACAGAGGGAAGTTTAAAACCCAAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000297268.11
CDS-3UTR CCA 90 bp GGGGGAGCGGGGGAAGGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATACCTTGAACACCCTGTaGTCCAGGAGGTCCCTGAGC +
Preference number: 4 (lower is better)
Translates to: GGAGEGVNETVLHNALINTLNTL*SRRSLS
Trigger: GCTCAGGGACCTCCTGGACCACAGGGTGTTCAAGGT...ATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCCTTCCCCCGCTCCCCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR CCA 90 bp TCTCTGTCTAGGTCAGCACCTAACAATGTGGATCACACTCATGGGAAAGTGTTTAGCACCACTCTCACCTaGGGGACCGCGTTCCCCTCT +
Preference number: 4 (lower is better)
Translates to: SLSRSAPNNVDHTHGKVFSTTLT*GTAFPS
Trigger: AGAGGGGAACGCGGTCCCCCAGGTGAGAGTGGTGCT...AAACACTTTCCCATGAGTGTGATCCACATTGTTAGGTGCTGACCTAGACAGAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000297268.11
CDS-3UTR CCA 90 bp GGGGGAGCGGGGGAAGGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATTCCACTAGGACCAGATaGACCAGCAGTGCCCACAGC +
Preference number: 4 (lower is better)
Translates to: GGAGEGVNETVLHNALINSTRTR*TSSAHS
Trigger: GCTGTGGGCACTGCTGGTCCATCTGGTCCTAGTGGA...ATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCCTTCCCCCGCTCCCCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR CCA 90 bp GGGGGAGCGGGGGAAGGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATGCCACGAATGCCTTGTaGGCCACTAGGACCTCTTGG +
Preference number: 4 (lower is better)
Translates to: GGAGEGVNETVLHNALINATNAL*ATRTSW
Trigger: CCAAGAGGTCCTAGTGGCCCACAAGGCATTCGTGGC...ATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCCTTCCCCCGCTCCCCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR TCA 90 bp GGGGGAGCGGGGGAAGGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATCATAGTCCTTGGGTCTaGGAGAAGGTGCTGAGCGAG +
Preference number: 4 (lower is better)
Translates to: GGAGEGVNETVLHNALINHSPWV*EKVLSE
Trigger: CTCGCTCAGCACCTTCTCTCAGACCCAAGGACTATG...ATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCCTTCCCCCGCTCCCCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR GCA 90 bp GTTTGGGTTTTAAACTTCCCTCTGTGGAAGATATTCAAAAGCCACAAGTGGTGCCCACACTTCCATCACTaGCACGGGCACCAGCTGGGC +
Preference number: 4 (lower is better)
Translates to: VWVLNFPLWKIFKSHKWCPHFHH*HGHQLG
Trigger: GCCCAGCTGGTGCCCGTGGCAGTGATGGAAGTGTGG...GCACCACTTGTGGCTTTTGAATATCTTCCACAGAGGGAAGTTTAAAACCCAAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000297268.11
CDS-3UTR GCA 90 bp CATCTCTGTCTAGGTCAGCACCTAACAATGTGGATCACACTCATGGGAAAGTGTCAGATGGACCAGCAGTaGCCACAGCACCAACCACAC +
Preference number: 4 (lower is better)
Translates to: HLCLGQHLTMWITLMGKCQMDQQ*PQHQPH
Trigger: GTGTGGTTGGTGCTGTGGGCACTGCTGGTCCATCTG...ACACTTTCCCATGAGTGTGATCCACATTGTTAGGTGCTGACCTAGACAGAGATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000297268.11
CDS-3UTR CCA 90 bp GGGGGAGCGGGGGAAGGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATACCACGAGCACCCTGTaGTCCAACAACTCCTCTCTC +
Preference number: 4 (lower is better)
Translates to: GGAGEGVNETVLHNALINTTSTL*SNNSSL
Trigger: GAGAGAGGAGTTGTTGGACCACAGGGTGCTCGTGGT...ATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCCTTCCCCCGCTCCCCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR CCA 90 bp GGGGGAGCGGGGGAAGGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATTCCTTTGGAGCCAGCTaGACCAGGCTCACCAACAAG +
Preference number: 4 (lower is better)
Translates to: GGAGEGVNETVLHNALINSFGAS*TRLTNK
Trigger: CTTGTTGGTGAGCCTGGTCCAGCTGGCTCCAAAGGA...ATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCCTTCCCCCGCTCCCCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR CCA 90 bp TCTCTGTCTAGGTCAGCACCTAACAATGTGGATCACACTCATGGGAAAGTGTTTTCCTCTTGCTCCAGCTaGGCCAATTGGGCCAGGCCT +
Preference number: 4 (lower is better)
Translates to: SLSRSAPNNVDHTHGKVFSSCSS*ANWARP
Trigger: AGGCCTGGCCCAATTGGCCCAGCTGGAGCAAGAGGA...AAACACTTTCCCATGAGTGTGATCCACATTGTTAGGTGCTGACCTAGACAGAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000297268.11
CDS-3UTR CCA 90 bp AATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTTTGCCCCGCCCCGGTCACCTGTaGCTCCAGCAGGACCAGGGG +
Preference number: 4 (lower is better)
Translates to: NETVLHNALINPSFSLLPRPGHL*LQQDQG
Trigger: CCCCTGGTCCTGCTGGAGCCACAGGTGACCGGGGCG...GGGCAAAAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR CCA 90 bp GGGGGAGCGGGGGAAGGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATCTCCAACGGGGCCTGTaGGACCAACAACACCGTTTT +
Preference number: 4 (lower is better)
Translates to: GGAGEGVNETVLHNALINLQRGL*DQQHRF
Trigger: AAAACGGTGTTGTTGGTCCCACAGGCCCCGTTGGAG...ATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCCTTCCCCCGCTCCCCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR CCA 90 bp GGGGGAGCGGGGGAAGGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATACCACTGCTCCACTCTaGGTGGCTGAGTCTCAAGTC +
Preference number: 4 (lower is better)
Translates to: GGAGEGVNETVLHNALINTTAPL*VAESQV
Trigger: GACTTGAGACTCAGCCACCCAGAGTGGAGCAGTGGT...ATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCCTTCCCCCGCTCCCCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR TCA 90 bp GGGGGAGCGGGGGAAGGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATCCACGGGCTCCTGTTTaGCCTGGAGTTCCATTTTCA +
Preference number: 4 (lower is better)
Translates to: GGAGEGVNETVLHNALINPRAPV*PGVPFS
Trigger: TGAAAATGGAACTCCAGGTCAAACAGGAGCCCGTGG...ATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCCTTCCCCCGCTCCCCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR TCA 90 bp AATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTTTGCCCGGACCCACGGGGCCATaGGGACCAGGTGCACCTGCA +
Preference number: 4 (lower is better)
Translates to: NETVLHNALINPSFSLLPGPTGP*GPGAPA
Trigger: TGCAGGTGCACCTGGTCCTCATGGCCCCGTGGGTCC...GGGCAAAAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR GCA 90 bp AATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTTTGCCCTGGCGGGCGCGGGCATaGAGTCGTGGCCAGTACCTC +
Preference number: 4 (lower is better)
Translates to: NETVLHNALINPSFSLLPWRARA*SRGQYL
Trigger: GAGGTACTGGCCACGACTGCATGCCCGCGCCCGCCA...GGGCAAAAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR GCA 90 bp GGGGGAGCGGGGGAAGGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATACCAGTAAGGCCGTTTaGTCCAGGATTACCAGGAGG +
Preference number: 4 (lower is better)
Translates to: GGAGEGVNETVLHNALINTSKAV*SRITRR
Trigger: CCTCCTGGTAATCCTGGAGCAAACGGCCTTACTGGT...ATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCCTTCCCCCGCTCCCCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR CCA 90 bp TCTCTGTCTAGGTCAGCACCTAACAATGTGGATCACACTCATGGGAAAGTGTTTACCCCTTTCTCCACGTaGTCCTCTATCTCCGGCTGG +
Preference number: 4 (lower is better)
Translates to: SLSRSAPNNVDHTHGKVFTPFST*SSISGW
Trigger: CCAGCCGGAGATAGAGGACCACGTGGAGAAAGGGGT...AAACACTTTCCCATGAGTGTGATCCACATTGTTAGGTGCTGACCTAGACAGAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000297268.11
CDS-3UTR CCA 90 bp GGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTGCCACGGGCACCAGCTaGGCCAGGGGCACCAACACG +
Preference number: 4 (lower is better)
Translates to: GVNETVLHNALINPSFSLATGTS*ARGTNT
Trigger: CGTGTTGGTGCCCCTGGCCCAGCTGGTGCCCGTGGC...AAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR CCA 90 bp CATCTCTGTCTAGGTCAGCACCTAACAATGTGGATCACACTCATGGGAAAGTGTTCCTTTGGAGCCAGCTaGACCAGGCTCACCAACAAG +
Preference number: 4 (lower is better)
Translates to: HLCLGQHLTMWITLMGKCSFGAS*TRLTNK
Trigger: CTTGTTGGTGAGCCTGGTCCAGCTGGCTCCAAAGGA...ACACTTTCCCATGAGTGTGATCCACATTGTTAGGTGCTGACCTAGACAGAGATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000297268.11
CDS-3UTR CCA 90 bp GGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTGGACCAGGAGGACCTTaGGGCCCAGCAGAGCCGGGC +
Preference number: 4 (lower is better)
Translates to: GVNETVLHNALINPSFSLGPGGP*GPAEPG
Trigger: GCCCGGCTCTGCTGGGCCCCAAGGTCCTCCTGGTCC...AAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR CCA 90 bp AATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTTTGCCCCAGCCCAGGAGGTCCTaGAGGGCCGGCAGATCCAGC +
Preference number: 4 (lower is better)
Translates to: NETVLHNALINPSFSLLPQPRRS*RAGRSS
Trigger: GCTGGATCTGCCGGCCCTCCAGGACCTCCTGGGCTG...GGGCAAAAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR CCA 90 bp GTTTGGGTTTTAAACTTCCCTCTGTGGAAGATATTCAAAAGCCACAAGTGGTGCGTTTCCATCAGGACCTaGAGCACCCCGAGCACCAGC +
Preference number: 4 (lower is better)
Translates to: VWVLNFPLWKIFKSHKWCVSIRT*STPSTS
Trigger: GCTGGTGCTCGGGGTGCTCCAGGTCCTGATGGAAAC...GCACCACTTGTGGCTTTTGAATATCTTCCACAGAGGGAAGTTTAAAACCCAAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000297268.11
CDS-3UTR CCA 90 bp TTTGGAAGTTTGGGTTTTAAACTTCCCTCTGTGGAAGATATTCAAAAGCCACAAGGGCCAGGCAGACCCTaGAAGCCTGGAGGACCAGGG +
Preference number: 4 (lower is better)
Translates to: FGSLGFKLPSVEDIQKPQGPGRP*KPGGPG
Trigger: CCCTGGTCCTCCAGGCTTCCAGGGTCTGCCTGGCCC...TTGTGGCTTTTGAATATCTTCCACAGAGGGAAGTTTAAAACCCAAACTTCCAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000297268.11
CDS-3UTR CCA 90 bp AATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTTTGCCCGGGCCAGGCAGACCCTaGAAGCCTGGAGGACCAGGG +
Preference number: 4 (lower is better)
Translates to: NETVLHNALINPSFSLLPGPGRP*KPGGPG
Trigger: CCCTGGTCCTCCAGGCTTCCAGGGTCTGCCTGGCCC...GGGCAAAAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR CCA 90 bp GGGGGAGCGGGGGAAGGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATGAGACCCCTTTCTCCTaGTTTGCCAACTTCACCAGC +
Preference number: 4 (lower is better)
Translates to: GGAGEGVNETVLHNALINETPFS*FANFTS
Trigger: GCTGGTGAAGTTGGCAAACCAGGAGAAAGGGGTCTC...ATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCCTTCCCCCGCTCCCCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR CCA 90 bp GGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTCGCCCCGGTCACCTGTaGCTCCAGCAGGACCAGGGG +
Preference number: 4 (lower is better)
Translates to: GVNETVLHNALINPSFSLRPGHL*LQQDQG
Trigger: CCCCTGGTCCTGCTGGAGCCACAGGTGACCGGGGCG...AAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR CCA 90 bp GGGGGAGCGGGGGAAGGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATACGGCATGTGCGAGCTaGGTTCTTTCTAGAGCCTTC +
Preference number: 4 (lower is better)
Translates to: GGAGEGVNETVLHNALINTACAS*VLSRAF
Trigger: GAAGGCTCTAGAAAGAACCCAGCTCGCACATGCCGT...ATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCCTTCCCCCGCTCCCCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR TCA 90 bp GGGGGAGCGGGGGAAGGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATCCTTTTCCATCATACTaGGCAGCAAAGTTCCCACCG +
Preference number: 4 (lower is better)
Translates to: GGAGEGVNETVLHNALINPFPSY*AAKFPP
Trigger: CGGTGGGAACTTTGCTGCTCAGTATGATGGAAAAGG...ATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCCTTCCCCCGCTCCCCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR TCA 90 bp GTTTGGGTTTTAAACTTCCCTCTGTGGAAGATATTCAAAAGCCACAAGTGGTGCCCTGCAGGACCAGTTTaGCCAGGTTCACCAGGCTCA +
Preference number: 4 (lower is better)
Translates to: VWVLNFPLWKIFKSHKWCPAGPV*PGSPGS
Trigger: TGAGCCTGGTGAACCTGGTCAAACTGGTCCTGCAGG...GCACCACTTGTGGCTTTTGAATATCTTCCACAGAGGGAAGTTTAAAACCCAAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000297268.11
CDS-3UTR TCA 90 bp CATCTCTGTCTAGGTCAGCACCTAACAATGTGGATCACACTCATGGGAAAGTGTTCACCTTTTCCACCTTaGACACCCTGTGGTCCAGGA +
Preference number: 4 (lower is better)
Translates to: HLCLGQHLTMWITLMGKCSPFPP*TPCGPG
Trigger: TCCTGGACCACAGGGTGTTCAAGGTGGAAAAGGTGA...ACACTTTCCCATGAGTGTGATCCACATTGTTAGGTGCTGACCTAGACAGAGATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000297268.11
CDS-3UTR TCA 90 bp GGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTTTCACCAGCGGGACCTaGGGGGCCAGGCAGACCCTG +
Preference number: 4 (lower is better)
Translates to: GVNETVLHNALINPSFSLFTSGT*GARQTL
Trigger: CAGGGTCTGCCTGGCCCCTCAGGTCCCGCTGGTGAA...AAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR TCA 90 bp GTTTGGGTTTTAAACTTCCCTCTGTGGAAGATATTCAAAAGCCACAAGTGGTGCTCCACTCTGGGTGGCTaGGTCTCAAGTCACGGCATG +
Preference number: 4 (lower is better)
Translates to: VWVLNFPLWKIFKSHKWCSTLGG*VSSHGM
Trigger: CATGCCGTGACTTGAGACTCAGCCACCCAGAGTGGA...GCACCACTTGTGGCTTTTGAATATCTTCCACAGAGGGAAGTTTAAAACCCAAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000297268.11
CDS-3UTR GCA 90 bp GGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTCAGGCCTGCCGTCGATaGCAGGGAGGCCGACAGGAC +
Preference number: 4 (lower is better)
Translates to: GVNETVLHNALINPSFSLQACRR*QGGRQD
Trigger: GTCCTGTCGGCCTCCCTGGCATCGACGGCAGGCCTG...AAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR GCA 90 bp GGGGGAGCGGGGGAAGGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATCACGAGCACCATCTCTaGCAGGGTTACCAATTTCAC +
Preference number: 4 (lower is better)
Translates to: GGAGEGVNETVLHNALINHEHHL*QGYQFH
Trigger: GTGAAATTGGTAACCCTGGCAGAGATGGTGCTCGTG...ATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCCTTCCCCCGCTCCCCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR GCA 90 bp TCTCTGTCTAGGTCAGCACCTAACAATGTGGATCACACTCATGGGAAAGTGTTTCAACGGGACCAATATTaGCAGGGTAACCGCGCTCTC +
Preference number: 4 (lower is better)
Translates to: SLSRSAPNNVDHTHGKVFQRDQY*QGNRAL
Trigger: GAGAGCGCGGTTACCCTGGCAATATTGGTCCCGTTG...AAACACTTTCCCATGAGTGTGATCCACATTGTTAGGTGCTGACCTAGACAGAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000297268.11
CDS-3UTR GCA 90 bp GTTTGGGTTTTAAACTTCCCTCTGTGGAAGATATTCAAAAGCCACAAGTGGTGCCCTGAGGGCCTCGAATaGCAGCAGGTCCAACTGTAC +
Preference number: 4 (lower is better)
Translates to: VWVLNFPLWKIFKSHKWCPEGLE*QQVQLY
Trigger: GTACAGTTGGACCTGCTGGCATTCGAGGCCCTCAGG...GCACCACTTGTGGCTTTTGAATATCTTCCACAGAGGGAAGTTTAAAACCCAAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000297268.11
CDS-3UTR CCA 90 bp GGGGGAGCGGGGGAAGGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATTCCTCTATCTCCGGCTaGGCCCTTTCTTACAGTTTC +
Preference number: 4 (lower is better)
Translates to: GGAGEGVNETVLHNALINSSISG*ALSYSF
Trigger: GAAACTGTAAGAAAGGGCCCAGCCGGAGATAGAGGA...ATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCCTTCCCCCGCTCCCCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR CCA 90 bp TTTGGAAGTTTGGGTTTTAAACTTCCCTCTGTGGAAGATATTCAAAAGCCACAAGGCCAGCAGACCCAATaGGACCAGCAGGACCCACGG +
Preference number: 4 (lower is better)
Translates to: FGSLGFKLPSVEDIQKPQGQQTQ*DQQDPR
Trigger: CCGTGGGTCCTGCTGGTCCCATTGGGTCTGCTGGCC...TTGTGGCTTTTGAATATCTTCCACAGAGGGAAGTTTAAAACCCAAACTTCCAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000297268.11
CDS-3UTR CCA 90 bp GTTTGGGTTTTAAACTTCCCTCTGTGGAAGATATTCAAAAGCCACAAGTGGTGCTACCGCTCTCTCCTTTaGAGCCAGCTGGACCAGGCT +
Preference number: 4 (lower is better)
Translates to: VWVLNFPLWKIFKSHKWCYRSLL*SQLDQA
Trigger: AGCCTGGTCCAGCTGGCTCCAAAGGAGAGAGCGGTA...GCACCACTTGTGGCTTTTGAATATCTTCCACAGAGGGAAGTTTAAAACCCAAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000297268.11
CDS-3UTR CCA 90 bp GGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTCAGCCCAGGAGGTCCTaGAGGGCCGGCAGATCCAGC +
Preference number: 4 (lower is better)
Translates to: GVNETVLHNALINPSFSLQPRRS*RAGRSS
Trigger: GCTGGATCTGCCGGCCCTCCAGGACCTCCTGGGCTG...AAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR CCA 90 bp CATCTCTGTCTAGGTCAGCACCTAACAATGTGGATCACACTCATGGGAAAGTGTGAGACCCCTTTCTCCTaGTTTGCCAACTTCACCAGC +
Preference number: 4 (lower is better)
Translates to: HLCLGQHLTMWITLMGKCETPFS*FANFTS
Trigger: GCTGGTGAAGTTGGCAAACCAGGAGAAAGGGGTCTC...ACACTTTCCCATGAGTGTGATCCACATTGTTAGGTGCTGACCTAGACAGAGATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000297268.11
CDS-3UTR CCA 90 bp GGGGGAGCGGGGGAAGGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATAGACCAAACTCACCATaGAGACCCCTTTCTCCTGGT +
Preference number: 4 (lower is better)
Translates to: GGAGEGVNETVLHNALINRPNSP*RPLSPG
Trigger: ACCAGGAGAAAGGGGTCTCCATGGTGAGTTTGGTCT...ATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCCTTCCCCCGCTCCCCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR CCA 90 bp GTTTGGGTTTTAAACTTCCCTCTGTGGAAGATATTCAAAAGCCACAAGTGGTGCTCCACTAGGACCAGATaGACCAGCAGTGCCCACAGC +
Preference number: 4 (lower is better)
Translates to: VWVLNFPLWKIFKSHKWCSTRTR*TSSAHS
Trigger: GCTGTGGGCACTGCTGGTCCATCTGGTCCTAGTGGA...GCACCACTTGTGGCTTTTGAATATCTTCCACAGAGGGAAGTTTAAAACCCAAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000297268.11
CDS-3UTR CCA 90 bp GTTTGGGTTTTAAACTTCCCTCTGTGGAAGATATTCAAAAGCCACAAGTGGTGCGACCAGCAAATCCATTaGGGCCAGCAGGACCGACCT +
Preference number: 4 (lower is better)
Translates to: VWVLNFPLWKIFKSHKWCDQQIH*GQQDRP
Trigger: AGGTCGGTCCTGCTGGCCCCAATGGATTTGCTGGTC...GCACCACTTGTGGCTTTTGAATATCTTCCACAGAGGGAAGTTTAAAACCCAAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000297268.11
CDS-3UTR CCA 90 bp GTTTGGGTTTTAAACTTCCCTCTGTGGAAGATATTCAAAAGCCACAAGTGGTGCTCCAGTTCGGCCAACTaGACCTTGGTCACCACGAGG +
Preference number: 4 (lower is better)
Translates to: VWVLNFPLWKIFKSHKWCSSSAN*TLVTTR
Trigger: CCTCGTGGTGACCAAGGTCCAGTTGGCCGAACTGGA...GCACCACTTGTGGCTTTTGAATATCTTCCACAGAGGGAAGTTTAAAACCCAAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000297268.11
CDS-3UTR CCA 90 bp GTTTGGGTTTTAAACTTCCCTCTGTGGAAGATATTCAAAAGCCACAAGTGGTGCGCCACGAATGCCTTGTaGGCCACTAGGACCTCTTGG +
Preference number: 4 (lower is better)
Translates to: VWVLNFPLWKIFKSHKWCATNAL*ATRTSW
Trigger: CCAAGAGGTCCTAGTGGCCCACAAGGCATTCGTGGC...GCACCACTTGTGGCTTTTGAATATCTTCCACAGAGGGAAGTTTAAAACCCAAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000297268.11
CDS-3UTR CCA 90 bp CATCTCTGTCTAGGTCAGCACCTAACAATGTGGATCACACTCATGGGAAAGTGTACGGCATGTGCGAGCTaGGTTCTTTCTAGAGCCTTC +
Preference number: 4 (lower is better)
Translates to: HLCLGQHLTMWITLMGKCTACAS*VLSRAF
Trigger: GAAGGCTCTAGAAAGAACCCAGCTCGCACATGCCGT...ACACTTTCCCATGAGTGTGATCCACATTGTTAGGTGCTGACCTAGACAGAGATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000297268.11
CDS-3UTR CCA 90 bp GTTTGGGTTTTAAACTTCCCTCTGTGGAAGATATTCAAAAGCCACAAGTGGTGCCTGCTCCACTCTGGGTaGCTGAGTCTCAAGTCACGG +
Preference number: 4 (lower is better)
Translates to: VWVLNFPLWKIFKSHKWCLLHSG*LSLKSR
Trigger: CCGTGACTTGAGACTCAGCCACCCAGAGTGGAGCAG...GCACCACTTGTGGCTTTTGAATATCTTCCACAGAGGGAAGTTTAAAACCCAAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000297268.11
CDS-3UTR CCA 90 bp CATCTCTGTCTAGGTCAGCACCTAACAATGTGGATCACACTCATGGGAAAGTGTGGGATGTTTTCAGGTTaGGCCCGGATACAGGTTTCG +
Preference number: 4 (lower is better)
Translates to: HLCLGQHLTMWITLMGKCGMFSG*ARIQVS
Trigger: CGAAACCTGTATCCGGGCCCAACCTGAAAACATCCC...ACACTTTCCCATGAGTGTGATCCACATTGTTAGGTGCTGACCTAGACAGAGATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000297268.11
CDS-3UTR CCA 90 bp GGGGGAGCGGGGGAAGGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATTCCACAAAGAATTCCTaGTCAGCACCACCGATGTCC +
Preference number: 4 (lower is better)
Translates to: GGAGEGVNETVLHNALINSTKNS*SAPPMS
Trigger: GGACATCGGTGGTGCTGACCAGGAATTCTTTGTGGA...ATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCCTTCCCCCGCTCCCCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR TCA 90 bp GGGGGAGCGGGGGAAGGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATGCGTATCCACAAAGCTaGGCATGTCTAGCACTTAGA +
Preference number: 4 (lower is better)
Translates to: GGAGEGVNETVLHNALINAYPQS*ACLALR
Trigger: TCTAAGTGCTAGACATGCTCAGCTTTGTGGATACGC...ATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCCTTCCCCCGCTCCCCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR TCA 90 bp GGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTCCCTTGTGTCCGGGTTaGCCATCGCGACCTGGGGGA +
Preference number: 4 (lower is better)
Translates to: GVNETVLHNALINPSFSLPLCPG*PSRPGG
Trigger: TCCCCCAGGTCGCGATGGTCAACCCGGACACAAGGG...AAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR GCA 90 bp AATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTTTGCCCCCACACTTCCATCACTaGCACGGGCACCAGCTGGGC +
Preference number: 4 (lower is better)
Translates to: NETVLHNALINPSFSLLPPHFHH*HGHQLG
Trigger: GCCCAGCTGGTGCCCGTGGCAGTGATGGAAGTGTGG...GGGCAAAAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR GCA 90 bp GGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTCAATTGGGCCAGGCCTaGCGTCGATGCCAGGGAGGC +
Preference number: 4 (lower is better)
Translates to: GVNETVLHNALINPSFSLQLGQA*RRCQGG
Trigger: GCCTCCCTGGCATCGACGGCAGGCCTGGCCCAATTG...AAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR GCA 90 bp CATCTCTGTCTAGGTCAGCACCTAACAATGTGGATCACACTCATGGGAAAGTGTCACGAGCACCATCTCTaGCAGGGTTACCAATTTCAC +
Preference number: 4 (lower is better)
Translates to: HLCLGQHLTMWITLMGKCHEHHL*QGYQFH
Trigger: GTGAAATTGGTAACCCTGGCAGAGATGGTGCTCGTG...ACACTTTCCCATGAGTGTGATCCACATTGTTAGGTGCTGACCTAGACAGAGATG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000297268.11
CDS-3UTR GCA 90 bp GGGGGAGCGGGGGAAGGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATCAGCCTTTTTCAGGTTaGCAGTCTCCTCATCCATGT +
Preference number: 4 (lower is better)
Translates to: GGAGEGVNETVLHNALINQPFSG*QSPHPC
Trigger: ACATGGATGAGGAGACTGGCAACCTGAAAAAGGCTG...ATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCCTTCCCCCGCTCCCCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR CCA 90 bp CATCTCTGTCTAGGTCAGCACCTAACAATGTGGATCACACTCATGGGAAAGTGTTCCTCTATCTCCGGCTaGGCCCTTTCTTACAGTTTC +
Preference number: 4 (lower is better)
Translates to: HLCLGQHLTMWITLMGKCSSISG*ALSYSF
Trigger: GAAACTGTAAGAAAGGGCCCAGCCGGAGATAGAGGA...ACACTTTCCCATGAGTGTGATCCACATTGTTAGGTGCTGACCTAGACAGAGATG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000297268.11
CDS-3UTR CCA 90 bp TTTGGAAGTTTGGGTTTTAAACTTCCCTCTGTGGAAGATATTCAAAAGCCACAATTCACCATCTCTGCCTaGGGGGCCTGGTGGACCCCT +
Preference number: 4 (lower is better)
Translates to: FGSLGFKLPSVEDIQKPQFTISA*GAWWTP
Trigger: AGGGGTCCACCAGGCCCCCCAGGCAGAGATGGTGAA...TTGTGGCTTTTGAATATCTTCCACAGAGGGAAGTTTAAAACCCAAACTTCCAAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENST00000297268.11
CDS-3UTR CCA 90 bp GGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTGGCCAGCAGACCCAATaGGACCAGCAGGACCCACGG +
Preference number: 4 (lower is better)
Translates to: GVNETVLHNALINPSFSLGQQTQ*DQQDPR
Trigger: CCGTGGGTCCTGCTGGTCCCATTGGGTCTGCTGGCC...AAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR CCA 90 bp GGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTGGGGCCGGAGAGGCCTaGAAGACCCACTTCACCACG +
Preference number: 4 (lower is better)
Translates to: GVNETVLHNALINPSFSLGAGEA*KTHFTT
Trigger: CGTGGTGAAGTGGGTCTTCCAGGCCTCTCCGGCCCC...AAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR CCA 90 bp TTTGGAAGTTTGGGTTTTAAACTTCCCTCTGTGGAAGATATTCAAAAGCCACAATCCAGCTGGGCCAATTaGGCCAGGCCTGCCGTCGAT +
Preference number: 4 (lower is better)
Translates to: FGSLGFKLPSVEDIQKPQSSWAN*ARPAVD
Trigger: ATCGACGGCAGGCCTGGCCCAATTGGCCCAGCTGGA...TTGTGGCTTTTGAATATCTTCCACAGAGGGAAGTTTAAAACCCAAACTTCCAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000297268.11
CDS-3UTR TCA 90 bp GGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTGGTCCTTGGAAACCTTaGGGGCCTGGGGCTCCAGCT +
Preference number: 4 (lower is better)
Translates to: GVNETVLHNALINPSFSLGPWKP*GPGAPA
Trigger: AGCTGGAGCCCCAGGCCCTCAAGGTTTCCAAGGACC...AAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR TCA 90 bp GGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTTACCAGGAGGGCCCATaGCGCCAGCTCTGCCATCAG +
Preference number: 4 (lower is better)
Translates to: GVNETVLHNALINPSFSLYQEGP*RQLCHQ
Trigger: CTGATGGCAGAGCTGGCGTCATGGGCCCTCCTGGTA...AAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR TCA 90 bp AATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTTTGCCCCACCAGGAGCACCGTTaGCTCCAGGACTACCCACAG +
Preference number: 4 (lower is better)
Translates to: NETVLHNALINPSFSLLPHQEHR*LQDYPQ
Trigger: CTGTGGGTAGTCCTGGAGTCAACGGTGCTCCTGGTG...GGGCAAAAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR TCA 90 bp AATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTTTGCCCTCTGAGAGAAGGTGCTaGGCGAGGCTGGTCAGCCCT +
Preference number: 4 (lower is better)
Translates to: NETVLHNALINPSFSLLPSERRC*ARLVSP
Trigger: AGGGCTGACCAGCCTCGCTCAGCACCTTCTCTCAGA...GGGCAAAAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR GCA 90 bp AATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTTTGCCCTCCAGCAGGGCCACTTaGACCACGACTACCAGGAGG +
Preference number: 4 (lower is better)
Translates to: NETVLHNALINPSFSLLPSSRAT*TTTTRR
Trigger: CCTCCTGGTAGTCGTGGTGCAAGTGGCCCTGCTGGA...GGGCAAAAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR GCA 90 bp AATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTTTGCCCGCCAGGCTCTCCTCTTaGTCCAGCTGGGCCAATTGG +
Preference number: 4 (lower is better)
Translates to: NETVLHNALINPSFSLLPARLSS*SSWANW
Trigger: CCAATTGGCCCAGCTGGAGCAAGAGGAGAGCCTGGC...GGGCAAAAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR GCA 90 bp AATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTTTGCCCCCTTGCCTCCAGGTATaGCAGCAGCACCCCTCTCTC +
Preference number: 4 (lower is better)
Translates to: NETVLHNALINPSFSLLPPCLQV*QQHPSL
Trigger: GAGAGAGGGGTGCTGCTGGCATACCTGGAGGCAAGG...GGGCAAAAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR GCA 90 bp TTTGGAAGTTTGGGTTTTAAACTTCCCTCTGTGGAAGATATTCAAAAGCCACAACACGGTTTCCATGTTTaGCAGCAGGACCCACGGGGC +
Preference number: 4 (lower is better)
Translates to: FGSLGFKLPSVEDIQKPQHGFHV*QQDPRG
Trigger: GCCCCGTGGGTCCTGCTGGCAAACATGGAAACCGTG...TTGTGGCTTTTGAATATCTTCCACAGAGGGAAGTTTAAAACCCAAACTTCCAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000297268.11
CDS-3UTR GCA 90 bp GGGGGAGCGGGGGAAGGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATATACCAGGCAGACCTTaGAATCCATTGTGTCCCTTT +
Preference number: 4 (lower is better)
Translates to: GGAGEGVNETVLHNALINIPGRP*NPLCPF
Trigger: AAAGGGACACAATGGATTGCAAGGTCTGCCTGGTAT...ATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCCTTCCCCCGCTCCCCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR GCA 90 bp GGGGGAGCGGGGGAAGGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATCTCCTCATCCATGTATaGAATGCTGTTCTTGCAGTG +
Preference number: 4 (lower is better)
Translates to: GGAGEGVNETVLHNALINLLIHV*NAVLAV
Trigger: CACTGCAAGAACAGCATTGCATACATGGATGAGGAG...ATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCCTTCCCCCGCTCCCCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR CCA 90 bp GGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTTTCACCATCTCTGCCTaGGGGGCCTGGTGGACCCCT +
Preference number: 4 (lower is better)
Translates to: GVNETVLHNALINPSFSLFTISA*GAWWTP
Trigger: AGGGGTCCACCAGGCCCCCCAGGCAGAGATGGTGAA...AAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR CCA 90 bp GGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTGAAACCTTGAGGGCCTaGGGCTCCAGCTGCACCAGG +
Preference number: 4 (lower is better)
Translates to: GVNETVLHNALINPSFSLETLRA*GSSCTR
Trigger: CCTGGTGCAGCTGGAGCCCCAGGCCCTCAAGGTTTC...AAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR CCA 90 bp TTTGGAAGTTTGGGTTTTAAACTTCCCTCTGTGGAAGATATTCAAAAGCCACAACTCCAATTTCACCCTTaGGGCCAGGGGCACCTGGGA +
Preference number: 4 (lower is better)
Translates to: FGSLGFKLPSVEDIQKPQLQFHP*GQGHLG
Trigger: TCCCAGGTGCCCCTGGCCCCAAGGGTGAAATTGGAG...TTGTGGCTTTTGAATATCTTCCACAGAGGGAAGTTTAAAACCCAAACTTCCAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000297268.11
CDS-3UTR CCA 90 bp AATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTTTGCCCCTCCAATTTCACCCTTaGGGCCAGGGGCACCTGGGA +
Preference number: 4 (lower is better)
Translates to: NETVLHNALINPSFSLLPLQFHP*GQGHLG
Trigger: TCCCAGGTGCCCCTGGCCCCAAGGGTGAAATTGGAG...GGGCAAAAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR CCA 90 bp GGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTTCCAGCTGGGCCAATTaGGCCAGGCCTGCCGTCGAT +
Preference number: 4 (lower is better)
Translates to: GVNETVLHNALINPSFSLSSWAN*ARPAVD
Trigger: ATCGACGGCAGGCCTGGCCCAATTGGCCCAGCTGGA...AAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR CCA 90 bp GGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTACCGCGTTCCCCTCTTaGACCAGCAGGACCAGGGAG +
Preference number: 4 (lower is better)
Translates to: GVNETVLHNALINPSFSLTAFPS*TSRTRE
Trigger: CTCCCTGGTCCTGCTGGTCCAAGAGGGGAACGCGGT...AAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR CCA 90 bp GGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTAGCACCACTCTCACCTaGGGGACCGCGTTCCCCTCT +
Preference number: 4 (lower is better)
Translates to: GVNETVLHNALINPSFSLSTTLT*GTAFPS
Trigger: AGAGGGGAACGCGGTCCCCCAGGTGAGAGTGGTGCT...AAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR CCA 90 bp TTTGGAAGTTTGGGTTTTAAACTTCCCTCTGTGGAAGATATTCAAAAGCCACAAGTTTCCATCAGGCCCTaGGGGTCCAGAAGGACCTCG +
Preference number: 4 (lower is better)
Translates to: FGSLGFKLPSVEDIQKPQVSIRP*GSRRTS
Trigger: CGAGGTCCTTCTGGACCCCCAGGGCCTGATGGAAAC...TTGTGGCTTTTGAATATCTTCCACAGAGGGAAGTTTAAAACCCAAACTTCCAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000297268.11
CDS-3UTR CCA 90 bp TTTGGAAGTTTGGGTTTTAAACTTCCCTCTGTGGAAGATATTCAAAAGCCACAAACCATTTGGACCAGCTaGGCCAGCAGCTCCAACGGG +
Preference number: 4 (lower is better)
Translates to: FGSLGFKLPSVEDIQKPQTIWTS*ASSSNG
Trigger: CCCGTTGGAGCTGCTGGCCCAGCTGGTCCAAATGGT...TTGTGGCTTTTGAATATCTTCCACAGAGGGAAGTTTAAAACCCAAACTTCCAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000297268.11
CDS-3UTR CCA 90 bp TTTGGAAGTTTGGGTTTTAAACTTCCCTCTGTGGAAGATATTCAAAAGCCACAACGGCCAACTGGACCTTaGTCACCACGAGGACCACGA +
Preference number: 4 (lower is better)
Translates to: FGSLGFKLPSVEDIQKPQRPTGP*SPRGPR
Trigger: TCGTGGTCCTCGTGGTGACCAAGGTCCAGTTGGCCG...TTGTGGCTTTTGAATATCTTCCACAGAGGGAAGTTTAAAACCCAAACTTCCAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000297268.11
CDS-3UTR CCA 90 bp AATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTTTGCCCTTGACCATCGCGACCTaGGGGACCATCGTTCCCAGG +
Preference number: 4 (lower is better)
Translates to: NETVLHNALINPSFSLLPLTIAT*GTIVPR
Trigger: CCTGGGAACGATGGTCCCCCAGGTCGCGATGGTCAA...GGGCAAAAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR CCA 90 bp TTTGGAAGTTTGGGTTTTAAACTTCCCTCTGTGGAAGATATTCAAAAGCCACAAGCCACTAGGACCTCTTaGGCCAACAGCACCAGCAGG +
Preference number: 4 (lower is better)
Translates to: FGSLGFKLPSVEDIQKPQATRTS*ANSTSR
Trigger: CCTGCTGGTGCTGTTGGCCCAAGAGGTCCTAGTGGC...TTGTGGCTTTTGAATATCTTCCACAGAGGGAAGTTTAAAACCCAAACTTCCAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000297268.11
CDS-3UTR CCA 90 bp AATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTTTGCCCGCCACTAGGACCTCTTaGGCCAACAGCACCAGCAGG +
Preference number: 4 (lower is better)
Translates to: NETVLHNALINPSFSLLPATRTS*ANSTSR
Trigger: CCTGCTGGTGCTGTTGGCCCAAGAGGTCCTAGTGGC...GGGCAAAAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR CCA 90 bp GGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTACCACCGCTTACACCTaGAGGTCCAGGAGGGCCAGG +
Preference number: 4 (lower is better)
Translates to: GVNETVLHNALINPSFSLTTAYT*RSRRAR
Trigger: CCTGGCCCTCCTGGACCTCCAGGTGTAAGCGGTGGT...AAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR TCA 90 bp CATCTCTGTCTAGGTCAGCACCTAACAATGTGGATCACACTCATGGGAAAGTGTAAGGAAGGGCAGGCGTaGTGGCTTATTTGTTTTGTA +
Preference number: 4 (lower is better)
Translates to: HLCLGQHLTMWITLMGKCKEGQA*WLICFV
Trigger: TACAAAACAAATAAGCCATCACGCCTGCCCTTCCTT...ACACTTTCCCATGAGTGTGATCCACATTGTTAGGTGCTGACCTAGACAGAGATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000297268.11
CDS-3UTR GCA 90 bp AATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTTTGCCCTGGACCACGAGCACCTaGAGGACCAGTTTGACCAGG +
Preference number: 4 (lower is better)
Translates to: NETVLHNALINPSFSLLPWTTST*RTSLTR
Trigger: CCTGGTCAAACTGGTCCTGCAGGTGCTCGTGGTCCA...GGGCAAAAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR GCA 90 bp GGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTGCCAGGCTCTCCTCTTaGTCCAGCTGGGCCAATTGG +
Preference number: 4 (lower is better)
Translates to: GVNETVLHNALINPSFSLARLSS*SSWANW
Trigger: CCAATTGGCCCAGCTGGAGCAAGAGGAGAGCCTGGC...AAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR GCA 90 bp GTTTGGGTTTTAAACTTCCCTCTGTGGAAGATATTCAAAAGCCACAAGTGGTGCCTTTATCACCGTTTTTaGCAGGATCACCAGTGGGGC +
Preference number: 4 (lower is better)
Translates to: VWVLNFPLWKIFKSHKWCLYHRF*QDHQWG
Trigger: GCCCCACTGGTGATCCTGGCAAAAACGGTGATAAAG...GCACCACTTGTGGCTTTTGAATATCTTCCACAGAGGGAAGTTTAAAACCCAAAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENST00000297268.11
CDS-3UTR GCA 90 bp AATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTTTGCCCCAGATGGACCAGCAGTaGCCACAGCACCAACCACAC +
Preference number: 4 (lower is better)
Translates to: NETVLHNALINPSFSLLPQMDQQ*PQHQPH
Trigger: GTGTGGTTGGTGCTGTGGGCACTGCTGGTCCATCTG...GGGCAAAAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR GCA 90 bp GGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTCCTTGCCTCCAGGTATaGCAGCAGCACCCCTCTCTC +
Preference number: 4 (lower is better)
Translates to: GVNETVLHNALINPSFSLPCLQV*QQHPSL
Trigger: GAGAGAGGGGTGCTGCTGGCATACCTGGAGGCAAGG...AAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR GCA 90 bp GGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTCAGGAGGGCCGGCAATaGCAAGAGGACCAGGTTCAC +
Preference number: 4 (lower is better)
Translates to: GVNETVLHNALINPSFSLQEGRQ*QEDQVH
Trigger: GTGAACCTGGTCCTCTTGGCATTGCCGGCCCTCCTG...AAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR GCA 90 bp GGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTCACGGTTTCCATGTTTaGCAGCAGGACCCACGGGGC +
Preference number: 4 (lower is better)
Translates to: GVNETVLHNALINPSFSLHGFHV*QQDPRG
Trigger: GCCCCGTGGGTCCTGCTGGCAAACATGGAAACCGTG...AAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR GCA 90 bp TCTCTGTCTAGGTCAGCACCTAACAATGTGGATCACACTCATGGGAAAGTGTTTACCGATGTCCAAAGGTaGAATATCAAGGAAGGGCAG +
Preference number: 4 (lower is better)
Translates to: SLSRSAPNNVDHTHGKVFTDVQR*NIKEGQ
Trigger: CTGCCCTTCCTTGATATTGCACCTTTGGACATCGGT...AAACACTTTCCCATGAGTGTGATCCACATTGTTAGGTGCTGACCTAGACAGAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000297268.11
CDS-3UTR CCA 90 bp AATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTTTGCCCTACCGCTCTCTCCTTTaGAGCCAGCTGGACCAGGCT +
Preference number: 4 (lower is better)
Translates to: NETVLHNALINPSFSLLPYRSLL*SQLDQA
Trigger: AGCCTGGTCCAGCTGGCTCCAAAGGAGAGAGCGGTA...GGGCAAAAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR CCA 90 bp GGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTGTTTCCATCAGGCCCTaGGGGTCCAGAAGGACCTCG +
Preference number: 4 (lower is better)
Translates to: GVNETVLHNALINPSFSLVSIRP*GSRRTS
Trigger: CGAGGTCCTTCTGGACCCCCAGGGCCTGATGGAAAC...AAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR CCA 90 bp AATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTTTGCCCAGCACCCCTCTCTCCTaGGAGTCCACTAGGACCAGA +
Preference number: 4 (lower is better)
Translates to: NETVLHNALINPSFSLLPSTPLS*ESTRTR
Trigger: TCTGGTCCTAGTGGACTCCCAGGAGAGAGGGGTGCT...GGGCAAAAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR CCA 90 bp AATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTTTGCCCGACCAGCAAATCCATTaGGGCCAGCAGGACCGACCT +
Preference number: 4 (lower is better)
Translates to: NETVLHNALINPSFSLLPDQQIH*GQQDRP
Trigger: AGGTCGGTCCTGCTGGCCCCAATGGATTTGCTGGTC...GGGCAAAAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR CCA 90 bp GGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTAATACCAGAGGGTCCTaGGGGACCAGTCCGTCCAGC +
Preference number: 4 (lower is better)
Translates to: GVNETVLHNALINPSFSLNTRGS*GTSPSS
Trigger: GCTGGACGGACTGGTCCCCCAGGACCCTCTGGTATT...AAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR CCA 90 bp GGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTAGCCAGGAAGACCTCTaGGCCCCTTTTCACCGGGCT +
Preference number: 4 (lower is better)
Translates to: GVNETVLHNALINPSFSLSQEDL*APFHRA
Trigger: AGCCCGGTGAAAAGGGGCCCAGAGGTCTTCCTGGCT...AAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR CCA 90 bp GGGGGAGCGGGGGAAGGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATAGAAGGGTCTCAATCTaGTTGTTGAGAGACTTCAGA +
Preference number: 4 (lower is better)
Translates to: GGAGEGVNETVLHNALINRRVSI*LLRDFR
Trigger: TCTGAAGTCTCTCAACAACCAGATTGAGACCCTTCT...ATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCCTTCCCCCGCTCCCCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR CCA 90 bp GTTTGGGTTTTAAACTTCCCTCTGTGGAAGATATTCAAAAGCCACAAGTGGTGCTCCACAAAGAATTCCTaGTCAGCACCACCGATGTCC +
Preference number: 4 (lower is better)
Translates to: VWVLNFPLWKIFKSHKWCSTKNS*SAPPMS
Trigger: GGACATCGGTGGTGCTGACCAGGAATTCTTTGTGGA...GCACCACTTGTGGCTTTTGAATATCTTCCACAGAGGGAAGTTTAAAACCCAAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000297268.11
CDS-3UTR TCA 90 bp GGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTCCGGGTTTTCCAGGGTaGCCATCTTCACCAGCCTTG +
Preference number: 4 (lower is better)
Translates to: GVNETVLHNALINPSFSLPGFPG*PSSPAL
Trigger: CAAGGCTGGTGAAGATGGTCACCCTGGAAAACCCGG...AAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR GCA 90 bp GGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTTGGACCACGAGCACCTaGAGGACCAGTTTGACCAGG +
Preference number: 4 (lower is better)
Translates to: GVNETVLHNALINPSFSLWTTST*RTSLTR
Trigger: CCTGGTCAAACTGGTCCTGCAGGTGCTCGTGGTCCA...AAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR GCA 90 bp AATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTTTGCCCCCCTTTCTCCTGGTTTaGCAACTTCACCAGCGGGAC +
Preference number: 4 (lower is better)
Translates to: NETVLHNALINPSFSLLPPFLLV*QLHQRD
Trigger: GTCCCGCTGGTGAAGTTGGCAAACCAGGAGAAAGGG...GGGCAAAAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATT
44% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR CCA 90 bp AATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTTTGCCCACCACGAGCACCCTGTaGTCCAACAACTCCTCTCTC +
Preference number: 4 (lower is better)
Translates to: NETVLHNALINPSFSLLPTTSTL*SNNSSL
Trigger: GAGAGAGGAGTTGTTGGACCACAGGGTGCTCGTGGT...GGGCAAAAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR CCA 90 bp TTTGGAAGTTTGGGTTTTAAACTTCCCTCTGTGGAAGATATTCAAAAGCCACAACACCAGTGGGGCCTTTaGGTCCAGGGAATCCAATGT +
Preference number: 4 (lower is better)
Translates to: FGSLGFKLPSVEDIQKPQHQWGL*VQGIQC
Trigger: ACATTGGATTCCCTGGACCCAAAGGCCCCACTGGTG...TTGTGGCTTTTGAATATCTTCCACAGAGGGAAGTTTAAAACCCAAACTTCCAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000297268.11
CDS-3UTR CCA 90 bp GGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTACCTTGAACACCCTGTaGTCCAGGAGGTCCCTGAGC +
Preference number: 4 (lower is better)
Translates to: GVNETVLHNALINPSFSLTLNTL*SRRSLS
Trigger: GCTCAGGGACCTCCTGGACCACAGGGTGTTCAAGGT...AAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR CCA 90 bp GGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTTCCAGTTCGGCCAACTaGACCTTGGTCACCACGAGG +
Preference number: 4 (lower is better)
Translates to: GVNETVLHNALINPSFSLSSSAN*TLVTTR
Trigger: CCTCGTGGTGACCAAGGTCCAGTTGGCCGAACTGGA...AAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR CCA 90 bp GGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTCTGCTCCACTCTGGGTaGCTGAGTCTCAAGTCACGG +
Preference number: 4 (lower is better)
Translates to: GVNETVLHNALINPSFSLLLHSG*LSLKSR
Trigger: CCGTGACTTGAGACTCAGCCACCCAGAGTGGAGCAG...AAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR CCA 90 bp TTTGGAAGTTTGGGTTTTAAACTTCCCTCTGTGGAAGATATTCAAAAGCCACAAACCACTGCTCCACTCTaGGTGGCTGAGTCTCAAGTC +
Preference number: 4 (lower is better)
Translates to: FGSLGFKLPSVEDIQKPQTTAPL*VAESQV
Trigger: GACTTGAGACTCAGCCACCCAGAGTGGAGCAGTGGT...TTGTGGCTTTTGAATATCTTCCACAGAGGGAAGTTTAAAACCCAAACTTCCAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000297268.11
CDS-3UTR CCA 90 bp TCTCTGTCTAGGTCAGCACCTAACAATGTGGATCACACTCATGGGAAAGTGTTTCGTGTTTCTTGTCCTTaGAGCTCCTATACCAGTTCT +
Preference number: 4 (lower is better)
Translates to: SLSRSAPNNVDHTHGKVFRVSCP*SSYTSS
Trigger: AGAACTGGTATAGGAGCTCCAAGGACAAGAAACACG...AAACACTTTCCCATGAGTGTGATCCACATTGTTAGGTGCTGACCTAGACAGAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000297268.11
CDS-3UTR TCA 90 bp GGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTCATAGTCCTTGGGTCTaGGAGAAGGTGCTGAGCGAG +
Preference number: 4 (lower is better)
Translates to: GVNETVLHNALINPSFSLHSPWV*EKVLSE
Trigger: CTCGCTCAGCACCTTCTCTCAGACCCAAGGACTATG...AAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR TCA 90 bp GGGGGAGCGGGGGAAGGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATTTGAGTTCATTTATTTaGAACAGACTGGGCCAATGT +
Preference number: 4 (lower is better)
Translates to: GGAGEGVNETVLHNALINLSSFI*NRLGQC
Trigger: ACATTGGCCCAGTCTGTTTCAAATAAATGAACTCAA...ATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCCTTCCCCCGCTCCCCC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR GCA 90 bp GGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTCCCTTTCTCCTGGTTTaGCAACTTCACCAGCGGGAC +
Preference number: 4 (lower is better)
Translates to: GVNETVLHNALINPSFSLPFLLV*QLHQRD
Trigger: GTCCCGCTGGTGAAGTTGGCAAACCAGGAGAAAGGG...AAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR GCA 90 bp GGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTCAACGGGACCAATATTaGCAGGGTAACCGCGCTCTC +
Preference number: 4 (lower is better)
Translates to: GVNETVLHNALINPSFSLQRDQY*QGNRAL
Trigger: GAGAGCGCGGTTACCCTGGCAATATTGGTCCCGTTG...AAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR CCA 90 bp GGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTCACCAGTGGGGCCTTTaGGTCCAGGGAATCCAATGT +
Preference number: 4 (lower is better)
Translates to: GVNETVLHNALINPSFSLHQWGL*VQGIQC
Trigger: ACATTGGATTCCCTGGACCCAAAGGCCCCACTGGTG...AAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR CCA 90 bp GGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTCTCCAACGGGGCCTGTaGGACCAACAACACCGTTTT +
Preference number: 4 (lower is better)
Translates to: GVNETVLHNALINPSFSLLQRGL*DQQHRF
Trigger: AAAACGGTGTTGTTGGTCCCACAGGCCCCGTTGGAG...AAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR CCA 90 bp GGGGGAGCGGGGGAAGGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATACAGTTTCGAAAAATTaGCATGTTGCTAGGCATAAG +
Preference number: 4 (lower is better)
Translates to: GGAGEGVNETVLHNALINTVSKN*HVARHK
Trigger: CTTATGCCTAGCAACATGCCAATTTTTCGAAACTGT...ATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCCTTCCCCCGCTCCCCC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 1 transcripts:
ENST00000620463.1
CDS-3UTR TCA 90 bp AATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTTTGCCCCCTTTTCCATCATACTaGGCAGCAAAGTTCCCACCG +
Preference number: 4 (lower is better)
Translates to: NETVLHNALINPSFSLLPPFPSY*AAKFPP
Trigger: CGGTGGGAACTTTGCTGCTCAGTATGATGGAAAAGG...GGGCAAAAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR TCA 90 bp GGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTTCACCTTTTCCACCTTaGACACCCTGTGGTCCAGGA +
Preference number: 4 (lower is better)
Translates to: GVNETVLHNALINPSFSLSPFPP*TPCGPG
Trigger: TCCTGGACCACAGGGTGTTCAAGGTGGAAAAGGTGA...AAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR TCA 90 bp AATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTTTGCCCCAAGAACAGTGTAAGTaGACCTGCTGTTGCCCTCAG +
Preference number: 4 (lower is better)
Translates to: NETVLHNALINPSFSLLPQEQCK*TCCCPQ
Trigger: CTGAGGGCAACAGCAGGTTCACTTACACTGTTCTTG...GGGCAAAAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR CCA 90 bp TTTGGAAGTTTGGGTTTTAAACTTCCCTCTGTGGAAGATATTCAAAAGCCACAAGGCTCCTGTTTGACCTaGAGTTCCATTTTCACCAGG +
Preference number: 4 (lower is better)
Translates to: FGSLGFKLPSVEDIQKPQGSCLT*SSIFTR
Trigger: CCTGGTGAAAATGGAACTCCAGGTCAAACAGGAGCC...TTGTGGCTTTTGAATATCTTCCACAGAGGGAAGTTTAAAACCCAAACTTCCAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000297268.11
CDS-3UTR CCA 90 bp TTTGGAAGTTTGGGTTTTAAACTTCCCTCTGTGGAAGATATTCAAAAGCCACAAAGACCAAACTCACCATaGAGACCCCTTTCTCCTGGT +
Preference number: 4 (lower is better)
Translates to: FGSLGFKLPSVEDIQKPQRPNSP*RPLSPG
Trigger: ACCAGGAGAAAGGGGTCTCCATGGTGAGTTTGGTCT...TTGTGGCTTTTGAATATCTTCCACAGAGGGAAGTTTAAAACCCAAACTTCCAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000297268.11
CDS-3UTR CCA 90 bp GGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTGGGATGTTTTCAGGTTaGGCCCGGATACAGGTTTCG +
Preference number: 4 (lower is better)
Translates to: GVNETVLHNALINPSFSLGMFSG*ARIQVS
Trigger: CGAAACCTGTATCCGGGCCCAACCTGAAAACATCCC...AAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR CCA 90 bp GGGGGAGCGGGGGAAGGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATACATTATATTCAAACTaGCTGCCAGCATTGATAGTT +
Preference number: 4 (lower is better)
Translates to: GGAGEGVNETVLHNALINTLYSN*LPALIV
Trigger: AACTATCAATGCTGGCAGCCAGTTTGAATATAATGT...ATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCCTTCCCCCGCTCCCCC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR CCA 90 bp CATCTCTGTCTAGGTCAGCACCTAACAATGTGGATCACACTCATGGGAAAGTGTTTAAACTTCCCTCTGTaGAAGATATTCAAAAGCCAC +
Preference number: 4 (lower is better)
Translates to: HLCLGQHLTMWITLMGKCLNFPL*KIFKSH
Trigger: GTGGCTTTTGAATATCTTCCACAGAGGGAAGTTTAA...ACACTTTCCCATGAGTGTGATCCACATTGTTAGGTGCTGACCTAGACAGAGATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000297268.11
CDS-3UTR TCA 90 bp GGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTCAAGAACAGTGTAAGTaGACCTGCTGTTGCCCTCAG +
Preference number: 4 (lower is better)
Translates to: GVNETVLHNALINPSFSLQEQCK*TCCCPQ
Trigger: CTGAGGGCAACAGCAGGTTCACTTACACTGTTCTTG...AAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR GCA 90 bp GGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTCTTTATCACCGTTTTTaGCAGGATCACCAGTGGGGC +
Preference number: 4 (lower is better)
Translates to: GVNETVLHNALINPSFSLLYHRF*QDHQWG
Trigger: GCCCCACTGGTGATCCTGGCAAAAACGGTGATAAAG...AAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR GCA 90 bp GGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTTACCAGGATGTCCAGTaGGACCATCTTTTCCAGCAG +
Preference number: 4 (lower is better)
Translates to: GVNETVLHNALINPSFSLYQDVQ*DHLFQQ
Trigger: CTGCTGGAAAAGATGGTCGCACTGGACATCCTGGTA...AAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR GCA 90 bp AATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTTTGCCCACCGATGTCCAAAGGTaGAATATCAAGGAAGGGCAG +
Preference number: 4 (lower is better)
Translates to: NETVLHNALINPSFSLLPTDVQR*NIKEGQ
Trigger: CTGCCCTTCCTTGATATTGCACCTTTGGACATCGGT...GGGCAAAAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR CCA 90 bp GGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTGGCTCCTGTTTGACCTaGAGTTCCATTTTCACCAGG +
Preference number: 4 (lower is better)
Translates to: GVNETVLHNALINPSFSLGSCLT*SSIFTR
Trigger: CCTGGTGAAAATGGAACTCCAGGTCAAACAGGAGCC...AAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR CCA 90 bp AATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTTTGCCCATACCAGTTCTTGGCTaGGATGTTTTCAGGTTGGGC +
Preference number: 4 (lower is better)
Translates to: NETVLHNALINPSFSLLPIPVLG*DVFRLG
Trigger: GCCCAACCTGAAAACATCCCAGCCAAGAACTGGTAT...GGGCAAAAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR TCA 90 bp AATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTTTGCCCAAGGAAGGGCAGGCGTaGTGGCTTATTTGTTTTGTA +
Preference number: 4 (lower is better)
Translates to: NETVLHNALINPSFSLLPKEGQA*WLICFV
Trigger: TACAAAACAAATAAGCCATCACGCCTGCCCTTCCTT...GGGCAAAAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR TCA 90 bp GTTTGGGTTTTAAACTTCCCTCTGTGGAAGATATTCAAAAGCCACAAGTGGTGCTTGAGTTCATTTATTTaGAACAGACTGGGCCAATGT +
Preference number: 4 (lower is better)
Translates to: VWVLNFPLWKIFKSHKWCLSSFI*NRLGQC
Trigger: ACATTGGCCCAGTCTGTTTCAAATAAATGAACTCAA...GCACCACTTGTGGCTTTTGAATATCTTCCACAGAGGGAAGTTTAAAACCCAAAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000297268.11
CDS-3UTR GCA 90 bp TTTGGAAGTTTGGGTTTTAAACTTCCCTCTGTGGAAGATATTCAAAAGCCACAACTCCTCATCCATGTATaGAATGCTGTTCTTGCAGTG +
Preference number: 4 (lower is better)
Translates to: FGSLGFKLPSVEDIQKPQLLIHV*NAVLAV
Trigger: CACTGCAAGAACAGCATTGCATACATGGATGAGGAG...TTGTGGCTTTTGAATATCTTCCACAGAGGGAAGTTTAAAACCCAAACTTCCAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000297268.11
CDS-3UTR GCA 90 bp GGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTCAGCCTTTTTCAGGTTaGCAGTCTCCTCATCCATGT +
Preference number: 4 (lower is better)
Translates to: GVNETVLHNALINPSFSLQPFSG*QSPHPC
Trigger: ACATGGATGAGGAGACTGGCAACCTGAAAAAGGCTG...AAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR GCA 90 bp TCTCTGTCTAGGTCAGCACCTAACAATGTGGATCACACTCATGGGAAAGTGTTTAACTGTATTGCACAATaGTCTGATCAATCCTTCTTT +
Preference number: 4 (lower is better)
Translates to: SLSRSAPNNVDHTHGKVFNCIAQ*SDQSFF
Trigger: AAAGAAGGATTGATCAGAGCATTGTGCAATACAGTT...AAACACTTTCCCATGAGTGTGATCCACATTGTTAGGTGCTGACCTAGACAGAGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000297268.11
CDS-3UTR CCA 90 bp GGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTATACCAGTTCTTGGCTaGGATGTTTTCAGGTTGGGC +
Preference number: 4 (lower is better)
Translates to: GVNETVLHNALINPSFSLIPVLG*DVFRLG
Trigger: GCCCAACCTGAAAACATCCCAGCCAAGAACTGGTAT...AAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR CCA 90 bp GTTTGGGTTTTAAACTTCCCTCTGTGGAAGATATTCAAAAGCCACAAGTGGTGCTTATTTGAAACAGACTaGGCCAATGTCCACAAAGAA +
Preference number: 4 (lower is better)
Translates to: VWVLNFPLWKIFKSHKWCLFETD*ANVHKE
Trigger: TTCTTTGTGGACATTGGCCCAGTCTGTTTCAAATAA...GCACCACTTGTGGCTTTTGAATATCTTCCACAGAGGGAAGTTTAAAACCCAAAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000297268.11
CDS-3UTR GCA 90 bp GGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTATACCAGGCAGACCTTaGAATCCATTGTGTCCCTTT +
Preference number: 4 (lower is better)
Translates to: GVNETVLHNALINPSFSLIPGRP*NPLCPF
Trigger: AAAGGGACACAATGGATTGCAAGGTCTGCCTGGTAT...AAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR CCA 90 bp AATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTTTGCCCTCCTATACCAGTTCTTaGCTGGGATGTTTTCAGGTT +
Preference number: 4 (lower is better)
Translates to: NETVLHNALINPSFSLLPSYTSS*LGCFQV
Trigger: AACCTGAAAACATCCCAGCCAAGAACTGGTATAGGA...GGGCAAAAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR CCA 90 bp GGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTCGTGTTTCTTGTCCTTaGAGCTCCTATACCAGTTCT +
Preference number: 4 (lower is better)
Translates to: GVNETVLHNALINPSFSLRVSCP*SSYTSS
Trigger: AGAACTGGTATAGGAGCTCCAAGGACAAGAAACACG...AAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR CCA 90 bp GGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTCAGCACCTAACAATGTaGATCACACTCATGGGAAAG +
Preference number: 4 (lower is better)
Translates to: GVNETVLHNALINPSFSLQHLTM*ITLMGK
Trigger: CTTTCCCATGAGTGTGATCCACATTGTTAGGTGCTG...AAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000297268.11
CDS-3UTR CCA 90 bp TTTGGAAGTTTGGGTTTTAAACTTCCCTCTGTGGAAGATATTCAAAAGCCACAATCCTCTTGTAAAGATTaGCATGTTGCTAGGCATAAG +
Preference number: 4 (lower is better)
Translates to: FGSLGFKLPSVEDIQKPQSSCKD*HVARHK
Trigger: CTTATGCCTAGCAACATGCCAATCTTTACAAGAGGA...TTGTGGCTTTTGAATATCTTCCACAGAGGGAAGTTTAAAACCCAAACTTCCAAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000297268.11
CDS-3UTR CCA 90 bp GGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTAGAAGGGTCTCAATCTaGTTGTTGAGAGACTTCAGA +
Preference number: 4 (lower is better)
Translates to: GVNETVLHNALINPSFSLRRVSI*LLRDFR
Trigger: TCTGAAGTCTCTCAACAACCAGATTGAGACCCTTCT...AAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR TCA 90 bp AATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTTTGCCCTATTGCACAATGCTCTaGTCAATCCTTCTTTTTCTC +
Preference number: 4 (lower is better)
Translates to: NETVLHNALINPSFSLLPYCTML*SILLFL
Trigger: GAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATA...GGGCAAAAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR CCA 90 bp AATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTTTGCCCTTATTTGAAACAGACTaGGCCAATGTCCACAAAGAA +
Preference number: 4 (lower is better)
Translates to: NETVLHNALINPSFSLLPLFETD*ANVHKE
Trigger: TTCTTTGTGGACATTGGCCCAGTCTGTTTCAAATAA...GGGCAAAAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR TCA 90 bp GGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTTATTGCACAATGCTCTaGTCAATCCTTCTTTTTCTC +
Preference number: 4 (lower is better)
Translates to: GVNETVLHNALINPSFSLYCTML*SILLFL
Trigger: GAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATA...AAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR CCA 90 bp AATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTTTGCCCTTCAAAAGCCACAAGTaGTGCAAATGTTTATGGTTT +
Preference number: 4 (lower is better)
Translates to: NETVLHNALINPSFSLLPFKSHK*CKCLWF
Trigger: AAACCATAAACATTTGCACCACTTGTGGCTTTTGAA...GGGCAAAAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000297268.11
CDS-3UTR GCA 90 bp GGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTAACTGTATTGCACAATaGTCTGATCAATCCTTCTTT +
Preference number: 4 (lower is better)
Translates to: GVNETVLHNALINPSFSLNCIAQ*SDQSFF
Trigger: AAAGAAGGATTGATCAGAGCATTGTGCAATACAGTT...AAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCC
34% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS GCA 90 bp AGCCCCTGGGTCACCGGCGGAGGTATCACCTGGCGGGCGCGGGCATaGAGTCGTGGCCAGTACCTCCAACTTAGCCGAAACCTCCTGCTG +
Preference number: 5 (lower is better)
Translates to: SPWVTGGGITWRARA*SRGQYLQLSRNLLL
Trigger: CAGCAGGAGGTTTCGGCTAAGTTGGAGGTACTGGCCACGACTGCATGCCCGCGCCCGCCAGGTGATACCTCCGCCGGTGACCCAGGGGCT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000297268.11
CDS CCA 90 bp CTCCTTGTGTCGCAGAGCCCCTGGGTCACCGGCGGAGGTATCACCTaGCGGGCGCGGGCATGCAGTCGTGGCCAGTACCTCCAACTTAGC +
Preference number: 5 (lower is better)
Translates to: LLVSQSPWVTGGGIT*RARACSRGQYLQLS
Trigger: GCTAAGTTGGAGGTACTGGCCACGACTGCATGCCCGCGCCCGCCAGGTGATACCTCCGCCGGTGACCCAGGGGCTCTGCGACACAAGGAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS CCA 90 bp GTTTGCTCCAGGATTACCAGGAGGTCCAACGGGGCCGGAGAGGCCTaGAAGACCCACTTCACCACGGGGACCGGCGGGACCAGCAGGACC +
Preference number: 5 (lower is better)
Translates to: VCSRITRRSNGAGEA*KTHFTTGTGGTSRT
Trigger: GGTCCTGCTGGTCCCGCCGGTCCCCGTGGTGAAGTGGGTCTTCCAGGCCTCTCCGGCCCCGTTGGACCTCCTGGTAATCCTGGAGCAAAC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS CCA 90 bp GGGTCCAGGGAATCCAATGTTGCCAGGCTCTCCTCTTGCTCCAGCTaGGCCAATTGGGCCAGGCCTGCCGTCGATGCCAGGGAGGCCGAC +
Preference number: 5 (lower is better)
Translates to: GSRESNVARLSSCSS*ANWARPAVDAREAD
Trigger: GTCGGCCTCCCTGGCATCGACGGCAGGCCTGGCCCAATTGGCCCAGCTGGAGCAAGAGGAGAGCCTGGCAACATTGGATTCCCTGGACCC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS CCA 90 bp GGGGCCCAGCAGAGCCGGGCTCACCCTTGTTACCGCTCTCTCCTTTaGAGCCAGCTGGACCAGGCTCACCAACAAGTCCTCTGGCACCAG +
Preference number: 5 (lower is better)
Translates to: GAQQSRAHPCYRSLL*SQLDQAHQQVLWHQ
Trigger: CTGGTGCCAGAGGACTTGTTGGTGAGCCTGGTCCAGCTGGCTCCAAAGGAGAGAGCGGTAACAAGGGTGAGCCCGGCTCTGCTGGGCCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS GCA 90 bp GCGACCAGCATCTCCATTAGGTCCTCGGACTCCAGCAGGGCCACTTaGACCACGACTACCAGGAGGGCCCATGACGCCAGCTCTGCCATC +
Preference number: 5 (lower is better)
Translates to: ATSISIRSSDSSRAT*TTTTRRAHDASSAI
Trigger: GATGGCAGAGCTGGCGTCATGGGCCCTCCTGGTAGTCGTGGTGCAAGTGGCCCTGCTGGAGTCCGAGGACCTAATGGAGATGCTGGTCGC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS CCA 90 bp GAATCCAATGTTGCCAGGCTCTCCTCTTGCTCCAGCTGGGCCAATTaGGCCAGGCCTGCCGTCGATGCCAGGGAGGCCGACAGGACCTTC +
Preference number: 5 (lower is better)
Translates to: ESNVARLSSCSSWAN*ARPAVDAREADRTF
Trigger: GAAGGTCCTGTCGGCCTCCCTGGCATCGACGGCAGGCCTGGCCCAATTGGCCCAGCTGGAGCAAGAGGAGAGCCTGGCAACATTGGATTC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS CCA 90 bp AGGGTAACCGCGCTCTCCCTTGTGTCCGGGTTGACCATCGCGACCTaGGGGACCATCGTTCCCAGGGTTGCCATCACGACCAGCTTCACC +
Preference number: 5 (lower is better)
Translates to: RVTALSLVSGLTIAT*GTIVPRVAITTSFT
Trigger: GGTGAAGCTGGTCGTGATGGCAACCCTGGGAACGATGGTCCCCCAGGTCGCGATGGTCAACCCGGACACAAGGGAGAGCGCGGTTACCCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000297268.11
ENST00000469732.1
ENST00000481570.5
ENST00000620463.1
CDS TCA 90 bp GTTTCACCACGGTTTCCATGTTTGCCAGCAGGACCCACGGGGCCATaGGGACCAGGTGCACCTGCAGCACCAACGGGACCAATATTGCCA +
Preference number: 5 (lower is better)
Translates to: VSPRFPCLPAGPTGP*GPGAPAAPTGPILP
Trigger: TGGCAATATTGGTCCCGTTGGTGCTGCAGGTGCACCTGGTCCTCATGGCCCCGTGGGTCCTGCTGGCAAACATGGAAACCGTGGTGAAAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000297268.11
ENST00000478215.1
ENST00000481570.5
ENST00000620463.1
CDS CCA 90 bp GCAGACCTTGCAATCCATTGTGTCCCTTTAAGCCAGGAAGACCTCTaGGCCCCTTTTCACCGGGCTCTCCCTTATCGCCACGAATGCCTT +
Preference number: 5 (lower is better)
Translates to: ADLAIHCVPLSQEDL*APFHRALPYRHECL
Trigger: AAGGCATTCGTGGCGATAAGGGAGAGCCCGGTGAAAAGGGGCCCAGAGGTCTTCCTGGCTTAAAGGGACACAATGGATTGCAAGGTCTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000297268.11
ENST00000478215.1
ENST00000481570.5
ENST00000620463.1
CDS-3UTR CAA 90 bp GGGGGAGCGGGGGAAGGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATGACCGCGTTCCCCTCTaGGACCAGCAGGACCAGGGA +
Preference number: 5 (lower is better)
Translates to: GGAGEGVNETVLHNALINDRVPL*DQQDQG
Trigger: TCCCTGGTCCTGCTGGTCCAAGAGGGGAACGCGGTC...ATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCCTTCCCCCGCTCCCCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR CAA 90 bp GGGGGAGCGGGGGAAGGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATCCACGGTTTCCATGTTaGCCAGCAGGACCCACGGGG +
Preference number: 5 (lower is better)
Translates to: GGAGEGVNETVLHNALINPRFPC*PAGPTG
Trigger: CCCCGTGGGTCCTGCTGGCAAACATGGAAACCGTGG...ATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCCTTCCCCCGCTCCCCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS GCA 90 bp GTGCGAGATGGCTACAGTTTACTTACAGCGATACCAGGCAGACCTTaGAATCCATTGTGTCCCTTTAAGCCAGGAAGACCTCTGGGCCCC +
Preference number: 5 (lower is better)
Translates to: VRDGYSLLTAIPGRP*NPLCPFKPGRPLGP
Trigger: GGGGCCCAGAGGTCTTCCTGGCTTAAAGGGACACAATGGATTGCAAGGTCTGCCTGGTATCGCTGTAAGTAAACTGTAGCCATCTCGCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000478215.1
ENST00000481570.5
CDS-3UTR CAA 90 bp GGGGGAGCGGGGGAAGGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATAGACATGCAGACTCCTaGTGTCGCAGAGCCCCTGGG +
Preference number: 5 (lower is better)
Translates to: GGAGEGVNETVLHNALINRHADS*CRRAPG
Trigger: CCCAGGGGCTCTGCGACACAAGGAGTCTGCATGTCT...ATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCCTTCCCCCGCTCCCCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR CAA 90 bp CATCTCTGTCTAGGTCAGCACCTAACAATGTGGATCACACTCATGGGAAAGTGTCCATCTTCACCAGCCTaGCCAGGAGGGCCAGCTGGA +
Preference number: 5 (lower is better)
Translates to: HLCLGQHLTMWITLMGKCPSSPA*PGGPAG
Trigger: TCCAGCTGGCCCTCCTGGCAAGGCTGGTGAAGATGG...ACACTTTCCCATGAGTGTGATCCACATTGTTAGGTGCTGACCTAGACAGAGATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000297268.11
CDS-3UTR CAA 90 bp GGGGGAGCGGGGGAAGGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATAGGCCAGCAGCACCCTaGGCACCAGTAAGGCCGTTT +
Preference number: 5 (lower is better)
Translates to: GGAGEGVNETVLHNALINRPAAP*APVRPF
Trigger: AAACGGCCTTACTGGTGCCAAGGGTGCTGCTGGCCT...ATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCCTTCCCCCGCTCCCCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR CAA 90 bp CATCTCTGTCTAGGTCAGCACCTAACAATGTGGATCACACTCATGGGAAAGTGTAGACATGCAGACTCCTaGTGTCGCAGAGCCCCTGGG +
Preference number: 5 (lower is better)
Translates to: HLCLGQHLTMWITLMGKCRHADS*CRRAPG
Trigger: CCCAGGGGCTCTGCGACACAAGGAGTCTGCATGTCT...ACACTTTCCCATGAGTGTGATCCACATTGTTAGGTGCTGACCTAGACAGAGATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000297268.11
CDS-3UTR CAA 90 bp CATCTCTGTCTAGGTCAGCACCTAACAATGTGGATCACACTCATGGGAAAGTGTCTCACCAGCAGGTCCTaGGAAACCTTGAGGGCCTGG +
Preference number: 5 (lower is better)
Translates to: HLCLGQHLTMWITLMGKCLTSRS*ETLRAW
Trigger: CCAGGCCCTCAAGGTTTCCAAGGACCTGCTGGTGAG...ACACTTTCCCATGAGTGTGATCCACATTGTTAGGTGCTGACCTAGACAGAGATG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000297268.11
CDS-3UTR CAA 90 bp GGGGGAGCGGGGGAAGGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATACCTGCAGGACCAGTTaGACCAGGTTCACCAGGCTC +
Preference number: 5 (lower is better)
Translates to: GGAGEGVNETVLHNALINTCRTS*TRFTRL
Trigger: GAGCCTGGTGAACCTGGTCAAACTGGTCCTGCAGGT...ATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCCTTCCCCCGCTCCCCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR CAA 90 bp GTTTGGGTTTTAAACTTCCCTCTGTGGAAGATATTCAAAAGCCACAAGTGGTGCGCTCCAATTTCACCCTaGGGGCCAGGGGCACCTGGG +
Preference number: 5 (lower is better)
Translates to: VWVLNFPLWKIFKSHKWCAPISP*GPGAPG
Trigger: CCCAGGTGCCCCTGGCCCCAAGGGTGAAATTGGAGC...GCACCACTTGTGGCTTTTGAATATCTTCCACAGAGGGAAGTTTAAAACCCAAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENST00000297268.11
CDS-3UTR CAA 90 bp GTTTGGGTTTTAAACTTCCCTCTGTGGAAGATATTCAAAAGCCACAAGTGGTGCGACCGCGTTCCCCTCTaGGACCAGCAGGACCAGGGA +
Preference number: 5 (lower is better)
Translates to: VWVLNFPLWKIFKSHKWCDRVPL*DQQDQG
Trigger: TCCCTGGTCCTGCTGGTCCAAGAGGGGAACGCGGTC...GCACCACTTGTGGCTTTTGAATATCTTCCACAGAGGGAAGTTTAAAACCCAAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000297268.11
CDS-3UTR CAA 90 bp GTTTGGGTTTTAAACTTCCCTCTGTGGAAGATATTCAAAAGCCACAAGTGGTGCTCCCTTGTGTCCGGGTaGACCATCGCGACCTGGGGG +
Preference number: 5 (lower is better)
Translates to: VWVLNFPLWKIFKSHKWCSLVSG*TIATWG
Trigger: CCCCCAGGTCGCGATGGTCAACCCGGACACAAGGGA...GCACCACTTGTGGCTTTTGAATATCTTCCACAGAGGGAAGTTTAAAACCCAAAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000297268.11
CDS-3UTR CAA 90 bp GGGGGAGCGGGGGAAGGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATATCGCCACGAATGCCTaGTGGGCCACTAGGACCTCT +
Preference number: 5 (lower is better)
Translates to: GGAGEGVNETVLHNALINIATNA*WATRTS
Trigger: AGAGGTCCTAGTGGCCCACAAGGCATTCGTGGCGAT...ATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCCTTCCCCCGCTCCCCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS TCA 90 bp CAGAGTAGCATCAACTTCATAGTCCTTGGGTCTGAGAGAAGGTGCTaGGCGAGGCTGGTCAGCCCTGTAGAAGTCTCCATCGTAACCAAA +
Preference number: 5 (lower is better)
Translates to: QSSINFIVLGSERRC*ARLVSPVEVSIVTK
Trigger: TTTGGTTACGATGGAGACTTCTACAGGGCTGACCAGCCTCGCTCAGCACCTTCTCTCAGACCCAAGGACTATGAAGTTGATGCTACTCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000297268.11
ENST00000464916.1
ENST00000481570.5
ENST00000620463.1
CDS-3UTR CAA 90 bp GGGGGAGCGGGGGAAGGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATGTCCCATTAAGCCCATaGGTCCAGGGCCAAGTCCAA +
Preference number: 5 (lower is better)
Translates to: GGAGEGVNETVLHNALINVPLSP*VQGQVQ
Trigger: TTGGACTTGGCCCTGGACCAATGGGCTTAATGGGAC...ATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCCTTCCCCCGCTCCCCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR CAA 90 bp GGGGGAGCGGGGGAAGGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATCCCACGGGCTCCTGTTaGACCTGGAGTTCCATTTTC +
Preference number: 5 (lower is better)
Translates to: GGAGEGVNETVLHNALINPTGSC*TWSSIF
Trigger: GAAAATGGAACTCCAGGTCAAACAGGAGCCCGTGGG...ATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCCTTCCCCCGCTCCCCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR CAA 90 bp CATCTCTGTCTAGGTCAGCACCTAACAATGTGGATCACACTCATGGGAAAGTGTTCACCAGTGGGGCCTTaGGGTCCAGGGAATCCAATG +
Preference number: 5 (lower is better)
Translates to: HLCLGQHLTMWITLMGKCSPVGP*GPGNPM
Trigger: CATTGGATTCCCTGGACCCAAAGGCCCCACTGGTGA...ACACTTTCCCATGAGTGTGATCCACATTGTTAGGTGCTGACCTAGACAGAGATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000297268.11
CDS-3UTR CAA 90 bp GTTTGGGTTTTAAACTTCCCTCTGTGGAAGATATTCAAAAGCCACAAGTGGTGCGGACCAGCAAATCCATaGGGGCCAGCAGGACCGACC +
Preference number: 5 (lower is better)
Translates to: VWVLNFPLWKIFKSHKWCGPANP*GPAGPT
Trigger: GGTCGGTCCTGCTGGCCCCAATGGATTTGCTGGTCC...GCACCACTTGTGGCTTTTGAATATCTTCCACAGAGGGAAGTTTAAAACCCAAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000297268.11
CDS-3UTR CAA 90 bp TCTCTGTCTAGGTCAGCACCTAACAATGTGGATCACACTCATGGGAAAGTGTTTGGAGCCAGGAGCACCTaGATCACCATGGTGACCAGC +
Preference number: 5 (lower is better)
Translates to: SLSRSAPNNVDHTHGKVFGARST*ITMVTS
Trigger: GCTGGTCACCATGGTGATCAAGGTGCTCCTGGCTCC...AAACACTTTCCCATGAGTGTGATCCACATTGTTAGGTGCTGACCTAGACAGAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000297268.11
CDS-3UTR CAA 90 bp AATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTTTGCCCCTCCAGCTGGGCCAATaGGGCCAGGCCTGCCGTCGA +
Preference number: 5 (lower is better)
Translates to: NETVLHNALINPSFSLLPLQLGQ*GQACRR
Trigger: TCGACGGCAGGCCTGGCCCAATTGGCCCAGCTGGAG...GGGCAAAAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS CCA 90 bp TCCTTGGAGCTCCTATACCAGTTCTTGGCTGGGATGTTTTCAGGTTaGGCCCGGATACAGGTTTCGCCAGTAGAGAAATCACAGTATACT +
Preference number: 5 (lower is better)
Translates to: SLELLYQFLAGMFSG*ARIQVSPVEKSQYT
Trigger: AGTATACTGTGATTTCTCTACTGGCGAAACCTGTATCCGGGCCCAACCTGAAAACATCCCAGCCAAGAACTGGTATAGGAGCTCCAAGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000297268.11
ENST00000464916.1
ENST00000481570.5
ENST00000620463.1
CDS-3UTR CAA 90 bp GTTTGGGTTTTAAACTTCCCTCTGTGGAAGATATTCAAAAGCCACAAGTGGTGCACCTGCAGGACCAGTTaGACCAGGTTCACCAGGCTC +
Preference number: 5 (lower is better)
Translates to: VWVLNFPLWKIFKSHKWCTCRTS*TRFTRL
Trigger: GAGCCTGGTGAACCTGGTCAAACTGGTCCTGCAGGT...GCACCACTTGTGGCTTTTGAATATCTTCCACAGAGGGAAGTTTAAAACCCAAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000297268.11
CDS-3UTR CAA 90 bp AATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTTTGCCCGCTCCAATTTCACCCTaGGGGCCAGGGGCACCTGGG +
Preference number: 5 (lower is better)
Translates to: NETVLHNALINPSFSLLPAPISP*GPGAPG
Trigger: CCCAGGTGCCCCTGGCCCCAAGGGTGAAATTGGAGC...GGGCAAAAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR CAA 90 bp GGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTCTCCAGCTGGGCCAATaGGGCCAGGCCTGCCGTCGA +
Preference number: 5 (lower is better)
Translates to: GVNETVLHNALINPSFSLLQLGQ*GQACRR
Trigger: TCGACGGCAGGCCTGGCCCAATTGGCCCAGCTGGAG...AAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR CAA 90 bp AATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTTTGCCCTCCCTTGTGTCCGGGTaGACCATCGCGACCTGGGGG +
Preference number: 5 (lower is better)
Translates to: NETVLHNALINPSFSLLPSLVSG*TIATWG
Trigger: CCCCCAGGTCGCGATGGTCAACCCGGACACAAGGGA...GGGCAAAAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR CAA 90 bp GGGGGAGCGGGGGAAGGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATGATACCAGGCAGACCTaGCAATCCATTGTGTCCCTT +
Preference number: 5 (lower is better)
Translates to: GGAGEGVNETVLHNALINDTRQT*QSIVSL
Trigger: AAGGGACACAATGGATTGCAAGGTCTGCCTGGTATC...ATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCCTTCCCCCGCTCCCCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS CCA 90 bp AATCCTTCTGAGCTGAAGGCCTTCAGGATCAGTTTATGTGCGAGATaGCTACAGTTTACTTACAGCGATACCAGGCAGACCTTGCAATCC +
Preference number: 5 (lower is better)
Translates to: NPSELKAFRISLCAR*LQFTYSDTRQTLQS
Trigger: GGATTGCAAGGTCTGCCTGGTATCGCTGTAAGTAAACTGTAGCCATCTCGCACATAAACTGATCCTGAAGGCCTTCAGCTCAGAAGGATT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000478215.1
ENST00000481570.5
CDS-3UTR CAA 90 bp AATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTTTGCCCTCGGCCAACTGGACCTaGGTCACCACGAGGACCACG +
Preference number: 5 (lower is better)
Translates to: NETVLHNALINPSFSLLPSANWT*VTTRTT
Trigger: CGTGGTCCTCGTGGTGACCAAGGTCCAGTTGGCCGA...GGGCAAAAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR CAA 90 bp TTTGGAAGTTTGGGTTTTAAACTTCCCTCTGTGGAAGATATTCAAAAGCCACAACCACGGTTTCCATGTTaGCCAGCAGGACCCACGGGG +
Preference number: 5 (lower is better)
Translates to: FGSLGFKLPSVEDIQKPQPRFPC*PAGPTG
Trigger: CCCCGTGGGTCCTGCTGGCAAACATGGAAACCGTGG...TTGTGGCTTTTGAATATCTTCCACAGAGGGAAGTTTAAAACCCAAACTTCCAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000297268.11
CDS-3UTR CAA 90 bp CATCTCTGTCTAGGTCAGCACCTAACAATGTGGATCACACTCATGGGAAAGTGTGATACCAGGCAGACCTaGCAATCCATTGTGTCCCTT +
Preference number: 5 (lower is better)
Translates to: HLCLGQHLTMWITLMGKCDTRQT*QSIVSL
Trigger: AAGGGACACAATGGATTGCAAGGTCTGCCTGGTATC...ACACTTTCCCATGAGTGTGATCCACATTGTTAGGTGCTGACCTAGACAGAGATG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000297268.11
CDS-3UTR CAA 90 bp TCTCTGTCTAGGTCAGCACCTAACAATGTGGATCACACTCATGGGAAAGTGTTTTGGGATGTTTTCAGGTaGGGCCCGGATACAGGTTTC +
Preference number: 5 (lower is better)
Translates to: SLSRSAPNNVDHTHGKVFWDVFR*GPDTGF
Trigger: GAAACCTGTATCCGGGCCCAACCTGAAAACATCCCA...AAACACTTTCCCATGAGTGTGATCCACATTGTTAGGTGCTGACCTAGACAGAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000297268.11
CDS-3UTR CAA 90 bp GGGGGAGCGGGGGAAGGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATCTCCTATACCAGTTCTaGGCTGGGATGTTTTCAGGT +
Preference number: 5 (lower is better)
Translates to: GGAGEGVNETVLHNALINLLYQF*AGMFSG
Trigger: ACCTGAAAACATCCCAGCCAAGAACTGGTATAGGAG...ATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCCTTCCCCCGCTCCCCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS CCA 90 bp CTATCTCCGGCTGGGCCCTTTCTTACAGTTTCCTCTTGTAAAGATTaGCATGTTGCTAGGCATAAGGTTACTGCAAGCAGCAACAAAGTC +
Preference number: 5 (lower is better)
Translates to: LSPAGPFLTVSSCKD*HVARHKVTASSNKV
Trigger: GACTTTGTTGCTGCTTGCAGTAACCTTATGCCTAGCAACATGCCAATCTTTACAAGAGGAAACTGTAAGAAAGGGCCCAGCCGGAGATAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000297268.11
CDS-3UTR CAA 90 bp AATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTTTGCCCCTCACCAGCAGGTCCTaGGAAACCTTGAGGGCCTGG +
Preference number: 5 (lower is better)
Translates to: NETVLHNALINPSFSLLPLTSRS*ETLRAW
Trigger: CCAGGCCCTCAAGGTTTCCAAGGACCTGCTGGTGAG...GGGCAAAAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR CAA 90 bp GGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTCCATCTTCACCAGCCTaGCCAGGAGGGCCAGCTGGA +
Preference number: 5 (lower is better)
Translates to: GVNETVLHNALINPSFSLPSSPA*PGGPAG
Trigger: TCCAGCTGGCCCTCCTGGCAAGGCTGGTGAAGATGG...AAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR CAA 90 bp TTTGGAAGTTTGGGTTTTAAACTTCCCTCTGTGGAAGATATTCAAAAGCCACAAAGGCCAGCAGCACCCTaGGCACCAGTAAGGCCGTTT +
Preference number: 5 (lower is better)
Translates to: FGSLGFKLPSVEDIQKPQRPAAP*APVRPF
Trigger: AAACGGCCTTACTGGTGCCAAGGGTGCTGCTGGCCT...TTGTGGCTTTTGAATATCTTCCACAGAGGGAAGTTTAAAACCCAAACTTCCAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000297268.11
CDS-3UTR CAA 90 bp AATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTTTGCCCGAGCCGGGCTCACCCTaGTTACCGCTCTCTCCTTTG +
Preference number: 5 (lower is better)
Translates to: NETVLHNALINPSFSLLPEPGSP*LPLSPL
Trigger: CAAAGGAGAGAGCGGTAACAAGGGTGAGCCCGGCTC...GGGCAAAAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR CAA 90 bp GTTTGGGTTTTAAACTTCCCTCTGTGGAAGATATTCAAAAGCCACAAGTGGTGCTTCACCTTTTCCACCTaGAACACCCTGTGGTCCAGG +
Preference number: 5 (lower is better)
Translates to: VWVLNFPLWKIFKSHKWCFTFST*NTLWSR
Trigger: CCTGGACCACAGGGTGTTCAAGGTGGAAAAGGTGAA...GCACCACTTGTGGCTTTTGAATATCTTCCACAGAGGGAAGTTTAAAACCCAAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000297268.11
CDS-3UTR CAA 90 bp GGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTGGACCAGCAAATCCATaGGGGCCAGCAGGACCGACC +
Preference number: 5 (lower is better)
Translates to: GVNETVLHNALINPSFSLGPANP*GPAGPT
Trigger: GGTCGGTCCTGCTGGCCCCAATGGATTTGCTGGTCC...AAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR CAA 90 bp GGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTTCGGCCAACTGGACCTaGGTCACCACGAGGACCACG +
Preference number: 5 (lower is better)
Translates to: GVNETVLHNALINPSFSLSANWT*VTTRTT
Trigger: CGTGGTCCTCGTGGTGACCAAGGTCCAGTTGGCCGA...AAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR CAA 90 bp AATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTTTGCCCGGAGCCAGGAGCACCTaGATCACCATGGTGACCAGC +
Preference number: 5 (lower is better)
Translates to: NETVLHNALINPSFSLLPGARST*ITMVTS
Trigger: GCTGGTCACCATGGTGATCAAGGTGCTCCTGGCTCC...GGGCAAAAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS CCA 90 bp GTCATTTTTAGGATTGTTGTGTGTATGTCCCTCTATGTGTGTCTTTaGGAGCGGGACCTGGGTGGGTATGTAGTCTTGCTGTTAGTGAAT +
Preference number: 5 (lower is better)
Translates to: VIFRIVVCMSLYVCL*ERDLGGYVVLLLVN
Trigger: ATTCACTAACAGCAAGACTACATACCCACCCAGGTCCCGCTCCCAAAGACACACATAGAGGGACATACACACAACAATCCTAAAAATGAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000481570.5
CDS-3UTR CAA 90 bp GGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTGAGCCGGGCTCACCCTaGTTACCGCTCTCTCCTTTG +
Preference number: 5 (lower is better)
Translates to: GVNETVLHNALINPSFSLEPGSP*LPLSPL
Trigger: CAAAGGAGAGAGCGGTAACAAGGGTGAGCCCGGCTC...AAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR CAA 90 bp TTTGGAAGTTTGGGTTTTAAACTTCCCTCTGTGGAAGATATTCAAAAGCCACAAACACCAGGTTCACCCTaGTTTCCATCAGGCCCTGGG +
Preference number: 5 (lower is better)
Translates to: FGSLGFKLPSVEDIQKPQTPGSP*FPSGPG
Trigger: CCCAGGGCCTGATGGAAACAAGGGTGAACCTGGTGT...TTGTGGCTTTTGAATATCTTCCACAGAGGGAAGTTTAAAACCCAAACTTCCAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000297268.11
CDS-3UTR CAA 90 bp TTTGGAAGTTTGGGTTTTAAACTTCCCTCTGTGGAAGATATTCAAAAGCCACAATCACCAGGAGCACCGTaGACTCCAGGACTACCCACA +
Preference number: 5 (lower is better)
Translates to: FGSLGFKLPSVEDIQKPQSPGAP*TPGLPT
Trigger: TGTGGGTAGTCCTGGAGTCAACGGTGCTCCTGGTGA...TTGTGGCTTTTGAATATCTTCCACAGAGGGAAGTTTAAAACCCAAACTTCCAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000297268.11
CDS-3UTR CAA 90 bp TCTCTGTCTAGGTCAGCACCTAACAATGTGGATCACACTCATGGGAAAGTGTTTCTCCTATACCAGTTCTaGGCTGGGATGTTTTCAGGT +
Preference number: 5 (lower is better)
Translates to: SLSRSAPNNVDHTHGKVFLLYQF*AGMFSG
Trigger: ACCTGAAAACATCCCAGCCAAGAACTGGTATAGGAG...AAACACTTTCCCATGAGTGTGATCCACATTGTTAGGTGCTGACCTAGACAGAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000297268.11
CDS-3UTR CAA 90 bp AATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTTTGCCCCCCACGGGCTCCTGTTaGACCTGGAGTTCCATTTTC +
Preference number: 5 (lower is better)
Translates to: NETVLHNALINPSFSLLPPTGSC*TWSSIF
Trigger: GAAAATGGAACTCCAGGTCAAACAGGAGCCCGTGGG...GGGCAAAAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATT
44% GC, longest homopolymer 6 nt, total homopolymer stretches 19 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR CAA 90 bp AATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTTTGCCCCCAGGGAATCCAATGTaGCCAGGCTCTCCTCTTGCT +
Preference number: 5 (lower is better)
Translates to: NETVLHNALINPSFSLLPPGNPM*PGSPLA
Trigger: AGCAAGAGGAGAGCCTGGCAACATTGGATTCCCTGG...GGGCAAAAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR CAA 90 bp GGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTTCACCAGTGGGGCCTTaGGGTCCAGGGAATCCAATG +
Preference number: 5 (lower is better)
Translates to: GVNETVLHNALINPSFSLSPVGP*GPGNPM
Trigger: CATTGGATTCCCTGGACCCAAAGGCCCCACTGGTGA...AAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR CAA 90 bp GGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTACACCAGGTTCACCCTaGTTTCCATCAGGCCCTGGG +
Preference number: 5 (lower is better)
Translates to: GVNETVLHNALINPSFSLTPGSP*FPSGPG
Trigger: CCCAGGGCCTGATGGAAACAAGGGTGAACCTGGTGT...AAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR CAA 90 bp GGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTTCACCAGGAGCACCGTaGACTCCAGGACTACCCACA +
Preference number: 5 (lower is better)
Translates to: GVNETVLHNALINPSFSLSPGAP*TPGLPT
Trigger: TGTGGGTAGTCCTGGAGTCAACGGTGCTCCTGGTGA...AAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR CAA 90 bp GGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTATCGCCACGAATGCCTaGTGGGCCACTAGGACCTCT +
Preference number: 5 (lower is better)
Translates to: GVNETVLHNALINPSFSLIATNA*WATRTS
Trigger: AGAGGTCCTAGTGGCCCACAAGGCATTCGTGGCGAT...AAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR CAA 90 bp GTTTGGGTTTTAAACTTCCCTCTGTGGAAGATATTCAAAAGCCACAAGTGGTGCTGGGTAGCCATTTCCTaGGAAGTCACTCCTTCTACA +
Preference number: 5 (lower is better)
Translates to: VWVLNFPLWKIFKSHKWCWVAIS*EVTPST
Trigger: TGTAGAAGGAGTGACTTCCAAGGAAATGGCTACCCA...GCACCACTTGTGGCTTTTGAATATCTTCCACAGAGGGAAGTTTAAAACCCAAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000297268.11
CDS-3UTR CAA 90 bp GGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTGTCCCATTAAGCCCATaGGTCCAGGGCCAAGTCCAA +
Preference number: 5 (lower is better)
Translates to: GVNETVLHNALINPSFSLVPLSP*VQGQVQ
Trigger: TTGGACTTGGCCCTGGACCAATGGGCTTAATGGGAC...AAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR CAA 90 bp AATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTTTGCCCTGTCCCCTAATGCCTTaGAAGCCAGGAAGTCCAGGA +
Preference number: 5 (lower is better)
Translates to: NETVLHNALINPSFSLLPCPLMP*KPGSPG
Trigger: TCCTGGACTTCCTGGCTTCAAAGGCATTAGGGGACA...GGGCAAAAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR CAA 90 bp AATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTTTGCCCCCTTTATCACCGTTTTaGCCAGGATCACCAGTGGGG +
Preference number: 5 (lower is better)
Translates to: NETVLHNALINPSFSLLPPLSPF*PGSPVG
Trigger: CCCCACTGGTGATCCTGGCAAAAACGGTGATAAAGG...GGGCAAAAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR CAA 90 bp AATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTTTGCCCTGGGATGTTTTCAGGTaGGGCCCGGATACAGGTTTC +
Preference number: 5 (lower is better)
Translates to: NETVLHNALINPSFSLLPWDVFR*GPDTGF
Trigger: GAAACCTGTATCCGGGCCCAACCTGAAAACATCCCA...GGGCAAAAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR CAA 90 bp AATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTTTGCCCGCGCATGAAGGCAAGTaGGGTAGCCATTTCCTTGGA +
Preference number: 5 (lower is better)
Translates to: NETVLHNALINPSFSLLPAHEGK*GSHFLG
Trigger: TCCAAGGAAATGGCTACCCAACTTGCCTTCATGCGC...GGGCAAAAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR CAA 90 bp GGGGGAGCGGGGGAAGGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATATTGAGTTCATTTATTaGAAACAGACTGGGCCAATG +
Preference number: 5 (lower is better)
Translates to: GGAGEGVNETVLHNALINIEFIY*KQTGPM
Trigger: CATTGGCCCAGTCTGTTTCAAATAAATGAACTCAAT...ATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCCTTCCCCCGCTCCCCC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR CAA 90 bp GGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTTGTCCCCTAATGCCTTaGAAGCCAGGAAGTCCAGGA +
Preference number: 5 (lower is better)
Translates to: GVNETVLHNALINPSFSLCPLMP*KPGSPG
Trigger: TCCTGGACTTCCTGGCTTCAAAGGCATTAGGGGACA...AAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR CAA 90 bp GGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTCCTTTATCACCGTTTTaGCCAGGATCACCAGTGGGG +
Preference number: 5 (lower is better)
Translates to: GVNETVLHNALINPSFSLPLSPF*PGSPVG
Trigger: CCCCACTGGTGATCCTGGCAAAAACGGTGATAAAGG...AAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR CAA 90 bp GGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTTTCACCTTTTCCACCTaGAACACCCTGTGGTCCAGG +
Preference number: 5 (lower is better)
Translates to: GVNETVLHNALINPSFSLFTFST*NTLWSR
Trigger: CCTGGACCACAGGGTGTTCAAGGTGGAAAAGGTGAA...AAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR CAA 90 bp TTTGGAAGTTTGGGTTTTAAACTTCCCTCTGTGGAAGATATTCAAAAGCCACAATCACCCTTAGGCCCTTaGGCTCCTCTTTCTCCTTTA +
Preference number: 5 (lower is better)
Translates to: FGSLGFKLPSVEDIQKPQSPLGP*APLSPL
Trigger: TAAAGGAGAAAGAGGAGCCAAAGGGCCTAAGGGTGA...TTGTGGCTTTTGAATATCTTCCACAGAGGGAAGTTTAAAACCCAAACTTCCAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000297268.11
CDS-3UTR CAA 90 bp AATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTTTGCCCTCACCCTTAGGCCCTTaGGCTCCTCTTTCTCCTTTA +
Preference number: 5 (lower is better)
Translates to: NETVLHNALINPSFSLLPSPLGP*APLSPL
Trigger: TAAAGGAGAAAGAGGAGCCAAAGGGCCTAAGGGTGA...GGGCAAAAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR CAA 90 bp TTTGGAAGTTTGGGTTTTAAACTTCCCTCTGTGGAAGATATTCAAAAGCCACAAAGCCAGACGTGTTTCTaGTCCTTGGAGCTCCTATAC +
Preference number: 5 (lower is better)
Translates to: FGSLGFKLPSVEDIQKPQSQTCF*SLELLY
Trigger: GTATAGGAGCTCCAAGGACAAGAAACACGTCTGGCT...TTGTGGCTTTTGAATATCTTCCACAGAGGGAAGTTTAAAACCCAAACTTCCAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000297268.11
CDS-3UTR CAA 90 bp GGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTGCGCATGAAGGCAAGTaGGGTAGCCATTTCCTTGGA +
Preference number: 5 (lower is better)
Translates to: GVNETVLHNALINPSFSLAHEGK*GSHFLG
Trigger: TCCAAGGAAATGGCTACCCAACTTGCCTTCATGCGC...AAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR CAA 90 bp AATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTTTGCCCAATCCATCCAGACCATaGTGTCCCCTAATGCCTTTG +
Preference number: 5 (lower is better)
Translates to: NETVLHNALINPSFSLLPNPSRP*CPLMPL
Trigger: CAAAGGCATTAGGGGACACAATGGTCTGGATGGATT...GGGCAAAAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR CAA 90 bp AATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTTTGCCCAGACCTTGCAATCCATaGTGTCCCTTTAAGCCAGGA +
Preference number: 5 (lower is better)
Translates to: NETVLHNALINPSFSLLPRPCNP*CPFKPG
Trigger: TCCTGGCTTAAAGGGACACAATGGATTGCAAGGTCT...GGGCAAAAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR CAA 90 bp GGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTAGCCAGACGTGTTTCTaGTCCTTGGAGCTCCTATAC +
Preference number: 5 (lower is better)
Translates to: GVNETVLHNALINPSFSLSQTCF*SLELLY
Trigger: GTATAGGAGCTCCAAGGACAAGAAACACGTCTGGCT...AAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR CAA 90 bp GGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTAATCCATCCAGACCATaGTGTCCCCTAATGCCTTTG +
Preference number: 5 (lower is better)
Translates to: GVNETVLHNALINPSFSLNPSRP*CPLMPL
Trigger: CAAAGGCATTAGGGGACACAATGGTCTGGATGGATT...AAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR CAA 90 bp GGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTAGACCTTGCAATCCATaGTGTCCCTTTAAGCCAGGA +
Preference number: 5 (lower is better)
Translates to: GVNETVLHNALINPSFSLRPCNP*CPFKPG
Trigger: TCCTGGCTTAAAGGGACACAATGGATTGCAAGGTCT...AAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR CAA 90 bp GGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTACGTGTTTCTTGTCCTaGGAGCTCCTATACCAGTTC +
Preference number: 5 (lower is better)
Translates to: GVNETVLHNALINPSFSLTCFLS*ELLYQF
Trigger: GAACTGGTATAGGAGCTCCAAGGACAAGAAACACGT...AAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR CAA 90 bp GGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTTGGGTAGCCATTTCCTaGGAAGTCACTCCTTCTACA +
Preference number: 5 (lower is better)
Translates to: GVNETVLHNALINPSFSLWVAIS*EVTPST
Trigger: TGTAGAAGGAGTGACTTCCAAGGAAATGGCTACCCA...AAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS-3UTR CAA 90 bp AATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTTTGCCCCGAAAAATTGGCATGTaGCTAGGCATAAGGTTACTG +
Preference number: 5 (lower is better)
Translates to: NETVLHNALINPSFSLLPRKIGM*LGIRLL
Trigger: CAGTAACCTTATGCCTAGCAACATGCCAATTTTTCG...GGGCAAAAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENST00000620463.1
CDS GCA 90 bp GAGTTTCATTCTTCCTACAGGATAAATGATGCCAGCATTTCATATTaGAGAGGAGTAAACGCAATTAGAGATTGTATCATTCCTAAGTGC +
Preference number: 5 (lower is better)
Translates to: EFHSSYRINDASISY*RGVNAIRDCIIPKC
Trigger: GCACTTAGGAATGATACAATCTCTAATTGCGTTTACTCCTCTGCAATATGAAATGCTGGCATCATTTATCCTGTAGGAAGAATGAAACTC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000481570.5
CDS-3UTR CAA 90 bp GGAGTTAATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTGTAAAGATTGGCATGTaGCTAGGCATAAGGTTACTG +
Preference number: 5 (lower is better)
Translates to: GVNETVLHNALINPSFSLVKIGM*LGIRLL
Trigger: CAGTAACCTTATGCCTAGCAACATGCCAATCTTTAC...AAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATTAACTCC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000297268.11
CDS TCA 90 bp AGTGATGACGGTGAGTTTACATCTTGGCATGAATACTTTTGTATCTaGTTCATCCTTGAGACCAATGGCACAACATTTAAAAATATGTGG +
Preference number: 5 (lower is better)
Translates to: SDDGEFTSWHEYFCI*FILETNGTTFKNMW
Trigger: CCACATATTTTTAAATGTTGTGCCATTGGTCTCAAGGATGAATCAGATACAAAAGTATTCATGCCAAGATGTAAACTCACCGTCATCACT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000469732.1
ENST00000481570.5
CDS-3UTR CAA 90 bp AATGAAACTGTATTGCACAATGCTCTGATCAATCCTTCTTTTTCTCTTTTGCCCATTGAGTTCATTTATTaGAAACAGACTGGGCCAATG +
Preference number: 5 (lower is better)
Translates to: NETVLHNALINPSFSLLPIEFIY*KQTGPM
Trigger: CATTGGCCCAGTCTGTTTCAAATAAATGAACTCAAT...GGGCAAAAGAGAAAAAGAAGGATTGATCAGAGCATTGTGCAATACAGTTTCATT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS TCA 90 bp TGGAAGAGAGCAGCAAAGATTCTAGATCTTAAGATGCAAACAATGTaGTGCAATAAAATAATACCCTGGCCATTTGGGGGAAATATTTAT +
Preference number: 5 (lower is better)
Translates to: WKRAAKILDLKMQTM*CNKIIPWPFGGNIY
Trigger: ATAAATATTTCCCCCAAATGGCCAGGGTATTATTTTATTGCATCACATTGTTTGCATCTTAAGATCTAGAATCTTTGCTGCTCTCTTCCA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000481570.5
CDS GCA 72 bp GACCAGCAGGACCCACGGGACCCACACTTCCATCACTaGCACGGGCACCAGCTGGGCCAGGGGCACCAACAC +
Preference number: 6 (lower is better)
Translates to: DQQDPRDPHFHH*HGHQLGQGHQH
Trigger: GTGTTGGTGCCCCTGGCCCAGCTGGTGCCCGTGGCAGTGATGGAAGTGTGGGTCCCGTGGGTCCTGCTGGTC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS CCA 72 bp AGGATTACCAGGAGGTCCAACGGGGCCGGAGAGGCCTaGAAGACCCACTTCACCACGGGGACCGGCGGGACC +
Preference number: 6 (lower is better)
Translates to: RITRRSNGAGEA*KTHFTTGTGGT
Trigger: GGTCCCGCCGGTCCCCGTGGTGAAGTGGGTCTTCCAGGCCTCTCCGGCCCCGTTGGACCTCCTGGTAATCCT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS CCA 72 bp GTTGCCAGGCTCTCCTCTTGCTCCAGCTGGGCCAATTaGGCCAGGCCTGCCGTCGATGCCAGGGAGGCCGAC +
Preference number: 6 (lower is better)
Translates to: VARLSSCSSWAN*ARPAVDAREAD
Trigger: GTCGGCCTCCCTGGCATCGACGGCAGGCCTGGCCCAATTGGCCCAGCTGGAGCAAGAGGAGAGCCTGGCAAC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS CAA 72 bp TGTTGCCAGGCTCTCCTCTTGCTCCAGCTGGGCCAATaGGGCCAGGCCTGCCGTCGATGCCAGGGAGGCCGA +
Preference number: 6 (lower is better)
Translates to: CCQALLLLQLGQ*GQACRRCQGGR
Trigger: TCGGCCTCCCTGGCATCGACGGCAGGCCTGGCCCAATTGGCCCAGCTGGAGCAAGAGGAGAGCCTGGCAACA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS GCA 72 bp GTCACCGGCGGAGGTATCACCTGGCGGGCGCGGGCATaGAGTCGTGGCCAGTACCTCCAACTTAGCCGAAAC +
Preference number: 6 (lower is better)
Translates to: VTGGGITWRARA*SRGQYLQLSRN
Trigger: GTTTCGGCTAAGTTGGAGGTACTGGCCACGACTGCATGCCCGCGCCCGCCAGGTGATACCTCCGCCGGTGAC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS GCA 72 bp CTCCTCTTGCTCCAGCTGGGCCAATTGGGCCAGGCCTaGCGTCGATGCCAGGGAGGCCGACAGGACCTTCTT +
Preference number: 6 (lower is better)
Translates to: LLLLQLGQLGQA*RRCQGGRQDLL
Trigger: AAGAAGGTCCTGTCGGCCTCCCTGGCATCGACGGCAGGCCTGGCCCAATTGGCCCAGCTGGAGCAAGAGGAG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS CCA 72 bp AGGAGGGCCTGTGGGACCATCTTCACCATCTCTGCCTaGGGGGCCTGGTGGACCCCTTTCTCCACGTGGTCC +
Preference number: 6 (lower is better)
Translates to: RRACGTIFTISA*GAWWTPFSTWS
Trigger: GGACCACGTGGAGAAAGGGGTCCACCAGGCCCCCCAGGCAGAGATGGTGAAGATGGTCCCACAGGCCCTCCT
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS CCA 72 bp GCGCTCTCCCTTGTGTCCGGGTTGACCATCGCGACCTaGGGGACCATCGTTCCCAGGGTTGCCATCACGACC +
Preference number: 6 (lower is better)
Translates to: ALSLVSGLTIAT*GTIVPRVAITT
Trigger: GGTCGTGATGGCAACCCTGGGAACGATGGTCCCCCAGGTCGCGATGGTCAACCCGGACACAAGGGAGAGCGC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000297268.11
ENST00000469732.1
ENST00000481570.5
ENST00000620463.1
CDS TCA 72 bp CCTTTCTCCTGGTTTGCCAACTTCACCAGCGGGACCTaGGGGGCCAGGCAGACCCTGGAAGCCTGGAGGACC +
Preference number: 6 (lower is better)
Translates to: PFSWFANFTSGT*GARQTLEAWRT
Trigger: GGTCCTCCAGGCTTCCAGGGTCTGCCTGGCCCCTCAGGTCCCGCTGGTGAAGTTGGCAAACCAGGAGAAAGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000297268.11
ENST00000488298.5
ENST00000620463.1
CDS CCA 72 bp ACGAGAACCAGGACTACCTCTCAGCCCAGGAGGTCCTaGAGGGCCGGCAGATCCAGCTTCCCCATTAGGGCC +
Preference number: 6 (lower is better)
Translates to: TRTRTTSQPRRS*RAGRSSFPIRA
Trigger: GGCCCTAATGGGGAAGCTGGATCTGCCGGCCCTCCAGGACCTCCTGGGCTGAGAGGTAGTCCTGGTTCTCGT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS CCA 72 bp AATAGGACCAGTAGGACCGGCAGCACCACTCTCACCTaGGGGACCGCGTTCCCCTCTTGGACCAGCAGGACC +
Preference number: 6 (lower is better)
Translates to: NRTSRTGSTTLT*GTAFPSWTSRT
Trigger: GGTCCTGCTGGTCCAAGAGGGGAACGCGGTCCCCCAGGTGAGAGTGGTGCTGCCGGTCCTACTGGTCCTATT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000297268.11
ENST00000473573.5
ENST00000488298.5
ENST00000620463.1
CDS CAA 90 bp TGGGGCCCAGCAGAGCCGGGCTCACCCTTGTTACCGCTCTCTCCTTaGGAGCCAGCTGGACCAGGCTCACCAACAAGTCCTCTGGCACCA +
Preference number: 6 (lower is better)
Translates to: WGPAEPGSPLLPLSP*EPAGPGSPTSPLAP
Trigger: TGGTGCCAGAGGACTTGTTGGTGAGCCTGGTCCAGCTGGCTCCAAAGGAGAGAGCGGTAACAAGGGTGAGCCCGGCTCTGCTGGGCCCCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS CAA 90 bp GGAATCCAATGTTGCCAGGCTCTCCTCTTGCTCCAGCTGGGCCAATaGGGCCAGGCCTGCCGTCGATGCCAGGGAGGCCGACAGGACCTT +
Preference number: 6 (lower is better)
Translates to: GIQCCQALLLLQLGQ*GQACRRCQGGRQDL
Trigger: AAGGTCCTGTCGGCCTCCCTGGCATCGACGGCAGGCCTGGCCCAATTGGCCCAGCTGGAGCAAGAGGAGAGCCTGGCAACATTGGATTCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS GCA 72 bp AAGGCCAGCAGCACCCTTGGCACCAGTAAGGCCGTTTaGTCCAGGATTACCAGGAGGTCCAACGGGGCCGGA +
Preference number: 6 (lower is better)
Translates to: KASSTLGTSKAV*SRITRRSNGAG
Trigger: TCCGGCCCCGTTGGACCTCCTGGTAATCCTGGAGCAAACGGCCTTACTGGTGCCAAGGGTGCTGCTGGCCTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS GCA 72 bp ATCTCCATTAGGTCCTCGGACTCCAGCAGGGCCACTTaGACCACGACTACCAGGAGGGCCCATGACGCCAGC +
Preference number: 6 (lower is better)
Translates to: ISIRSSDSSRAT*TTTTRRAHDAS
Trigger: GCTGGCGTCATGGGCCCTCCTGGTAGTCGTGGTGCAAGTGGCCCTGCTGGAGTCCGAGGACCTAATGGAGAT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS CCA 72 bp GAATCCAATGTTGCCAGGCTCTCCTCTTGCTCCAGCTaGGCCAATTGGGCCAGGCCTGCCGTCGATGCCAGG +
Preference number: 6 (lower is better)
Translates to: ESNVARLSSCSS*ANWARPAVDAR
Trigger: CCTGGCATCGACGGCAGGCCTGGCCCAATTGGCCCAGCTGGAGCAAGAGGAGAGCCTGGCAACATTGGATTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS CCA 72 bp CTTGCCTCCAGGTATGCCAGCAGCACCCCTCTCTCCTaGGAGTCCACTAGGACCAGATGGACCAGCAGTGCC +
Preference number: 6 (lower is better)
Translates to: LASRYASSTPLS*ESTRTRWTSSA
Trigger: GGCACTGCTGGTCCATCTGGTCCTAGTGGACTCCCAGGAGAGAGGGGTGCTGCTGGCATACCTGGAGGCAAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000297268.11
ENST00000473573.5
ENST00000497316.5
ENST00000620463.1
CDS CCA 72 bp CAGAGCCGGGCTCACCCTTGTTACCGCTCTCTCCTTTaGAGCCAGCTGGACCAGGCTCACCAACAAGTCCTC +
Preference number: 6 (lower is better)
Translates to: QSRAHPCYRSLL*SQLDQAHQQVL
Trigger: GAGGACTTGTTGGTGAGCCTGGTCCAGCTGGCTCCAAAGGAGAGAGCGGTAACAAGGGTGAGCCCGGCTCTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS CAA 72 bp GCAGAGCCGGGCTCACCCTTGTTACCGCTCTCTCCTTaGGAGCCAGCTGGACCAGGCTCACCAACAAGTCCT +
Preference number: 6 (lower is better)
Translates to: AEPGSPLLPLSP*EPAGPGSPTSP
Trigger: AGGACTTGTTGGTGAGCCTGGTCCAGCTGGCTCCAAAGGAGAGAGCGGTAACAAGGGTGAGCCCGGCTCTGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS CCA 72 bp CTGCTGTGTGGACCACCAGTGAATTCAACTTACAGCTaGGCCAGCAGCTCCAACGGGGCCTGTGGGACCAAC +
Preference number: 6 (lower is better)
Translates to: LLCGPPVNSTYS*ASSSNGACGTN
Trigger: GTTGGTCCCACAGGCCCCGTTGGAGCTGCTGGCCCAGCTGTAAGTTGAATTCACTGGTGGTCCACACAGCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000467931.1
CDS CAA 72 bp AACTGCACCTACTTCTCCAGTTCGGCCAACTGGACCTaGGTCACCACGAGGACCACGAAGCCCTTCTTTCCC +
Preference number: 6 (lower is better)
Translates to: NCTYFSSSANWT*VTTRTTKPFFP
Trigger: GGGAAAGAAGGGCTTCGTGGTCCTCGTGGTGACCAAGGTCCAGTTGGCCGAACTGGAGAAGTAGGTGCAGTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000297268.11
ENST00000481570.5
ENST00000497316.5
ENST00000620463.1
CDS TCA 72 bp CAATCCAGTAGTAACCACTGCTCCACTCTGGGTGGCTaGGTCTCAAGTCACGGCATGTGCGAGCTGGGTTCT +
Preference number: 6 (lower is better)
Translates to: QSSSNHCSTLGG*VSSHGMCELGS
Trigger: AGAACCCAGCTCGCACATGCCGTGACTTGAGACTCAGCCACCCAGAGTGGAGCAGTGGTTACTACTGGATTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000297268.11
ENST00000464916.1
ENST00000481570.5
ENST00000620463.1
CDS GCA 72 bp CACCAGCAAGACCAGCATGACCTTTATCACCGTTTTTaGCAGGATCACCAGTGGGGCCTTTGGGTCCAGGGA +
Preference number: 6 (lower is better)
Translates to: HQQDQHDLYHRF*QDHQWGLWVQG
Trigger: TCCCTGGACCCAAAGGCCCCACTGGTGATCCTGGCAAAAACGGTGATAAAGGTCATGCTGGTCTTGCTGGTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000297268.11
ENST00000620463.1
CDS CAA 90 bp CCTAGCCAGACGTGTTTCTTGTCCTTGGAGCTCCTATACCAGTTCTaGGCTGGGATGTTTTCAGGTTGGGCCCGGATACAGGTTTCGCCA +
Preference number: 6 (lower is better)
Translates to: PSQTCFLSLELLYQF*AGMFSGWARIQVSP
Trigger: TGGCGAAACCTGTATCCGGGCCCAACCTGAAAACATCCCAGCCAAGAACTGGTATAGGAGCTCCAAGGACAAGAAACACGTCTGGCTAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000297268.11
ENST00000464916.1
ENST00000481570.5
ENST00000620463.1
CDS TCA 72 bp ATCAACTTCATAGTCCTTGGGTCTGAGAGAAGGTGCTaGGCGAGGCTGGTCAGCCCTGTAGAAGTCTCCATC +
Preference number: 6 (lower is better)
Translates to: INFIVLGSERRC*ARLVSPVEVSI
Trigger: GATGGAGACTTCTACAGGGCTGACCAGCCTCGCTCAGCACCTTCTCTCAGACCCAAGGACTATGAAGTTGAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000297268.11
ENST00000464916.1
ENST00000481570.5
ENST00000620463.1
CDS CAA 72 bp AGAGGCATAGTTGGCCAGCAGGCGCATGAAGGCAAGTaGGGTAGCCATTTCCTTGGAAGTCACTCCTTCTAC +
Preference number: 6 (lower is better)
Translates to: RGIVGQQAHEGK*GSHFLGSHSFY
Trigger: GTAGAAGGAGTGACTTCCAAGGAAATGGCTACCCAACTTGCCTTCATGCGCCTGCTGGCCAACTATGCCTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000297268.11
ENST00000464916.1
ENST00000481570.5
ENST00000620463.1
CDS CAA 72 bp TTACTTACAGCGATACCAGGCAGACCTTGCAATCCATaGTGTCCCTTTAAGCCAGGAAGACCTCTGGGCCCC +
Preference number: 6 (lower is better)
Translates to: LLTAIPGRPCNP*CPFKPGRPLGP
Trigger: GGGGCCCAGAGGTCTTCCTGGCTTAAAGGGACACAATGGATTGCAAGGTCTGCCTGGTATCGCTGTAAGTAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000478215.1
ENST00000481570.5
CDS CAA 90 bp GGCTACAGTTTACTTACAGCGATACCAGGCAGACCTTGCAATCCATaGTGTCCCTTTAAGCCAGGAAGACCTCTGGGCCCCTTTTCACCG +
Preference number: 6 (lower is better)
Translates to: GYSLLTAIPGRPCNP*CPFKPGRPLGPFSP
Trigger: CGGTGAAAAGGGGCCCAGAGGTCTTCCTGGCTTAAAGGGACACAATGGATTGCAAGGTCTGCCTGGTATCGCTGTAAGTAAACTGTAGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000478215.1
ENST00000481570.5
CDS CCA 72 bp TGGACCCCTTTCTCCACGTGGTCCTCTATCTCCGGCTaGGCCCTTTCTTACAGTTTCGAAAAATTGGCATGT +
Preference number: 6 (lower is better)
Translates to: WTPFSTWSSISG*ALSYSFEKLAC
Trigger: ACATGCCAATTTTTCGAAACTGTAAGAAAGGGCCCAGCCGGAGATAGAGGACCACGTGGAGAAAGGGGTCCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000620463.1
CDS CAA 72 bp GCTCCTATACCAGTTCTTGGCTGGGATGTTTTCAGGTaGGGCCCGGATACAGGTTTCGCCAGTAGAGAAATC +
Preference number: 6 (lower is better)
Translates to: APIPVLGWDVFR*GPDTGFASREI
Trigger: GATTTCTCTACTGGCGAAACCTGTATCCGGGCCCAACCTGAAAACATCCCAGCCAAGAACTGGTATAGGAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000297268.11
ENST00000464916.1
ENST00000481570.5
ENST00000620463.1
CDS CAA 72 bp ACGTGTTTCTTGTCCTTGGAGCTCCTATACCAGTTCTaGGCTGGGATGTTTTCAGGTTGGGCCCGGATACAG +
Preference number: 6 (lower is better)
Translates to: TCFLSLELLYQF*AGMFSGWARIQ
Trigger: CTGTATCCGGGCCCAACCTGAAAACATCCCAGCCAAGAACTGGTATAGGAGCTCCAAGGACAAGAAACACGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000297268.11
ENST00000464916.1
ENST00000481570.5
ENST00000620463.1
CDS CAA 90 bp GTCCTTGGAGCTCCTATACCAGTTCTTGGCTGGGATGTTTTCAGGTaGGGCCCGGATACAGGTTTCGCCAGTAGAGAAATCACAGTATAC +
Preference number: 6 (lower is better)
Translates to: VLGAPIPVLGWDVFR*GPDTGFASREITVY
Trigger: GTATACTGTGATTTCTCTACTGGCGAAACCTGTATCCGGGCCCAACCTGAAAACATCCCAGCCAAGAACTGGTATAGGAGCTCCAAGGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000297268.11
ENST00000464916.1
ENST00000481570.5
ENST00000620463.1
CDS CAA 90 bp GTTCCCTCATTTATTGTCTTCCCGATTTTGTGCTTTCTGAGCATCTaGGAAGCCACAGCCCCTCAGTGTGTGCTGGACAGATTTCCTGGC +
Preference number: 6 (lower is better)
Translates to: VPSFIVFPILCFLSI*EATAPQCVLDRFPG
Trigger: GCCAGGAAATCTGTCCAGCACACACTGAGGGGCTGTGGCTTCCAAGATGCTCAGAAAGCACAAAATCGGGAAGACAATAAATGAGGGAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000481570.5
CDS GCA 72 bp GTGACTGAAGAGATGAGGGTAGTGGGAGTGCACAGCTaGGATTCCTCTATAACCTGCTTCAGTCCTCTTAAG +
Preference number: 6 (lower is better)
Translates to: VTEEMRVVGVHS*DSSITCFSPLK
Trigger: CTTAAGAGGACTGAAGCAGGTTATAGAGGAATCGCAGCTGTGCACTCCCACTACCCTCATCTCTTCAGTCAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000497316.5
CDS CCA 72 bp CTCCTATACCAGTTCTTGGCTGGGATGTTTTCAGGTTaGGCCCGGATACAGGTTTCGCCAGTAGAGAAATCA +
Preference number: 6 (lower is better)
Translates to: LLYQFLAGMFSG*ARIQVSPVEKS
Trigger: TGATTTCTCTACTGGCGAAACCTGTATCCGGGCCCAACCTGAAAACATCCCAGCCAAGAACTGGTATAGGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000297268.11
ENST00000464916.1
ENST00000481570.5
ENST00000620463.1
CDS CCA 72 bp GAGCTGAAGGCCTTCAGGATCAGTTTATGTGCGAGATaGCTACAGTTTACTTACAGCGATACCAGGCAGACC +
Preference number: 6 (lower is better)
Translates to: ELKAFRISLCAR*LQFTYSDTRQT
Trigger: GGTCTGCCTGGTATCGCTGTAAGTAAACTGTAGCCATCTCGCACATAAACTGATCCTGAAGGCCTTCAGCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000478215.1
ENST00000481570.5
CDS TCA 72 bp TTCCCTCATTTATTGTCTTCCCGATTTTGTGCTTTCTaGGCATCTTGGAAGCCACAGCCCCTCAGTGTGTGC +
Preference number: 6 (lower is better)
Translates to: FPHLLSSRFCAF*ASWKPQPLSVC
Trigger: GCACACACTGAGGGGCTGTGGCTTCCAAGATGCTCAGAAAGCACAAAATCGGGAAGACAATAAATGAGGGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000481570.5
CDS GCA 72 bp GGCTACAGTTTACTTACAGCGATACCAGGCAGACCTTaGAATCCATTGTGTCCCTTTAAGCCAGGAAGACCT +
Preference number: 6 (lower is better)
Translates to: GYSLLTAIPGRP*NPLCPFKPGRP
Trigger: AGGTCTTCCTGGCTTAAAGGGACACAATGGATTGCAAGGTCTGCCTGGTATCGCTGTAAGTAAACTGTAGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000478215.1
ENST00000481570.5
CDS CAA 72 bp GCAGTGCCCACAGCACCAACCACACCAGGTTCACCCTaGAGTCAAACACATGTGAAATCAATTTTAGTGGAG +
Preference number: 6 (lower is better)
Translates to: AVPTAPTTPGSP*SQTHVKSILVE
Trigger: CTCCACTAAAATTGATTTCACATGTGTTTGACTCAAGGGTGAACCTGGTGTGGTTGGTGCTGTGGGCACTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000497316.5
CDS CAA 90 bp CGGCTGGGCCCTTTCTTACAGTTTCCTCTTGTAAAGATTGGCATGTaGCTAGGCATAAGGTTACTGCAAGCAGCAACAAAGTCCGCGTAT +
Preference number: 6 (lower is better)
Translates to: RLGPFLQFPLVKIGM*LGIRLLQAATKSAY
Trigger: ATACGCGGACTTTGTTGCTGCTTGCAGTAACCTTATGCCTAGCAACATGCCAATCTTTACAAGAGGAAACTGTAAGAAAGGGCCCAGCCG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000297268.11
CDS CAA 90 bp GATGTTCTGAGAGGCATAGTTGGCCAGCAGGCGCATGAAGGCAAGTaGGGTAGCCATTTCCTTGGAAGTCACTCCTTCTACATTATATTC +
Preference number: 6 (lower is better)
Translates to: DVLRGIVGQQAHEGK*GSHFLGSHSFYIIF
Trigger: GAATATAATGTAGAAGGAGTGACTTCCAAGGAAATGGCTACCCAACTTGCCTTCATGCGCCTGCTGGCCAACTATGCCTCTCAGAACATC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000297268.11
ENST00000464916.1
ENST00000481570.5
ENST00000620463.1
CDS CAA 90 bp TATCTCCGGCTGGGCCCTTTCTTACAGTTTCGAAAAATTGGCATGTaGCTAGGCATAAGGTTACTGCAAGCAGCAACAAAGTCCGCGTAT +
Preference number: 6 (lower is better)
Translates to: YLRLGPFLQFRKIGM*LGIRLLQAATKSAY
Trigger: ATACGCGGACTTTGTTGCTGCTTGCAGTAACCTTATGCCTAGCAACATGCCAATTTTTCGAAACTGTAAGAAAGGGCCCAGCCGGAGATA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000620463.1
CDS CCA 72 bp GCTGGGCCCTTTCTTACAGTTTCCTCTTGTAAAGATTaGCATGTTGCTAGGCATAAGGTTACTGCAAGCAGC +
Preference number: 6 (lower is better)
Translates to: AGPFLTVSSCKD*HVARHKVTASS
Trigger: GCTGCTTGCAGTAACCTTATGCCTAGCAACATGCCAATCTTTACAAGAGGAAACTGTAAGAAAGGGCCCAGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000297268.11
CDS CAA 72 bp GTGCTGGACAGATTTCCTGGCTCAACTGAGCTCTACTaGAGAGCCTGCAATACTCATCAACAAATAGATGCC +
Preference number: 6 (lower is better)
Translates to: VLDRFPGSTELY*RACNTHQQIDA
Trigger: GGCATCTATTTGTTGATGAGTATTGCAGGCTCTCAAGTAGAGCTCAGTTGAGCCAGGAAATCTGTCCAGCAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000481570.5
CDS TCA 72 bp TTTAAACAGCTAGCTAGACAGGCTTCTTGCCTGCTTTaGAACACAAAGAAGGCTGGGCTATTGAAAGGAGGG +
Preference number: 6 (lower is better)
Translates to: FKQLARQASCLL*NTKKAGLLKGG
Trigger: CCCTCCTTTCAATAGCCCAGCCTTCTTTGTGTTTCAAAGCAGGCAAGAAGCCTGTCTAGCTAGCTGTTTAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000497316.5
CDS CCA 72 bp TTAGTATCATCTCTGCCCTCCTTCTCCACATGTAGATaGCCAGCTTTATGTAATCACGGGATGTTGCTCTGT +
Preference number: 6 (lower is better)
Translates to: LVSSLPSFSTCR*PALCNHGMLLC
Trigger: ACAGAGCAACATCCCGTGATTACATAAAGCTGGCCATCTACATGTGGAGAAGGAGGGCAGAGATGATACTAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000481570.5
CDS CCA 72 bp ACAGGCTTCTTGCCTGCTTTGAAACACAAAGAAGGCTaGGCTATTGAAAGGAGGGAGAATATAGCAGAGAGA +
Preference number: 6 (lower is better)
Translates to: TGFLPALKHKEG*AIERRENIAER
Trigger: TCTCTCTGCTATATTCTCCCTCCTTTCAATAGCCCAGCCTTCTTTGTGTTTCAAAGCAGGCAAGAAGCCTGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000497316.5
CDS TCA 72 bp TACTTACAGAGCAGCCATCTACAAGAACAGTGTAAGTaGACCTGCTGTTGCCCTCAGCAACAAGTTCAACAT +
Preference number: 6 (lower is better)
Translates to: YLQSSHLQEQCK*TCCCPQQQVQH
Trigger: ATGTTGAACTTGTTGCTGAGGGCAACAGCAGGTTCACTTACACTGTTCTTGTAGATGGCTGCTCTGTAAGTA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000481570.5
CDS CAA 72 bp CTGGGCCCTTTCTTACAGTTTCGAAAAATTGGCATGTaGCTAGGCATAAGGTTACTGCAAGCAGCAACAAAG +
Preference number: 6 (lower is better)
Translates to: LGPFLQFRKIGM*LGIRLLQAATK
Trigger: CTTTGTTGCTGCTTGCAGTAACCTTATGCCTAGCAACATGCCAATTTTTCGAAACTGTAAGAAAGGGCCCAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000620463.1
CDS CCA 72 bp TTTCTAGAGCCTTCAGGAGTAAGAAGGGTCTCAATCTaGTTGTTGAGAGACTTCAGAGTAGCATCAACTTCA +
Preference number: 6 (lower is better)
Translates to: FLEPSGVRRVSI*LLRDFRVASTS
Trigger: TGAAGTTGATGCTACTCTGAAGTCTCTCAACAACCAGATTGAGACCCTTCTTACTCCTGAAGGCTCTAGAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000297268.11
ENST00000464916.1
ENST00000481570.5
ENST00000620463.1
CDS CAA 72 bp TTTCCGACTTTACAATTAAACTGCCTAGGGCCCACCTaGGTTATTACCTCAAGTGAGCTGATAGCAACATAC +
Preference number: 6 (lower is better)
Translates to: FPTLQLNCLGPT*VITSSELIATY
Trigger: GTATGTTGCTATCAGCTCACTTGAGGTAATAACCAAGGTGGGCCCTAGGCAGTTTAATTGTAAAGTCGGAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000461525.5
CDS TCA 72 bp TTTCTTGCAGAAAGAAGCAACTCCTGTCTTCCTTTATaGGGCTGTAACCAACCAAATAATGGAGGAGAGACT +
Preference number: 6 (lower is better)
Translates to: FLAERSNSCLPL*GCNQPNNGGET
Trigger: AGTCTCTCCTCCATTATTTGGTTGGTTACAGCCTCATAAAGGAAGACAGGAGTTGCTTCTTTCTGCAAGAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000481570.5
CDS CAA 90 bp CTAGGTGTAGATACTATGGAGAAGCTGACCATCTTGTTCAGAAATTaGGAAGAAGAGAACCTCAGCTCAGGACATAAAGTTTCACACAAT +
Preference number: 6 (lower is better)
Translates to: LGVDTMEKLTILFRN*EEENLSSGHKVSHN
Trigger: ATTGTGTGAAACTTTATGTCCTGAGCTGAGGTTCTCTTCTTCCAAATTTCTGAACAAGATGGTCAGCTTCTCCATAGTATCTACACCTAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000478215.1
CDS CCA 72 bp GAGGCTGTAACCAACCAAATAATGGAGGAGAGACTATaGCAAATTTCTATGAGGAAAAACAATGTCATGCCA +
Preference number: 6 (lower is better)
Translates to: EAVTNQIMEERL*QISMRKNNVMP
Trigger: TGGCATGACATTGTTTTTCCTCATAGAAATTTGCCATAGTCTCTCCTCCATTATTTGGTTGGTTACAGCCTC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000481570.5
CDS CAA 72 bp AGTTTCTTACCAGTTTCCTATCAGAAGCCAGGCCTTTaGGCTAGAGTAAATGAAGACACGTTTACAGTGATT +
Preference number: 6 (lower is better)
Translates to: SFLPVSYQKPGL*ARVNEDTFTVI
Trigger: AATCACTGTAAACGTGTCTTCATTTACTCTAGCCAAAAGGCCTGGCTTCTGATAGGAAACTGGTAAGAAACT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000473573.5
CDS CAA 90 bp TTCATGAAGAGTTTCTTACCAGTTTCCTATCAGAAGCCAGGCCTTTaGGCTAGAGTAAATGAAGACACGTTTACAGTGATTTACTTACAG +
Preference number: 6 (lower is better)
Translates to: FMKSFLPVSYQKPGL*ARVNEDTFTVIYLQ
Trigger: CTGTAAGTAAATCACTGTAAACGTGTCTTCATTTACTCTAGCCAAAAGGCCTGGCTTCTGATAGGAAACTGGTAAGAAACTCTTCATGAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000473573.5
CDS CAA 90 bp TTGGGAACTCTGAATTTTCCCCCACAGTTTGTTGCTATTGTTTGTTaGTTTAGAATAATTCAGGTCCACTGGAATCGGATTGCTGTTTAC +
Preference number: 6 (lower is better)
Translates to: LGTLNFPPQFVAIVC*FRIIQVHWNRIAVY
Trigger: GTAAACAGCAATCCGATTCCAGTGGACCTGAATTATTCTAAACAAACAAACAATAGCAACAAACTGTGGGGGAAAATTCAGAGTTCCCAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000488298.5
CDS TCA 72 bp GCAGCAAAGATTCTAGATCTTAAGATGCAAACAATGTaGTGCAATAAAATAATACCCTGGCCATTTGGGGGA +
Preference number: 6 (lower is better)
Translates to: AAKILDLKMQTM*CNKIIPWPFGG
Trigger: TCCCCCAAATGGCCAGGGTATTATTTTATTGCATCACATTGTTTGCATCTTAAGATCTAGAATCTTTGCTGC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000481570.5
CDS CAA 90 bp ATATTTTCAGTACTAGGTGTAGATACTATGGAGAAGCTGACCATCTaGTTCAGAAATTTGGAAGAAGAGAACCTCAGCTCAGGACATAAA +
Preference number: 6 (lower is better)
Translates to: IFSVLGVDTMEKLTI*FRNLEEENLSSGHK
Trigger: TTTATGTCCTGAGCTGAGGTTCTCTTCTTCCAAATTTCTGAACAAGATGGTCAGCTTCTCCATAGTATCTACACCTAGTACTGAAAATAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000478215.1
CDS TCA 72 bp GGTGAGTTTACATCTTGGCATGAATACTTTTGTATCTaGTTCATCCTTGAGACCAATGGCACAACATTTAAA +
Preference number: 6 (lower is better)
Translates to: GEFTSWHEYFCI*FILETNGTTFK
Trigger: TTTAAATGTTGTGCCATTGGTCTCAAGGATGAATCAGATACAAAAGTATTCATGCCAAGATGTAAACTCACC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000469732.1
ENST00000481570.5
CDS CCA 72 bp AAACAAACCCTTGTAAATGCTACTCTTTTCTTCAAGTaGATCATTCCCGCATCTCTTAGAAGAAAATATAGA +
Preference number: 6 (lower is better)
Translates to: KQTLVNATLFFK*IIPASLRRKYR
Trigger: TCTATATTTTCTTCTAAGAGATGCGGGAATGATCCACTTGAAGAAAAGAGTAGCATTTACAAGGGTTTGTTT
35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000467931.1