RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CNTNAP3B (Homo sapiens)

Ensembl gene IDs: ENSG00000154529

Ensembl transcript IDs: ENST00000276974.7, ENST00000377561.7, ENST00000612828.4

Found 26 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GTCACTTGCGACAGCATGGATGGAACTGGAGGTCATTATGTTAAGTaGAATAGGCCAGGCATAGAAAGACAAACATTGCCATGTTCTCAT +
Preference number: 1 (lower is better)
Translates to: VTCDSMDGTGGHYVK*NRPGIERQTLPCSH
Trigger: ATGAGAACATGGCAATGTTTGTCTTTCTATGCCTGGCCTATTTCACTTAACATAATGACCTCCAGTTCCATCCATGCTGTCGCAAGTGAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000612828.4
3UTR-3UTR TCA 90 bp GGGCTCTTAAAATCCAGATACAGACCATTTAAAATCCCGATCTCTGGAGGTGGAGGTAAAGGTATCTTTTaGATCTCCTCTGGTGACTCC +
Preference number: 2 (lower is better)
Translates to: GLLKSRYRPFKIPISGGGGKGIF*ISSGDS
Trigger: GGAGTCACCAGAGGAGATTCAAAAGATACCTTTACC...TCCACCTCCAGAGATCGGGATTTTAAATGGTCTGTATCTGGATTTTAAGAGCCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000276974.7
3UTR TCA 72 bp ATACAAAATGGAGTACTCTTCAGCCATAAAAGAGAATaGGATCCTGTCACTTGCGACAGCATGGATGGAACT +
Preference number: 3 (lower is better)
Translates to: IQNGVLFSHKRE*DPVTCDSMDGT
Trigger: AGTTCCATCCATGCTGTCGCAAGTGACAGGATCTCATTCTCTTTTATGGCTGAAGAGTACTCCATTTTGTAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000612828.4
CDS-3UTR TCA 90 bp ATGATGTGCTTATTTCACAGTGCATGCCTGTATCAAAACATTTCATGTACTCCATGGGGTTCCATCTCGTaGGTCCGGGCGCCGCGCTGT +
Preference number: 4 (lower is better)
Translates to: MMCLFHSACLYQNISCTPWGSIS*VRAPRC
Trigger: ACAGCGCGGCGCCCGGACTCACGAGATGGAACCCCA...TGGAGTACATGAAATGTTTTGATACAGGCATGCACTGTGAAATAAGCACATCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000377561.7
ENST00000612828.4
CDS-3UTR CCA 90 bp GGGCTCTTAAAATCCAGATACAGACCATTTAAAATCCCGATCTCTGGAGGTGGAGGAATCACAGTCAGGTaGATTTCCTGCTCCTACGGG +
Preference number: 4 (lower is better)
Translates to: GLLKSRYRPFKIPISGGGGITVR*ISCSYG
Trigger: CCCGTAGGAGCAGGAAATCCACCTGACTGTGATTCC...TCCACCTCCAGAGATCGGGATTTTAAATGGTCTGTATCTGGATTTTAAGAGCCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000276974.7
CDS-3UTR CCA 90 bp GGGCTCTTAAAATCCAGATACAGACCATTTAAAATCCCGATCTCTGGAGGTGGACCCGATCTCTGGAGGTaGAGCCAGGTAAAGGTATCT +
Preference number: 4 (lower is better)
Translates to: GLLKSRYRPFKIPISGGGPDLWR*SQVKVS
Trigger: AGATACCTTTACCTGGCTCCACCTCCAGAGATCGGG...TCCACCTCCAGAGATCGGGATTTTAAATGGTCTGTATCTGGATTTTAAGAGCCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000276974.7
CDS-3UTR CCA 90 bp ATGATGTGCTTATTTCACAGTGCATGCCTGTATCAAAACATTTCATGTACTCCAGGAATCACAGTCAGGTaGATTTCCTGCTCCTACGGG +
Preference number: 4 (lower is better)
Translates to: MMCLFHSACLYQNISCTPGITVR*ISCSYG
Trigger: CCCGTAGGAGCAGGAAATCCACCTGACTGTGATTCC...TGGAGTACATGAAATGTTTTGATACAGGCATGCACTGTGAAATAAGCACATCAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000377561.7
ENST00000612828.4
CDS-3UTR TCA 90 bp ATGATGTGCTTATTTCACAGTGCATGCCTGTATCAAAACATTTCATGTACTCCAAAAGTAGTAGACAGCTaGGATAATGGTGGGGCAGAG +
Preference number: 4 (lower is better)
Translates to: MMCLFHSACLYQNISCTPKVVDS*DNGGAE
Trigger: CTCTGCCCCACCATTATCTCAGCTGTCTACTACTTT...TGGAGTACATGAAATGTTTTGATACAGGCATGCACTGTGAAATAAGCACATCAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000377561.7
ENST00000612828.4
CDS-3UTR CCA 90 bp GTGCATGCCTGTATCAAAACATTTCATGTACTCCATAAATATATGCACCTAGTAAAAATGTCACTTCTGTaGGAGCCCGCAGCTCAATCC +
Preference number: 4 (lower is better)
Translates to: VHACIKTFHVLHKYMHLVKMSLL*EPAAQS
Trigger: GGATTGAGCTGCGGGCTCCCACAGAAGTGACATTTT...TACTAGGTGCATATATTTATGGAGTACATGAAATGTTTTGATACAGGCATGCAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000377561.7
ENST00000612828.4
CDS-3UTR TCA 90 bp GTGCATGCCTGTATCAAAACATTTCATGTACTCCATAAATATATGCACCTAGTAAAAGTAGTAGACAGCTaGGATAATGGTGGGGCAGAG +
Preference number: 4 (lower is better)
Translates to: VHACIKTFHVLHKYMHLVKVVDS*DNGGAE
Trigger: CTCTGCCCCACCATTATCTCAGCTGTCTACTACTTT...TACTAGGTGCATATATTTATGGAGTACATGAAATGTTTTGATACAGGCATGCAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000377561.7
ENST00000612828.4
CDS-3UTR CCA 90 bp ATGATGTGCTTATTTCACAGTGCATGCCTGTATCAAAACATTTCATGTACTCCATGTTTCTTTGCGCTCTaGTTAACCTCTACCATGACC +
Preference number: 4 (lower is better)
Translates to: MMCLFHSACLYQNISCTPCFFAL*LTSTMT
Trigger: GGTCATGGTAGAGGTTAACCAGAGCGCAAAGAAACA...TGGAGTACATGAAATGTTTTGATACAGGCATGCACTGTGAAATAAGCACATCAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000377561.7
ENST00000612828.4
CDS-3UTR GCA 90 bp ATGATGTGCTTATTTCACAGTGCATGCCTGTATCAAAACATTTCATGTACTCCACCATTCTCCATGATGTaGTTATTTCACAGTGCATGC +
Preference number: 4 (lower is better)
Translates to: MMCLFHSACLYQNISCTPPFSMM*LFHSAC
Trigger: GCATGCACTGTGAAATAAGCACATCATGGAGAATGG...TGGAGTACATGAAATGTTTTGATACAGGCATGCACTGTGAAATAAGCACATCAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000377561.7
ENST00000612828.4
CDS-3UTR CCA 90 bp GTGCATGCCTGTATCAAAACATTTCATGTACTCCATAAATATATGCACCTAGTAATGCGGAAATCTCATTaGAGCAGAACGGTCCATCAT +
Preference number: 4 (lower is better)
Translates to: VHACIKTFHVLHKYMHLVMRKSH*SRTVHH
Trigger: ATGATGGACCGTTCTGCTCCAATGAGATTTCCGCAT...TACTAGGTGCATATATTTATGGAGTACATGAAATGTTTTGATACAGGCATGCAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000377561.7
CDS-3UTR CCA 90 bp GTGCATGCCTGTATCAAAACATTTCATGTACTCCATAAATATATGCACCTAGTATGTTTCTTTGCGCTCTaGTTAACCTCTACCATGACC +
Preference number: 4 (lower is better)
Translates to: VHACIKTFHVLHKYMHLVCFFAL*LTSTMT
Trigger: GGTCATGGTAGAGGTTAACCAGAGCGCAAAGAAACA...TACTAGGTGCATATATTTATGGAGTACATGAAATGTTTTGATACAGGCATGCAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000377561.7
ENST00000612828.4
CDS-3UTR CCA 90 bp GTGCATGCCTGTATCAAAACATTTCATGTACTCCATAAATATATGCACCTAGTATTGCGACAGCATGGATaGAACTGGAGGTCATTATGT +
Preference number: 4 (lower is better)
Translates to: VHACIKTFHVLHKYMHLVLRQHG*NWRSLC
Trigger: ACATAATGACCTCCAGTTCCATCCATGCTGTCGCAA...TACTAGGTGCATATATTTATGGAGTACATGAAATGTTTTGATACAGGCATGCAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000612828.4
CDS-3UTR TCA 90 bp GTGCATGCCTGTATCAAAACATTTCATGTACTCCATAAATATATGCACCTAGTAACAAAGGATAAATGTTaGGGGGATGGATACCCCATT +
Preference number: 4 (lower is better)
Translates to: VHACIKTFHVLHKYMHLVTKDKC*GDGYPI
Trigger: AATGGGGTATCCATCCCCTCAACATTTATCCTTTGT...TACTAGGTGCATATATTTATGGAGTACATGAAATGTTTTGATACAGGCATGCAC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000377561.7
ENST00000612828.4
CDS-3UTR GCA 90 bp GTGCATGCCTGTATCAAAACATTTCATGTACTCCATAAATATATGCACCTAGTACCATTCTCCATGATGTaGTTATTTCACAGTGCATGC +
Preference number: 4 (lower is better)
Translates to: VHACIKTFHVLHKYMHLVPFSMM*LFHSAC
Trigger: GCATGCACTGTGAAATAAGCACATCATGGAGAATGG...TACTAGGTGCATATATTTATGGAGTACATGAAATGTTTTGATACAGGCATGCAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000377561.7
ENST00000612828.4
CDS-3UTR TCA 90 bp GTGCATGCCTGTATCAAAACATTTCATGTACTCCATAAATATATGCACCTAGTAGGTCATTATGTTAAGTaGAATAGGCCAGGCATAGAA +
Preference number: 4 (lower is better)
Translates to: VHACIKTFHVLHKYMHLVGHYVK*NRPGIE
Trigger: TTCTATGCCTGGCCTATTTCACTTAACATAATGACC...TACTAGGTGCATATATTTATGGAGTACATGAAATGTTTTGATACAGGCATGCAC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000612828.4
CDS-3UTR TCA 90 bp ATGATGTGCTTATTTCACAGTGCATGCCTGTATCAAAACATTTCATGTACTCCAGTGTTCATCAACAGATaGATGAAGAAAATGTGGTTC +
Preference number: 4 (lower is better)
Translates to: MMCLFHSACLYQNISCTPVFINR*MKKMWF
Trigger: GAACCACATTTTCTTCATTCATCTGTTGATGAACAC...TGGAGTACATGAAATGTTTTGATACAGGCATGCACTGTGAAATAAGCACATCAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000612828.4
CDS-3UTR GCA 90 bp GTGCATGCCTGTATCAAAACATTTCATGTACTCCATAAATATATGCACCTAGTAGTGCTTATTTCACAGTaGATGCCTGTATCAAAACAT +
Preference number: 4 (lower is better)
Translates to: VHACIKTFHVLHKYMHLVVLISQ*MPVSKH
Trigger: ATGTTTTGATACAGGCATGCACTGTGAAATAAGCAC...TACTAGGTGCATATATTTATGGAGTACATGAAATGTTTTGATACAGGCATGCAC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000377561.7
ENST00000612828.4
CDS-3UTR CCA 90 bp ATGATGTGCTTATTTCACAGTGCATGCCTGTATCAAAACATTTCATGTACTCCAATAACAGCTAAGATTTaGAAACACCCTAAGTGTTCA +
Preference number: 4 (lower is better)
Translates to: MMCLFHSACLYQNISCTPITAKI*KHPKCS
Trigger: TGAACACTTAGGGTGTTTCCAAATCTTAGCTGTTAT...TGGAGTACATGAAATGTTTTGATACAGGCATGCACTGTGAAATAAGCACATCAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000612828.4
CDS-3UTR CAA 90 bp GTGCATGCCTGTATCAAAACATTTCATGTACTCCATAAATATATGCACCTAGTATATGCGGAAATCTCATaGGAGCAGAACGGTCCATCA +
Preference number: 5 (lower is better)
Translates to: VHACIKTFHVLHKYMHLVYAEIS*EQNGPS
Trigger: TGATGGACCGTTCTGCTCCAATGAGATTTCCGCATA...TACTAGGTGCATATATTTATGGAGTACATGAAATGTTTTGATACAGGCATGCAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000377561.7
CDS-3UTR CAA 90 bp ATGATGTGCTTATTTCACAGTGCATGCCTGTATCAAAACATTTCATGTACTCCAATCTGCAAACTTCCATaGTTGGCGAGGATAACTGAA +
Preference number: 5 (lower is better)
Translates to: MMCLFHSACLYQNISCTPICKLP*LARITE
Trigger: TTCAGTTATCCTCGCCAACAATGGAAGTTTGCAGAT...TGGAGTACATGAAATGTTTTGATACAGGCATGCACTGTGAAATAAGCACATCAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000377561.7
ENST00000612828.4
CDS-3UTR CAA 90 bp GTGCATGCCTGTATCAAAACATTTCATGTACTCCATAAATATATGCACCTAGTAATCTGCAAACTTCCATaGTTGGCGAGGATAACTGAA +
Preference number: 5 (lower is better)
Translates to: VHACIKTFHVLHKYMHLVICKLP*LARITE
Trigger: TTCAGTTATCCTCGCCAACAATGGAAGTTTGCAGAT...TACTAGGTGCATATATTTATGGAGTACATGAAATGTTTTGATACAGGCATGCAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000377561.7
ENST00000612828.4
CDS-3UTR CAA 90 bp ATGATGTGCTTATTTCACAGTGCATGCCTGTATCAAAACATTTCATGTACTCCACAGAGTGTAATCAGGTaGTTTGTAACACAAAGGATA +
Preference number: 5 (lower is better)
Translates to: MMCLFHSACLYQNISCTPQSVIR*FVTQRI
Trigger: TATCCTTTGTGTTACAAACAACCTGATTACACTCTG...TGGAGTACATGAAATGTTTTGATACAGGCATGCACTGTGAAATAAGCACATCAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000377561.7
ENST00000612828.4
CDS-3UTR CAA 90 bp GTGCATGCCTGTATCAAAACATTTCATGTACTCCATAAATATATGCACCTAGTACAGAGTGTAATCAGGTaGTTTGTAACACAAAGGATA +
Preference number: 5 (lower is better)
Translates to: VHACIKTFHVLHKYMHLVQSVIR*FVTQRI
Trigger: TATCCTTTGTGTTACAAACAACCTGATTACACTCTG...TACTAGGTGCATATATTTATGGAGTACATGAAATGTTTTGATACAGGCATGCAC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000377561.7
ENST00000612828.4