RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CMC2 (Homo sapiens)

Ensembl gene IDs: ENSG00000103121

Ensembl transcript IDs: ENST00000219400.8, ENST00000486645.5, ENST00000561614.5, ENST00000562713.3, ENST00000562828.5, ENST00000563779.5, ENST00000564174.5, ENST00000564249.5, ENST00000565108.5, ENST00000565613.5, ENST00000565650.5, ENST00000565914.5, ENST00000565925.5, ENST00000566047.5, ENST00000566918.5, ENST00000567593.5, ENST00000568228.5, ENST00000569187.5, ENST00000569666.5, ENST00000570086.5, ENST00000570195.5, ENST00000630396.1

Found 359 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp TGCAAGTTCCCTGAGGTGATGTCCAAGGCCTGTGTGTTCTGGCCCTaGCCACCTGTGTCCTCAGCTCATGCCACCCTCCCCCTTGCTCAC +
Preference number: 1 (lower is better)
Translates to: CKFPEVMSKACVFWP*PPVSSAHATLPLAH
Trigger: GTGAGCAAGGGGGAGGGTGGCATGAGCTGAGGACACAGGTGGGCAGGGCCAGAACACACAGGCCTTGGACATCACCTCAGGGAACTTGCA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR CCA 90 bp CAAATGAGTGAGGTGAGGACAGAGCATCAAGAGCCAGAGGAGTCCTaGGAGGTCTCAGCATCGATGTGGAAAGCAGCACAGGGAGGCACA +
Preference number: 1 (lower is better)
Translates to: QMSEVRTEHQEPEES*EVSASMWKAAQGGT
Trigger: TGTGCCTCCCTGTGCTGCTTTCCACATCGATGCTGAGACCTCCCAGGACTCCTCTGGCTCTTGATGCTCTGTCCTCACCTCACTCATTTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR TCA 90 bp CCCTCCCTACTGTCAGTCTTGTTCTCCATCTCCTGTCCTCCCATGTaGCCAGCTGCCGGTGAGATCAGACTAGAGCTTAGAGGACAGAAA +
Preference number: 1 (lower is better)
Translates to: PSLLSVLFSISCPPM*PAAGEIRLELRGQK
Trigger: TTTCTGTCCTCTAAGCTCTAGTCTGATCTCACCGGCAGCTGGTCACATGGGAGGACAGGAGATGGAGAACAAGACTGACAGTAGGGAGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR CCA 90 bp GGGCACGGGAAGAACAGTCCTATACTCAGCAGAGAGGAGACACACTaGCCTAAGGTTAATGTCCAGGAGTTAACTGGCACCTCGAGTGGA +
Preference number: 1 (lower is better)
Translates to: GHGKNSPILSREETH*PKVNVQELTGTSSG
Trigger: TCCACTCGAGGTGCCAGTTAACTCCTGGACATTAACCTTAGGCCAGTGTGTCTCCTCTCTGCTGAGTATAGGACTGTTCTTCCCGTGCCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR TCA 90 bp ACTGCGGCTACAGTTGCAGGCTCTATAACCCCACCATTTCTGCTCTaGTCCATACCAGAAAATGGATGCTTCATGGACCGTCTCTCTCTC +
Preference number: 1 (lower is better)
Translates to: TAATVAGSITPPFLL*SIPENGCFMDRLSL
Trigger: GAGAGAGAGACGGTCCATGAAGCATCCATTTTCTGGTATGGATCAGAGCAGAAATGGTGGGGTTATAGAGCCTGCAACTGTAGCCGCAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR TCA 90 bp GGAAAGCCAGACTCCCTAAGAGGACACAGATGGTCCTTCGTGATGTaGACCGTCACTAGAACCACATCCATCTTATTCCATGGTATCACC +
Preference number: 1 (lower is better)
Translates to: GKPDSLRGHRWSFVM*TVTRTTSILFHGIT
Trigger: GGTGATACCATGGAATAAGATGGATGTGGTTCTAGTGACGGTTCACATCACGAAGGACCATCTGTGTCCTCTTAGGGAGTCTGGCTTTCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR CCA 90 bp CTGCTCTTATGGTCAGCTACTGACATTGGCCTACAGGGCCTTAGCTaGCATCTGCATGCTGACATCTCCCAATTTTGTTCTAATCCAGGT +
Preference number: 1 (lower is better)
Translates to: LLLWSATDIGLQGLS*HLHADISQFCSNPG
Trigger: ACCTGGATTAGAACAAAATTGGGAGATGTCAGCATGCAGATGCCAGCTAAGGCCCTGTAGGCCAATGTCAGTAGCTGACCATAAGAGCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR CCA 90 bp AGAACAGCAATTGGTACTGGGAAGGTTCTTGCCCACTTCAGTAAATaGGGCCCACAGGAAGGTCTGAAGGGGCTGGAACAATTTAGCATT +
Preference number: 1 (lower is better)
Translates to: RTAIGTGKVLAHFSK*GPQEGLKGLEQFSI
Trigger: AATGCTAAATTGTTCCAGCCCCTTCAGACCTTCCTGTGGGCCCCATTTACTGAAGTGGGCAAGAACCTTCCCAGTACCAATTGCTGTTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR TCA 90 bp TGTCACAGGTCTCAGAAACACTTGGCAGAAGGAACACTGGTGAAATaGCTGCTAGAATTGGGCACGGGAAGAACAGTCCTATACTCAGCA +
Preference number: 1 (lower is better)
Translates to: CHRSQKHLAEGTLVK*LLELGTGRTVLYSA
Trigger: TGCTGAGTATAGGACTGTTCTTCCCGTGCCCAATTCTAGCAGTCATTTCACCAGTGTTCCTTCTGCCAAGTGTTTCTGAGACCTGTGACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR TCA 90 bp TTTCTAATGGTTTTCCATTATGCTCCAAATAACATGCAAGTTCCCTaGGGTGATGTCCAAGGCCTGTGTGTTCTGGCCCTGCCCACCTGT +
Preference number: 1 (lower is better)
Translates to: FLMVFHYAPNNMQVP*GDVQGLCVLALPTC
Trigger: ACAGGTGGGCAGGGCCAGAACACACAGGCCTTGGACATCACCTCAGGGAACTTGCATGTTATTTGGAGCATAATGGAAAACCATTAGAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR TCA 90 bp AGGAAAAAGTGCGCTTGCTCTAGACAGGAGAAACAGATTTCACTCTaGTCTACAGCAGGCTGGGGAAAGTCAGCAAGGCTGATGAGATGT +
Preference number: 1 (lower is better)
Translates to: RKKCACSRQEKQISL*STAGWGKSARLMRC
Trigger: ACATCTCATCAGCCTTGCTGACTTTCCCCAGCCTGCTGTAGATCAGAGTGAAATCTGTTTCTCCTGTCTAGAGCAAGCGCACTTTTTCCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR TCA 90 bp GGACCACAGTCTAATGGCCCAAATGCAGATGAAGATGAAGGTCTCTaGACAGAAGATGCTCTTATAACTCCTCTCTTTGCCATGCCCTCC +
Preference number: 1 (lower is better)
Translates to: GPQSNGPNADEDEGL*TEDALITPLFAMPS
Trigger: GGAGGGCATGGCAAAGAGAGGAGTTATAAGAGCATCTTCTGTTCAGAGACCTTCATCTTCATCTGCATTTGGGCCATTAGACTGTGGTCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR GCA 90 bp CATCCAGGCCCTCATTTCTCACTCAAGTTAGCACAAAAACCTAATTaGTCTCCTTGGGCGTTATCTTCCTTCCCCTCCAATTTATCCCCC +
Preference number: 1 (lower is better)
Translates to: HPGPHFSLKLAQKPN*SPWALSSFPSNLSP
Trigger: GGGGGATAAATTGGAGGGGAAGGAAGATAACGCCCAAGGAGAGCAATTAGGTTTTTGTGCTAACTTGAGTGAGAAATGAGGGCCTGGATG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR GCA 90 bp TATGGTCAGCTACTGACATTGGCCTACAGGGCCTTAGCTGGCATCTaGATGCTGACATCTCCCAATTTTGTTCTAATCCAGGTGACTCTA +
Preference number: 1 (lower is better)
Translates to: YGQLLTLAYRALAGI*MLTSPNFVLIQVTL
Trigger: TAGAGTCACCTGGATTAGAACAAAATTGGGAGATGTCAGCATGCAGATGCCAGCTAAGGCCCTGTAGGCCAATGTCAGTAGCTGACCATA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR GCA 90 bp AACCACATCCATCTTATTCCATGGTATCACCTGCACCCAGCACAATaGCAGAAGCTTCATAAAGGCAAGAAGACATGGAACCTCTGCACC +
Preference number: 1 (lower is better)
Translates to: NHIHLIPWYHLHPAQ*QKLHKGKKTWNLCT
Trigger: GGTGCAGAGGTTCCATGTCTTCTTGCCTTTATGAAGCTTCTGGCATTGTGCTGGGTGCAGGTGATACCATGGAATAAGATGGATGTGGTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR CCA 90 bp ACTTATCGTCTGCAAGTCCACAGTAAGGAAATCTCTTCCTTCACTTaGTATCCTGCACAGACCCTACAATGCCTTCCTGTTGCCCTTAGC +
Preference number: 1 (lower is better)
Translates to: TYRLQVHSKEISSFT*YPAQTLQCLPVALS
Trigger: GCTAAGGGCAACAGGAAGGCATTGTAGGGTCTGTGCAGGATACCAAGTGAAGGAAGAGATTTCCTTACTGTGGACTTGCAGACGATAAGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR CCA 90 bp TATGTGTTAACCACTGTCCTAAGAGCTGCAGATACAGGAATAATGTaGTGTCTGCCCAGAGAGGTGTCAGCCCAGAGAGCTTTCAGTCTA +
Preference number: 1 (lower is better)
Translates to: YVLTTVLRAADTGIM*CLPREVSAQRAFSL
Trigger: TAGACTGAAAGCTCTCTGGGCTGACACCTCTCTGGGCAGACACCACATTATTCCTGTATCTGCAGCTCTTAGGACAGTGGTTAACACATA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR TCA 90 bp TTCACAAATATGGGAAGGCACACTAGAAGGAGGTGCAGTAGAGGTTaGGCAAGTCTATCTACAATTACCAAAAGGAACTTCCTTAGGGAG +
Preference number: 1 (lower is better)
Translates to: FTNMGRHTRRRCSRG*ASLSTITKRNFLRE
Trigger: CTCCCTAAGGAAGTTCCTTTTGGTAATTGTAGATAGACTTGCTCAACCTCTACTGCACCTCCTTCTAGTGTGCCTTCCCATATTTGTGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR GCA 90 bp GCATTTATTGAATACCAATTATGTGTTAACCACTGTCCTAAGAGCTaGAGATACAGGAATAATGTGGTGTCTGCCCAGAGAGGTGTCAGC +
Preference number: 1 (lower is better)
Translates to: AFIEYQLCVNHCPKS*RYRNNVVSAQRGVS
Trigger: GCTGACACCTCTCTGGGCAGACACCACATTATTCCTGTATCTGCAGCTCTTAGGACAGTGGTTAACACATAATTGGTATTCAATAAATGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR TCA 90 bp GAAGGTACTTCAGAATTAATTCTGGTTCTTTCCCCATCCTTTCACTaGATGTCTGTTATGCTCTGTAATCGACGTACTGAGCGAAAGTCC +
Preference number: 1 (lower is better)
Translates to: EGTSELILVLSPSFH*MSVMLCNRRTERKS
Trigger: GGACTTTCGCTCAGTACGTCGATTACAGAGCATAACAGACATTCAGTGAAAGGATGGGGAAAGAACCAGAATTAATTCTGAAGTACCTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR CCA 90 bp ATTTCTCAGGAAAACCTTGGCCTAAGTTCTTCAGCTTCCAAGAGATaGTCTCTTATGACCCAAAAGTTTACTTATCGTCTGCAAGTCCAC +
Preference number: 1 (lower is better)
Translates to: ISQENLGLSSSASKR*SLMTQKFTYRLQVH
Trigger: GTGGACTTGCAGACGATAAGTAAACTTTTGGGTCATAAGAGACCATCTCTTGGAAGCTGAAGAACTTAGGCCAAGGTTTTCCTGAGAAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR TCA 90 bp ATGACAGACAGGTATTTAAATAACTTACCTGACCATTGGGAGGGATaGAGAAACTTCAGAGCCACATTGCAATTAAAAAGCTGTCTAGCA +
Preference number: 1 (lower is better)
Translates to: MTDRYLNNLPDHWEG*RNFRATLQLKSCLA
Trigger: TGCTAGACAGCTTTTTAATTGCAATGTGGCTCTGAAGTTTCTTCATCCCTCCCAATGGTCAGGTAAGTTATTTAAATACCTGTCTGTCAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR TCA 90 bp TGCTCTGTGGTCTTCATCCGAAAACACATGATCCCAATCCAATTATaGGGAAAACAAGACAAATTCAAACAGAGGAGCATTCTACCAAAT +
Preference number: 1 (lower is better)
Translates to: CSVVFIRKHMIPIQL*GKQDKFKQRSILPN
Trigger: ATTTGGTAGAATGCTCCTCTGTTTGAATTTGTCTTGTTTTCCTCATAATTGGATTGGGATCATGTGTTTTCGGATGAAGACCACAGAGCA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000567593.5
3UTR-3UTR GCA 90 bp AACGGTATCAGCCCTAGTGATTTGGTGCCTTCTACCAAACTACGGAGGAAGTGTCCAGGCATGGTAGCCTaGGCCTGTAGCCCCAGCTAC +
Preference number: 2 (lower is better)
Translates to: NGISPSDLVPSTKLRRKCPGMVA*ACSPSY
Trigger: GTAGCTGGGGCTACAGGCGCAGGCTACCATGCCTGG...ACACTTCCTCCGTAGTTTGGTAGAAGGCACCAAATCACTAGGGCTGATACCGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR-3UTR CCA 90 bp CCCCACTCTCCCTCCAGCTTCTTCGGCTTCCACTGCATATGGGAATTCAAAATAAGATGCAGCCACCCCTaGGACTGGCTTCCTCTATGG +
Preference number: 2 (lower is better)
Translates to: PHSPSSFFGFHCIWEFKIRCSHP*DWLPLW
Trigger: CCATAGAGGAAGCCAGTCCCAGGGGTGGCTGCATCT...TATTTTGAATTCCCATATGCAGTGGAAGCCGAAGAAGCTGGAGGGAGAGTGGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR-3UTR GCA 90 bp GCTGGTAAAGGGGAGACAGTACTAAACGCCCTGCCCAACAAATACTCAGAATCCCGCATTGCAATGCCATaGTCCCTGCTCTTGGTCCTG +
Preference number: 2 (lower is better)
Translates to: AGKGETVLNALPNKYSESRIAMP*SLLLVL
Trigger: CAGGACCAAGAGCAGGGAGCATGGCATTGCAATGCG...GGATTCTGAGTATTTGTTGGGCAGGGCGTTTAGTACTGTCTCCCCTTTACCAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000486645.5
ENST00000561614.5
ENST00000570086.5
ENST00000570195.5
3UTR-3UTR TCA 90 bp AACGGTATCAGCCCTAGTGATTTGGTGCCTTCTACCAAACTACGGAGGAAGTGTGGCTGGAGAATCACTTaGATCCGGGAGGTGGAGGTT +
Preference number: 2 (lower is better)
Translates to: NGISPSDLVPSTKLRRKCGWRIT*IREVEV
Trigger: AACCTCCACCTCCCGGATTCAAGTGATTCTCCAGCC...ACACTTCCTCCGTAGTTTGGTAGAAGGCACCAAATCACTAGGGCTGATACCGTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR-3UTR TCA 90 bp AACGGTATCAGCCCTAGTGATTTGGTGCCTTCTACCAAACTACGGAGGAAGTGTGCAGCTGGAAGCTGCTaGCTTCCAGATTGTCACAGG +
Preference number: 2 (lower is better)
Translates to: NGISPSDLVPSTKLRRKCAAGSC*LPDCHR
Trigger: CCTGTGACAATCTGGAAGTCAGCAGCTTCCAGCTGC...ACACTTCCTCCGTAGTTTGGTAGAAGGCACCAAATCACTAGGGCTGATACCGTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR-3UTR TCA 90 bp AACGGTATCAGCCCTAGTGATTTGGTGCCTTCTACCAAACTACGGAGGAAGTGTGAAGGAGCTCACAGCTaGGTCTGTTCCCTGACACCT +
Preference number: 2 (lower is better)
Translates to: NGISPSDLVPSTKLRRKCEGAHS*VCSLTP
Trigger: AGGTGTCAGGGAACAGACTCAGCTGTGAGCTCCTTC...ACACTTCCTCCGTAGTTTGGTAGAAGGCACCAAATCACTAGGGCTGATACCGTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR-3UTR GCA 90 bp CCCCACTCTCCCTCCAGCTTCTTCGGCTTCCACTGCATATGGGAATTCAAAATAACAAGATCAAGCCCCTaGTGTGACTGCAGCTGGAAG +
Preference number: 2 (lower is better)
Translates to: PHSPSSFFGFHCIWEFKITRSSP*CDCSWK
Trigger: CTTCCAGCTGCAGTCACAGCAGGGGCTTGATCTTGT...TATTTTGAATTCCCATATGCAGTGGAAGCCGAAGAAGCTGGAGGGAGAGTGGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR-3UTR CCA 90 bp TCTCAGGAAAACCTTGGCCTAAGTTCTTCAGCTTCCAAGAGATGGTCTCTTATGAAGGCCTGTGTGTTCTaGCCCTGCCCACCTGTGTCC +
Preference number: 2 (lower is better)
Translates to: SQENLGLSSSASKRWSLMKACVF*PCPPVS
Trigger: GGACACAGGTGGGCAGGGCCAGAACACACAGGCCTT...CATAAGAGACCATCTCTTGGAAGCTGAAGAACTTAGGCCAAGGTTTTCCTGAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR-3UTR TCA 90 bp AACGGTATCAGCCCTAGTGATTTGGTGCCTTCTACCAAACTACGGAGGAAGTGTCTTATGGTCAGCTACTaGCATTGGCCTACAGGGCCT +
Preference number: 2 (lower is better)
Translates to: NGISPSDLVPSTKLRRKCLMVSY*HWPTGP
Trigger: AGGCCCTGTAGGCCAATGTCAGTAGCTGACCATAAG...ACACTTCCTCCGTAGTTTGGTAGAAGGCACCAAATCACTAGGGCTGATACCGTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR-3UTR GCA 90 bp TCTCAGGAAAACCTTGGCCTAAGTTCTTCAGCTTCCAAGAGATGGTCTCTTATGTGTGTCCTCAGCTCATaGCACCCTCCCCCTTGCTCA +
Preference number: 2 (lower is better)
Translates to: SQENLGLSSSASKRWSLMCVLSS*HPPPCS
Trigger: TGAGCAAGGGGGAGGGTGGCATGAGCTGAGGACACA...CATAAGAGACCATCTCTTGGAAGCTGAAGAACTTAGGCCAAGGTTTTCCTGAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR-3UTR GCA 90 bp TGGTCCTGTTTTCTACGTACTTTAATCACGTCTACTGGATTGCCCCCAGCAATCCGCATTGCAATGCCATaGTCCCTGCTCTTGGTCCTG +
Preference number: 2 (lower is better)
Translates to: WSCFLRTLITSTGLPPAIRIAMP*SLLLVL
Trigger: CAGGACCAAGAGCAGGGAGCATGGCATTGCAATGCG...GATTGCTGGGGGCAATCCAGTAGACGTGATTAAAGTACGTAGAAAACAGGACCA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000561614.5
ENST00000565613.5
3UTR-3UTR GCA 90 bp TCCTGTTTTCTACGTACTTTAATCACGTCTACTGGATTGCCCCCAGCAATCAGGCGCATTGCAATGCCATaGTCCCTGCTCTTGGTCCTG +
Preference number: 2 (lower is better)
Translates to: SCFLRTLITSTGLPPAIRRIAMP*SLLLVL
Trigger: CAGGACCAAGAGCAGGGAGCATGGCATTGCAATGCG...CCTGATTGCTGGGGGCAATCCAGTAGACGTGATTAAAGTACGTAGAAAACAGGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000561614.5
ENST00000565613.5
3UTR-3UTR GCA 90 bp GCTGGTAAAGGGGAGACAGTACTAAACGCCCTGCCCAACAAATACTCAGAATCCTCTTTCGCATTGCAATaGCATGCTCCCTGCTCTTGG +
Preference number: 2 (lower is better)
Translates to: AGKGETVLNALPNKYSESSFALQ*HAPCSW
Trigger: CCAAGAGCAGGGAGCATGGCATTGCAATGCGAAAGA...GGATTCTGAGTATTTGTTGGGCAGGGCGTTTAGTACTGTCTCCCCTTTACCAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000486645.5
ENST00000561614.5
ENST00000570086.5
ENST00000570195.5
3UTR-3UTR TCA 90 bp CTACGGAGGAAGTGTTTCCAATACCCCAATTTGGGTGCACTTGAGAGAAAAACACTGTTCCCTGACACCTaGCAAGATCAAGCCCCTGCT +
Preference number: 2 (lower is better)
Translates to: LRRKCFQYPNLGALERKTLFPDT*QDQAPA
Trigger: AGCAGGGGCTTGATCTTGTCAGGTGTCAGGGAACAG...TGTTTTTCTCTCAAGTGCACCCAAATTGGGGTATTGGAAACACTTCCTCCGTAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR-3UTR TCA 90 bp CTACGGAGGAAGTGTTTCCAATACCCCAATTTGGGTGCACTTGAGAGAAAAACAGCAAGTTCCCTGAGGTaGTGTCCAAGGCCTGTGTGT +
Preference number: 2 (lower is better)
Translates to: LRRKCFQYPNLGALERKTASSLR*CPRPVC
Trigger: ACACACAGGCCTTGGACATCACCTCAGGGAACTTGC...TGTTTTTCTCTCAAGTGCACCCAAATTGGGGTATTGGAAACACTTCCTCCGTAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR-3UTR GCA 90 bp CCCCACTCTCCCTCCAGCTTCTTCGGCTTCCACTGCATATGGGAATTCAAAATAGCCCTAGTGATTTGGTaGCTTCTACCAAACTACGGA +
Preference number: 2 (lower is better)
Translates to: PHSPSSFFGFHCIWEFKIALVIW*LLPNYG
Trigger: TCCGTAGTTTGGTAGAAGGCACCAAATCACTAGGGC...TATTTTGAATTCCCATATGCAGTGGAAGCCGAAGAAGCTGGAGGGAGAGTGGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR-3UTR GCA 90 bp GCTGGTAAAGGGGAGACAGTACTAAACGCCCTGCCCAACAAATACTCAGAATCCCAATGCCATGCTCCCTaGTCTTGGTCCTGTTTTCTA +
Preference number: 2 (lower is better)
Translates to: AGKGETVLNALPNKYSESQCHAP*SWSCFL
Trigger: TAGAAAACAGGACCAAGAGCAGGGAGCATGGCATTG...GGATTCTGAGTATTTGTTGGGCAGGGCGTTTAGTACTGTCTCCCCTTTACCAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000486645.5
ENST00000561614.5
ENST00000570086.5
ENST00000570195.5
3UTR-3UTR CCA 90 bp AACGGTATCAGCCCTAGTGATTTGGTGCCTTCTACCAAACTACGGAGGAAGTGTCCTAATTGCTCTCCTTaGGCGTTATCTTCCTTCCCC +
Preference number: 2 (lower is better)
Translates to: NGISPSDLVPSTKLRRKCPNCSP*ALSSFP
Trigger: GGGGAAGGAAGATAACGCCCAAGGAGAGCAATTAGG...ACACTTCCTCCGTAGTTTGGTAGAAGGCACCAAATCACTAGGGCTGATACCGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR CAA 90 bp CACCCTCCCCCTTGCTCACTGTGCTCCAGTTCACTAGCATTTTATTaGTCAAACTCCCTTCCTAGAGGAAGCTGGAAAGGTAGATCATTG +
Preference number: 2 (lower is better)
Translates to: HPPPCSLCSSSLAFY*SNSLPRGSWKGRSL
Trigger: CAATGATCTACCTTTCCAGCTTCCTCTAGGAAGGGAGTTTGACAAATAAAATGCTAGTGAACTGGAGCACAGTGAGCAAGGGGGAGGGTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR CAA 90 bp GGATTAAAAAGTTTCTTTCGCATTGCAATGCCATGCTCCCTGCTCTaGGTCCTGTTTTCTACGTACTGTCGTCCTAGCTACTCAGGAGGC +
Preference number: 2 (lower is better)
Translates to: GLKSFFRIAMPCSLL*VLFSTYCRPSYSGG
Trigger: GCCTCCTGAGTAGCTAGGACGACAGTACGTAGAAAACAGGACCAAGAGCAGGGAGCATGGCATTGCAATGCGAAAGAAACTTTTTAATCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000486645.5
ENST00000565925.5
ENST00000567593.5
ENST00000570195.5
3UTR-3UTR TCA 90 bp CCCCACTCTCCCTCCAGCTTCTTCGGCTTCCACTGCATATGGGAATTCAAAATAGTCCTCTGTCTTCTATaGCATCTACCTAATCATGGC +
Preference number: 2 (lower is better)
Translates to: PHSPSSFFGFHCIWEFKIVLCLL*HLPNHG
Trigger: GCCATGATTAGGTAGATGTCATAGAAGACAGAGGAC...TATTTTGAATTCCCATATGCAGTGGAAGCCGAAGAAGCTGGAGGGAGAGTGGGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR-3UTR GCA 90 bp GCTGGTAAAGGGGAGACAGTACTAAACGCCCTGCCCAACAAATACTCAGAATCCAAGTTTCTTTCGCATTaGAATGCCATGCTCCCTGCT +
Preference number: 2 (lower is better)
Translates to: AGKGETVLNALPNKYSESKFLSH*NAMLPA
Trigger: AGCAGGGAGCATGGCATTGCAATGCGAAAGAAACTT...GGATTCTGAGTATTTGTTGGGCAGGGCGTTTAGTACTGTCTCCCCTTTACCAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000486645.5
ENST00000561614.5
ENST00000570086.5
ENST00000570195.5
3UTR-3UTR CCA 90 bp CTACGGAGGAAGTGTTTCCAATACCCCAATTTGGGTGCACTTGAGAGAAAAACAGTAATCCCAACACTTTaGGAGGCTGAAGTGGGCGGA +
Preference number: 2 (lower is better)
Translates to: LRRKCFQYPNLGALERKTVIPTL*EAEVGG
Trigger: TCCGCCCACTTCAGCCTCCCAAAGTGTTGGGATTAC...TGTTTTTCTCTCAAGTGCACCCAAATTGGGGTATTGGAAACACTTCCTCCGTAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR-3UTR CCA 90 bp AACGGTATCAGCCCTAGTGATTTGGTGCCTTCTACCAAACTACGGAGGAAGTGTAGAGAGGAGACACACTaGCCTAAGGTTAATGTCCAG +
Preference number: 2 (lower is better)
Translates to: NGISPSDLVPSTKLRRKCREETH*PKVNVQ
Trigger: CTGGACATTAACCTTAGGCCAGTGTGTCTCCTCTCT...ACACTTCCTCCGTAGTTTGGTAGAAGGCACCAAATCACTAGGGCTGATACCGTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR-3UTR CCA 90 bp CCCCACTCTCCCTCCAGCTTCTTCGGCTTCCACTGCATATGGGAATTCAAAATACTTCCTAGAGGAAGCTaGAAAGGTAGATCATTGCCA +
Preference number: 2 (lower is better)
Translates to: PHSPSSFFGFHCIWEFKILPRGS*KGRSLP
Trigger: TGGCAATGATCTACCTTTCCAGCTTCCTCTAGGAAG...TATTTTGAATTCCCATATGCAGTGGAAGCCGAAGAAGCTGGAGGGAGAGTGGGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR-3UTR TCA 90 bp AACGGTATCAGCCCTAGTGATTTGGTGCCTTCTACCAAACTACGGAGGAAGTGTCACAATAACTCTATGTaGCAGGTACTGTCACTGGGT +
Preference number: 2 (lower is better)
Translates to: NGISPSDLVPSTKLRRKCHNNSM*QVLSLG
Trigger: ACCCAGTGACAGTACCTGTCACATAGAGTTATTGTG...ACACTTCCTCCGTAGTTTGGTAGAAGGCACCAAATCACTAGGGCTGATACCGTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR-3UTR GCA 90 bp ACTGTCACTGGGTTGAACTGGTTTAACCATAACTATTCACCGAATAACCAGAAAAGCCCCTGCTGTGACTaGAGCTGGAAGCTGCTGACT +
Preference number: 2 (lower is better)
Translates to: TVTGLNWFNHNYSPNNQKSPCCD*SWKLLT
Trigger: AGTCAGCAGCTTCCAGCTGCAGTCACAGCAGGGGCT...TTTCTGGTTATTCGGTGAATAGTTATGGTTAAACCAGTTCAACCCAGTGACAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR-3UTR GCA 90 bp CCCCACTCTCCCTCCAGCTTCTTCGGCTTCCACTGCATATGGGAATTCAAAATAATGCTCCAAATAACATaGAAGTTCCCTGAGGTGATG +
Preference number: 2 (lower is better)
Translates to: PHSPSSFFGFHCIWEFKIMLQIT*KFPEVM
Trigger: CATCACCTCAGGGAACTTGCATGTTATTTGGAGCAT...TATTTTGAATTCCCATATGCAGTGGAAGCCGAAGAAGCTGGAGGGAGAGTGGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR-3UTR GCA 90 bp TTAATCACGTCTACTGGATTGCCCCCAGCAATCAGGTTGAGAAGGGTCTTAAGGAAGTTTCTTTCGCATTaGAATGCCATGCTCCCTGCT +
Preference number: 2 (lower is better)
Translates to: LITSTGLPPAIRLRRVLRKFLSH*NAMLPA
Trigger: AGCAGGGAGCATGGCATTGCAATGCGAAAGAAACTT...CCTTAAGACCCTTCTCAACCTGATTGCTGGGGGCAATCCAGTAGACGTGATTAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000561614.5
ENST00000565613.5
3UTR-3UTR CCA 90 bp TCTCAGGAAAACCTTGGCCTAAGTTCTTCAGCTTCCAAGAGATGGTCTCTTATGTGTCCAGGAGTTAACTaGCACCTCGAGTGGACACAT +
Preference number: 2 (lower is better)
Translates to: SQENLGLSSSASKRWSLMCPGVN*HLEWTH
Trigger: ATGTGTCCACTCGAGGTGCCAGTTAACTCCTGGACA...CATAAGAGACCATCTCTTGGAAGCTGAAGAACTTAGGCCAAGGTTTTCCTGAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR-3UTR CCA 90 bp AACGGTATCAGCCCTAGTGATTTGGTGCCTTCTACCAAACTACGGAGGAAGTGTTTCATCCTGCTCTTATaGTCAGCTACTGACATTGGC +
Preference number: 2 (lower is better)
Translates to: NGISPSDLVPSTKLRRKCFILLL*SATDIG
Trigger: GCCAATGTCAGTAGCTGACCATAAGAGCAGGATGAA...ACACTTCCTCCGTAGTTTGGTAGAAGGCACCAAATCACTAGGGCTGATACCGTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR-3UTR CCA 90 bp TCTACGTACTTTAATCACGTCTACTGGATTGCCCCCAGCAATCAGGTTGAGAAGCATGCTCCCTGCTCTTaGTCCTGTTTTCTACGTACT +
Preference number: 2 (lower is better)
Translates to: STYFNHVYWIAPSNQVEKHAPCS*SCFLRT
Trigger: AGTACGTAGAAAACAGGACCAAGAGCAGGGAGCATG...CTTCTCAACCTGATTGCTGGGGGCAATCCAGTAGACGTGATTAAAGTACGTAGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000561614.5
ENST00000565613.5
3UTR-3UTR TCA 90 bp CCCCACTCTCCCTCCAGCTTCTTCGGCTTCCACTGCATATGGGAATTCAAAATAATAGCTCCTTCTTCATaGAGACTGAACATGAAAGTC +
Preference number: 2 (lower is better)
Translates to: PHSPSSFFGFHCIWEFKIIAPSS*RLNMKV
Trigger: GACTTTCATGTTCAGTCTTCATGAAGAAGGAGCTAT...TATTTTGAATTCCCATATGCAGTGGAAGCCGAAGAAGCTGGAGGGAGAGTGGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR-3UTR TCA 90 bp AACGGTATCAGCCCTAGTGATTTGGTGCCTTCTACCAAACTACGGAGGAAGTGTTTTCAAAGCTGTCTATaGTCTTCCTCCACTCTAAGC +
Preference number: 2 (lower is better)
Translates to: NGISPSDLVPSTKLRRKCFQSCL*SSSTLS
Trigger: GCTTAGAGTGGAGGAAGATCATAGACAGCTTTGAAA...ACACTTCCTCCGTAGTTTGGTAGAAGGCACCAAATCACTAGGGCTGATACCGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR-3UTR TCA 90 bp TCTCAGGAAAACCTTGGCCTAAGTTCTTCAGCTTCCAAGAGATGGTCTCTTATGCTGGCATCTGCATGCTaGCATCTCCCAATTTTGTTC +
Preference number: 2 (lower is better)
Translates to: SQENLGLSSSASKRWSLMLASAC*HLPILF
Trigger: GAACAAAATTGGGAGATGTCAGCATGCAGATGCCAG...CATAAGAGACCATCTCTTGGAAGCTGAAGAACTTAGGCCAAGGTTTTCCTGAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR-3UTR TCA 90 bp TCTCAGGAAAACCTTGGCCTAAGTTCTTCAGCTTCCAAGAGATGGTCTCTTATGAAACAGATTTCACTCTaGTCTACAGCAGGCTGGGGA +
Preference number: 2 (lower is better)
Translates to: SQENLGLSSSASKRWSLMKQISL*STAGWG
Trigger: TCCCCAGCCTGCTGTAGATCAGAGTGAAATCTGTTT...CATAAGAGACCATCTCTTGGAAGCTGAAGAACTTAGGCCAAGGTTTTCCTGAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR-3UTR GCA 90 bp AACGGTATCAGCCCTAGTGATTTGGTGCCTTCTACCAAACTACGGAGGAAGTGTGCACAAAAACCTAATTaGTCTCCTTGGGCGTTATCT +
Preference number: 2 (lower is better)
Translates to: NGISPSDLVPSTKLRRKCAQKPN*SPWALS
Trigger: AGATAACGCCCAAGGAGAGCAATTAGGTTTTTGTGC...ACACTTCCTCCGTAGTTTGGTAGAAGGCACCAAATCACTAGGGCTGATACCGTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR-3UTR GCA 90 bp AACGGTATCAGCCCTAGTGATTTGGTGCCTTCTACCAAACTACGGAGGAAGTGTTCCAAAGTTTCATCCTaGTCTTATGGTCAGCTACTG +
Preference number: 2 (lower is better)
Translates to: NGISPSDLVPSTKLRRKCSKVSS*SYGQLL
Trigger: CAGTAGCTGACCATAAGAGCAGGATGAAACTTTGGA...ACACTTCCTCCGTAGTTTGGTAGAAGGCACCAAATCACTAGGGCTGATACCGTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR-3UTR CCA 90 bp AACGGTATCAGCCCTAGTGATTTGGTGCCTTCTACCAAACTACGGAGGAAGTGTAATTTGAGATCAGCCTaGCCAACATGGCAAAACTCT +
Preference number: 2 (lower is better)
Translates to: NGISPSDLVPSTKLRRKCNLRSA*PTWQNS
Trigger: AGAGTTTTGCCATGTTGGCCAGGCTGATCTCAAATT...ACACTTCCTCCGTAGTTTGGTAGAAGGCACCAAATCACTAGGGCTGATACCGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR-3UTR CCA 90 bp CCCCACTCTCCCTCCAGCTTCTTCGGCTTCCACTGCATATGGGAATTCAAAATATCCAATACCCCAATTTaGGTGCACTTGAGAGAAAAA +
Preference number: 2 (lower is better)
Translates to: PHSPSSFFGFHCIWEFKISNTPI*VHLREK
Trigger: TTTTTCTCTCAAGTGCACCCAAATTGGGGTATTGGA...TATTTTGAATTCCCATATGCAGTGGAAGCCGAAGAAGCTGGAGGGAGAGTGGGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR-3UTR CCA 90 bp TACTTTAATCACGTCTACTGGATTGCCCCCAGCAATCAGGTTGAGAAGGGTCTTTTTAATCACGTCTACTaGATTGCCCCCAGCAATCAG +
Preference number: 2 (lower is better)
Translates to: YFNHVYWIAPSNQVEKGLFNHVY*IAPSNQ
Trigger: CTGATTGCTGGGGGCAATCCAGTAGACGTGATTAAA...AAGACCCTTCTCAACCTGATTGCTGGGGGCAATCCAGTAGACGTGATTAAAGTA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 2 transcripts:
ENST00000561614.5
ENST00000565613.5
3UTR CAA 90 bp CCTCCAGCTTCTTCGGCTTCCACTGCATATGGGAATTCAAAATATTaGGAAATCCTCAGGAAAAAGTGCGCTTGCTCTAGACAGGAGAAA +
Preference number: 2 (lower is better)
Translates to: PPASSASTAYGNSKY*EILRKKCACSRQEK
Trigger: TTTCTCCTGTCTAGAGCAAGCGCACTTTTTCCTGAGGATTTCCAAATATTTTGAATTCCCATATGCAGTGGAAGCCGAAGAAGCTGGAGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR-3UTR GCA 90 bp TCCCAATCCAATTATGAGGAAAACAAGACAAATTCAAACAGAGGAGCATTCTACCGCATTGCAATGCCATaGTCCCTGCTCTTGGTCCTG +
Preference number: 2 (lower is better)
Translates to: SQSNYEENKTNSNRGAFYRIAMP*SLLLVL
Trigger: CAGGACCAAGAGCAGGGAGCATGGCATTGCAATGCG...GTAGAATGCTCCTCTGTTTGAATTTGTCTTGTTTTCCTCATAATTGGATTGGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000567593.5
3UTR-3UTR CCA 90 bp TCTCAGGAAAACCTTGGCCTAAGTTCTTCAGCTTCCAAGAGATGGTCTCTTATGATCCATCTTATTCCATaGTATCACCTGCACCCAGCA +
Preference number: 2 (lower is better)
Translates to: SQENLGLSSSASKRWSLMIHLIP*YHLHPA
Trigger: TGCTGGGTGCAGGTGATACCATGGAATAAGATGGAT...CATAAGAGACCATCTCTTGGAAGCTGAAGAACTTAGGCCAAGGTTTTCCTGAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR-3UTR TCA 90 bp ACTGTCACTGGGTTGAACTGGTTTAACCATAACTATTCACCGAATAACCAGAAAGGAACACTGGTGAAATaGCTGCTAGAATTGGGCACG +
Preference number: 2 (lower is better)
Translates to: TVTGLNWFNHNYSPNNQKGTLVK*LLELGT
Trigger: CGTGCCCAATTCTAGCAGTCATTTCACCAGTGTTCC...TTTCTGGTTATTCGGTGAATAGTTATGGTTAAACCAGTTCAACCCAGTGACAGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR-3UTR GCA 90 bp AAATTTCAGAATGTTGTGCTCTGTGGTCTTCATCCGAAAACACATGATCCCAATTCTTTCGCATTGCAATaGCATGCTCCCTGCTCTTGG +
Preference number: 2 (lower is better)
Translates to: KFQNVVLCGLHPKTHDPNSFALQ*HAPCSW
Trigger: CCAAGAGCAGGGAGCATGGCATTGCAATGCGAAAGA...ATTGGGATCATGTGTTTTCGGATGAAGACCACAGAGCACAACATTCTGAAATTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000567593.5
3UTR CAA 90 bp CTACGTACTTTAATCACGTCTACTGGATTGCCCCCAGCAATCAGGTaGAGAAGGGTCTTAAGGGAAACTCTTCAGAAGATAATACTTTGT +
Preference number: 2 (lower is better)
Translates to: LRTLITSTGLPPAIR*RRVLRETLQKIILC
Trigger: ACAAAGTATTATCTTCTGAAGAGTTTCCCTTAAGACCCTTCTCAACCTGATTGCTGGGGGCAATCCAGTAGACGTGATTAAAGTACGTAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000561614.5
ENST00000565613.5
3UTR-3UTR CCA 90 bp ACTGTCACTGGGTTGAACTGGTTTAACCATAACTATTCACCGAATAACCAGAAAAACTGGCACCTCGAGTaGACACATTCAACCAAATGG +
Preference number: 2 (lower is better)
Translates to: TVTGLNWFNHNYSPNNQKNWHLE*THSTKW
Trigger: CCATTTGGTTGAATGTGTCCACTCGAGGTGCCAGTT...TTTCTGGTTATTCGGTGAATAGTTATGGTTAAACCAGTTCAACCCAGTGACAGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR-3UTR CCA 90 bp TCTCAGGAAAACCTTGGCCTAAGTTCTTCAGCTTCCAAGAGATGGTCTCTTATGAACAAGGCCTCATGCTaGATATTATACACAGAACTC +
Preference number: 2 (lower is better)
Translates to: SQENLGLSSSASKRWSLMNKASC*ILYTEL
Trigger: GAGTTCTGTGTATAATATCCAGCATGAGGCCTTGTT...CATAAGAGACCATCTCTTGGAAGCTGAAGAACTTAGGCCAAGGTTTTCCTGAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR-3UTR GCA 90 bp TCTCAGGAAAACCTTGGCCTAAGTTCTTCAGCTTCCAAGAGATGGTCTCTTATGAGTTTACTTATCGTCTaGAAGTCCACAGTAAGGAAA +
Preference number: 2 (lower is better)
Translates to: SQENLGLSSSASKRWSLMSLLIV*KSTVRK
Trigger: TTTCCTTACTGTGGACTTGCAGACGATAAGTAAACT...CATAAGAGACCATCTCTTGGAAGCTGAAGAACTTAGGCCAAGGTTTTCCTGAGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR-3UTR GCA 90 bp ACACATGATCCCAATCCAATTATGAGGAAAACAAGACAAATTCAAACAGAGGAGCAATGCCATGCTCCCTaGTCTTGGTCCTGTTTTCTA +
Preference number: 2 (lower is better)
Translates to: THDPNPIMRKTRQIQTEEQCHAP*SWSCFL
Trigger: TAGAAAACAGGACCAAGAGCAGGGAGCATGGCATTG...CTCCTCTGTTTGAATTTGTCTTGTTTTCCTCATAATTGGATTGGGATCATGTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000567593.5
3UTR-3UTR GCA 90 bp AAATTTCAGAATGTTGTGCTCTGTGGTCTTCATCCGAAAACACATGATCCCAATAATACCTGGCCATTATaGCTCAAACCTTTTCGGGTC +
Preference number: 2 (lower is better)
Translates to: KFQNVVLCGLHPKTHDPNNTWPL*LKPFRV
Trigger: GACCCGAAAAGGTTTGAGGCATAATGGCCAGGTATT...ATTGGGATCATGTGTTTTCGGATGAAGACCACAGAGCACAACATTCTGAAATTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000567593.5
3UTR-3UTR GCA 90 bp ACTGTCACTGGGTTGAACTGGTTTAACCATAACTATTCACCGAATAACCAGAAACTAAATGCCTTAAAGTaGGCCTCAGAATGTATCCCA +
Preference number: 2 (lower is better)
Translates to: TVTGLNWFNHNYSPNNQKLNALK*ASECIP
Trigger: TGGGATACATTCTGAGGCGCACTTTAAGGCATTTAG...TTTCTGGTTATTCGGTGAATAGTTATGGTTAAACCAGTTCAACCCAGTGACAGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR-3UTR GCA 90 bp ACTGTCACTGGGTTGAACTGGTTTAACCATAACTATTCACCGAATAACCAGAAATCTAGTCATGCTAAATaGCTTAAAGTGCGCCTCAGA +
Preference number: 2 (lower is better)
Translates to: TVTGLNWFNHNYSPNNQKSSHAK*LKVRLR
Trigger: TCTGAGGCGCACTTTAAGGCATTTAGCATGACTAGA...TTTCTGGTTATTCGGTGAATAGTTATGGTTAAACCAGTTCAACCCAGTGACAGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR-3UTR GCA 90 bp ACTGTCACTGGGTTGAACTGGTTTAACCATAACTATTCACCGAATAACCAGAAAGGAAAGGTAGATCATTaGCATAGCCTTCAGTGTGTA +
Preference number: 2 (lower is better)
Translates to: TVTGLNWFNHNYSPNNQKGKVDH*HSLQCV
Trigger: TACACACTGAAGGCTATGGCAATGATCTACCTTTCC...TTTCTGGTTATTCGGTGAATAGTTATGGTTAAACCAGTTCAACCCAGTGACAGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR-3UTR CCA 90 bp AAATTTCAGAATGTTGTGCTCTGTGGTCTTCATCCGAAAACACATGATCCCAATATTCTACCAAATACCTaGCCATTATGCCTCAAACCT +
Preference number: 2 (lower is better)
Translates to: KFQNVVLCGLHPKTHDPNILPNT*PLCLKP
Trigger: AGGTTTGAGGCATAATGGCCAGGTATTTGGTAGAAT...ATTGGGATCATGTGTTTTCGGATGAAGACCACAGAGCACAACATTCTGAAATTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000567593.5
3UTR GCA 72 bp CCTGAGGTGATGTCCAAGGCCTGTGTGTTCTGGCCCTaGCCACCTGTGTCCTCAGCTCATGCCACCCTCCCC +
Preference number: 3 (lower is better)
Translates to: PEVMSKACVFWP*PPVSSAHATLP
Trigger: GGGGAGGGTGGCATGAGCTGAGGACACAGGTGGGCAGGGCCAGAACACACAGGCCTTGGACATCACCTCAGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR TCA 72 bp ATGTACAGGGAGCCAGAGAATGGGGCCGGCTTGGGATaGGTTCTAGAGGCCTGGCCCTTCCTTCTGCCTCAT +
Preference number: 3 (lower is better)
Translates to: MYREPENGAGLG*VLEAWPFLLPH
Trigger: ATGAGGCAGAAGGAAGGGCCAGGCCTCTAGAACTCATCCCAAGCCGGCCCCATTCTCTGGCTCCCTGTACAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR CCA 72 bp GAGCCAGAGGAGTCCTGGGAGGTCTCAGCATCGATGTaGAAAGCAGCACAGGGAGGCACAAGGTACCTGAAC +
Preference number: 3 (lower is better)
Translates to: EPEESWEVSASM*KAAQGGTRYLN
Trigger: GTTCAGGTACCTTGTGCCTCCCTGTGCTGCTTTCCACATCGATGCTGAGACCTCCCAGGACTCCTCTGGCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR CCA 72 bp GAGGTGAGGACAGAGCATCAAGAGCCAGAGGAGTCCTaGGAGGTCTCAGCATCGATGTGGAAAGCAGCACAG +
Preference number: 3 (lower is better)
Translates to: EVRTEHQEPEES*EVSASMWKAAQ
Trigger: CTGTGCTGCTTTCCACATCGATGCTGAGACCTCCCAGGACTCCTCTGGCTCTTGATGCTCTGTCCTCACCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR TCA 72 bp AGAAGGAGCTCACAGCTGAGTCTGTTCCCTGACACCTaGCAAGATCAAGCCCCTGCTGTGACTGCAGCTGGA +
Preference number: 3 (lower is better)
Translates to: RRSSQLSLFPDT*QDQAPAVTAAG
Trigger: TCCAGCTGCAGTCACAGCAGGGGCTTGATCTTGTCAGGTGTCAGGGAACAGACTCAGCTGTGAGCTCCTTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR TCA 72 bp TGTTCCCTGACACCTGACAAGATCAAGCCCCTGCTGTaGCTGCAGCTGGAAGCTGCTGACTTCCAGATTGTC +
Preference number: 3 (lower is better)
Translates to: CSLTPDKIKPLL*LQLEAADFQIV
Trigger: GACAATCTGGAAGTCAGCAGCTTCCAGCTGCAGTCACAGCAGGGGCTTGATCTTGTCAGGTGTCAGGGAACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR GCA 72 bp CCCACCTGTGTCCTCAGCTCATGCCACCCTCCCCCTTaGTCACTGTGCTCCAGTTCACTAGCATTTTATTTG +
Preference number: 3 (lower is better)
Translates to: PTCVLSSCHPPP*SLCSSSLAFYL
Trigger: CAAATAAAATGCTAGTGAACTGGAGCACAGTGAGCAAGGGGGAGGGTGGCATGAGCTGAGGACACAGGTGGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR-3UTR CAA 90 bp AACGGTATCAGCCCTAGTGATTTGGTGCCTTCTACCAAACTACGGAGGAAGTGTATGCCACCCTCCCCCTaGCTCACTGTGCTCCAGTTC +
Preference number: 3 (lower is better)
Translates to: NGISPSDLVPSTKLRRKCMPPSP*LTVLQF
Trigger: GAACTGGAGCACAGTGAGCAAGGGGGAGGGTGGCAT...ACACTTCCTCCGTAGTTTGGTAGAAGGCACCAAATCACTAGGGCTGATACCGTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR TCA 72 bp CTGTCAGTCTTGTTCTCCATCTCCTGTCCTCCCATGTaGCCAGCTGCCGGTGAGATCAGACTAGAGCTTAGA +
Preference number: 3 (lower is better)
Translates to: LSVLFSISCPPM*PAAGEIRLELR
Trigger: TCTAAGCTCTAGTCTGATCTCACCGGCAGCTGGTCACATGGGAGGACAGGAGATGGAGAACAAGACTGACAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR TCA 72 bp CTGAGGTGGGAGGATCACTTGAGTTTGAGGCTTCCGTaGGTTACGATCACCCTACTGCACTCCAGCTTAGGT +
Preference number: 3 (lower is better)
Translates to: LRWEDHLSLRLP*VTITLLHSSLG
Trigger: ACCTAAGCTGGAGTGCAGTAGGGTGATCGTAACTCACGGAAGCCTCAAACTCAAGTGATCCTCCCACCTCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000567593.5
3UTR GCA 72 bp ATTACAGGCGCAAGCCACCCCACACGGCTGAGATTCTaGGTTGCTAACAAACTTTCCCGGGTTACGCTAAAG +
Preference number: 3 (lower is better)
Translates to: ITGASHPTRLRF*VANKLSRVTLK
Trigger: CTTTAGCGTAACCCGGGAAAGTTTGTTAGCAACGCAGAATCTCAGCCGTGTGGGGTGGCTTGCGCCTGTAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR CCA 72 bp TGGGGCCCCACTCAAACGGTATCAGCCCTAGTGATTTaGTGCCTTCTACCAAACTACGGAGGAAGTGTTTCC +
Preference number: 3 (lower is better)
Translates to: WGPTQTVSALVI*CLLPNYGGSVS
Trigger: GGAAACACTTCCTCCGTAGTTTGGTAGAAGGCACCAAATCACTAGGGCTGATACCGTTTGAGTGGGGCCCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR CCA 72 bp GTAAAGCATGGAATAAGATGCAGCCACCCCTGGGACTaGCTTCCTCTATGGAAAGGCAGGATGTACAGGGAG +
Preference number: 3 (lower is better)
Translates to: VKHGIRCSHPWD*LPLWKGRMYRE
Trigger: CTCCCTGTACATCCTGCCTTTCCATAGAGGAAGCCAGTCCCAGGGGTGGCTGCATCTTATTCCATGCTTTAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR CCA 72 bp ATTGGTACTGGGAAGGTTCTTGCCCACTTCAGTAAATaGGGCCCACAGGAAGGTCTGAAGGGGCTGGAACAA +
Preference number: 3 (lower is better)
Translates to: IGTGKVLAHFSK*GPQEGLKGLEQ
Trigger: TTGTTCCAGCCCCTTCAGACCTTCCTGTGGGCCCCATTTACTGAAGTGGGCAAGAACCTTCCCAGTACCAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR CCA 72 bp ACCACTGTCCTAAGAGCTGCAGATACAGGAATAATGTaGTGTCTGCCCAGAGAGGTGTCAGCCCAGAGAGCT +
Preference number: 3 (lower is better)
Translates to: TTVLRAADTGIM*CLPREVSAQRA
Trigger: AGCTCTCTGGGCTGACACCTCTCTGGGCAGACACCACATTATTCCTGTATCTGCAGCTCTTAGGACAGTGGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR-3UTR CAA 90 bp CACGTCTACTGGATTGCCCCCAGCAATCAGGTTGAGAAGGGTCTTAAGGGAAACCCATGCTCCCTGCTCTaGGTCCTGTTTTCTACGTAC +
Preference number: 3 (lower is better)
Translates to: HVYWIAPSNQVEKGLKGNPCSLL*VLFSTY
Trigger: GTACGTAGAAAACAGGACCAAGAGCAGGGAGCATGG...GTTTCCCTTAAGACCCTTCTCAACCTGATTGCTGGGGGCAATCCAGTAGACGTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000561614.5
ENST00000565613.5
3UTR-3UTR CAA 90 bp GCTGGTAAAGGGGAGACAGTACTAAACGCCCTGCCCAACAAATACTCAGAATCCCCATGCTCCCTGCTCTaGGTCCTGTTTTCTACGTAC +
Preference number: 3 (lower is better)
Translates to: AGKGETVLNALPNKYSESPCSLL*VLFSTY
Trigger: GTACGTAGAAAACAGGACCAAGAGCAGGGAGCATGG...GGATTCTGAGTATTTGTTGGGCAGGGCGTTTAGTACTGTCTCCCCTTTACCAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENST00000486645.5
ENST00000561614.5
ENST00000570086.5
ENST00000570195.5
3UTR TCA 72 bp TGCGCTTGCTCTAGACAGGAGAAACAGATTTCACTCTaGTCTACAGCAGGCTGGGGAAAGTCAGCAAGGCTG +
Preference number: 3 (lower is better)
Translates to: CACSRQEKQISL*STAGWGKSARL
Trigger: CAGCCTTGCTGACTTTCCCCAGCCTGCTGTAGATCAGAGTGAAATCTGTTTCTCCTGTCTAGAGCAAGCGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR GCA 72 bp GTCCTCAGCTCATGCCACCCTCCCCCTTGCTCACTGTaGTCCAGTTCACTAGCATTTTATTTGTCAAACTCC +
Preference number: 3 (lower is better)
Translates to: VLSSCHPPPCSL*SSSLAFYLSNS
Trigger: GGAGTTTGACAAATAAAATGCTAGTGAACTGGAGCACAGTGAGCAAGGGGGAGGGTGGCATGAGCTGAGGAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR-3UTR CAA 90 bp CCCCACTCTCCCTCCAGCTTCTTCGGCTTCCACTGCATATGGGAATTCAAAATACGAAAGTCCAGCTTCTaGAATACCTCCTGTGATGGG +
Preference number: 3 (lower is better)
Translates to: PHSPSSFFGFHCIWEFKIRKSSF*NTSCDG
Trigger: CCCATCACAGGAGGTATTCAAGAAGCTGGACTTTCG...TATTTTGAATTCCCATATGCAGTGGAAGCCGAAGAAGCTGGAGGGAGAGTGGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR-3UTR CAA 90 bp TTAATCACGTCTACTGGATTGCCCCCAGCAATCAGGTTGAGAAGGGTCTTAAGGCCATGCTCCCTGCTCTaGGTCCTGTTTTCTACGTAC +
Preference number: 3 (lower is better)
Translates to: LITSTGLPPAIRLRRVLRPCSLL*VLFSTY
Trigger: GTACGTAGAAAACAGGACCAAGAGCAGGGAGCATGG...CCTTAAGACCCTTCTCAACCTGATTGCTGGGGGCAATCCAGTAGACGTGATTAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000561614.5
ENST00000565613.5
3UTR GCA 72 bp CCCAATTTTGTTCTAATCCAGGTGACTCTAACAAGCTaGAGACCTAAATACCCAGCAGCAACCCGGAAGCCC +
Preference number: 3 (lower is better)
Translates to: PNFVLIQVTLTS*RPKYPAATRKP
Trigger: GGGCTTCCGGGTTGCTGCTGGGTATTTAGGTCTGCAGCTTGTTAGAGTCACCTGGATTAGAACAAAATTGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR GCA 72 bp GGCCCCACTCAAACGGTATCAGCCCTAGTGATTTGGTaGCTTCTACCAAACTACGGAGGAAGTGTTTCCAAT +
Preference number: 3 (lower is better)
Translates to: GPTQTVSALVIW*LLPNYGGSVSN
Trigger: ATTGGAAACACTTCCTCCGTAGTTTGGTAGAAGGCACCAAATCACTAGGGCTGATACCGTTTGAGTGGGGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR CCA 72 bp TGGTCAGCTACTGACATTGGCCTACAGGGCCTTAGCTaGCATCTGCATGCTGACATCTCCCAATTTTGTTCT +
Preference number: 3 (lower is better)
Translates to: WSATDIGLQGLS*HLHADISQFCS
Trigger: AGAACAAAATTGGGAGATGTCAGCATGCAGATGCCAGCTAAGGCCCTGTAGGCCAATGTCAGTAGCTGACCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR TCA 72 bp GTTTTCCATTATGCTCCAAATAACATGCAAGTTCCCTaGGGTGATGTCCAAGGCCTGTGTGTTCTGGCCCTG +
Preference number: 3 (lower is better)
Translates to: VFHYAPNNMQVP*GDVQGLCVLAL
Trigger: CAGGGCCAGAACACACAGGCCTTGGACATCACCTCAGGGAACTTGCATGTTATTTGGAGCATAATGGAAAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR GCA 72 bp CTACTGACATTGGCCTACAGGGCCTTAGCTGGCATCTaGATGCTGACATCTCCCAATTTTGTTCTAATCCAG +
Preference number: 3 (lower is better)
Translates to: LLTLAYRALAGI*MLTSPNFVLIQ
Trigger: CTGGATTAGAACAAAATTGGGAGATGTCAGCATGCAGATGCCAGCTAAGGCCCTGTAGGCCAATGTCAGTAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR CCA 72 bp AAGAACAGTCCTATACTCAGCAGAGAGGAGACACACTaGCCTAAGGTTAATGTCCAGGAGTTAACTGGCACC +
Preference number: 3 (lower is better)
Translates to: KNSPILSREETH*PKVNVQELTGT
Trigger: GGTGCCAGTTAACTCCTGGACATTAACCTTAGGCCAGTGTGTCTCCTCTCTGCTGAGTATAGGACTGTTCTT
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR CCA 72 bp GTTTCTTTCGCATTGCAATGCCATGCTCCCTGCTCTTaGTCCTGTTTTCTACGTACTGTCGTCCTAGCTACT +
Preference number: 3 (lower is better)
Translates to: VSFALQCHAPCS*SCFLRTVVLAT
Trigger: AGTAGCTAGGACGACAGTACGTAGAAAACAGGACCAAGAGCAGGGAGCATGGCATTGCAATGCGAAAGAAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000486645.5
ENST00000562713.3
ENST00000565925.5
ENST00000567593.5
ENST00000570195.5
3UTR-3UTR CAA 90 bp CCCCACTCTCCCTCCAGCTTCTTCGGCTTCCACTGCATATGGGAATTCAAAATAGGTACTGTCACTGGGTaGAACTGGTTTAACCATAAC +
Preference number: 3 (lower is better)
Translates to: PHSPSSFFGFHCIWEFKIGTVTG*NWFNHN
Trigger: GTTATGGTTAAACCAGTTCAACCCAGTGACAGTACC...TATTTTGAATTCCCATATGCAGTGGAAGCCGAAGAAGCTGGAGGGAGAGTGGGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR-3UTR CAA 90 bp CTACGGAGGAAGTGTTTCCAATACCCCAATTTGGGTGCACTTGAGAGAAAAACAATGGTGAAGTCAGGTTaGCTGGTAAAGGGGAGACAG +
Preference number: 3 (lower is better)
Translates to: LRRKCFQYPNLGALERKTMVKSG*LVKGRQ
Trigger: CTGTCTCCCCTTTACCAGCAAACCTGACTTCACCAT...TGTTTTTCTCTCAAGTGCACCCAAATTGGGGTATTGGAAACACTTCCTCCGTAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR-3UTR CAA 90 bp CTACGGAGGAAGTGTTTCCAATACCCCAATTTGGGTGCACTTGAGAGAAAAACACCTAAGCTCAGGAATTaGAGATCAGCCTGGCCAACA +
Preference number: 3 (lower is better)
Translates to: LRRKCFQYPNLGALERKTPKLRN*RSAWPT
Trigger: TGTTGGCCAGGCTGATCTCAAATTCCTGAGCTTAGG...TGTTTTTCTCTCAAGTGCACCCAAATTGGGGTATTGGAAACACTTCCTCCGTAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR TCA 72 bp TCTCAGAAACACTTGGCAGAAGGAACACTGGTGAAATaGCTGCTAGAATTGGGCACGGGAAGAACAGTCCTA +
Preference number: 3 (lower is better)
Translates to: SQKHLAEGTLVK*LLELGTGRTVL
Trigger: TAGGACTGTTCTTCCCGTGCCCAATTCTAGCAGTCATTTCACCAGTGTTCCTTCTGCCAAGTGTTTCTGAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR TCA 72 bp GACTCCCTAAGAGGACACAGATGGTCCTTCGTGATGTaGACCGTCACTAGAACCACATCCATCTTATTCCAT +
Preference number: 3 (lower is better)
Translates to: DSLRGHRWSFVM*TVTRTTSILFH
Trigger: ATGGAATAAGATGGATGTGGTTCTAGTGACGGTTCACATCACGAAGGACCATCTGTGTCCTCTTAGGGAGTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR TCA 72 bp ACAGTTGCAGGCTCTATAACCCCACCATTTCTGCTCTaGTCCATACCAGAAAATGGATGCTTCATGGACCGT +
Preference number: 3 (lower is better)
Translates to: TVAGSITPPFLL*SIPENGCFMDR
Trigger: ACGGTCCATGAAGCATCCATTTTCTGGTATGGATCAGAGCAGAAATGGTGGGGTTATAGAGCCTGCAACTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR TCA 72 bp TTGCCCACTTCAGTAAATGGGGCCCACAGGAAGGTCTaGAGGGGCTGGAACAATTTAGCATTAATGAACTCT +
Preference number: 3 (lower is better)
Translates to: LPTSVNGAHRKV*RGWNNLALMNS
Trigger: AGAGTTCATTAATGCTAAATTGTTCCAGCCCCTTCAGACCTTCCTGTGGGCCCCATTTACTGAAGTGGGCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR-3UTR CAA 90 bp CTACGGAGGAAGTGTTTCCAATACCCCAATTTGGGTGCACTTGAGAGAAAAACACTGCTGACTTCCAGATaGTCACAGGTCTCAGAAACA +
Preference number: 3 (lower is better)
Translates to: LRRKCFQYPNLGALERKTLLTSR*SQVSET
Trigger: TGTTTCTGAGACCTGTGACAATCTGGAAGTCAGCAG...TGTTTTTCTCTCAAGTGCACCCAAATTGGGGTATTGGAAACACTTCCTCCGTAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR GCA 72 bp TGGTTCTTTCCCCATCCTTTCACTGAATGTCTGTTATaGTCTGTAATCGACGTACTGAGCGAAAGTCCAGCT +
Preference number: 3 (lower is better)
Translates to: WFFPHPFTECLL*SVIDVLSESPA
Trigger: AGCTGGACTTTCGCTCAGTACGTCGATTACAGAGCATAACAGACATTCAGTGAAAGGATGGGGAAAGAACCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR GCA 72 bp CATCTTATTCCATGGTATCACCTGCACCCAGCACAATaGCAGAAGCTTCATAAAGGCAAGAAGACATGGAAC +
Preference number: 3 (lower is better)
Translates to: HLIPWYHLHPAQ*QKLHKGKKTWN
Trigger: GTTCCATGTCTTCTTGCCTTTATGAAGCTTCTGGCATTGTGCTGGGTGCAGGTGATACCATGGAATAAGATG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR GCA 72 bp ACTAGAACCACATCCATCTTATTCCATGGTATCACCTaGACCCAGCACAATGCCAGAAGCTTCATAAAGGCA +
Preference number: 3 (lower is better)
Translates to: TRTTSILFHGIT*TQHNARSFIKA
Trigger: TGCCTTTATGAAGCTTCTGGCATTGTGCTGGGTGCAGGTGATACCATGGAATAAGATGGATGTGGTTCTAGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR CCA 72 bp TCACTCAAGTTAGCACAAAAACCTAATTGCTCTCCTTaGGCGTTATCTTCCTTCCCCTCCAATTTATCCCCC +
Preference number: 3 (lower is better)
Translates to: SLKLAQKPNCSP*ALSSFPSNLSP
Trigger: GGGGGATAAATTGGAGGGGAAGGAAGATAACGCCCAAGGAGAGCAATTAGGTTTTTGTGCTAACTTGAGTGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR CCA 72 bp TTGGTCCTGTTTTCTACGTACTTTAATCACGTCTACTaGATTGCCCCCAGCAATCAGGTTGAGAAGGGTCTT +
Preference number: 3 (lower is better)
Translates to: LVLFSTYFNHVY*IAPSNQVEKGL
Trigger: AAGACCCTTCTCAACCTGATTGCTGGGGGCAATCCAGTAGACGTGATTAAAGTACGTAGAAAACAGGACCAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000561614.5
ENST00000565613.5
3UTR GCA 72 bp CCTCATTTCTCACTCAAGTTAGCACAAAAACCTAATTaGTCTCCTTGGGCGTTATCTTCCTTCCCCTCCAAT +
Preference number: 3 (lower is better)
Translates to: PHFSLKLAQKPN*SPWALSSFPSN
Trigger: ATTGGAGGGGAAGGAAGATAACGCCCAAGGAGAGCAATTAGGTTTTTGTGCTAACTTGAGTGAGAAATGAGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR CCA 72 bp GTTTCTTTCGCATTGCAATGCCATGCTCCCTGCTCTTaGTCCTGTTTTCTACGTACTTTAATCACGTCTACT +
Preference number: 3 (lower is better)
Translates to: VSFALQCHAPCS*SCFLRTLITST
Trigger: AGTAGACGTGATTAAAGTACGTAGAAAACAGGACCAAGAGCAGGGAGCATGGCATTGCAATGCGAAAGAAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000561614.5
ENST00000565613.5
3UTR-3UTR CAA 90 bp ACTGTCACTGGGTTGAACTGGTTTAACCATAACTATTCACCGAATAACCAGAAAAGGTCTCAGAAACACTaGGCAGAAGGAACACTGGTG +
Preference number: 3 (lower is better)
Translates to: TVTGLNWFNHNYSPNNQKRSQKH*AEGTLV
Trigger: CACCAGTGTTCCTTCTGCCAAGTGTTTCTGAGACCT...TTTCTGGTTATTCGGTGAATAGTTATGGTTAAACCAGTTCAACCCAGTGACAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR TCA 72 bp ACCACCAATAAAGAAATAAGTGGAACGGGCTTGGGGTaGCAAACACAGGAGGCTTTACCCACTTTTGTATTA +
Preference number: 3 (lower is better)
Translates to: TTNKEISGTGLG*QTQEALPTFVL
Trigger: TAATACAAAAGTGGGTAAAGCCTCCTGTGTTTGTCACCCCAAGCCCGTTCCACTTATTTCTTTATTGGTGGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR TCA 72 bp TCTAATGGCCCAAATGCAGATGAAGATGAAGGTCTCTaGACAGAAGATGCTCTTATAACTCCTCTCTTTGCC +
Preference number: 3 (lower is better)
Translates to: SNGPNADEDEGL*TEDALITPLFA
Trigger: GGCAAAGAGAGGAGTTATAAGAGCATCTTCTGTTCAGAGACCTTCATCTTCATCTGCATTTGGGCCATTAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR GCA 72 bp CTCCACTCTAAGCTCCCATATTCTAGTCATGCTAAATaGCTTAAAGTGCGCCTCAGAATGTATCCCATTTTC +
Preference number: 3 (lower is better)
Translates to: LHSKLPYSSHAK*LKVRLRMYPIF
Trigger: GAAAATGGGATACATTCTGAGGCGCACTTTAAGGCATTTAGCATGACTAGAATATGGGAGCTTAGAGTGGAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR GCA 72 bp GAATACCAATTATGTGTTAACCACTGTCCTAAGAGCTaGAGATACAGGAATAATGTGGTGTCTGCCCAGAGA +
Preference number: 3 (lower is better)
Translates to: EYQLCVNHCPKS*RYRNNVVSAQR
Trigger: TCTCTGGGCAGACACCACATTATTCCTGTATCTGCAGCTCTTAGGACAGTGGTTAACACATAATTGGTATTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR TCA 72 bp AAGATGGAAGATACTGAGTCTCTACGAGGAATGGTGTaGGAAACAAGAATATCACATAAAGCCAGGAGATGG +
Preference number: 3 (lower is better)
Translates to: KMEDTESLRGMV*ETRISHKARRW
Trigger: CCATCTCCTGGCTTTATGTGATATTCTTGTTTCTCACACCATTCCTCGTAGAGACTCAGTATCTTCCATCTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR CCA 72 bp GACAAATTCAAACAGAGGAGCATTCTACCAAATACCTaGCCATTATGCCTCAAACCTTTTCGGGTCATCAAA +
Preference number: 3 (lower is better)
Translates to: DKFKQRSILPNT*PLCLKPFRVIK
Trigger: TTTGATGACCCGAAAAGGTTTGAGGCATAATGGCCAGGTATTTGGTAGAATGCTCCTCTGTTTGAATTTGTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000567593.5
3UTR GCA 72 bp AAACAGAGGAGCATTCTACCAAATACCTGGCCATTATaGCTCAAACCTTTTCGGGTCATCAAAAACAAAGAA +
Preference number: 3 (lower is better)
Translates to: KQRSILPNTWPL*LKPFRVIKNKE
Trigger: TTCTTTGTTTTTGATGACCCGAAAAGGTTTGAGGCATAATGGCCAGGTATTTGGTAGAATGCTCCTCTGTTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000567593.5
3UTR CCA 72 bp AAGTGTGTGTGTCAGAAAGTTACTGGTGGGAAATTCTaGAAAGATAGTTGTGACTGTGGAAGCAACTATCTT +
Preference number: 3 (lower is better)
Translates to: KCVCQKVTGGKF*KDSCDCGSNYL
Trigger: AAGATAGTTGCTTCCACAGTCACAACTATCTTTCCAGAATTTCCCACCAGTAACTTTCTGACACACACACTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR CCA 72 bp GGAAAAAGATGGAAGATACTGAGTCTCTACGAGGAATaGTGTGAGAAACAAGAATATCACATAAAGCCAGGA +
Preference number: 3 (lower is better)
Translates to: GKRWKILSLYEE*CEKQEYHIKPG
Trigger: TCCTGGCTTTATGTGATATTCTTGTTTCTCACACCATTCCTCGTAGAGACTCAGTATCTTCCATCTTTTTCC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR TCA 72 bp GTGTCAGCCCAGAGAGCTTTCAGTCTACACATAACCTaGATTCCATGTATCATGAACTTGCTCATAAATTAT +
Preference number: 3 (lower is better)
Translates to: VSAQRAFSLHIT*IPCIMNLLINY
Trigger: ATAATTTATGAGCAAGTTCATGATACATGGAATTCAGGTTATGTGTAGACTGAAAGCTCTCTGGGCTGACAC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR TCA 72 bp GAATGTTGTGCTCTGTGGTCTTCATCCGAAAACACATaGTCCCAATCCAATTATGAGGAAAACAAGACAAAT +
Preference number: 3 (lower is better)
Translates to: ECCALWSSSENT*SQSNYEENKTN
Trigger: ATTTGTCTTGTTTTCCTCATAATTGGATTGGGATCATGTGTTTTCGGATGAAGACCACAGAGCACAACATTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000567593.5
3UTR TCA 72 bp AGGTATTTAAATAACTTACCTGACCATTGGGAGGGATaGAGAAACTTCAGAGCCACATTGCAATTAAAAAGC +
Preference number: 3 (lower is better)
Translates to: RYLNNLPDHWEG*RNFRATLQLKS
Trigger: GCTTTTTAATTGCAATGTGGCTCTGAAGTTTCTTCATCCCTCCCAATGGTCAGGTAAGTTATTTAAATACCT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR TCA 72 bp GTCTTCATCCGAAAACACATGATCCCAATCCAATTATaGGGAAAACAAGACAAATTCAAACAGAGGAGCATT +
Preference number: 3 (lower is better)
Translates to: VFIRKHMIPIQL*GKQDKFKQRSI
Trigger: AATGCTCCTCTGTTTGAATTTGTCTTGTTTTCCTCATAATTGGATTGGGATCATGTGTTTTCGGATGAAGAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000567593.5
3UTR GCA 72 bp GAGGAACAGACATCTTCCAAAAACCTACTACAAATTTaGTACTTGTCAGTGAAATGTAAGGATTTAACATCA +
Preference number: 3 (lower is better)
Translates to: EEQTSSKNLLQI*YLSVKCKDLTS
Trigger: TGATGTTAAATCCTTACATTTCACTGACAAGTAGCAAATTTGTAGTAGGTTTTTGGAAGATGTCTGTTCCTC
35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR CCA 72 bp TTGCAGTTCTCCTTATCTTCAGGATGTATCACCTTCTaGAGATGTAAAGTCAAAATATTGTATTTGAACAAC +
Preference number: 3 (lower is better)
Translates to: LQFSLSSGCITF*RCKVKILYLNN
Trigger: GTTGTTCAAATACAATATTTTGACTTTACATCTCCAGAAGGTGATACATCCTGAAGATAAGGAGAACTGCAA
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR TCA 90 bp TGGTCCTGTTTTCTACGTACTGTCGTCCTAGCTACTCAGGAGGCTGAGGTGGGAGACGCCGAAACCCAGTaGCGCCCTCCACCGCTCCAC +
Preference number: 4 (lower is better)
Translates to: WSCFLRTVVLATQEAEVGDAETQ*RPPPLH
Trigger: GTGGAGCGGTGGAGGGCGTCACTGGGTTTCGGCGTC...TCCCACCTCAGCCTCCTGAGTAGCTAGGACGACAGTACGTAGAAAACAGGACCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000486645.5
ENST00000565925.5
ENST00000570195.5
CDS-3UTR TCA 90 bp GCTGGTAAAGGGGAGACAGTACTAAACGCCCTGCCCAACAAATACTCAGAATCCGACGCCGAAACCCAGTaGCGCCCTCCACCGCTCCAC +
Preference number: 4 (lower is better)
Translates to: AGKGETVLNALPNKYSESDAETQ*RPPPLH
Trigger: GTGGAGCGGTGGAGGGCGTCACTGGGTTTCGGCGTC...GGATTCTGAGTATTTGTTGGGCAGGGCGTTTAGTACTGTCTCCCCTTTACCAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000219400.8
ENST00000486645.5
ENST00000570086.5
ENST00000570195.5
CDS-3UTR TCA 90 bp GCTGGTAAAGGGGAGACAGTACTAAACGCCCTGCCCAACAAATACTCAGAATCCCCACACCGGGAGAACTaGAGCGGCAGTAGCCGGCGG +
Preference number: 4 (lower is better)
Translates to: AGKGETVLNALPNKYSESPHREN*SGSSRR
Trigger: CCGCCGGCTACTGCCGCTTCAGTTCTCCCGGTGTGG...GGATTCTGAGTATTTGTTGGGCAGGGCGTTTAGTACTGTCTCCCCTTTACCAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000219400.8
ENST00000486645.5
ENST00000570086.5
ENST00000570195.5
CDS-3UTR GCA 90 bp TCCTCTGGAGGATTAAAAAGTTTCTTTCGCATTGCAATGCCATGCTCCCTGCTCTCCACCGCTCCACCGTaGTCCCGGCTCCTCGCCCCC +
Preference number: 4 (lower is better)
Translates to: SSGGLKSFFRIAMPCSLLSTAPP*SRLLAP
Trigger: GGGGGCGAGGAGCCGGGAGCACGGTGGAGCGGTGGA...GAGCAGGGAGCATGGCATTGCAATGCGAAAGAAACTTTTTAATCCTCCAGAGGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000486645.5
ENST00000568228.5
CDS-3UTR TCA 90 bp TCCTCTGGAGGATTAAAAAGTTTCTTTCGCATTGCAATGCCATGCTCCCTGCTCGACGCCGAAACCCAGTaGCGCCCTCCACCGCTCCAC +
Preference number: 4 (lower is better)
Translates to: SSGGLKSFFRIAMPCSLLDAETQ*RPPPLH
Trigger: GTGGAGCGGTGGAGGGCGTCACTGGGTTTCGGCGTC...GAGCAGGGAGCATGGCATTGCAATGCGAAAGAAACTTTTTAATCCTCCAGAGGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENST00000486645.5
ENST00000565925.5
ENST00000568228.5
ENST00000570086.5
ENST00000570195.5
CDS-3UTR GCA 90 bp CCCCACTCTCCCTCCAGCTTCTTCGGCTTCCACTGCATATGGGAATTCAAAATACCAGGCATGGTAGCCTaGGCCTGTAGCCCCAGCTAC +
Preference number: 4 (lower is better)
Translates to: PHSPSSFFGFHCIWEFKIPGMVA*ACSPSY
Trigger: GTAGCTGGGGCTACAGGCGCAGGCTACCATGCCTGG...TATTTTGAATTCCCATATGCAGTGGAAGCCGAAGAAGCTGGAGGGAGAGTGGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR TCA 90 bp CTACGGAGGAAGTGTTTCCAATACCCCAATTTGGGTGCACTTGAGAGAAAAACACCACACCGGGAGAACTaGAGCGGCAGTAGCCGGCGG +
Preference number: 4 (lower is better)
Translates to: LRRKCFQYPNLGALERKTPHREN*SGSSRR
Trigger: CCGCCGGCTACTGCCGCTTCAGTTCTCCCGGTGTGG...TGTTTTTCTCTCAAGTGCACCCAAATTGGGGTATTGGAAACACTTCCTCCGTAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR TCA 90 bp CTACGGAGGAAGTGTTTCCAATACCCCAATTTGGGTGCACTTGAGAGAAAAACAGGGGCCGGCTTGGGATaGGTTCTAGAGGCCTGGCCC +
Preference number: 4 (lower is better)
Translates to: LRRKCFQYPNLGALERKTGAGLG*VLEAWP
Trigger: GGGCCAGGCCTCTAGAACTCATCCCAAGCCGGCCCC...TGTTTTTCTCTCAAGTGCACCCAAATTGGGGTATTGGAAACACTTCCTCCGTAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR TCA 90 bp GCTGGTAAAGGGGAGACAGTACTAAACGCCCTGCCCAACAAATACTCAGAATCCTCCTGTCCTCCCATGTaGCCAGCTGCCGGTGAGATC +
Preference number: 4 (lower is better)
Translates to: AGKGETVLNALPNKYSESSCPPM*PAAGEI
Trigger: GATCTCACCGGCAGCTGGTCACATGGGAGGACAGGA...GGATTCTGAGTATTTGTTGGGCAGGGCGTTTAGTACTGTCTCCCCTTTACCAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR GCA 90 bp TGGTCCTGTTTTCTACGTACTGTCGTCCTAGCTACTCAGGAGGCTGAGGTGGGACGCATTGCAATGCCATaGTCCCTGCTCTTGGTCCTG +
Preference number: 4 (lower is better)
Translates to: WSCFLRTVVLATQEAEVGRIAMP*SLLLVL
Trigger: CAGGACCAAGAGCAGGGAGCATGGCATTGCAATGCG...TCCCACCTCAGCCTCCTGAGTAGCTAGGACGACAGTACGTAGAAAACAGGACCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000486645.5
ENST00000562713.3
ENST00000565925.5
ENST00000567593.5
ENST00000570195.5
3UTR CAA 72 bp GCCCACCTGTGTCCTCAGCTCATGCCACCCTCCCCCTaGCTCACTGTGCTCCAGTTCACTAGCATTTTATTT +
Preference number: 4 (lower is better)
Translates to: AHLCPQLMPPSP*LTVLQFTSILF
Trigger: AAATAAAATGCTAGTGAACTGGAGCACAGTGAGCAAGGGGGAGGGTGGCATGAGCTGAGGACACAGGTGGGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR CCA 90 bp AACGGTATCAGCCCTAGTGATTTGGTGCCTTCTACCAAACTACGGAGGAAGTGTAAGGCCTGTGTGTTCTaGCCCTGCCCACCTGTGTCC +
Preference number: 4 (lower is better)
Translates to: NGISPSDLVPSTKLRRKCKACVF*PCPPVS
Trigger: GGACACAGGTGGGCAGGGCCAGAACACACAGGCCTT...ACACTTCCTCCGTAGTTTGGTAGAAGGCACCAAATCACTAGGGCTGATACCGTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR CCA 90 bp CCCCACTCTCCCTCCAGCTTCTTCGGCTTCCACTGCATATGGGAATTCAAAATAAGCCACCCCTGGGACTaGCTTCCTCTATGGAAAGGC +
Preference number: 4 (lower is better)
Translates to: PHSPSSFFGFHCIWEFKISHPWD*LPLWKG
Trigger: GCCTTTCCATAGAGGAAGCCAGTCCCAGGGGTGGCT...TATTTTGAATTCCCATATGCAGTGGAAGCCGAAGAAGCTGGAGGGAGAGTGGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR CAA 72 bp CTGGGGCCCCACTCAAACGGTATCAGCCCTAGTGATTaGGTGCCTTCTACCAAACTACGGAGGAAGTGTTTC +
Preference number: 4 (lower is better)
Translates to: LGPHSNGISPSD*VPSTKLRRKCF
Trigger: GAAACACTTCCTCCGTAGTTTGGTAGAAGGCACCAAATCACTAGGGCTGATACCGTTTGAGTGGGGCCCCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR TCA 90 bp CCCCACTCTCCCTCCAGCTTCTTCGGCTTCCACTGCATATGGGAATTCAAAATAGCAGCTGGAAGCTGCTaGCTTCCAGATTGTCACAGG +
Preference number: 4 (lower is better)
Translates to: PHSPSSFFGFHCIWEFKIAAGSC*LPDCHR
Trigger: CCTGTGACAATCTGGAAGTCAGCAGCTTCCAGCTGC...TATTTTGAATTCCCATATGCAGTGGAAGCCGAAGAAGCTGGAGGGAGAGTGGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR TCA 90 bp TGGTCCTGTTTTCTACGTACTGTCGTCCTAGCTACTCAGGAGGCTGAGGTGGGAGCACTCCAGCTTAGGTaGCAGAGCAAGAACCTCATT +
Preference number: 4 (lower is better)
Translates to: WSCFLRTVVLATQEAEVGALQLR*QSKNLI
Trigger: AATGAGGTTCTTGCTCTGTCACCTAAGCTGGAGTGC...TCCCACCTCAGCCTCCTGAGTAGCTAGGACGACAGTACGTAGAAAACAGGACCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000562713.3
ENST00000565925.5
ENST00000567593.5
ENST00000570195.5
CDS-3UTR GCA 90 bp TGGTCCTGTTTTCTACGTACTGTCGTCCTAGCTACTCAGGAGGCTGAGGTGGGATCTTTCGCATTGCAATaGCATGCTCCCTGCTCTTGG +
Preference number: 4 (lower is better)
Translates to: WSCFLRTVVLATQEAEVGSFALQ*HAPCSW
Trigger: CCAAGAGCAGGGAGCATGGCATTGCAATGCGAAAGA...TCCCACCTCAGCCTCCTGAGTAGCTAGGACGACAGTACGTAGAAAACAGGACCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000486645.5
ENST00000562713.3
ENST00000565925.5
ENST00000567593.5
ENST00000570195.5
CDS-3UTR GCA 90 bp AACGGTATCAGCCCTAGTGATTTGGTGCCTTCTACCAAACTACGGAGGAAGTGTTGTGTCCTCAGCTCATaGCACCCTCCCCCTTGCTCA +
Preference number: 4 (lower is better)
Translates to: NGISPSDLVPSTKLRRKCCVLSS*HPPPCS
Trigger: TGAGCAAGGGGGAGGGTGGCATGAGCTGAGGACACA...ACACTTCCTCCGTAGTTTGGTAGAAGGCACCAAATCACTAGGGCTGATACCGTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR GCA 90 bp TGGTCCTGTTTTCTACGTACTGTCGTCCTAGCTACTCAGGAGGCTGAGGTGGGAGATGGATCACAGCAGTaGAACCTGCATGATGGGATC +
Preference number: 4 (lower is better)
Translates to: WSCFLRTVVLATQEAEVGDGSQQ*NLHDGI
Trigger: GATCCCATCATGCAGGTTGCACTGCTGTGATCCATC...TCCCACCTCAGCCTCCTGAGTAGCTAGGACGACAGTACGTAGAAAACAGGACCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000562713.3
CDS-3UTR CCA 90 bp GCTGGTAAAGGGGAGACAGTACTAAACGCCCTGCCCAACAAATACTCAGAATCCCTTAGAGGACAGAAATaGCCCCACAGGCCTCTAGCC +
Preference number: 4 (lower is better)
Translates to: AGKGETVLNALPNKYSESLRGQK*PHRPLA
Trigger: GGCTAGAGGCCTGTGGGGCCATTTCTGTCCTCTAAG...GGATTCTGAGTATTTGTTGGGCAGGGCGTTTAGTACTGTCTCCCCTTTACCAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR CCA 90 bp GCTGGTAAAGGGGAGACAGTACTAAACGCCCTGCCCAACAAATACTCAGAATCCCTTGAAGCCAGGAGGTaGAAGTTGCAGCGAGCTGAG +
Preference number: 4 (lower is better)
Translates to: AGKGETVLNALPNKYSESLEARR*KLQRAE
Trigger: CTCAGCTCGCTGCAACTTCCACCTCCTGGCTTCAAG...GGATTCTGAGTATTTGTTGGGCAGGGCGTTTAGTACTGTCTCCCCTTTACCAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR TCA 90 bp GCTGGTAAAGGGGAGACAGTACTAAACGCCCTGCCCAACAAATACTCAGAATCCGCTGAGTCTGTTCCCTaGCACCTGACAAGATCAAGC +
Preference number: 4 (lower is better)
Translates to: AGKGETVLNALPNKYSESAESVP*HLTRSS
Trigger: GCTTGATCTTGTCAGGTGTCAGGGAACAGACTCAGC...GGATTCTGAGTATTTGTTGGGCAGGGCGTTTAGTACTGTCTCCCCTTTACCAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR TCA 90 bp GCTGGTAAAGGGGAGACAGTACTAAACGCCCTGCCCAACAAATACTCAGAATCCAGGATGTGGAGAAACTaGAACTCCTGCGCACTGTGG +
Preference number: 4 (lower is better)
Translates to: AGKGETVLNALPNKYSESRMWRN*NSCALW
Trigger: CCACAGTGCGCAGGAGTTTCAGTTTCTCCACATCCT...GGATTCTGAGTATTTGTTGGGCAGGGCGTTTAGTACTGTCTCCCCTTTACCAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000564249.5
CDS-3UTR GCA 90 bp TGGTCCTGTTTTCTACGTACTGTCGTCCTAGCTACTCAGGAGGCTGAGGTGGGACAATGCCATGCTCCCTaGTCTTGGTCCTGTTTTCTA +
Preference number: 4 (lower is better)
Translates to: WSCFLRTVVLATQEAEVGQCHAP*SWSCFL
Trigger: TAGAAAACAGGACCAAGAGCAGGGAGCATGGCATTG...TCCCACCTCAGCCTCCTGAGTAGCTAGGACGACAGTACGTAGAAAACAGGACCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENST00000486645.5
ENST00000562713.3
ENST00000565925.5
ENST00000567593.5
ENST00000570195.5
CDS-3UTR GCA 90 bp TTAATCACGTCTACTGGATTGCCCCCAGCAATCAGGTTGAGAAGGGTCTTAAGGCGCATTGCAATGCCATaGTCCCTGCTCTTGGTCCTG +
Preference number: 4 (lower is better)
Translates to: LITSTGLPPAIRLRRVLRRIAMP*SLLLVL
Trigger: CAGGACCAAGAGCAGGGAGCATGGCATTGCAATGCG...CCTTAAGACCCTTCTCAACCTGATTGCTGGGGGCAATCCAGTAGACGTGATTAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000561614.5
ENST00000565613.5
CDS-3UTR GCA 90 bp GCTGGTAAAGGGGAGACAGTACTAAACGCCCTGCCCAACAAATACTCAGAATCCAAGACATGGAACCTCTaGACCTCCCAACCCCACTCT +
Preference number: 4 (lower is better)
Translates to: AGKGETVLNALPNKYSESKTWNL*TSQPHS
Trigger: AGAGTGGGGTTGGGAGGTGCAGAGGTTCCATGTCTT...GGATTCTGAGTATTTGTTGGGCAGGGCGTTTAGTACTGTCTCCCCTTTACCAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR GCA 90 bp TGGTCCTGTTTTCTACGTACTGTCGTCCTAGCTACTCAGGAGGCTGAGGTGGGACACAGCAGTGCAACCTaGATGATGGGATCAACAGTA +
Preference number: 4 (lower is better)
Translates to: WSCFLRTVVLATQEAEVGHSSAT*MMGSTV
Trigger: TACTGTTGATCCCATCATGCAGGTTGCACTGCTGTG...TCCCACCTCAGCCTCCTGAGTAGCTAGGACGACAGTACGTAGAAAACAGGACCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000562713.3
CDS-3UTR CCA 90 bp TGGTCCTGTTTTCTACGTACTGTCGTCCTAGCTACTCAGGAGGCTGAGGTGGGACATGCTCCCTGCTCTTaGTCCTGTTTTCTACGTACT +
Preference number: 4 (lower is better)
Translates to: WSCFLRTVVLATQEAEVGHAPCS*SCFLRT
Trigger: AGTACGTAGAAAACAGGACCAAGAGCAGGGAGCATG...TCCCACCTCAGCCTCCTGAGTAGCTAGGACGACAGTACGTAGAAAACAGGACCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENST00000486645.5
ENST00000562713.3
ENST00000565925.5
ENST00000567593.5
ENST00000570195.5
CDS-3UTR CCA 90 bp GACATCTCCAAAGGAAGTCCAGATGGTCCCTGTCGTCCTAGCTACTCAGGAGGCTTTAATCACGTCTACTaGATTGCCCCCAGCAATCAG +
Preference number: 4 (lower is better)
Translates to: DISKGSPDGPCRPSYSGGFNHVY*IAPSNQ
Trigger: CTGATTGCTGGGGGCAATCCAGTAGACGTGATTAAA...GCCTCCTGAGTAGCTAGGACGACAGGGACCATCTGGACTTCCTTTGGAGATGTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000565613.5
CDS-3UTR TCA 90 bp GCTGGTAAAGGGGAGACAGTACTAAACGCCCTGCCCAACAAATACTCAGAATCCGGAACACTGGTGAAATaGCTGCTAGAATTGGGCACG +
Preference number: 4 (lower is better)
Translates to: AGKGETVLNALPNKYSESGTLVK*LLELGT
Trigger: CGTGCCCAATTCTAGCAGTCATTTCACCAGTGTTCC...GGATTCTGAGTATTTGTTGGGCAGGGCGTTTAGTACTGTCTCCCCTTTACCAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR TCA 90 bp CTACGGAGGAAGTGTTTCCAATACCCCAATTTGGGTGCACTTGAGAGAAAAACAGCCACCTGCTCCATCTaGTACCAGAGGCAGGAGACT +
Preference number: 4 (lower is better)
Translates to: LRRKCFQYPNLGALERKTATCSI*YQRQET
Trigger: AGTCTCCTGCCTCTGGTATCAGATGGAGCAGGTGGC...TGTTTTTCTCTCAAGTGCACCCAAATTGGGGTATTGGAAACACTTCCTCCGTAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR TCA 90 bp AACGGTATCAGCCCTAGTGATTTGGTGCCTTCTACCAAACTACGGAGGAAGTGTGCCCACAGGAAGGTCTaGAGGGGCTGGAACAATTTA +
Preference number: 4 (lower is better)
Translates to: NGISPSDLVPSTKLRRKCAHRKV*RGWNNL
Trigger: TAAATTGTTCCAGCCCCTTCAGACCTTCCTGTGGGC...ACACTTCCTCCGTAGTTTGGTAGAAGGCACCAAATCACTAGGGCTGATACCGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR TCA 90 bp CTACGGAGGAAGTGTTTCCAATACCCCAATTTGGGTGCACTTGAGAGAAAAACAGCCACCCCACACGGCTaGGATTCTGCGTTGCTAACA +
Preference number: 4 (lower is better)
Translates to: LRRKCFQYPNLGALERKTATPHG*DSALLT
Trigger: TGTTAGCAACGCAGAATCTCAGCCGTGTGGGGTGGC...TGTTTTTCTCTCAAGTGCACCCAAATTGGGGTATTGGAAACACTTCCTCCGTAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR TCA 90 bp GCTGGTAAAGGGGAGACAGTACTAAACGCCCTGCCCAACAAATACTCAGAATCCGCACTCCAGCTTAGGTaGCAGAGCAAGAACCTCATT +
Preference number: 4 (lower is better)
Translates to: AGKGETVLNALPNKYSESALQLR*QSKNLI
Trigger: AATGAGGTTCTTGCTCTGTCACCTAAGCTGGAGTGC...GGATTCTGAGTATTTGTTGGGCAGGGCGTTTAGTACTGTCTCCCCTTTACCAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000570195.5
CDS-3UTR GCA 90 bp TCCTCTGGAGGATTAAAAAGTTTCTTTCGCATTGCAATGCCATGCTCCCTGCTCCGCATTGCAATGCCATaGTCCCTGCTCTTGGTCCTG +
Preference number: 4 (lower is better)
Translates to: SSGGLKSFFRIAMPCSLLRIAMP*SLLLVL
Trigger: CAGGACCAAGAGCAGGGAGCATGGCATTGCAATGCG...GAGCAGGGAGCATGGCATTGCAATGCGAAAGAAACTTTTTAATCCTCCAGAGGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENST00000486645.5
ENST00000561614.5
ENST00000565925.5
ENST00000567593.5
ENST00000568228.5
ENST00000570086.5
ENST00000570195.5
CDS-3UTR GCA 90 bp TGGTCCTGTTTTCTACGTACTGTCGTCCTAGCTACTCAGGAGGCTGAGGTGGGAAAGTTTCTTTCGCATTaGAATGCCATGCTCCCTGCT +
Preference number: 4 (lower is better)
Translates to: WSCFLRTVVLATQEAEVGKFLSH*NAMLPA
Trigger: AGCAGGGAGCATGGCATTGCAATGCGAAAGAAACTT...TCCCACCTCAGCCTCCTGAGTAGCTAGGACGACAGTACGTAGAAAACAGGACCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000486645.5
ENST00000562713.3
ENST00000565925.5
ENST00000567593.5
ENST00000570195.5
CDS-3UTR GCA 90 bp TCTCAGGAAAACCTTGGCCTAAGTTCTTCAGCTTCCAAGAGATGGTCTCTTATGAGCCCCTGCTGTGACTaGAGCTGGAAGCTGCTGACT +
Preference number: 4 (lower is better)
Translates to: SQENLGLSSSASKRWSLMSPCCD*SWKLLT
Trigger: AGTCAGCAGCTTCCAGCTGCAGTCACAGCAGGGGCT...CATAAGAGACCATCTCTTGGAAGCTGAAGAACTTAGGCCAAGGTTTTCCTGAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR GCA 90 bp AACGGTATCAGCCCTAGTGATTTGGTGCCTTCTACCAAACTACGGAGGAAGTGTAAGCATGGAATAAGATaGAGCCACCCCTGGGACTGG +
Preference number: 4 (lower is better)
Translates to: NGISPSDLVPSTKLRRKCKHGIR*SHPWDW
Trigger: CCAGTCCCAGGGGTGGCTGCATCTTATTCCATGCTT...ACACTTCCTCCGTAGTTTGGTAGAAGGCACCAAATCACTAGGGCTGATACCGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR GCA 90 bp AACGGTATCAGCCCTAGTGATTTGGTGCCTTCTACCAAACTACGGAGGAAGTGTCCAGGAGGTGGAAGTTaGAGCGAGCTGAGATCATAC +
Preference number: 4 (lower is better)
Translates to: NGISPSDLVPSTKLRRKCPGGGS*SELRSY
Trigger: GTATGATCTCAGCTCGCTGCAACTTCCACCTCCTGG...ACACTTCCTCCGTAGTTTGGTAGAAGGCACCAAATCACTAGGGCTGATACCGTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR GCA 90 bp GCTGGTAAAGGGGAGACAGTACTAAACGCCCTGCCCAACAAATACTCAGAATCCCTAAGGCACGAGAATTaGTTGAAGCCAGGAGGTGGA +
Preference number: 4 (lower is better)
Translates to: AGKGETVLNALPNKYSESLRHEN*LKPGGG
Trigger: TCCACCTCCTGGCTTCAAGCAATTCTCGTGCCTTAG...GGATTCTGAGTATTTGTTGGGCAGGGCGTTTAGTACTGTCTCCCCTTTACCAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR GCA 90 bp TCTCAGGAAAACCTTGGCCTAAGTTCTTCAGCTTCCAAGAGATGGTCTCTTATGCCCAGGCAGCAAGGTTaGAGGGAGCCAAGATCACAC +
Preference number: 4 (lower is better)
Translates to: SQENLGLSSSASKRWSLMPRQQG*REPRSH
Trigger: GTGTGATCTTGGCTCCCTGCAACCTTGCTGCCTGGG...CATAAGAGACCATCTCTTGGAAGCTGAAGAACTTAGGCCAAGGTTTTCCTGAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR GCA 90 bp CTACGGAGGAAGTGTTTCCAATACCCCAATTTGGGTGCACTTGAGAGAAAAACACTCGGCCTCCCAAAGTaGTGGGTTTACAGGCGTGAG +
Preference number: 4 (lower is better)
Translates to: LRRKCFQYPNLGALERKTLGLPK*WVYRRE
Trigger: CTCACGCCTGTAAACCCAGCACTTTGGGAGGCCGAG...TGTTTTTCTCTCAAGTGCACCCAAATTGGGGTATTGGAAACACTTCCTCCGTAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR CCA 90 bp GCTGGTAAAGGGGAGACAGTACTAAACGCCCTGCCCAACAAATACTCAGAATCCTGTCCAGGAGTTAACTaGCACCTCGAGTGGACACAT +
Preference number: 4 (lower is better)
Translates to: AGKGETVLNALPNKYSESCPGVN*HLEWTH
Trigger: ATGTGTCCACTCGAGGTGCCAGTTAACTCCTGGACA...GGATTCTGAGTATTTGTTGGGCAGGGCGTTTAGTACTGTCTCCCCTTTACCAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR CCA 90 bp GCTGGTAAAGGGGAGACAGTACTAAACGCCCTGCCCAACAAATACTCAGAATCCGACTGGCTTCCTCTATaGAAAGGCAGGATGTACAGG +
Preference number: 4 (lower is better)
Translates to: AGKGETVLNALPNKYSESDWLPL*KGRMYR
Trigger: CCTGTACATCCTGCCTTTCCATAGAGGAAGCCAGTC...GGATTCTGAGTATTTGTTGGGCAGGGCGTTTAGTACTGTCTCCCCTTTACCAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR CAA 72 bp AAAGTTTCATCCTGCTCTTATGGTCAGCTACTGACATaGGCCTACAGGGCCTTAGCTGGCATCTGCATGCTG +
Preference number: 4 (lower is better)
Translates to: KVSSCSYGQLLT*AYRALAGICML
Trigger: CAGCATGCAGATGCCAGCTAAGGCCCTGTAGGCCAATGTCAGTAGCTGACCATAAGAGCAGGATGAAACTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR TCA 90 bp TCTCAGGAAAACCTTGGCCTAAGTTCTTCAGCTTCCAAGAGATGGTCTCTTATGGGCTGGAGAATCACTTaGATCCGGGAGGTGGAGGTT +
Preference number: 4 (lower is better)
Translates to: SQENLGLSSSASKRWSLMGWRIT*IREVEV
Trigger: AACCTCCACCTCCCGGATTCAAGTGATTCTCCAGCC...CATAAGAGACCATCTCTTGGAAGCTGAAGAACTTAGGCCAAGGTTTTCCTGAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR TCA 90 bp TCTCAGGAAAACCTTGGCCTAAGTTCTTCAGCTTCCAAGAGATGGTCTCTTATGCTGTTCCCTGACACCTaGCAAGATCAAGCCCCTGCT +
Preference number: 4 (lower is better)
Translates to: SQENLGLSSSASKRWSLMLFPDT*QDQAPA
Trigger: AGCAGGGGCTTGATCTTGTCAGGTGTCAGGGAACAG...CATAAGAGACCATCTCTTGGAAGCTGAAGAACTTAGGCCAAGGTTTTCCTGAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR TCA 90 bp CCCCACTCTCCCTCCAGCTTCTTCGGCTTCCACTGCATATGGGAATTCAAAATAAAACAGATTTCACTCTaGTCTACAGCAGGCTGGGGA +
Preference number: 4 (lower is better)
Translates to: PHSPSSFFGFHCIWEFKIKQISL*STAGWG
Trigger: TCCCCAGCCTGCTGTAGATCAGAGTGAAATCTGTTT...TATTTTGAATTCCCATATGCAGTGGAAGCCGAAGAAGCTGGAGGGAGAGTGGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR TCA 90 bp AACGGTATCAGCCCTAGTGATTTGGTGCCTTCTACCAAACTACGGAGGAAGTGTGACCATTGGGAGGGATaGAGAAACTTCAGAGCCACA +
Preference number: 4 (lower is better)
Translates to: NGISPSDLVPSTKLRRKCDHWEG*RNFRAT
Trigger: TGTGGCTCTGAAGTTTCTTCATCCCTCCCAATGGTC...ACACTTCCTCCGTAGTTTGGTAGAAGGCACCAAATCACTAGGGCTGATACCGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR TCA 90 bp TCCTCTGGAGGATTAAAAAGTTTCTTTCGCATTGCAATGCCATGCTCCCTGCTCAGGATGTGGAGAAACTaGAACTCCTGCGCACTGTGG +
Preference number: 4 (lower is better)
Translates to: SSGGLKSFFRIAMPCSLLRMWRN*NSCALW
Trigger: CCACAGTGCGCAGGAGTTTCAGTTTCTCCACATCCT...GAGCAGGGAGCATGGCATTGCAATGCGAAAGAAACTTTTTAATCCTCCAGAGGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000568228.5
CDS-3UTR GCA 90 bp CTACGGAGGAAGTGTTTCCAATACCCCAATTTGGGTGCACTTGAGAGAAAAACACGCATTGCAATGCCATaGTCCCTGCTCTTGGTCCTG +
Preference number: 4 (lower is better)
Translates to: LRRKCFQYPNLGALERKTRIAMP*SLLLVL
Trigger: CAGGACCAAGAGCAGGGAGCATGGCATTGCAATGCG...TGTTTTTCTCTCAAGTGCACCCAAATTGGGGTATTGGAAACACTTCCTCCGTAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR GCA 90 bp TTTTCTACGTACTTTAATCACGTCTACTGGATTGCCCCCAGCAATCAGGTTGAGCGCATTGCAATGCCATaGTCCCTGCTCTTGGTCCTG +
Preference number: 4 (lower is better)
Translates to: FSTYFNHVYWIAPSNQVERIAMP*SLLLVL
Trigger: CAGGACCAAGAGCAGGGAGCATGGCATTGCAATGCG...CTCAACCTGATTGCTGGGGGCAATCCAGTAGACGTGATTAAAGTACGTAGAAAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000561614.5
ENST00000565613.5
CDS-3UTR GCA 90 bp TGGATTGCCCCCAGCAATCAGGTTGAGAAGGGTCTTAAGGGAAACTCTTCAGAATCTTTCGCATTGCAATaGCATGCTCCCTGCTCTTGG +
Preference number: 4 (lower is better)
Translates to: WIAPSNQVEKGLKGNSSESFALQ*HAPCSW
Trigger: CCAAGAGCAGGGAGCATGGCATTGCAATGCGAAAGA...TTCTGAAGAGTTTCCCTTAAGACCCTTCTCAACCTGATTGCTGGGGGCAATCCA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000561614.5
ENST00000565613.5
CDS-3UTR GCA 90 bp AACGGTATCAGCCCTAGTGATTTGGTGCCTTCTACCAAACTACGGAGGAAGTGTGCCTTAGCTGGCATCTaGATGCTGACATCTCCCAAT +
Preference number: 4 (lower is better)
Translates to: NGISPSDLVPSTKLRRKCALAGI*MLTSPN
Trigger: ATTGGGAGATGTCAGCATGCAGATGCCAGCTAAGGC...ACACTTCCTCCGTAGTTTGGTAGAAGGCACCAAATCACTAGGGCTGATACCGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR GCA 90 bp GCTGGTAAAGGGGAGACAGTACTAAACGCCCTGCCCAACAAATACTCAGAATCCGCCCTAGTGATTTGGTaGCTTCTACCAAACTACGGA +
Preference number: 4 (lower is better)
Translates to: AGKGETVLNALPNKYSESALVIW*LLPNYG
Trigger: TCCGTAGTTTGGTAGAAGGCACCAAATCACTAGGGC...GGATTCTGAGTATTTGTTGGGCAGGGCGTTTAGTACTGTCTCCCCTTTACCAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR CCA 90 bp GCTGGTAAAGGGGAGACAGTACTAAACGCCCTGCCCAACAAATACTCAGAATCCCATGCTCCCTGCTCTTaGTCCTGTTTTCTACGTACT +
Preference number: 4 (lower is better)
Translates to: AGKGETVLNALPNKYSESHAPCS*SCFLRT
Trigger: AGTACGTAGAAAACAGGACCAAGAGCAGGGAGCATG...GGATTCTGAGTATTTGTTGGGCAGGGCGTTTAGTACTGTCTCCCCTTTACCAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENST00000219400.8
ENST00000486645.5
ENST00000561614.5
ENST00000564249.5
ENST00000570086.5
ENST00000570195.5
CDS-3UTR CCA 90 bp ACTGTCACTGGGTTGAACTGGTTTAACCATAACTATTCACCGAATAACCAGAAACCCTGCCCCATCAGCTaGGGCCCCACTCAAACGGTA +
Preference number: 4 (lower is better)
Translates to: TVTGLNWFNHNYSPNNQKPCPIS*GPTQTV
Trigger: TACCGTTTGAGTGGGGCCCCAGCTGATGGGGCAGGG...TTTCTGGTTATTCGGTGAATAGTTATGGTTAAACCAGTTCAACCCAGTGACAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR CCA 90 bp TCCTCTGGAGGATTAAAAAGTTTCTTTCGCATTGCAATGCCATGCTCCCTGCTCCCATATCCATTAGGATaGCTACTGCCGACTCGTGGC +
Preference number: 4 (lower is better)
Translates to: SSGGLKSFFRIAMPCSLLPYPLG*LLPTRG
Trigger: GCCACGAGTCGGCAGTAGCCATCCTAATGGATATGG...GAGCAGGGAGCATGGCATTGCAATGCGAAAGAAACTTTTTAATCCTCCAGAGGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000565925.5
3UTR CAA 72 bp AGTTTCTTTCGCATTGCAATGCCATGCTCCCTGCTCTaGGTCCTGTTTTCTACGTACTGTCGTCCTAGCTAC +
Preference number: 4 (lower is better)
Translates to: SFFRIAMPCSLL*VLFSTYCRPSY
Trigger: GTAGCTAGGACGACAGTACGTAGAAAACAGGACCAAGAGCAGGGAGCATGGCATTGCAATGCGAAAGAAACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000486645.5
ENST00000562713.3
ENST00000565925.5
ENST00000567593.5
ENST00000570195.5
CDS-3UTR TCA 90 bp TCTCAGGAAAACCTTGGCCTAAGTTCTTCAGCTTCCAAGAGATGGTCTCTTATGCTTATGGTCAGCTACTaGCATTGGCCTACAGGGCCT +
Preference number: 4 (lower is better)
Translates to: SQENLGLSSSASKRWSLMLMVSY*HWPTGP
Trigger: AGGCCCTGTAGGCCAATGTCAGTAGCTGACCATAAG...CATAAGAGACCATCTCTTGGAAGCTGAAGAACTTAGGCCAAGGTTTTCCTGAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR TCA 90 bp CTACGGAGGAAGTGTTTCCAATACCCCAATTTGGGTGCACTTGAGAGAAAAACAGAAGTTGCAGCGAGCTaGGATCATACCACTGCACTC +
Preference number: 4 (lower is better)
Translates to: LRRKCFQYPNLGALERKTEVAAS*DHTTAL
Trigger: GAGTGCAGTGGTATGATCTCAGCTCGCTGCAACTTC...TGTTTTTCTCTCAAGTGCACCCAAATTGGGGTATTGGAAACACTTCCTCCGTAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR TCA 90 bp TCTCAGGAAAACCTTGGCCTAAGTTCTTCAGCTTCCAAGAGATGGTCTCTTATGGGCACGAGAATTGCTTaGAGCCAGGAGGTGGAAGTT +
Preference number: 4 (lower is better)
Translates to: SQENLGLSSSASKRWSLMGTRIA*SQEVEV
Trigger: AACTTCCACCTCCTGGCTTCAAGCAATTCTCGTGCC...CATAAGAGACCATCTCTTGGAAGCTGAAGAACTTAGGCCAAGGTTTTCCTGAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR TCA 90 bp AACGGTATCAGCCCTAGTGATTTGGTGCCTTCTACCAAACTACGGAGGAAGTGTCCAGCCTGGACATGGTaGAACCCTATCTCTACTAAA +
Preference number: 4 (lower is better)
Translates to: NGISPSDLVPSTKLRRKCPAWTW*NPISTK
Trigger: TTTAGTAGAGATAGGGTTTCACCATGTCCAGGCTGG...ACACTTCCTCCGTAGTTTGGTAGAAGGCACCAAATCACTAGGGCTGATACCGTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR TCA 90 bp CCCCACTCTCCCTCCAGCTTCTTCGGCTTCCACTGCATATGGGAATTCAAAATACCACCATTTCTGCTCTaGTCCATACCAGAAAATGGA +
Preference number: 4 (lower is better)
Translates to: PHSPSSFFGFHCIWEFKIPPFLL*SIPENG
Trigger: TCCATTTTCTGGTATGGATCAGAGCAGAAATGGTGG...TATTTTGAATTCCCATATGCAGTGGAAGCCGAAGAAGCTGGAGGGAGAGTGGGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR TCA 90 bp CTACGGAGGAAGTGTTTCCAATACCCCAATTTGGGTGCACTTGAGAGAAAAACAGGCACAAGAATCACTTaGACCCAGGCAGCAAGGTTG +
Preference number: 4 (lower is better)
Translates to: LRRKCFQYPNLGALERKTGTRIT*TQAARL
Trigger: CAACCTTGCTGCCTGGGTTCAAGTGATTCTTGTGCC...TGTTTTTCTCTCAAGTGCACCCAAATTGGGGTATTGGAAACACTTCCTCCGTAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR TCA 90 bp GCTGGTAAAGGGGAGACAGTACTAAACGCCCTGCCCAACAAATACTCAGAATCCTCTACTCGCCAGAGTTaGGGAAAAAGTAAATGCCCT +
Preference number: 4 (lower is better)
Translates to: AGKGETVLNALPNKYSESSTRQS*GKSKCP
Trigger: AGGGCATTTACTTTTTCCTCAACTCTGGCGAGTAGA...GGATTCTGAGTATTTGTTGGGCAGGGCGTTTAGTACTGTCTCCCCTTTACCAGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR TCA 90 bp TACTTTAATCACGTCTACTGGATTGCCCCCAGCAATCAGGTTGAGAAGGGTCTTGCACTCCAGCTTAGGTaGCAGAGCAAGAACCTCATT +
Preference number: 4 (lower is better)
Translates to: YFNHVYWIAPSNQVEKGLALQLR*QSKNLI
Trigger: AATGAGGTTCTTGCTCTGTCACCTAAGCTGGAGTGC...AAGACCCTTCTCAACCTGATTGCTGGGGGCAATCCAGTAGACGTGATTAAAGTA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000565613.5
CDS-3UTR TCA 90 bp TCCTCTGGAGGATTAAAAAGTTTCTTTCGCATTGCAATGCCATGCTCCCTGCTCGCACTCCAGCTTAGGTaGCAGAGCAAGAACCTCATT +
Preference number: 4 (lower is better)
Translates to: SSGGLKSFFRIAMPCSLLALQLR*QSKNLI
Trigger: AATGAGGTTCTTGCTCTGTCACCTAAGCTGGAGTGC...GAGCAGGGAGCATGGCATTGCAATGCGAAAGAAACTTTTTAATCCTCCAGAGGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000565925.5
ENST00000567593.5
ENST00000570195.5
CDS-3UTR GCA 90 bp AACGGTATCAGCCCTAGTGATTTGGTGCCTTCTACCAAACTACGGAGGAAGTGTCAATGCCATGCTCCCTaGTCTTGGTCCTGTTTTCTA +
Preference number: 4 (lower is better)
Translates to: NGISPSDLVPSTKLRRKCQCHAP*SWSCFL
Trigger: TAGAAAACAGGACCAAGAGCAGGGAGCATGGCATTG...ACACTTCCTCCGTAGTTTGGTAGAAGGCACCAAATCACTAGGGCTGATACCGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR GCA 90 bp TCTACGTACTTTAATCACGTCTACTGGATTGCCCCCAGCAATCAGGTTGAGAAGTCTTTCGCATTGCAATaGCATGCTCCCTGCTCTTGG +
Preference number: 4 (lower is better)
Translates to: STYFNHVYWIAPSNQVEKSFALQ*HAPCSW
Trigger: CCAAGAGCAGGGAGCATGGCATTGCAATGCGAAAGA...CTTCTCAACCTGATTGCTGGGGGCAATCCAGTAGACGTGATTAAAGTACGTAGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000561614.5
ENST00000565613.5
CDS-3UTR GCA 90 bp TCCTCTGGAGGATTAAAAAGTTTCTTTCGCATTGCAATGCCATGCTCCCTGCTCTCTTTCGCATTGCAATaGCATGCTCCCTGCTCTTGG +
Preference number: 4 (lower is better)
Translates to: SSGGLKSFFRIAMPCSLLSFALQ*HAPCSW
Trigger: CCAAGAGCAGGGAGCATGGCATTGCAATGCGAAAGA...GAGCAGGGAGCATGGCATTGCAATGCGAAAGAAACTTTTTAATCCTCCAGAGGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENST00000486645.5
ENST00000561614.5
ENST00000565925.5
ENST00000567593.5
ENST00000568228.5
ENST00000570086.5
ENST00000570195.5
CDS-3UTR GCA 90 bp CTACGGAGGAAGTGTTTCCAATACCCCAATTTGGGTGCACTTGAGAGAAAAACACCTGGCCCTTCCTTCTaGCTCATATTAAGCCCCTCA +
Preference number: 4 (lower is better)
Translates to: LRRKCFQYPNLGALERKTPGPSF*LILSPS
Trigger: TGAGGGGCTTAATATGAGGCAGAAGGAAGGGCCAGG...TGTTTTTCTCTCAAGTGCACCCAAATTGGGGTATTGGAAACACTTCCTCCGTAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR GCA 90 bp CTACGGAGGAAGTGTTTCCAATACCCCAATTTGGGTGCACTTGAGAGAAAAACAAACTGCGGCTACAGTTaGAGGCTCTATAACCCCACC +
Preference number: 4 (lower is better)
Translates to: LRRKCFQYPNLGALERKTNCGYS*RLYNPT
Trigger: GGTGGGGTTATAGAGCCTGCAACTGTAGCCGCAGTT...TGTTTTTCTCTCAAGTGCACCCAAATTGGGGTATTGGAAACACTTCCTCCGTAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR CCA 90 bp GCTGGTAAAGGGGAGACAGTACTAAACGCCCTGCCCAACAAATACTCAGAATCCTTCATCCTGCTCTTATaGTCAGCTACTGACATTGGC +
Preference number: 4 (lower is better)
Translates to: AGKGETVLNALPNKYSESFILLL*SATDIG
Trigger: GCCAATGTCAGTAGCTGACCATAAGAGCAGGATGAA...GGATTCTGAGTATTTGTTGGGCAGGGCGTTTAGTACTGTCTCCCCTTTACCAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR CCA 90 bp GCTGGTAAAGGGGAGACAGTACTAAACGCCCTGCCCAACAAATACTCAGAATCCCTTCCTAGAGGAAGCTaGAAAGGTAGATCATTGCCA +
Preference number: 4 (lower is better)
Translates to: AGKGETVLNALPNKYSESLPRGS*KGRSLP
Trigger: TGGCAATGATCTACCTTTCCAGCTTCCTCTAGGAAG...GGATTCTGAGTATTTGTTGGGCAGGGCGTTTAGTACTGTCTCCCCTTTACCAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR CCA 90 bp CCCCACTCTCCCTCCAGCTTCTTCGGCTTCCACTGCATATGGGAATTCAAAATATACCAGGCAGATCAATaGCATAATTTGGTTCAGCCC +
Preference number: 4 (lower is better)
Translates to: PHSPSSFFGFHCIWEFKIYQADQ*HNLVQP
Trigger: GGGCTGAACCAAATTATGCCATTGATCTGCCTGGTA...TATTTTGAATTCCCATATGCAGTGGAAGCCGAAGAAGCTGGAGGGAGAGTGGGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR CCA 90 bp TCTCAGGAAAACCTTGGCCTAAGTTCTTCAGCTTCCAAGAGATGGTCTCTTATGGGCCTTCGAAAGTACTaGGATTACAGGCGCAAGCCA +
Preference number: 4 (lower is better)
Translates to: SQENLGLSSSASKRWSLMGLRKY*DYRRKP
Trigger: TGGCTTGCGCCTGTAATCCCAGTACTTTCGAAGGCC...CATAAGAGACCATCTCTTGGAAGCTGAAGAACTTAGGCCAAGGTTTTCCTGAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR CCA 90 bp TCCTCTGGAGGATTAAAAAGTTTCTTTCGCATTGCAATGCCATGCTCCCTGCTCAGCCACTGTGGAAACTaGTATAGCAGTTCCCGACTC +
Preference number: 4 (lower is better)
Translates to: SSGGLKSFFRIAMPCSLLSHCGN*YSSSRL
Trigger: GAGTCGGGAACTGCTATACCAGTTTCCACAGTGGCT...GAGCAGGGAGCATGGCATTGCAATGCGAAAGAAACTTTTTAATCCTCCAGAGGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000568228.5
CDS-3UTR TCA 90 bp GCTGGTAAAGGGGAGACAGTACTAAACGCCCTGCCCAACAAATACTCAGAATCCTTTCAAAGCTGTCTATaGTCTTCCTCCACTCTAAGC +
Preference number: 4 (lower is better)
Translates to: AGKGETVLNALPNKYSESFQSCL*SSSTLS
Trigger: GCTTAGAGTGGAGGAAGATCATAGACAGCTTTGAAA...GGATTCTGAGTATTTGTTGGGCAGGGCGTTTAGTACTGTCTCCCCTTTACCAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR TCA 90 bp GCTGGTAAAGGGGAGACAGTACTAAACGCCCTGCCCAACAAATACTCAGAATCCGCCATCACAGCAACTTaGACTATCCCTAGAGAATTT +
Preference number: 4 (lower is better)
Translates to: AGKGETVLNALPNKYSESAITAT*TIPREF
Trigger: AAATTCTCTAGGGATAGTTCAAGTTGCTGTGATGGC...GGATTCTGAGTATTTGTTGGGCAGGGCGTTTAGTACTGTCTCCCCTTTACCAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR GCA 90 bp TCCTGTTTTCTACGTACTTTAATCACGTCTACTGGATTGCCCCCAGCAATCAGGCAATGCCATGCTCCCTaGTCTTGGTCCTGTTTTCTA +
Preference number: 4 (lower is better)
Translates to: SCFLRTLITSTGLPPAIRQCHAP*SWSCFL
Trigger: TAGAAAACAGGACCAAGAGCAGGGAGCATGGCATTG...CCTGATTGCTGGGGGCAATCCAGTAGACGTGATTAAAGTACGTAGAAAACAGGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000561614.5
ENST00000565613.5
CDS-3UTR GCA 90 bp TACTTTAATCACGTCTACTGGATTGCCCCCAGCAATCAGGTTGAGAAGGGTCTTCAATGCCATGCTCCCTaGTCTTGGTCCTGTTTTCTA +
Preference number: 4 (lower is better)
Translates to: YFNHVYWIAPSNQVEKGLQCHAP*SWSCFL
Trigger: TAGAAAACAGGACCAAGAGCAGGGAGCATGGCATTG...AAGACCCTTCTCAACCTGATTGCTGGGGGCAATCCAGTAGACGTGATTAAAGTA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000561614.5
ENST00000565613.5
CDS-3UTR GCA 90 bp AACGGTATCAGCCCTAGTGATTTGGTGCCTTCTACCAAACTACGGAGGAAGTGTAAGTTTCTTTCGCATTaGAATGCCATGCTCCCTGCT +
Preference number: 4 (lower is better)
Translates to: NGISPSDLVPSTKLRRKCKFLSH*NAMLPA
Trigger: AGCAGGGAGCATGGCATTGCAATGCGAAAGAAACTT...ACACTTCCTCCGTAGTTTGGTAGAAGGCACCAAATCACTAGGGCTGATACCGTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR GCA 90 bp GCTGGTAAAGGGGAGACAGTACTAAACGCCCTGCCCAACAAATACTCAGAATCCCACCATATTAAAACCTaGAACTGGTCATCACAGCAC +
Preference number: 4 (lower is better)
Translates to: AGKGETVLNALPNKYSESHHIKT*NWSSQH
Trigger: GTGCTGTGATGACCAGTTGCAGGTTTTAATATGGTG...GGATTCTGAGTATTTGTTGGGCAGGGCGTTTAGTACTGTCTCCCCTTTACCAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR GCA 90 bp GCTGGTAAAGGGGAGACAGTACTAAACGCCCTGCCCAACAAATACTCAGAATCCTCCAAAGTTTCATCCTaGTCTTATGGTCAGCTACTG +
Preference number: 4 (lower is better)
Translates to: AGKGETVLNALPNKYSESSKVSS*SYGQLL
Trigger: CAGTAGCTGACCATAAGAGCAGGATGAAACTTTGGA...GGATTCTGAGTATTTGTTGGGCAGGGCGTTTAGTACTGTCTCCCCTTTACCAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR GCA 90 bp CCCCACTCTCCCTCCAGCTTCTTCGGCTTCCACTGCATATGGGAATTCAAAATAGGAAAGGTAGATCATTaGCATAGCCTTCAGTGTGTA +
Preference number: 4 (lower is better)
Translates to: PHSPSSFFGFHCIWEFKIGKVDH*HSLQCV
Trigger: TACACACTGAAGGCTATGGCAATGATCTACCTTTCC...TATTTTGAATTCCCATATGCAGTGGAAGCCGAAGAAGCTGGAGGGAGAGTGGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR GCA 90 bp AACGGTATCAGCCCTAGTGATTTGGTGCCTTCTACCAAACTACGGAGGAAGTGTAGGAAAAAGTGCGCTTaGTCTAGACAGGAGAAACAG +
Preference number: 4 (lower is better)
Translates to: NGISPSDLVPSTKLRRKCRKKCA*SRQEKQ
Trigger: CTGTTTCTCCTGTCTAGAGCAAGCGCACTTTTTCCT...ACACTTCCTCCGTAGTTTGGTAGAAGGCACCAAATCACTAGGGCTGATACCGTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR GCA 90 bp CTACGGAGGAAGTGTTTCCAATACCCCAATTTGGGTGCACTTGAGAGAAAAACATTCCATGGTATCACCTaGACCCAGCACAATGCCAGA +
Preference number: 4 (lower is better)
Translates to: LRRKCFQYPNLGALERKTFHGIT*TQHNAR
Trigger: TCTGGCATTGTGCTGGGTGCAGGTGATACCATGGAA...TGTTTTTCTCTCAAGTGCACCCAAATTGGGGTATTGGAAACACTTCCTCCGTAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR GCA 90 bp ACTGTCACTGGGTTGAACTGGTTTAACCATAACTATTCACCGAATAACCAGAAATCAGCCACCTGTCTCTaGTCTCCCCTCCCTACTGTC +
Preference number: 4 (lower is better)
Translates to: TVTGLNWFNHNYSPNNQKSATCL*SPLPTV
Trigger: GACAGTAGGGAGGGGAGAGCAGAGACAGGTGGCTGA...TTTCTGGTTATTCGGTGAATAGTTATGGTTAAACCAGTTCAACCCAGTGACAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR GCA 90 bp GCTGGTAAAGGGGAGACAGTACTAAACGCCCTGCCCAACAAATACTCAGAATCCACTTCCTTAGGAATCTaGTGGAAAATGAGGCTCAGA +
Preference number: 4 (lower is better)
Translates to: AGKGETVLNALPNKYSESTSLGI*WKMRLR
Trigger: TCTGAGCCTCATTTTCCAGCAGATTCCTAAGGAAGT...GGATTCTGAGTATTTGTTGGGCAGGGCGTTTAGTACTGTCTCCCCTTTACCAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR GCA 90 bp ACTGTCACTGGGTTGAACTGGTTTAACCATAACTATTCACCGAATAACCAGAAACCAAGATCACACCACTaGACCCCAGCCTGGGTGACA +
Preference number: 4 (lower is better)
Translates to: TVTGLNWFNHNYSPNNQKPRSHH*TPAWVT
Trigger: TGTCACCCAGGCTGGGGTGCAGTGGTGTGATCTTGG...TTTCTGGTTATTCGGTGAATAGTTATGGTTAAACCAGTTCAACCCAGTGACAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR GCA 90 bp CCCCACTCTCCCTCCAGCTTCTTCGGCTTCCACTGCATATGGGAATTCAAAATACACTGTCCTAAGAGCTaGAGATACAGGAATAATGTG +
Preference number: 4 (lower is better)
Translates to: PHSPSSFFGFHCIWEFKIHCPKS*RYRNNV
Trigger: CACATTATTCCTGTATCTGCAGCTCTTAGGACAGTG...TATTTTGAATTCCCATATGCAGTGGAAGCCGAAGAAGCTGGAGGGAGAGTGGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR CCA 90 bp TGGTCCTGTTTTCTACGTACTTTAATCACGTCTACTGGATTGCCCCCAGCAATCCATGCTCCCTGCTCTTaGTCCTGTTTTCTACGTACT +
Preference number: 4 (lower is better)
Translates to: WSCFLRTLITSTGLPPAIHAPCS*SCFLRT
Trigger: AGTACGTAGAAAACAGGACCAAGAGCAGGGAGCATG...GATTGCTGGGGGCAATCCAGTAGACGTGATTAAAGTACGTAGAAAACAGGACCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000561614.5
ENST00000565613.5
CDS-3UTR CCA 90 bp GCTGGTAAAGGGGAGACAGTACTAAACGCCCTGCCCAACAAATACTCAGAATCCAATTTGAGATCAGCCTaGCCAACATGGCAAAACTCT +
Preference number: 4 (lower is better)
Translates to: AGKGETVLNALPNKYSESNLRSA*PTWQNS
Trigger: AGAGTTTTGCCATGTTGGCCAGGCTGATCTCAAATT...GGATTCTGAGTATTTGTTGGGCAGGGCGTTTAGTACTGTCTCCCCTTTACCAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR CCA 90 bp AACGGTATCAGCCCTAGTGATTTGGTGCCTTCTACCAAACTACGGAGGAAGTGTATCTCTTCCTTCACTTaGTATCCTGCACAGACCCTA +
Preference number: 4 (lower is better)
Translates to: NGISPSDLVPSTKLRRKCISSFT*YPAQTL
Trigger: TAGGGTCTGTGCAGGATACCAAGTGAAGGAAGAGAT...ACACTTCCTCCGTAGTTTGGTAGAAGGCACCAAATCACTAGGGCTGATACCGTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR CCA 90 bp GCTGGTAAAGGGGAGACAGTACTAAACGCCCTGCCCAACAAATACTCAGAATCCAGGCAGGGATGTCTATaGATTAAGGTAGATTCTGGT +
Preference number: 4 (lower is better)
Translates to: AGKGETVLNALPNKYSESRQGCL*IKVDSG
Trigger: ACCAGAATCTACCTTAATCCATAGACATCCCTGCCT...GGATTCTGAGTATTTGTTGGGCAGGGCGTTTAGTACTGTCTCCCCTTTACCAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR CCA 90 bp CCCCACTCTCCCTCCAGCTTCTTCGGCTTCCACTGCATATGGGAATTCAAAATAGTCCTTTACAGGATTTaGGCAATCTTCCCTTTTGCT +
Preference number: 4 (lower is better)
Translates to: PHSPSSFFGFHCIWEFKIVLYRI*AIFPFA
Trigger: AGCAAAAGGGAAGATTGCCCAAATCCTGTAAAGGAC...TATTTTGAATTCCCATATGCAGTGGAAGCCGAAGAAGCTGGAGGGAGAGTGGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR CCA 90 bp TTAATCACGTCTACTGGATTGCCCCCAGCAATCAGGTTGAGAAGGGTCTTAAGGTTTAATCACGTCTACTaGATTGCCCCCAGCAATCAG +
Preference number: 4 (lower is better)
Translates to: LITSTGLPPAIRLRRVLRFNHVY*IAPSNQ
Trigger: CTGATTGCTGGGGGCAATCCAGTAGACGTGATTAAA...CCTTAAGACCCTTCTCAACCTGATTGCTGGGGGCAATCCAGTAGACGTGATTAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000561614.5
ENST00000565613.5
CDS-3UTR CCA 90 bp GCTGGTAAAGGGGAGACAGTACTAAACGCCCTGCCCAACAAATACTCAGAATCCAGCCACTGTGGAAACTaGTATAGCAGTTCCTCAAAA +
Preference number: 4 (lower is better)
Translates to: AGKGETVLNALPNKYSESSHCGN*YSSSSK
Trigger: TTTTGAGGAACTGCTATACCAGTTTCCACAGTGGCT...GGATTCTGAGTATTTGTTGGGCAGGGCGTTTAGTACTGTCTCCCCTTTACCAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000564249.5
CDS-3UTR TCA 90 bp CCCCACTCTCCCTCCAGCTTCTTCGGCTTCCACTGCATATGGGAATTCAAAATAGAAGATGAAGGTCTCTaGACAGAAGATGCTCTTATA +
Preference number: 4 (lower is better)
Translates to: PHSPSSFFGFHCIWEFKIEDEGL*TEDALI
Trigger: TATAAGAGCATCTTCTGTTCAGAGACCTTCATCTTC...TATTTTGAATTCCCATATGCAGTGGAAGCCGAAGAAGCTGGAGGGAGAGTGGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR TCA 90 bp TCCTCTGGAGGATTAAAAAGTTTCTTTCGCATTGCAATGCCATGCTCCCTGCTCGCACTCCAGCTTAGGTaGCAGAGCAAGAACATTTTT +
Preference number: 4 (lower is better)
Translates to: SSGGLKSFFRIAMPCSLLALQLR*QSKNIF
Trigger: AAAAATGTTCTTGCTCTGTCACCTAAGCTGGAGTGC...GAGCAGGGAGCATGGCATTGCAATGCGAAAGAAACTTTTTAATCCTCCAGAGGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000486645.5
CDS-3UTR GCA 90 bp TCCTCTGGAGGATTAAAAAGTTTCTTTCGCATTGCAATGCCATGCTCCCTGCTCAAGTTTCTTTCGCATTaGAATGCCATGCTCCCTGCT +
Preference number: 4 (lower is better)
Translates to: SSGGLKSFFRIAMPCSLLKFLSH*NAMLPA
Trigger: AGCAGGGAGCATGGCATTGCAATGCGAAAGAAACTT...GAGCAGGGAGCATGGCATTGCAATGCGAAAGAAACTTTTTAATCCTCCAGAGGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENST00000486645.5
ENST00000561614.5
ENST00000565925.5
ENST00000567593.5
ENST00000568228.5
ENST00000570086.5
ENST00000570195.5
CDS-3UTR GCA 90 bp TCTACGTACTTTAATCACGTCTACTGGATTGCCCCCAGCAATCAGGTTGAGAAGAAGTTTCTTTCGCATTaGAATGCCATGCTCCCTGCT +
Preference number: 4 (lower is better)
Translates to: STYFNHVYWIAPSNQVEKKFLSH*NAMLPA
Trigger: AGCAGGGAGCATGGCATTGCAATGCGAAAGAAACTT...CTTCTCAACCTGATTGCTGGGGGCAATCCAGTAGACGTGATTAAAGTACGTAGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000561614.5
ENST00000565613.5
CDS-3UTR GCA 90 bp CCCCACTCTCCCTCCAGCTTCTTCGGCTTCCACTGCATATGGGAATTCAAAATAACCAACAAGGCCTCATaGTGGATATTATACACAGAA +
Preference number: 4 (lower is better)
Translates to: PHSPSSFFGFHCIWEFKITNKAS*WILYTE
Trigger: TTCTGTGTATAATATCCAGCATGAGGCCTTGTTGGT...TATTTTGAATTCCCATATGCAGTGGAAGCCGAAGAAGCTGGAGGGAGAGTGGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR GCA 90 bp AACGGTATCAGCCCTAGTGATTTGGTGCCTTCTACCAAACTACGGAGGAAGTGTCTAAATGCCTTAAAGTaGGCCTCAGAATGTATCCCA +
Preference number: 4 (lower is better)
Translates to: NGISPSDLVPSTKLRRKCLNALK*ASECIP
Trigger: TGGGATACATTCTGAGGCGCACTTTAAGGCATTTAG...ACACTTCCTCCGTAGTTTGGTAGAAGGCACCAAATCACTAGGGCTGATACCGTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR GCA 90 bp CTACGGAGGAAGTGTTTCCAATACCCCAATTTGGGTGCACTTGAGAGAAAAACAATCCTCAGGAAAAAGTaGGCTTGCTCTAGACAGGAG +
Preference number: 4 (lower is better)
Translates to: LRRKCFQYPNLGALERKTILRKK*ACSRQE
Trigger: CTCCTGTCTAGAGCAAGCGCACTTTTTCCTGAGGAT...TGTTTTTCTCTCAAGTGCACCCAAATTGGGGTATTGGAAACACTTCCTCCGTAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR GCA 90 bp AACGGTATCAGCCCTAGTGATTTGGTGCCTTCTACCAAACTACGGAGGAAGTGTATACCAGAAAATGGATaGTTCATGGACCGTCTCTCT +
Preference number: 4 (lower is better)
Translates to: NGISPSDLVPSTKLRRKCIPENG*FMDRLS
Trigger: AGAGAGACGGTCCATGAAGCATCCATTTTCTGGTAT...ACACTTCCTCCGTAGTTTGGTAGAAGGCACCAAATCACTAGGGCTGATACCGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR GCA 90 bp GCTGGTAAAGGGGAGACAGTACTAAACGCCCTGCCCAACAAATACTCAGAATCCTGCAGAATTGCAGAATaGTTTACTTTCTTAGCCCTC +
Preference number: 4 (lower is better)
Translates to: AGKGETVLNALPNKYSESCRIAE*FTFLAL
Trigger: GAGGGCTAAGAAAGTAAAGCATTCTGCAATTCTGCA...GGATTCTGAGTATTTGTTGGGCAGGGCGTTTAGTACTGTCTCCCCTTTACCAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR GCA 90 bp TCCTCTGGAGGATTAAAAAGTTTCTTTCGCATTGCAATGCCATGCTCCCTGCTCAATACCTGGCCATTATaGCTCAAACCTTTTCGGGTC +
Preference number: 4 (lower is better)
Translates to: SSGGLKSFFRIAMPCSLLNTWPL*LKPFRV
Trigger: GACCCGAAAAGGTTTGAGGCATAATGGCCAGGTATT...GAGCAGGGAGCATGGCATTGCAATGCGAAAGAAACTTTTTAATCCTCCAGAGGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000567593.5
CDS-3UTR CCA 90 bp TTTTCTACGTACTTTAATCACGTCTACTGGATTGCCCCCAGCAATCAGGTTGAGCATGCTCCCTGCTCTTaGTCCTGTTTTCTACGTACT +
Preference number: 4 (lower is better)
Translates to: FSTYFNHVYWIAPSNQVEHAPCS*SCFLRT
Trigger: AGTACGTAGAAAACAGGACCAAGAGCAGGGAGCATG...CTCAACCTGATTGCTGGGGGCAATCCAGTAGACGTGATTAAAGTACGTAGAAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000561614.5
ENST00000565613.5
CDS-3UTR CCA 90 bp CCCCACTCTCCCTCCAGCTTCTTCGGCTTCCACTGCATATGGGAATTCAAAATAAACAAGGCCTCATGCTaGATATTATACACAGAACTC +
Preference number: 4 (lower is better)
Translates to: PHSPSSFFGFHCIWEFKINKASC*ILYTEL
Trigger: GAGTTCTGTGTATAATATCCAGCATGAGGCCTTGTT...TATTTTGAATTCCCATATGCAGTGGAAGCCGAAGAAGCTGGAGGGAGAGTGGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR CCA 90 bp AACGGTATCAGCCCTAGTGATTTGGTGCCTTCTACCAAACTACGGAGGAAGTGTTCAGCTTCCAAGAGATaGTCTCTTATGACCCAAAAG +
Preference number: 4 (lower is better)
Translates to: NGISPSDLVPSTKLRRKCSASKR*SLMTQK
Trigger: CTTTTGGGTCATAAGAGACCATCTCTTGGAAGCTGA...ACACTTCCTCCGTAGTTTGGTAGAAGGCACCAAATCACTAGGGCTGATACCGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR CCA 90 bp CCCCACTCTCCCTCCAGCTTCTTCGGCTTCCACTGCATATGGGAATTCAAAATAACTGGTGGGAAATTCTaGAAAGATAGTTGTGACTGT +
Preference number: 4 (lower is better)
Translates to: PHSPSSFFGFHCIWEFKITGGKF*KDSCDC
Trigger: ACAGTCACAACTATCTTTCCAGAATTTCCCACCAGT...TATTTTGAATTCCCATATGCAGTGGAAGCCGAAGAAGCTGGAGGGAGAGTGGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR CCA 90 bp GCTGGTAAAGGGGAGACAGTACTAAACGCCCTGCCCAACAAATACTCAGAATCCGTGTCAGAAAGTTACTaGTGGGAAATTCTGGAAAGA +
Preference number: 4 (lower is better)
Translates to: AGKGETVLNALPNKYSESVSESY*WEILER
Trigger: TCTTTCCAGAATTTCCCACCAGTAACTTTCTGACAC...GGATTCTGAGTATTTGTTGGGCAGGGCGTTTAGTACTGTCTCCCCTTTACCAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR CCA 90 bp CCCCACTCTCCCTCCAGCTTCTTCGGCTTCCACTGCATATGGGAATTCAAAATAAGGAAAGAAAATCCTTaGGGGTTGAAATCAGAGAGA +
Preference number: 4 (lower is better)
Translates to: PHSPSSFFGFHCIWEFKIRKENP*GLKSER
Trigger: TCTCTCTGATTTCAACCCCCAAGGATTTTCTTTCCT...TATTTTGAATTCCCATATGCAGTGGAAGCCGAAGAAGCTGGAGGGAGAGTGGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR CCA 90 bp TGTTTTCTACGTACTTTAATCACGTCTACTGGATTGCCCCCAGCAATCAGGTTGCAAAGGAAGTCCAGATaGTCCCTCATTCTTCAGGCA +
Preference number: 4 (lower is better)
Translates to: CFLRTLITSTGLPPAIRLQRKSR*SLILQA
Trigger: TGCCTGAAGAATGAGGGACCATCTGGACTTCCTTTG...CAACCTGATTGCTGGGGGCAATCCAGTAGACGTGATTAAAGTACGTAGAAAACA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000561614.5
3UTR CAA 72 bp CCTTGCTCACTGTGCTCCAGTTCACTAGCATTTTATTaGTCAAACTCCCTTCCTAGAGGAAGCTGGAAAGGT +
Preference number: 4 (lower is better)
Translates to: PCSLCSSSLAFY*SNSLPRGSWKG
Trigger: ACCTTTCCAGCTTCCTCTAGGAAGGGAGTTTGACAAATAAAATGCTAGTGAACTGGAGCACAGTGAGCAAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR CAA 72 bp TCCTGTTTTCTACGTACTTTAATCACGTCTACTGGATaGCCCCCAGCAATCAGGTTGAGAAGGGTCTTAAGG +
Preference number: 4 (lower is better)
Translates to: SCFLRTLITSTG*PPAIRLRRVLR
Trigger: CCTTAAGACCCTTCTCAACCTGATTGCTGGGGGCAATCCAGTAGACGTGATTAAAGTACGTAGAAAACAGGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000561614.5
ENST00000565613.5
CDS-3UTR TCA 90 bp AACGGTATCAGCCCTAGTGATTTGGTGCCTTCTACCAAACTACGGAGGAAGTGTATAGCTCCTTCTTCATaGAGACTGAACATGAAAGTC +
Preference number: 4 (lower is better)
Translates to: NGISPSDLVPSTKLRRKCIAPSS*RLNMKV
Trigger: GACTTTCATGTTCAGTCTTCATGAAGAAGGAGCTAT...ACACTTCCTCCGTAGTTTGGTAGAAGGCACCAAATCACTAGGGCTGATACCGTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR TCA 90 bp CCCCACTCTCCCTCCAGCTTCTTCGGCTTCCACTGCATATGGGAATTCAAAATACAATTTGGGTGCACTTaGGAGAAAAACAATATTGAG +
Preference number: 4 (lower is better)
Translates to: PHSPSSFFGFHCIWEFKIQFGCT*EKNNIE
Trigger: CTCAATATTGTTTTTCTCTCAAGTGCACCCAAATTG...TATTTTGAATTCCCATATGCAGTGGAAGCCGAAGAAGCTGGAGGGAGAGTGGGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR TCA 90 bp GCTGGTAAAGGGGAGACAGTACTAAACGCCCTGCCCAACAAATACTCAGAATCCCTAGTGCCATTTTTGTaGCATTCCTTAAGCAAGTTA +
Preference number: 4 (lower is better)
Translates to: AGKGETVLNALPNKYSESLVPFL*HSLSKL
Trigger: TAACTTGCTTAAGGAATGTCACAAAAATGGCACTAG...GGATTCTGAGTATTTGTTGGGCAGGGCGTTTAGTACTGTCTCCCCTTTACCAGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000570086.5
CDS-3UTR GCA 90 bp ACTGTCACTGGGTTGAACTGGTTTAACCATAACTATTCACCGAATAACCAGAAAGCACAGACCCTACAATaGCTTCCTGTTGCCCTTAGC +
Preference number: 4 (lower is better)
Translates to: TVTGLNWFNHNYSPNNQKAQTLQ*LPVALS
Trigger: GCTAAGGGCAACAGGAAGGCATTGTAGGGTCTGTGC...TTTCTGGTTATTCGGTGAATAGTTATGGTTAAACCAGTTCAACCCAGTGACAGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR GCA 90 bp TCTCAGGAAAACCTTGGCCTAAGTTCTTCAGCTTCCAAGAGATGGTCTCTTATGACACGGCTGAGATTCTaGGTTGCTAACAAACTTTCC +
Preference number: 4 (lower is better)
Translates to: SQENLGLSSSASKRWSLMTRLRF*VANKLS
Trigger: GGAAAGTTTGTTAGCAACGCAGAATCTCAGCCGTGT...CATAAGAGACCATCTCTTGGAAGCTGAAGAACTTAGGCCAAGGTTTTCCTGAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR CCA 90 bp ACTGTCACTGGGTTGAACTGGTTTAACCATAACTATTCACCGAATAACCAGAAAGTAATCCCAACACTTTaGGAGGCTGAAGTGGGCGGA +
Preference number: 4 (lower is better)
Translates to: TVTGLNWFNHNYSPNNQKVIPTL*EAEVGG
Trigger: TCCGCCCACTTCAGCCTCCCAAAGTGTTGGGATTAC...TTTCTGGTTATTCGGTGAATAGTTATGGTTAAACCAGTTCAACCCAGTGACAGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR CCA 90 bp CTACGGAGGAAGTGTTTCCAATACCCCAATTTGGGTGCACTTGAGAGAAAAACAATCCATCTTATTCCATaGTATCACCTGCACCCAGCA +
Preference number: 4 (lower is better)
Translates to: LRRKCFQYPNLGALERKTIHLIP*YHLHPA
Trigger: TGCTGGGTGCAGGTGATACCATGGAATAAGATGGAT...TGTTTTTCTCTCAAGTGCACCCAAATTGGGGTATTGGAAACACTTCCTCCGTAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR CCA 90 bp TCTCAGGAAAACCTTGGCCTAAGTTCTTCAGCTTCCAAGAGATGGTCTCTTATGTGCTCACTTCAGACGTaGTATACACTCAGCCAGTTT +
Preference number: 4 (lower is better)
Translates to: SQENLGLSSSASKRWSLMCSLQT*YTLSQF
Trigger: AAACTGGCTGAGTGTATACCACGTCTGAAGTGAGCA...CATAAGAGACCATCTCTTGGAAGCTGAAGAACTTAGGCCAAGGTTTTCCTGAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR CCA 90 bp CTACGGAGGAAGTGTTTCCAATACCCCAATTTGGGTGCACTTGAGAGAAAAACAAACAGCAATTGGTACTaGGAAGGTTCTTGCCCACTT +
Preference number: 4 (lower is better)
Translates to: LRRKCFQYPNLGALERKTNSNWY*EGSCPL
Trigger: AAGTGGGCAAGAACCTTCCCAGTACCAATTGCTGTT...TGTTTTTCTCTCAAGTGCACCCAAATTGGGGTATTGGAAACACTTCCTCCGTAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR CCA 90 bp GCTGGTAAAGGGGAGACAGTACTAAACGCCCTGCCCAACAAATACTCAGAATCCAGTCTCTACGAGGAATaGTGTGAGAAACAAGAATAT +
Preference number: 4 (lower is better)
Translates to: AGKGETVLNALPNKYSESSLYEE*CEKQEY
Trigger: ATATTCTTGTTTCTCACACCATTCCTCGTAGAGACT...GGATTCTGAGTATTTGTTGGGCAGGGCGTTTAGTACTGTCTCCCCTTTACCAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR CCA 90 bp CCCCACTCTCCCTCCAGCTTCTTCGGCTTCCACTGCATATGGGAATTCAAAATACACAATGGAAAAAGATaGAAGATACTGAGTCTCTAC +
Preference number: 4 (lower is better)
Translates to: PHSPSSFFGFHCIWEFKIHNGKR*KILSLY
Trigger: GTAGAGACTCAGTATCTTCCATCTTTTTCCATTGTG...TATTTTGAATTCCCATATGCAGTGGAAGCCGAAGAAGCTGGAGGGAGAGTGGGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000219400.8
3UTR CAA 72 bp TTAATCACGTCTACTGGATTGCCCCCAGCAATCAGGTaGAGAAGGGTCTTAAGGGAAACTCTTCAGAAGATA +
Preference number: 4 (lower is better)
Translates to: LITSTGLPPAIR*RRVLRETLQKI
Trigger: TATCTTCTGAAGAGTTTCCCTTAAGACCCTTCTCAACCTGATTGCTGGGGGCAATCCAGTAGACGTGATTAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000561614.5
ENST00000565613.5
3UTR CAA 72 bp AGTTTCTTTCGCATTGCAATGCCATGCTCCCTGCTCTaGGTCCTGTTTTCTACGTACTTTAATCACGTCTAC +
Preference number: 4 (lower is better)
Translates to: SFFRIAMPCSLL*VLFSTYFNHVY
Trigger: GTAGACGTGATTAAAGTACGTAGAAAACAGGACCAAGAGCAGGGAGCATGGCATTGCAATGCGAAAGAAACT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000561614.5
ENST00000565613.5
CDS-3UTR TCA 90 bp CTACGGAGGAAGTGTTTCCAATACCCCAATTTGGGTGCACTTGAGAGAAAAACATTTCTTTTCTCTAAGTaGGAGAAACTCAGCCACCTG +
Preference number: 4 (lower is better)
Translates to: LRRKCFQYPNLGALERKTFLFSK*EKLSHL
Trigger: CAGGTGGCTGAGTTTCTCTCACTTAGAGAAAAGAAA...TGTTTTTCTCTCAAGTGCACCCAAATTGGGGTATTGGAAACACTTCCTCCGTAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR GCA 90 bp ACTGTCACTGGGTTGAACTGGTTTAACCATAACTATTCACCGAATAACCAGAAATCTTTCGCATTGCAATaGCATGCTCCCTGCTCTTGG +
Preference number: 4 (lower is better)
Translates to: TVTGLNWFNHNYSPNNQKSFALQ*HAPCSW
Trigger: CCAAGAGCAGGGAGCATGGCATTGCAATGCGAAAGA...TTTCTGGTTATTCGGTGAATAGTTATGGTTAAACCAGTTCAACCCAGTGACAGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR GCA 90 bp CTACGGAGGAAGTGTTTCCAATACCCCAATTTGGGTGCACTTGAGAGAAAAACAGCACAAAAACCTAATTaGTCTCCTTGGGCGTTATCT +
Preference number: 4 (lower is better)
Translates to: LRRKCFQYPNLGALERKTAQKPN*SPWALS
Trigger: AGATAACGCCCAAGGAGAGCAATTAGGTTTTTGTGC...TGTTTTTCTCTCAAGTGCACCCAAATTGGGGTATTGGAAACACTTCCTCCGTAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR GCA 90 bp AACGGTATCAGCCCTAGTGATTTGGTGCCTTCTACCAAACTACGGAGGAAGTGTAGTTTACTTATCGTCTaGAAGTCCACAGTAAGGAAA +
Preference number: 4 (lower is better)
Translates to: NGISPSDLVPSTKLRRKCSLLIV*KSTVRK
Trigger: TTTCCTTACTGTGGACTTGCAGACGATAAGTAAACT...ACACTTCCTCCGTAGTTTGGTAGAAGGCACCAAATCACTAGGGCTGATACCGTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR GCA 90 bp AACGGTATCAGCCCTAGTGATTTGGTGCCTTCTACCAAACTACGGAGGAAGTGTTCTCTGAACAGAAGATaGTCTTATAACTCCTCTCTT +
Preference number: 4 (lower is better)
Translates to: NGISPSDLVPSTKLRRKCSLNRR*SYNSSL
Trigger: AAGAGAGGAGTTATAAGAGCATCTTCTGTTCAGAGA...ACACTTCCTCCGTAGTTTGGTAGAAGGCACCAAATCACTAGGGCTGATACCGTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR CCA 90 bp CTACGGAGGAAGTGTTTCCAATACCCCAATTTGGGTGCACTTGAGAGAAAAACATTCTCAGGAAAACCTTaGCCTAAGTTCTTCAGCTTC +
Preference number: 4 (lower is better)
Translates to: LRRKCFQYPNLGALERKTFSGKP*PKFFSF
Trigger: GAAGCTGAAGAACTTAGGCCAAGGTTTTCCTGAGAA...TGTTTTTCTCTCAAGTGCACCCAAATTGGGGTATTGGAAACACTTCCTCCGTAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR TCA 90 bp ACTGTCACTGGGTTGAACTGGTTTAACCATAACTATTCACCGAATAACCAGAAACTAAGCTCAGGAATTTaGGATCAGCCTGGCCAACAT +
Preference number: 4 (lower is better)
Translates to: TVTGLNWFNHNYSPNNQKLSSGI*DQPGQH
Trigger: ATGTTGGCCAGGCTGATCTCAAATTCCTGAGCTTAG...TTTCTGGTTATTCGGTGAATAGTTATGGTTAAACCAGTTCAACCCAGTGACAGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR TCA 90 bp TCCTCTGGAGGATTAAAAAGTTTCTTTCGCATTGCAATGCCATGCTCCCTGCTCCTAGTGCCATTTTTGTaGCATTCCTTAAGCAAGTTA +
Preference number: 4 (lower is better)
Translates to: SSGGLKSFFRIAMPCSLLLVPFL*HSLSKL
Trigger: TAACTTGCTTAAGGAATGTCACAAAAATGGCACTAG...GAGCAGGGAGCATGGCATTGCAATGCGAAAGAAACTTTTTAATCCTCCAGAGGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000568228.5
ENST00000570086.5
CDS-3UTR GCA 90 bp TCCCAATCCAATTATGAGGAAAACAAGACAAATTCAAACAGAGGAGCATTCTACTCTTTCGCATTGCAATaGCATGCTCCCTGCTCTTGG +
Preference number: 4 (lower is better)
Translates to: SQSNYEENKTNSNRGAFYSFALQ*HAPCSW
Trigger: CCAAGAGCAGGGAGCATGGCATTGCAATGCGAAAGA...GTAGAATGCTCCTCTGTTTGAATTTGTCTTGTTTTCCTCATAATTGGATTGGGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000567593.5
CDS-3UTR CCA 90 bp ACTGTCACTGGGTTGAACTGGTTTAACCATAACTATTCACCGAATAACCAGAAACATGCTCCCTGCTCTTaGTCCTGTTTTCTACGTACT +
Preference number: 4 (lower is better)
Translates to: TVTGLNWFNHNYSPNNQKHAPCS*SCFLRT
Trigger: AGTACGTAGAAAACAGGACCAAGAGCAGGGAGCATG...TTTCTGGTTATTCGGTGAATAGTTATGGTTAAACCAGTTCAACCCAGTGACAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR CCA 90 bp CTACGGAGGAAGTGTTTCCAATACCCCAATTTGGGTGCACTTGAGAGAAAAACAGAAATTAGAATAAATTaGATGCAGGGGCTCATGCCT +
Preference number: 4 (lower is better)
Translates to: LRRKCFQYPNLGALERKTEIRIN*MQGLMP
Trigger: AGGCATGAGCCCCTGCATCCAATTTATTCTAATTTC...TGTTTTTCTCTCAAGTGCACCCAAATTGGGGTATTGGAAACACTTCCTCCGTAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR CCA 90 bp TCTCAGGAAAACCTTGGCCTAAGTTCTTCAGCTTCCAAGAGATGGTCTCTTATGAAAATGGATGCTTCATaGACCGTCTCTCTCTCAATT +
Preference number: 4 (lower is better)
Translates to: SQENLGLSSSASKRWSLMKMDAS*TVSLSI
Trigger: AATTGAGAGAGAGACGGTCCATGAAGCATCCATTTT...CATAAGAGACCATCTCTTGGAAGCTGAAGAACTTAGGCCAAGGTTTTCCTGAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR TCA 90 bp ACTGTCACTGGGTTGAACTGGTTTAACCATAACTATTCACCGAATAACCAGAAAGTCCTCTGTCTTCTATaGCATCTACCTAATCATGGC +
Preference number: 4 (lower is better)
Translates to: TVTGLNWFNHNYSPNNQKVLCLL*HLPNHG
Trigger: GCCATGATTAGGTAGATGTCATAGAAGACAGAGGAC...TTTCTGGTTATTCGGTGAATAGTTATGGTTAAACCAGTTCAACCCAGTGACAGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR TCA 90 bp ACTGTCACTGGGTTGAACTGGTTTAACCATAACTATTCACCGAATAACCAGAAACACAATAACTCTATGTaGCAGGTACTGTCACTGGGT +
Preference number: 4 (lower is better)
Translates to: TVTGLNWFNHNYSPNNQKHNNSM*QVLSLG
Trigger: ACCCAGTGACAGTACCTGTCACATAGAGTTATTGTG...TTTCTGGTTATTCGGTGAATAGTTATGGTTAAACCAGTTCAACCCAGTGACAGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR TCA 90 bp TCTCAGGAAAACCTTGGCCTAAGTTCTTCAGCTTCCAAGAGATGGTCTCTTATGAGAGATGGTCTCTTATaGCCCAAAAGTTTACTTATC +
Preference number: 4 (lower is better)
Translates to: SQENLGLSSSASKRWSLMRDGLL*PKSLLI
Trigger: GATAAGTAAACTTTTGGGTCATAAGAGACCATCTCT...CATAAGAGACCATCTCTTGGAAGCTGAAGAACTTAGGCCAAGGTTTTCCTGAGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR TCA 90 bp TCTCAGGAAAACCTTGGCCTAAGTTCTTCAGCTTCCAAGAGATGGTCTCTTATGTTTCTAAGAACAGAATaGTTTGTATGTCTACCAGGC +
Preference number: 4 (lower is better)
Translates to: SQENLGLSSSASKRWSLMFLRTE*FVCLPG
Trigger: GCCTGGTAGACATACAAATCATTCTGTTCTTAGAAA...CATAAGAGACCATCTCTTGGAAGCTGAAGAACTTAGGCCAAGGTTTTCCTGAGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR TCA 90 bp ACTGTCACTGGGTTGAACTGGTTTAACCATAACTATTCACCGAATAACCAGAAAGACTGGATATCTAAGTaGCCATCTACGGGGAAATAC +
Preference number: 4 (lower is better)
Translates to: TVTGLNWFNHNYSPNNQKDWISK*PSTGKY
Trigger: GTATTTCCCCGTAGATGGTCACTTAGATATCCAGTC...TTTCTGGTTATTCGGTGAATAGTTATGGTTAAACCAGTTCAACCCAGTGACAGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR TCA 90 bp TCTCAGGAAAACCTTGGCCTAAGTTCTTCAGCTTCCAAGAGATGGTCTCTTATGAAGCAAATACTCCAGTaGAAAATAGCCAGGTCTAAA +
Preference number: 4 (lower is better)
Translates to: SQENLGLSSSASKRWSLMKQILQ*KIARSK
Trigger: TTTAGACCTGGCTATTTTTCACTGGAGTATTTGCTT...CATAAGAGACCATCTCTTGGAAGCTGAAGAACTTAGGCCAAGGTTTTCCTGAGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR TCA 90 bp TCTCAGGAAAACCTTGGCCTAAGTTCTTCAGCTTCCAAGAGATGGTCTCTTATGGTTTTGGTCTTAGGTTaGAAATCTTGGTTTCTACTG +
Preference number: 4 (lower is better)
Translates to: SQENLGLSSSASKRWSLMVLVLG*KSWFLL
Trigger: CAGTAGAAACCAAGATTTTCAACCTAAGACCAAAAC...CATAAGAGACCATCTCTTGGAAGCTGAAGAACTTAGGCCAAGGTTTTCCTGAGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR CCA 90 bp CTACGGAGGAAGTGTTTCCAATACCCCAATTTGGGTGCACTTGAGAGAAAAACAAGATTCTGGTATAGCTaGTTCCCTGAATATGATATC +
Preference number: 4 (lower is better)
Translates to: LRRKCFQYPNLGALERKTRFWYS*FPEYDI
Trigger: GATATCATATTCAGGGAACCAGCTATACCAGAATCT...TGTTTTTCTCTCAAGTGCACCCAAATTGGGGTATTGGAAACACTTCCTCCGTAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR TCA 90 bp ACTGTCACTGGGTTGAACTGGTTTAACCATAACTATTCACCGAATAACCAGAAAGAATCTGCTGGAAAATaGGGCTCAGACAACCAAAAT +
Preference number: 4 (lower is better)
Translates to: TVTGLNWFNHNYSPNNQKESAGK*GSDNQN
Trigger: ATTTTGGTTGTCTGAGCCTCATTTTCCAGCAGATTC...TTTCTGGTTATTCGGTGAATAGTTATGGTTAAACCAGTTCAACCCAGTGACAGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR TCA 90 bp ACTGTCACTGGGTTGAACTGGTTTAACCATAACTATTCACCGAATAACCAGAAACAAAATACAAATGAGTaGGGTGAGGACAGAGCATCA +
Preference number: 4 (lower is better)
Translates to: TVTGLNWFNHNYSPNNQKQNTNE*GEDRAS
Trigger: TGATGCTCTGTCCTCACCTCACTCATTTGTATTTTG...TTTCTGGTTATTCGGTGAATAGTTATGGTTAAACCAGTTCAACCCAGTGACAGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR GCA 90 bp ACACATGATCCCAATCCAATTATGAGGAAAACAAGACAAATTCAAACAGAGGAGAAGTTTCTTTCGCATTaGAATGCCATGCTCCCTGCT +
Preference number: 4 (lower is better)
Translates to: THDPNPIMRKTRQIQTEEKFLSH*NAMLPA
Trigger: AGCAGGGAGCATGGCATTGCAATGCGAAAGAAACTT...CTCCTCTGTTTGAATTTGTCTTGTTTTCCTCATAATTGGATTGGGATCATGTGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000567593.5
CDS-3UTR CCA 90 bp CTACGGAGGAAGTGTTTCCAATACCCCAATTTGGGTGCACTTGAGAGAAAAACAGGATGTATCACCTTCTaGAGATGTAAAGTCAAAATA +
Preference number: 4 (lower is better)
Translates to: LRRKCFQYPNLGALERKTGCITF*RCKVKI
Trigger: TATTTTGACTTTACATCTCCAGAAGGTGATACATCC...TGTTTTTCTCTCAAGTGCACCCAAATTGGGGTATTGGAAACACTTCCTCCGTAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR TCA 90 bp ACTGTCACTGGGTTGAACTGGTTTAACCATAACTATTCACCGAATAACCAGAAACTACGAGGAATGGTGTaGGAAACAAGAATATCACAT +
Preference number: 4 (lower is better)
Translates to: TVTGLNWFNHNYSPNNQKLRGMV*ETRISH
Trigger: ATGTGATATTCTTGTTTCTCACACCATTCCTCGTAG...TTTCTGGTTATTCGGTGAATAGTTATGGTTAAACCAGTTCAACCCAGTGACAGT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR TCA 90 bp ACACATGATCCCAATCCAATTATGAGGAAAACAAGACAAATTCAAACAGAGGAGCAGGAGCCTAAAGAGTaGCAAGAACTAAGTGTAATG +
Preference number: 4 (lower is better)
Translates to: THDPNPIMRKTRQIQTEEQEPKE*QELSVM
Trigger: CATTACACTTAGTTCTTGTCACTCTTTAGGCTCCTG...CTCCTCTGTTTGAATTTGTCTTGTTTTCCTCATAATTGGATTGGGATCATGTGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000567593.5
CDS-3UTR GCA 90 bp ACTGTCACTGGGTTGAACTGGTTTAACCATAACTATTCACCGAATAACCAGAAAAATAAAGCATCCCTTTaGTTTCCCTTCACCACTTTC +
Preference number: 4 (lower is better)
Translates to: TVTGLNWFNHNYSPNNQKNKASL*FPFTTF
Trigger: GAAAGTGGTGAAGGGAAAGCAAAGGGATGCTTTATT...TTTCTGGTTATTCGGTGAATAGTTATGGTTAAACCAGTTCAACCCAGTGACAGT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR CCA 90 bp ACTGTCACTGGGTTGAACTGGTTTAACCATAACTATTCACCGAATAACCAGAAATCCAATACCCCAATTTaGGTGCACTTGAGAGAAAAA +
Preference number: 4 (lower is better)
Translates to: TVTGLNWFNHNYSPNNQKSNTPI*VHLREK
Trigger: TTTTTCTCTCAAGTGCACCCAAATTGGGGTATTGGA...TTTCTGGTTATTCGGTGAATAGTTATGGTTAAACCAGTTCAACCCAGTGACAGT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR CCA 90 bp AAACAAGACAAATTCAAACAGAGGAGCATTCTACCAAATACCTGGCCATTATGCATTCTACCAAATACCTaGCCATTATGCCTCAAACCT +
Preference number: 4 (lower is better)
Translates to: KQDKFKQRSILPNTWPLCILPNT*PLCLKP
Trigger: AGGTTTGAGGCATAATGGCCAGGTATTTGGTAGAAT...GCATAATGGCCAGGTATTTGGTAGAATGCTCCTCTGTTTGAATTTGTCTTGTTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000567593.5
CDS-3UTR TCA 90 bp ACTGTCACTGGGTTGAACTGGTTTAACCATAACTATTCACCGAATAACCAGAAAAAACTAATTGTGCTTTaGGCTAAAAACTCCATGGAG +
Preference number: 4 (lower is better)
Translates to: TVTGLNWFNHNYSPNNQKKLIVL*AKNSME
Trigger: CTCCATGGAGTTTTTAGCTCAAAGCACAATTAGTTT...TTTCTGGTTATTCGGTGAATAGTTATGGTTAAACCAGTTCAACCCAGTGACAGT
38% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR TCA 90 bp ACTGTCACTGGGTTGAACTGGTTTAACCATAACTATTCACCGAATAACCAGAAAAGTCTACACATAACCTaGATTCCATGTATCATGAAC +
Preference number: 4 (lower is better)
Translates to: TVTGLNWFNHNYSPNNQKSLHIT*IPCIMN
Trigger: GTTCATGATACATGGAATTCAGGTTATGTGTAGACT...TTTCTGGTTATTCGGTGAATAGTTATGGTTAAACCAGTTCAACCCAGTGACAGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR CCA 90 bp ACTGTCACTGGGTTGAACTGGTTTAACCATAACTATTCACCGAATAACCAGAAAGTCACTGGGTTGAACTaGTTTAACCATAACTATTCA +
Preference number: 4 (lower is better)
Translates to: TVTGLNWFNHNYSPNNQKVTGLN*FNHNYS
Trigger: TGAATAGTTATGGTTAAACCAGTTCAACCCAGTGAC...TTTCTGGTTATTCGGTGAATAGTTATGGTTAAACCAGTTCAACCCAGTGACAGT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR CCA 90 bp ACTGTCACTGGGTTGAACTGGTTTAACCATAACTATTCACCGAATAACCAGAAAGGCTTCCACTGCATATaGGAATTCAAAATATTTGGA +
Preference number: 4 (lower is better)
Translates to: TVTGLNWFNHNYSPNNQKGFHCI*EFKIFG
Trigger: TCCAAATATTTTGAATTCCCATATGCAGTGGAAGCC...TTTCTGGTTATTCGGTGAATAGTTATGGTTAAACCAGTTCAACCCAGTGACAGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR GCA 90 bp ACTGTCACTGGGTTGAACTGGTTTAACCATAACTATTCACCGAATAACCAGAAATCTCCAATTTTTATATaGATGCAAATCATCTGGGGA +
Preference number: 4 (lower is better)
Translates to: TVTGLNWFNHNYSPNNQKSPIFI*MQIIWG
Trigger: TCCCCAGATGATTTGCATGCATATAAAAATTGGAGA...TTTCTGGTTATTCGGTGAATAGTTATGGTTAAACCAGTTCAACCCAGTGACAGT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS TCA 90 bp CTAGGGAGCAGACAGCTGAACCGCTTGCCAGACGCCGAAACCCAGTaGCGCCCTCCACCGCTCCACCGTGCTCCCGGCTCCTCGCCCCCG +
Preference number: 5 (lower is better)
Translates to: LGSRQLNRLPDAETQ*RPPPLHRAPGSSPP
Trigger: CGGGGGCGAGGAGCCGGGAGCACGGTGGAGCGGTGGAGGGCGTCACTGGGTTTCGGCGTCTGGCAAGCGGTTCAGCTGTCTGCTCCCTAG
70% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000486645.5
ENST00000569187.5
ENST00000630396.1
CDS CCA 90 bp CGCACTGTGGGCGGGCATGTAAACTGGGATAGCCACTGTGGAAACTaGTATAGCAGTTCCCGACTCGTGGCCACACCGGGAGAACTGAAG +
Preference number: 5 (lower is better)
Translates to: RTVGGHVNWDSHCGN*YSSSRLVATPGELK
Trigger: CTTCAGTTCTCCCGGTGTGGCCACGAGTCGGGAACTGCTATACCAGTTTCCACAGTGGCTATCCCAGTTTACATGCCCGCCCACAGTGCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000568228.5
CDS-3UTR CAA 90 bp TGGTCCTGTTTTCTACGTACTGTCGTCCTAGCTACTCAGGAGGCTGAGGTGGGAAGACAGCTGAACCGCTaGCCAGACGCCGAAACCCAG +
Preference number: 5 (lower is better)
Translates to: WSCFLRTVVLATQEAEVGRQLNR*PDAETQ
Trigger: CTGGGTTTCGGCGTCTGGCAAGCGGTTCAGCTGTCT...TCCCACCTCAGCCTCCTGAGTAGCTAGGACGACAGTACGTAGAAAACAGGACCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000486645.5
ENST00000562713.3
ENST00000565925.5
ENST00000570195.5
CDS TCA 90 bp CTGTCCTCAAGTGATCCTCAGCCTCCCAAAGTGTTGGGACAGGCATaGGCTACCGTGCCCCACCTGGGCTTAACCTACTCTAACTCAGAA +
Preference number: 5 (lower is better)
Translates to: LSSSDPQPPKVLGQA*ATVPHLGLTYSNSE
Trigger: TTCTGAGTTAGAGTAGGTTAAGCCCAGGTGGGGCACGGTAGCTCATGCCTGTCCCAACACTTTGGGAGGCTGAGGATCACTTGAGGACAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000563779.5
CDS-3UTR CAA 90 bp GCTGGTAAAGGGGAGACAGTACTAAACGCCCTGCCCAACAAATACTCAGAATCCAGACAGCTGAACCGCTaGCCAGACGCCGAAACCCAG +
Preference number: 5 (lower is better)
Translates to: AGKGETVLNALPNKYSESRQLNR*PDAETQ
Trigger: CTGGGTTTCGGCGTCTGGCAAGCGGTTCAGCTGTCT...GGATTCTGAGTATTTGTTGGGCAGGGCGTTTAGTACTGTCTCCCCTTTACCAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000219400.8
ENST00000486645.5
ENST00000570086.5
ENST00000570195.5
CDS-3UTR CAA 90 bp CCCCACTCTCCCTCCAGCTTCTTCGGCTTCCACTGCATATGGGAATTCAAAATAATGCCACCCTCCCCCTaGCTCACTGTGCTCCAGTTC +
Preference number: 5 (lower is better)
Translates to: PHSPSSFFGFHCIWEFKIMPPSP*LTVLQF
Trigger: GAACTGGAGCACAGTGAGCAAGGGGGAGGGTGGCAT...TATTTTGAATTCCCATATGCAGTGGAAGCCGAAGAAGCTGGAGGGAGAGTGGGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR CAA 90 bp TCCTCTGGAGGATTAAAAAGTTTCTTTCGCATTGCAATGCCATGCTCCCTGCTCAGACAGCTGAACCGCTaGCCAGACGCCGAAACCCAG +
Preference number: 5 (lower is better)
Translates to: SSGGLKSFFRIAMPCSLLRQLNR*PDAETQ
Trigger: CTGGGTTTCGGCGTCTGGCAAGCGGTTCAGCTGTCT...GAGCAGGGAGCATGGCATTGCAATGCGAAAGAAACTTTTTAATCCTCCAGAGGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENST00000486645.5
ENST00000565925.5
ENST00000568228.5
ENST00000570086.5
ENST00000570195.5
CDS-3UTR CAA 90 bp TGGTCCTGTTTTCTACGTACTGTCGTCCTAGCTACTCAGGAGGCTGAGGTGGGAATGGTGAAGTCAGGTTaGCTGGTAAAGGGGAGACAG +
Preference number: 5 (lower is better)
Translates to: WSCFLRTVVLATQEAEVGMVKSG*LVKGRQ
Trigger: CTGTCTCCCCTTTACCAGCAAACCTGACTTCACCAT...TCCCACCTCAGCCTCCTGAGTAGCTAGGACGACAGTACGTAGAAAACAGGACCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000486645.5
ENST00000570195.5
CDS-3UTR CAA 90 bp CACGTCTACTGGATTGCCCCCAGCAATCAGGTTGAGAAGGGTCTTAAGGGAAACCCCCCAGCAATCAGGTaGAGAAGGGTCTTAAGGGAA +
Preference number: 5 (lower is better)
Translates to: HVYWIAPSNQVEKGLKGNPPAIR*RRVLRE
Trigger: TTCCCTTAAGACCCTTCTCAACCTGATTGCTGGGGG...GTTTCCCTTAAGACCCTTCTCAACCTGATTGCTGGGGGCAATCCAGTAGACGTG
52% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt.
Matches the following 2 transcripts:
ENST00000561614.5
ENST00000565613.5
CDS-3UTR CAA 90 bp CACGTCTACTGGATTGCCCCCAGCAATCAGGTTGAGAAGGGTCTTAAGGGAAACATCACGTCTACTGGATaGCCCCCAGCAATCAGGTTG +
Preference number: 5 (lower is better)
Translates to: HVYWIAPSNQVEKGLKGNITSTG*PPAIRL
Trigger: CAACCTGATTGCTGGGGGCAATCCAGTAGACGTGAT...GTTTCCCTTAAGACCCTTCTCAACCTGATTGCTGGGGGCAATCCAGTAGACGTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000561614.5
ENST00000565613.5
CDS-3UTR CAA 90 bp CCCCACTCTCCCTCCAGCTTCTTCGGCTTCCACTGCATATGGGAATTCAAAATACCATGCTCCCTGCTCTaGGTCCTGTTTTCTACGTAC +
Preference number: 5 (lower is better)
Translates to: PHSPSSFFGFHCIWEFKIPCSLL*VLFSTY
Trigger: GTACGTAGAAAACAGGACCAAGAGCAGGGAGCATGG...TATTTTGAATTCCCATATGCAGTGGAAGCCGAAGAAGCTGGAGGGAGAGTGGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR CAA 90 bp CGTACTTTAATCACGTCTACTGGATTGCCCCCAGCAATCAGGTTGAGAAGGGTCATCACGTCTACTGGATaGCCCCCAGCAATCAGGTTG +
Preference number: 5 (lower is better)
Translates to: RTLITSTGLPPAIRLRRVITSTG*PPAIRL
Trigger: CAACCTGATTGCTGGGGGCAATCCAGTAGACGTGAT...GACCCTTCTCAACCTGATTGCTGGGGGCAATCCAGTAGACGTGATTAAAGTACG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000561614.5
ENST00000565613.5
CDS-3UTR CAA 90 bp TTAAAATATGCTAAGACATCTCCAAAGGAAGTCCAGATGGTCCCTGTCGTCCTAAGACAGCTGAACCGCTaGCCAGACGCCGAAACCCAG +
Preference number: 5 (lower is better)
Translates to: LKYAKTSPKEVQMVPVVLRQLNR*PDAETQ
Trigger: CTGGGTTTCGGCGTCTGGCAAGCGGTTCAGCTGTCT...TAGGACGACAGGGACCATCTGGACTTCCTTTGGAGATGTCTTAGCATATTTTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000565613.5
CDS-3UTR CAA 90 bp GCTGGTAAAGGGGAGACAGTACTAAACGCCCTGCCCAACAAATACTCAGAATCCATGGTGAAGTCAGGTTaGCTGGTAAAGGGGAGACAG +
Preference number: 5 (lower is better)
Translates to: AGKGETVLNALPNKYSESMVKSG*LVKGRQ
Trigger: CTGTCTCCCCTTTACCAGCAAACCTGACTTCACCAT...GGATTCTGAGTATTTGTTGGGCAGGGCGTTTAGTACTGTCTCCCCTTTACCAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENST00000219400.8
ENST00000486645.5
ENST00000561614.5
ENST00000564249.5
ENST00000570086.5
ENST00000570195.5
CDS-3UTR CAA 90 bp CCCCACTCTCCCTCCAGCTTCTTCGGCTTCCACTGCATATGGGAATTCAAAATACCTAAGCTCAGGAATTaGAGATCAGCCTGGCCAACA +
Preference number: 5 (lower is better)
Translates to: PHSPSSFFGFHCIWEFKIPKLRN*RSAWPT
Trigger: TGTTGGCCAGGCTGATCTCAAATTCCTGAGCTTAGG...TATTTTGAATTCCCATATGCAGTGGAAGCCGAAGAAGCTGGAGGGAGAGTGGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR CAA 90 bp AACGGTATCAGCCCTAGTGATTTGGTGCCTTCTACCAAACTACGGAGGAAGTGTGCCCGGAGGGCCAATTaGAGAACAGCAATTGGTACT +
Preference number: 5 (lower is better)
Translates to: NGISPSDLVPSTKLRRKCARRAN*RTAIGT
Trigger: AGTACCAATTGCTGTTCTCAAATTGGCCCTCCGGGC...ACACTTCCTCCGTAGTTTGGTAGAAGGCACCAAATCACTAGGGCTGATACCGTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR CAA 90 bp CTACGGAGGAAGTGTTTCCAATACCCCAATTTGGGTGCACTTGAGAGAAAAACATTGCCCAAGCTGGTCTaGAACTCCCTGGCCTCAAGC +
Preference number: 5 (lower is better)
Translates to: LRRKCFQYPNLGALERKTLPKLV*NSLASS
Trigger: GCTTGAGGCCAGGGAGTTCAAGACCAGCTTGGGCAA...TGTTTTTCTCTCAAGTGCACCCAAATTGGGGTATTGGAAACACTTCCTCCGTAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR CAA 90 bp TGGATTGCCCCCAGCAATCAGGTTGAGAAGGGTCTTAAGGGAAACTCTTCAGAAATGGTGAAGTCAGGTTaGCTGGTAAAGGGGAGACAG +
Preference number: 5 (lower is better)
Translates to: WIAPSNQVEKGLKGNSSEMVKSG*LVKGRQ
Trigger: CTGTCTCCCCTTTACCAGCAAACCTGACTTCACCAT...TTCTGAAGAGTTTCCCTTAAGACCCTTCTCAACCTGATTGCTGGGGGCAATCCA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000561614.5
CDS-3UTR CAA 90 bp CCCCACTCTCCCTCCAGCTTCTTCGGCTTCCACTGCATATGGGAATTCAAAATACTGCTGACTTCCAGATaGTCACAGGTCTCAGAAACA +
Preference number: 5 (lower is better)
Translates to: PHSPSSFFGFHCIWEFKILLTSR*SQVSET
Trigger: TGTTTCTGAGACCTGTGACAATCTGGAAGTCAGCAG...TATTTTGAATTCCCATATGCAGTGGAAGCCGAAGAAGCTGGAGGGAGAGTGGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR CAA 90 bp TCCTCTGGAGGATTAAAAAGTTTCTTTCGCATTGCAATGCCATGCTCCCTGCTCATGGTGAAGTCAGGTTaGCTGGTAAAGGGGAGACAG +
Preference number: 5 (lower is better)
Translates to: SSGGLKSFFRIAMPCSLLMVKSG*LVKGRQ
Trigger: CTGTCTCCCCTTTACCAGCAAACCTGACTTCACCAT...GAGCAGGGAGCATGGCATTGCAATGCGAAAGAAACTTTTTAATCCTCCAGAGGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000486645.5
ENST00000561614.5
ENST00000570086.5
ENST00000570195.5
CDS-3UTR CAA 90 bp AACGGTATCAGCCCTAGTGATTTGGTGCCTTCTACCAAACTACGGAGGAAGTGTAATCTCTTCCTTCACTaGGTATCCTGCACAGACCCT +
Preference number: 5 (lower is better)
Translates to: NGISPSDLVPSTKLRRKCNLFLH*VSCTDP
Trigger: AGGGTCTGTGCAGGATACCAAGTGAAGGAAGAGATT...ACACTTCCTCCGTAGTTTGGTAGAAGGCACCAAATCACTAGGGCTGATACCGTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR CAA 90 bp GCTGGTAAAGGGGAGACAGTACTAAACGCCCTGCCCAACAAATACTCAGAATCCGATCAATGGCATAATTaGGTTCAGCCCAAGCCCTTT +
Preference number: 5 (lower is better)
Translates to: AGKGETVLNALPNKYSESDQWHN*VQPKPF
Trigger: AAAGGGCTTGGGCTGAACCAAATTATGCCATTGATC...GGATTCTGAGTATTTGTTGGGCAGGGCGTTTAGTACTGTCTCCCCTTTACCAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR CAA 90 bp CTACGGAGGAAGTGTTTCCAATACCCCAATTTGGGTGCACTTGAGAGAAAAACAAGGCACGAGAATTGCTaGAAGCCAGGAGGTGGAAGT +
Preference number: 5 (lower is better)
Translates to: LRRKCFQYPNLGALERKTRHENC*KPGGGS
Trigger: ACTTCCACCTCCTGGCTTCAAGCAATTCTCGTGCCT...TGTTTTTCTCTCAAGTGCACCCAAATTGGGGTATTGGAAACACTTCCTCCGTAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR CAA 90 bp TTTTCTACGTACTTTAATCACGTCTACTGGATTGCCCCCAGCAATCAGGTTGAGCCCCCAGCAATCAGGTaGAGAAGGGTCTTAAGGGAA +
Preference number: 5 (lower is better)
Translates to: FSTYFNHVYWIAPSNQVEPPAIR*RRVLRE
Trigger: TTCCCTTAAGACCCTTCTCAACCTGATTGCTGGGGG...CTCAACCTGATTGCTGGGGGCAATCCAGTAGACGTGATTAAAGTACGTAGAAAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000561614.5
ENST00000565613.5
CDS CCA 90 bp TACCCATGTAAGAAACCTGCACATTACTTATATCCAAAATCTACGTaGTGTACTACTCCCAGACTCCGTACGCCTTCACGTCCTCCTCCA +
Preference number: 5 (lower is better)
Translates to: YPCKKPAHYLYPKST*CTTPRLRTPSRPPP
Trigger: TGGAGGAGGACGTGAAGGCGTACGGAGTCTGGGAGTAGTACACCACGTAGATTTTGGATATAAGTAATGTGCAGGTTTCTTACATGGGTA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000565914.5
CDS-3UTR CAA 90 bp TCTCAGGAAAACCTTGGCCTAAGTTCTTCAGCTTCCAAGAGATGGTCTCTTATGATGGTGAAGTCAGGTTaGCTGGTAAAGGGGAGACAG +
Preference number: 5 (lower is better)
Translates to: SQENLGLSSSASKRWSLMMVKSG*LVKGRQ
Trigger: CTGTCTCCCCTTTACCAGCAAACCTGACTTCACCAT...CATAAGAGACCATCTCTTGGAAGCTGAAGAACTTAGGCCAAGGTTTTCCTGAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR CAA 90 bp CTACGGAGGAAGTGTTTCCAATACCCCAATTTGGGTGCACTTGAGAGAAAAACAAGGTCTCAGAAACACTaGGCAGAAGGAACACTGGTG +
Preference number: 5 (lower is better)
Translates to: LRRKCFQYPNLGALERKTRSQKH*AEGTLV
Trigger: CACCAGTGTTCCTTCTGCCAAGTGTTTCTGAGACCT...TGTTTTTCTCTCAAGTGCACCCAAATTGGGGTATTGGAAACACTTCCTCCGTAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR CAA 90 bp CCCCACTCTCCCTCCAGCTTCTTCGGCTTCCACTGCATATGGGAATTCAAAATAGAGAGAAAAACAATATaGAGGGGGCCCTTACTTTGT +
Preference number: 5 (lower is better)
Translates to: PHSPSSFFGFHCIWEFKIERKTI*RGPLLC
Trigger: ACAAAGTAAGGGCCCCCTCAATATTGTTTTTCTCTC...TATTTTGAATTCCCATATGCAGTGGAAGCCGAAGAAGCTGGAGGGAGAGTGGGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR CAA 90 bp TCTCAGGAAAACCTTGGCCTAAGTTCTTCAGCTTCCAAGAGATGGTCTCTTATGTCCCTACTGTCAGTCTaGTTCTCCATCTCCTGTCCT +
Preference number: 5 (lower is better)
Translates to: SQENLGLSSSASKRWSLMSLLSV*FSISCP
Trigger: AGGACAGGAGATGGAGAACAAGACTGACAGTAGGGA...CATAAGAGACCATCTCTTGGAAGCTGAAGAACTTAGGCCAAGGTTTTCCTGAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR CAA 90 bp GCTGGTAAAGGGGAGACAGTACTAAACGCCCTGCCCAACAAATACTCAGAATCCGTTTTGAAGAGATATTaGAACACCCATGTTCACGGC +
Preference number: 5 (lower is better)
Translates to: AGKGETVLNALPNKYSESVLKRY*NTHVHG
Trigger: GCCGTGAACATGGGTGTTCAAATATCTCTTCAAAAC...GGATTCTGAGTATTTGTTGGGCAGGGCGTTTAGTACTGTCTCCCCTTTACCAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000564249.5
CDS-3UTR CAA 90 bp ACTGTCACTGGGTTGAACTGGTTTAACCATAACTATTCACCGAATAACCAGAAAGGTCAGCTACTGACATaGGCCTACAGGGCCTTAGCT +
Preference number: 5 (lower is better)
Translates to: TVTGLNWFNHNYSPNNQKGQLLT*AYRALA
Trigger: AGCTAAGGCCCTGTAGGCCAATGTCAGTAGCTGACC...TTTCTGGTTATTCGGTGAATAGTTATGGTTAAACCAGTTCAACCCAGTGACAGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR CAA 90 bp TCTCAGGAAAACCTTGGCCTAAGTTCTTCAGCTTCCAAGAGATGGTCTCTTATGATCAGCCCTAGTGATTaGGTGCCTTCTACCAAACTA +
Preference number: 5 (lower is better)
Translates to: SQENLGLSSSASKRWSLMISPSD*VPSTKL
Trigger: TAGTTTGGTAGAAGGCACCAAATCACTAGGGCTGAT...CATAAGAGACCATCTCTTGGAAGCTGAAGAACTTAGGCCAAGGTTTTCCTGAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR CAA 90 bp GCTGGTAAAGGGGAGACAGTACTAAACGCCCTGCCCAACAAATACTCAGAATCCCTTAGGTTGAAAATCTaGGTTTCTACTGACACTAAC +
Preference number: 5 (lower is better)
Translates to: AGKGETVLNALPNKYSESLRLKI*VSTDTN
Trigger: GTTAGTGTCAGTAGAAACCAAGATTTTCAACCTAAG...GGATTCTGAGTATTTGTTGGGCAGGGCGTTTAGTACTGTCTCCCCTTTACCAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS GCA 90 bp GGAGTCAAAAAGTTATATGTGGACTTTCAACTGCATGGGGGTCAGTaGCCCGAACTTCCAAGCTGTTCAAGGATCAACTATACAAATGAA +
Preference number: 5 (lower is better)
Translates to: GVKKLYVDFQLHGGQ*PELPSCSRINYTNE
Trigger: TTCATTTGTATAGTTGATCCTTGAACAGCTTGGAAGTTCGGGGCACTGACCCCCATGCAGTTGAAAGTCCACATATAACTTTTTGACTCC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000566918.5
CDS-3UTR CAA 90 bp ACTGTCACTGGGTTGAACTGGTTTAACCATAACTATTCACCGAATAACCAGAAACGAAAGTCCAGCTTCTaGAATACCTCCTGTGATGGG +
Preference number: 5 (lower is better)
Translates to: TVTGLNWFNHNYSPNNQKRKSSF*NTSCDG
Trigger: CCCATCACAGGAGGTATTCAAGAAGCTGGACTTTCG...TTTCTGGTTATTCGGTGAATAGTTATGGTTAAACCAGTTCAACCCAGTGACAGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR CAA 90 bp TCTCAGGAAAACCTTGGCCTAAGTTCTTCAGCTTCCAAGAGATGGTCTCTTATGAAACACTCTCCCAGATaGGACAAGAAGGTAAGTAAG +
Preference number: 5 (lower is better)
Translates to: SQENLGLSSSASKRWSLMKHSPR*DKKVSK
Trigger: CTTACTTACCTTCTTGTCCAATCTGGGAGAGTGTTT...CATAAGAGACCATCTCTTGGAAGCTGAAGAACTTAGGCCAAGGTTTTCCTGAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR CAA 90 bp ACTGTCACTGGGTTGAACTGGTTTAACCATAACTATTCACCGAATAACCAGAAAGGTCCTTTACAGGATTaGGGCAATCTTCCCTTTTGC +
Preference number: 5 (lower is better)
Translates to: TVTGLNWFNHNYSPNNQKGPLQD*GNLPFC
Trigger: GCAAAAGGGAAGATTGCCCAAATCCTGTAAAGGACC...TTTCTGGTTATTCGGTGAATAGTTATGGTTAAACCAGTTCAACCCAGTGACAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR CAA 90 bp ACTGTCACTGGGTTGAACTGGTTTAACCATAACTATTCACCGAATAACCAGAAAGGTACTGTCACTGGGTaGAACTGGTTTAACCATAAC +
Preference number: 5 (lower is better)
Translates to: TVTGLNWFNHNYSPNNQKGTVTG*NWFNHN
Trigger: GTTATGGTTAAACCAGTTCAACCCAGTGACAGTACC...TTTCTGGTTATTCGGTGAATAGTTATGGTTAAACCAGTTCAACCCAGTGACAGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR CAA 90 bp ACTGTCACTGGGTTGAACTGGTTTAACCATAACTATTCACCGAATAACCAGAAATTCCAATACCCCAATTaGGGTGCACTTGAGAGAAAA +
Preference number: 5 (lower is better)
Translates to: TVTGLNWFNHNYSPNNQKFQYPN*GALERK
Trigger: TTTTCTCTCAAGTGCACCCAAATTGGGGTATTGGAA...TTTCTGGTTATTCGGTGAATAGTTATGGTTAAACCAGTTCAACCCAGTGACAGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS GCA 90 bp AATGTTGTGATATACACCCGAGCTTTTCTTCTGAACCGAGTAAGTTaGAGATATGATGCACGTTTCATTTTTGTGACATTCCTTAAGCAA +
Preference number: 5 (lower is better)
Translates to: NVVIYTRAFLLNRVS*RYDARFIFVTFLKQ
Trigger: TTGCTTAAGGAATGTCACAAAAATGAAACGTGCATCATATCTGCAACTTACTCGGTTCAGAAGAAAAGCTCGGGTGTATATCACAACATT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000570195.5
ENST00000630396.1
CDS-3UTR CAA 90 bp ACTGTCACTGGGTTGAACTGGTTTAACCATAACTATTCACCGAATAACCAGAAATCACTAGCATTTTATTaGTCAAACTCCCTTCCTAGA +
Preference number: 5 (lower is better)
Translates to: TVTGLNWFNHNYSPNNQKSLAFY*SNSLPR
Trigger: TCTAGGAAGGGAGTTTGACAAATAAAATGCTAGTGA...TTTCTGGTTATTCGGTGAATAGTTATGGTTAAACCAGTTCAACCCAGTGACAGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR CAA 90 bp ACTGTCACTGGGTTGAACTGGTTTAACCATAACTATTCACCGAATAACCAGAAAAACTTCAGAGCCACATaGCAATTAAAAAGCTGTCTA +
Preference number: 5 (lower is better)
Translates to: TVTGLNWFNHNYSPNNQKNFRAT*QLKSCL
Trigger: TAGACAGCTTTTTAATTGCAATGTGGCTCTGAAGTT...TTTCTGGTTATTCGGTGAATAGTTATGGTTAAACCAGTTCAACCCAGTGACAGT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS-3UTR CAA 90 bp ACTGTCACTGGGTTGAACTGGTTTAACCATAACTATTCACCGAATAACCAGAAAAATTTCGTAACAGCTTaGCCCTTAAGATTTTGCTGT +
Preference number: 5 (lower is better)
Translates to: TVTGLNWFNHNYSPNNQKNFVTA*PLRFCC
Trigger: ACAGCAAAATCTTAAGGGCAAAGCTGTTACGAAATT...TTTCTGGTTATTCGGTGAATAGTTATGGTTAAACCAGTTCAACCCAGTGACAGT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000219400.8
CDS CCA 90 bp TATTCAGCCTTAAAATGGAAGGAAATTCTGGCATATGCTACAACATaGATGAAATGTGAGGACATTCTGAATGAAATAAGCCAGTCAAAA +
Preference number: 5 (lower is better)
Translates to: YSALKWKEILAYATT*MKCEDILNEISQSK
Trigger: TTTTGACTGGCTTATTTCATTCAGAATGTCCTCACATTTCATCCATGTTGTAGCATATGCCAGAATTTCCTTCCATTTTAAGGCTGAATA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000563779.5
CDS-3UTR CAA 90 bp CCGAAAACACATGATCCCAATCCAATTATGAGGAAAACAAGACAAATTCAAACAAAAAATTTCAGAATGTaGTGCTCTGTGGTCTTCATC +
Preference number: 5 (lower is better)
Translates to: PKTHDPNPIMRKTRQIQTKNFRM*CSVVFI
Trigger: GATGAAGACCACAGAGCACAACATTCTGAAATTTTT...TGTTTGAATTTGTCTTGTTTTCCTCATAATTGGATTGGGATCATGTGTTTTCGG
36% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000567593.5
CDS TCA 72 bp AGACAGCTGAACCGCTTGCCAGACGCCGAAACCCAGTaGCGCCCTCCACCGCTCCACCGTGCTCCCGGCTCC +
Preference number: 6 (lower is better)
Translates to: RQLNRLPDAETQ*RPPPLHRAPGS
Trigger: GGAGCCGGGAGCACGGTGGAGCGGTGGAGGGCGTCACTGGGTTTCGGCGTCTGGCAAGCGGTTCAGCTGTCT
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENST00000486645.5
ENST00000562828.5
ENST00000565108.5
ENST00000565650.5
ENST00000568228.5
ENST00000569187.5
ENST00000630396.1
CDS CCA 72 bp GGCGGGCATGTAAACTGGGATAGCCACTGTGGAAACTaGTATAGCAGTTCCCGACTCGTGGCCACACCGGGA +
Preference number: 6 (lower is better)
Translates to: GGHVNWDSHCGN*YSSSRLVATPG
Trigger: TCCCGGTGTGGCCACGAGTCGGGAACTGCTATACCAGTTTCCACAGTGGCTATCCCAGTTTACATGCCCGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000568228.5
CDS TCA 72 bp AGTGATCCTCAGCCTCCCAAAGTGTTGGGACAGGCATaGGCTACCGTGCCCCACCTGGGCTTAACCTACTCT +
Preference number: 6 (lower is better)
Translates to: SDPQPPKVLGQA*ATVPHLGLTYS
Trigger: AGAGTAGGTTAAGCCCAGGTGGGGCACGGTAGCTCATGCCTGTCCCAACACTTTGGGAGGCTGAGGATCACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000563779.5
CDS GCA 72 bp GATGCATCTTTAGGAGATGAGGATGGATCACAGCAGTaGAACCTGCATGATGGGATCAACAGTACCCCAAAC +
Preference number: 6 (lower is better)
Translates to: DASLGDEDGSQQ*NLHDGINSTPN
Trigger: GTTTGGGGTACTGTTGATCCCATCATGCAGGTTGCACTGCTGTGATCCATCCTCATCTCCTAAAGATGCATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000562713.3
ENST00000565914.5
CDS GCA 72 bp GATGCATCTTTAGGAGATGAGGATGGATCACAGCAGTaGAACCTGTGGATACAAGAGTGTCTTGAATATGCA +
Preference number: 6 (lower is better)
Translates to: DASLGDEDGSQQ*NLWIQECLEYA
Trigger: TGCATATTCAAGACACTCTTGTATCCACAGGTTGCACTGCTGTGATCCATCCTCATCTCCTAAAGATGCATC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000563779.5
ENST00000566047.5
ENST00000569666.5
CDS CCA 72 bp AAGAAACCTGCACATTACTTATATCCAAAATCTACGTaGTGTACTACTCCCAGACTCCGTACGCCTTCACGT +
Preference number: 6 (lower is better)
Translates to: KKPAHYLYPKST*CTTPRLRTPSR
Trigger: ACGTGAAGGCGTACGGAGTCTGGGAGTAGTACACCACGTAGATTTTGGATATAAGTAATGTGCAGGTTTCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000565914.5
CDS CCA 72 bp GTTTCTTTCGCATTGCAATGCCATGCTCCCTGCTCTTaGTCCTGTTTTCTACGTAATTTTTGTGACATTCCT +
Preference number: 6 (lower is better)
Translates to: VSFALQCHAPCS*SCFLRNFCDIP
Trigger: AGGAATGTCACAAAAATTACGTAGAAAACAGGACCAAGAGCAGGGAGCATGGCATTGCAATGCGAAAGAAAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000564174.5
ENST00000565108.5
ENST00000566047.5
CDS TCA 72 bp ATCACAGCAGTGCAACCTGTGGATACAAGAGTGTCTTaGATATGCATAAACACATTTGTTACGCCACCTAAA +
Preference number: 6 (lower is better)
Translates to: ITAVQPVDTRVS*ICINTFVTPPK
Trigger: TTTAGGTGGCGTAACAAATGTGTTTATGCATATTCAAGACACTCTTGTATCCACAGGTTGCACTGCTGTGAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000563779.5
ENST00000566047.5
ENST00000569666.5
CDS CCA 72 bp GGCTTTCAGACAACAGGAAACTCTCAGACAAGTTTTTaGGGAGTCAAAAAGTTATATGTGGACTTTCAACTG +
Preference number: 6 (lower is better)
Translates to: GFQTTGNSQTSF*GVKKLYVDFQL
Trigger: CAGTTGAAAGTCCACATATAACTTTTTGACTCCCCAAAAACTTGTCTGAGAGTTTCCTGTTGTCTGAAAGCC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000566918.5
CDS CCA 72 bp TCCCTGAACTTAAGTTTAATTGGATCATCCACAAGGTaGAAAATTAGCAGCCAAGGTCAAAGGAAAAACATC +
Preference number: 6 (lower is better)
Translates to: SLNLSLIGSSTR*KISSQGQRKNI
Trigger: GATGTTTTTCCTTTGACCTTGGCTGCTAATTTTCCACCTTGTGGATGATCCAATTAAACTTAAGTTCAGGGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000563779.5
CDS CCA 72 bp TTAAAATGGAAGGAAATTCTGGCATATGCTACAACATaGATGAAATGTGAGGACATTCTGAATGAAATAAGC +
Preference number: 6 (lower is better)
Translates to: LKWKEILAYATT*MKCEDILNEIS
Trigger: GCTTATTTCATTCAGAATGTCCTCACATTTCATCCATGTTGTAGCATATGCCAGAATTTCCTTCCATTTTAA
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000563779.5