RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CLRN1 (Homo sapiens)

Ensembl gene IDs: ENSG00000163646

Ensembl transcript IDs: ENST00000295911.6, ENST00000327047.6, ENST00000328863.8, ENST00000468836.2, ENST00000472224.1, ENST00000485607.1, ENST00000644099.1, ENST00000645441.1

Found 217 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GAAGACAGAGAGGAATCCAATAAGAGTGCAGGGGGTACCTGGCCTTaGGGACCTCCAACCAACTCCTCACGCAGGAGACGGTCCTTGTCC +
Preference number: 1 (lower is better)
Translates to: EDREESNKSAGGTWP*GPPTNSSRRRRSLS
Trigger: GGACAAGGACCGTCTCCTGCGTGAGGAGTTGGTTGGAGGTCCCCAAGGCCAGGTACCCCCTGCACTCTTATTGGATTCCTCTCTGTCTTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000295911.6
3UTR CCA 90 bp CTCCAAGAAGACAGAGAGGAATCCAATAAGAGTGCAGGGGGTACCTaGCCTTGGGGACCTCCAACCAACTCCTCACGCAGGAGACGGTCC +
Preference number: 1 (lower is better)
Translates to: LQEDREESNKSAGGT*PWGPPTNSSRRRRS
Trigger: GGACCGTCTCCTGCGTGAGGAGTTGGTTGGAGGTCCCCAAGGCCAGGTACCCCCTGCACTCTTATTGGATTCCTCTCTGTCTTCTTGGAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000295911.6
3UTR CCA 90 bp ACGGTCCTTGTCCTCCTAGCCCACTCATTTCCAGTGCTTTTGTACTaGACCATTTCAGCTAAAGACTTACAGAACCGGGCTCTAGCCTGT +
Preference number: 1 (lower is better)
Translates to: TVLVLLAHSFPVLLY*TISAKDLQNRALAC
Trigger: ACAGGCTAGAGCCCGGTTCTGTAAGTCTTTAGCTGAAATGGTCCAGTACAAAAGCACTGGAAATGAGTGGGCTAGGAGGACAAGGACCGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000295911.6
3UTR CCA 90 bp AAACAAGATGGACAAGATTCCTGTTGTCTCACAGAGCTTATAACCTaGTTGCTGCTGCAGGGCCTGCATGGAGTTTACTCCTCACAGCAC +
Preference number: 1 (lower is better)
Translates to: KQDGQDSCCLTELIT*LLLQGLHGVYSSQH
Trigger: GTGCTGTGAGGAGTAAACTCCATGCAGGCCCTGCAGCAGCAACCAGGTTATAAGCTCTGTGAGACAACAGGAATCTTGTCCATCTTGTTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000645441.1
3UTR TCA 90 bp TCTGGAAACTCGGTGTGTTCTGATGTCTGCTGGCGAATAGCGAATTaGCACCAGAGCAAGTTATTTCTCAGGTATACGGTTGTTTCATCC +
Preference number: 1 (lower is better)
Translates to: SGNSVCSDVCWRIAN*HQSKLFLRYTVVSS
Trigger: GGATGAAACAACCGTATACCTGAGAAATAACTTGCTCTGGTGTCAATTCGCTATTCGCCAGCAGACATCAGAACACACCGAGTTTCCAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000295911.6
ENST00000327047.6
3UTR TCA 90 bp CCTGATTTAAGGGGAAAAACCAGCATCTGGAAACTCGGTGTGTTCTaGTGTCTGCTGGCGAATAGCGAATTGACACCAGAGCAAGTTATT +
Preference number: 1 (lower is better)
Translates to: PDLRGKTSIWKLGVF*CLLANSELTPEQVI
Trigger: AATAACTTGCTCTGGTGTCAATTCGCTATTCGCCAGCAGACATCAGAACACACCGAGTTTCCAGATGCTGGTTTTTCCCCTTAAATCAGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000295911.6
3UTR TCA 90 bp ATATATATATGGAGTAACAATTTGTCGATTCTAGTCAACTGCCTTTaGCTACCTGGGTCAAGCAATTTCCCACCAGATAAAACAACTTTT +
Preference number: 1 (lower is better)
Translates to: IYIWSNNLSILVNCL*LPGSSNFPPDKTTF
Trigger: AAAAGTTGTTTTATCTGGTGGGAAATTGCTTGACCCAGGTAGTCAAAGGCAGTTGACTAGAATCGACAAATTGTTACTCCATATATATAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000327047.6
3UTR-3UTR GCA 90 bp AGGGGGTACCTGGCCTTGGGGACCTCCAACCAACTCCTCACGCAGGAGACGGTCCTGCTTTTTCCTTGGTaGTTTCTGGAGGACAGCAGG +
Preference number: 2 (lower is better)
Translates to: RGYLALGTSNQLLTQETVLLFPW*FLEDSR
Trigger: CCTGCTGTCCTCCAGAAAGCACCAAGGAAAAAGCAG...GACCGTCTCCTGCGTGAGGAGTTGGTTGGAGGTCCCCAAGGCCAGGTACCCCCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000295911.6
3UTR-3UTR TCA 90 bp CTGGTTGCTGCTGCAGGGCCTGCATGGAGTTTACTCCTCACAGCACTAAAGCAGTTGAGCAGGGCAGGCTaGGTAAATGGGGTACCCCTG +
Preference number: 2 (lower is better)
Translates to: LVAAAGPAWSLLLTALKQLSRAG*VNGVPL
Trigger: CAGGGGTACCCCATTTACTCAGCCTGCCCTGCTCAA...CTGCTTTAGTGCTGTGAGGAGTAAACTCCATGCAGGCCCTGCAGCAGCAACCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000645441.1
3UTR-3UTR TCA 90 bp GGGTACCTGGCCTTGGGGACCTCCAACCAACTCCTCACGCAGGAGACGGTCCTTTCCAGGTGTATTTCCTaGTTTAAGGGGAAAAACCAG +
Preference number: 2 (lower is better)
Translates to: GYLALGTSNQLLTQETVLSRCIS*FKGKNQ
Trigger: CTGGTTTTTCCCCTTAAATCAGGAAATACACCTGGA...AAGGACCGTCTCCTGCGTGAGGAGTTGGTTGGAGGTCCCCAAGGCCAGGTACCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000295911.6
3UTR-3UTR TCA 90 bp ATAAGAGTGCAGGGGGTACCTGGCCTTGGGGACCTCCAACCAACTCCTCACGCATGGCGAATAGCGAATTaGCACCAGAGCAAGTTATTT +
Preference number: 2 (lower is better)
Translates to: IRVQGVPGLGDLQPTPHAWRIAN*HQSKLF
Trigger: AAATAACTTGCTCTGGTGTCAATTCGCTATTCGCCA...TGCGTGAGGAGTTGGTTGGAGGTCCCCAAGGCCAGGTACCCCCTGCACTCTTAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000295911.6
3UTR CAA 90 bp GCTGCTGAGTACTCAGCACCTGTGGTCAGAGGCCTAGTGATCTGTTaGCTGTCATTCTCTGCTTTTTCCTTGGTGCTTTCTGGAGGACAG +
Preference number: 2 (lower is better)
Translates to: AAEYSAPVVRGLVIC*LSFSAFSLVLSGGQ
Trigger: CTGTCCTCCAGAAAGCACCAAGGAAAAAGCAGAGAATGACAGCAAACAGATCACTAGGCCTCTGACCACAGGTGCTGAGTACTCAGCAGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000295911.6
ENST00000327047.6
3UTR-3UTR CCA 90 bp GGACAAGATTCCTGTTGTCTCACAGAGCTTATAACCTGGTTGCTGCTGCAGGGCACTAAAGCAGCCAGCTaGTTCCTGCACTCGTTCACT +
Preference number: 2 (lower is better)
Translates to: GQDSCCLTELITWLLLQGTKAAS*FLHSFT
Trigger: AGTGAACGAGTGCAGGAACCAGCTGGCTGCTTTAGT...GCCCTGCAGCAGCAACCAGGTTATAAGCTCTGTGAGACAACAGGAATCTTGTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000645441.1
3UTR CAA 90 bp CAGGAGACGGTCCTTGTCCTCCTAGCCCACTCATTTCCAGTGCTTTaGTACTGGACCATTTCAGCTAAAGACTTACAGAACCGGGCTCTA +
Preference number: 2 (lower is better)
Translates to: QETVLVLLAHSFPVL*YWTISAKDLQNRAL
Trigger: TAGAGCCCGGTTCTGTAAGTCTTTAGCTGAAATGGTCCAGTACAAAAGCACTGGAAATGAGTGGGCTAGGAGGACAAGGACCGTCTCCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000295911.6
3UTR-3UTR TCA 90 bp AACTCCAAGAAGACAGAGAGGAATCCAATAAGAGTGCAGGGGGTACCTGGCCTTAAACTCGGTGTGTTCTaGTGTCTGCTGGCGAATAGC +
Preference number: 2 (lower is better)
Translates to: NSKKTERNPIRVQGVPGLKLGVF*CLLANS
Trigger: GCTATTCGCCAGCAGACATCAGAACACACCGAGTTT...AAGGCCAGGTACCCCCTGCACTCTTATTGGATTCCTCTCTGTCTTCTTGGAGTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000295911.6
3UTR-3UTR CCA 90 bp CTGGTTGCTGCTGCAGGGCCTGCATGGAGTTTACTCCTCACAGCACTAAAGCAGAAATACAGAGGTGTTTaGATCCTGATGGTGTTTACC +
Preference number: 2 (lower is better)
Translates to: LVAAAGPAWSLLLTALKQKYRGV*ILMVFT
Trigger: GGTAAACACCATCAGGATCCAAACACCTCTGTATTT...CTGCTTTAGTGCTGTGAGGAGTAAACTCCATGCAGGCCCTGCAGCAGCAACCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000645441.1
3UTR-3UTR TCA 90 bp TTGTACATGAAGAAGGCTGTCCCCACCATGGTTAACACAATAAGGATGGCAGAGGAGGTGTTTGGATCCTaGTGGTGTTTACCAGTGTCC +
Preference number: 2 (lower is better)
Translates to: LYMKKAVPTMVNTIRMAEEVFGS*WCLPVS
Trigger: GGACACTGGTAAACACCATCAGGATCCAAACACCTC...CTCTGCCATCCTTATTGTGTTAACCATGGTGGGGACAGCCTTCTTCATGTACAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000644099.1
3UTR-3UTR CCA 90 bp GCTGGCAGCCAAAGGGCAACTGAAATGAAGCTCAAAAGGTACAGCCCTAGGGGAAAATACAGAGGTGTTTaGATCCTGATGGTGTTTACC +
Preference number: 2 (lower is better)
Translates to: AGSQRATEMKLKRYSPRGKYRGV*ILMVFT
Trigger: GGTAAACACCATCAGGATCCAAACACCTCTGTATTT...TCCCCTAGGGCTGTACCTTTTGAGCTTCATTTCAGTTGCCCTTTGGCTGCCAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000644099.1
3UTR-3UTR TCA 90 bp AAGGAGTACTTTCAAACCTATTATATGAGGGCTGCTGAGTACTCAGCACCTGTGTTCAAACCTATTATATaGGGGCTGCTGAGTACTCAG +
Preference number: 2 (lower is better)
Translates to: KEYFQTYYMRAAEYSAPVFKPII*GLLSTQ
Trigger: CTGAGTACTCAGCAGCCCTCATATAATAGGTTTGAA...CACAGGTGCTGAGTACTCAGCAGCCCTCATATAATAGGTTTGAAAGTACTCCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000295911.6
ENST00000327047.6
3UTR-3UTR TCA 90 bp AAGGAGTACTTTCAAACCTATTATATGAGGGCTGCTGAGTACTCAGCACCTGTGTGTCACGAAGGGTCCTaGTGCTTTAATATATGCAGA +
Preference number: 2 (lower is better)
Translates to: KEYFQTYYMRAAEYSAPVCHEGS*CFNICR
Trigger: TCTGCATATATTAAAGCATCAGGACCCTTCGTGACA...CACAGGTGCTGAGTACTCAGCAGCCCTCATATAATAGGTTTGAAAGTACTCCTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000327047.6
3UTR-3UTR TCA 90 bp AAGGAGTACTTTCAAACCTATTATATGAGGGCTGCTGAGTACTCAGCACCTGTGTGTAACTCGAACTCCTaGACTCAAATGATCTTCCCA +
Preference number: 2 (lower is better)
Translates to: KEYFQTYYMRAAEYSAPVCNSNS*TQMIFP
Trigger: TGGGAAGATCATTTGAGTTCAGGAGTTCGAGTTACA...CACAGGTGCTGAGTACTCAGCAGCCCTCATATAATAGGTTTGAAAGTACTCCTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000327047.6
3UTR-3UTR TCA 90 bp TTTCATGATTCCTCAGTGGTCCTAACAATTATGTTCATTGAAAGTACTGTCGTGTTATATGAGGGCTGCTaGGTACTCAGCACCTGTGGT +
Preference number: 2 (lower is better)
Translates to: FHDSSVVLTIMFIESTVVLYEGC*VLSTCG
Trigger: ACCACAGGTGCTGAGTACTCAGCAGCCCTCATATAA...CACGACAGTACTTTCAATGAACATAATTGTTAGGACCACTGAGGAATCATGAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000327047.6
3UTR-3UTR TCA 90 bp AAGGAGTACTTTCAAACCTATTATATGAGGGCTGCTGAGTACTCAGCACCTGTGAGAGATCATTTTTCATaGTTCCTCAGTGGTCCTAAC +
Preference number: 2 (lower is better)
Translates to: KEYFQTYYMRAAEYSAPVRDHFS*FLSGPN
Trigger: GTTAGGACCACTGAGGAATCATGAAAAATGATCTCT...CACAGGTGCTGAGTACTCAGCAGCCCTCATATAATAGGTTTGAAAGTACTCCTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000327047.6
3UTR-3UTR TCA 90 bp GGTGTTCGAAGGAGTTTTTCAAAACTCCAAGAAGACAGAGAGGAATCCAATAAGTTCAAACCTATTATATaGGGGCTGCTGAGTACTCAG +
Preference number: 2 (lower is better)
Translates to: GVRRSFSKLQEDREESNKFKPII*GLLSTQ
Trigger: CTGAGTACTCAGCAGCCCTCATATAATAGGTTTGAA...CTTATTGGATTCCTCTCTGTCTTCTTGGAGTTTTGAAAAACTCCTTCGAACACC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000295911.6
3UTR-3UTR TCA 90 bp AGAATGAGGTGGTATATTTTTCACTTTGCGTTTTGTAGACATAAGTCCCTTCTTCACAGGAGCCTGAAATaGAGCTCAAAAGGTACAGCC +
Preference number: 2 (lower is better)
Translates to: RMRWYIFHFAFCRHKSLLHRSLK*SSKGTA
Trigger: GGCTGTACCTTTTGAGCTTCATTTCAGGCTCCTGTG...AAGAAGGGACTTATGTCTACAAAACGCAAAGTGAAAAATATACCACCTCATTCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000468836.2
3UTR-3UTR TCA 90 bp TTTCATGATTCCTCAGTGGTCCTAACAATTATGTTCATTGAAAGTACTGTCGTGTGCAGCTCAGTTTTCTaGAATCTGGCAACAAATGTG +
Preference number: 2 (lower is better)
Translates to: FHDSSVVLTIMFIESTVVCSSVF*NLATNV
Trigger: CACATTTGTTGCCAGATTTCAGAAAACTGAGCTGCA...CACGACAGTACTTTCAATGAACATAATTGTTAGGACCACTGAGGAATCATGAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000327047.6
3UTR-3UTR TCA 90 bp TTTCATGATTCCTCAGTGGTCCTAACAATTATGTTCATTGAAAGTACTGTCGTGAGAGTTTGCAGATTTTaGCCAACAGACATGGTTAAT +
Preference number: 2 (lower is better)
Translates to: FHDSSVVLTIMFIESTVVRVCRF*PTDMVN
Trigger: ATTAACCATGTCTGTTGGTCAAAATCTGCAAACTCT...CACGACAGTACTTTCAATGAACATAATTGTTAGGACCACTGAGGAATCATGAAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000327047.6
3UTR CCA 72 bp GACAGAGAGGAATCCAATAAGAGTGCAGGGGGTACCTaGCCTTGGGGACCTCCAACCAACTCCTCACGCAGG +
Preference number: 3 (lower is better)
Translates to: DREESNKSAGGT*PWGPPTNSSRR
Trigger: CCTGCGTGAGGAGTTGGTTGGAGGTCCCCAAGGCCAGGTACCCCCTGCACTCTTATTGGATTCCTCTCTGTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000295911.6
3UTR-3UTR CAA 90 bp AGTGCAGGGGGTACCTGGCCTTGGGGACCTCCAACCAACTCCTCACGCAGGAGACTGGCGAATAGCGAATaGACACCAGAGCAAGTTATT +
Preference number: 3 (lower is better)
Translates to: SAGGTWPWGPPTNSSRRRLANSE*TPEQVI
Trigger: AATAACTTGCTCTGGTGTCAATTCGCTATTCGCCAG...TCTCCTGCGTGAGGAGTTGGTTGGAGGTCCCCAAGGCCAGGTACCCCCTGCACT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000295911.6
3UTR GCA 72 bp TTACTCCTCACAGCACTAAAGCAGCCAGCTGGTTCCTaGACTCGTTCACTCGTGTGCTCCCTCCTGCAAGAG +
Preference number: 3 (lower is better)
Translates to: LLLTALKQPAGS*TRSLVCSLLQE
Trigger: CTCTTGCAGGAGGGAGCACACGAGTGAACGAGTGCAGGAACCAGCTGGCTGCTTTAGTGCTGTGAGGAGTAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000645441.1
3UTR CCA 72 bp ATGGAGTTTACTCCTCACAGCACTAAAGCAGCCAGCTaGTTCCTGCACTCGTTCACTCGTGTGCTCCCTCCT +
Preference number: 3 (lower is better)
Translates to: MEFTPHSTKAAS*FLHSFTRVLPP
Trigger: AGGAGGGAGCACACGAGTGAACGAGTGCAGGAACCAGCTGGCTGCTTTAGTGCTGTGAGGAGTAAACTCCAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000645441.1
3UTR CCA 72 bp AGAGCTTATAACCTGGTTGCTGCTGCAGGGCCTGCATaGAGTTTACTCCTCACAGCACTAAAGCAGCCAGCT +
Preference number: 3 (lower is better)
Translates to: RAYNLVAAAGPA*SLLLTALKQPA
Trigger: AGCTGGCTGCTTTAGTGCTGTGAGGAGTAAACTCCATGCAGGCCCTGCAGCAGCAACCAGGTTATAAGCTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000645441.1
3UTR CCA 72 bp GGACAAGATTCCTGTTGTCTCACAGAGCTTATAACCTaGTTGCTGCTGCAGGGCCTGCATGGAGTTTACTCC +
Preference number: 3 (lower is better)
Translates to: GQDSCCLTELIT*LLLQGLHGVYS
Trigger: GGAGTAAACTCCATGCAGGCCCTGCAGCAGCAACCAGGTTATAAGCTCTGTGAGACAACAGGAATCTTGTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000645441.1
3UTR TCA 72 bp AGGGGAAAAACCAGCATCTGGAAACTCGGTGTGTTCTaGTGTCTGCTGGCGAATAGCGAATTGACACCAGAG +
Preference number: 3 (lower is better)
Translates to: RGKTSIWKLGVF*CLLANSELTPE
Trigger: CTCTGGTGTCAATTCGCTATTCGCCAGCAGACATCAGAACACACCGAGTTTCCAGATGCTGGTTTTTCCCCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000295911.6
3UTR CCA 72 bp GTCCTCCTAGCCCACTCATTTCCAGTGCTTTTGTACTaGACCATTTCAGCTAAAGACTTACAGAACCGGGCT +
Preference number: 3 (lower is better)
Translates to: VLLAHSFPVLLY*TISAKDLQNRA
Trigger: AGCCCGGTTCTGTAAGTCTTTAGCTGAAATGGTCCAGTACAAAAGCACTGGAAATGAGTGGGCTAGGAGGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000295911.6
3UTR-3UTR CAA 90 bp AACTCCAAGAAGACAGAGAGGAATCCAATAAGAGTGCAGGGGGTACCTGGCCTTTCATTTCCAGTGCTTTaGTACTGGACCATTTCAGCT +
Preference number: 3 (lower is better)
Translates to: NSKKTERNPIRVQGVPGLSFPVL*YWTISA
Trigger: AGCTGAAATGGTCCAGTACAAAAGCACTGGAAATGA...AAGGCCAGGTACCCCCTGCACTCTTATTGGATTCCTCTCTGTCTTCTTGGAGTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000295911.6
3UTR TCA 72 bp TCGGTGTGTTCTGATGTCTGCTGGCGAATAGCGAATTaGCACCAGAGCAAGTTATTTCTCAGGTATACGGTT +
Preference number: 3 (lower is better)
Translates to: SVCSDVCWRIAN*HQSKLFLRYTV
Trigger: AACCGTATACCTGAGAAATAACTTGCTCTGGTGTCAATTCGCTATTCGCCAGCAGACATCAGAACACACCGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000295911.6
ENST00000327047.6
3UTR CCA 72 bp AATAGGGAGCATCCTCTTCGTAAATACAGAGGTGTTTaGATCCTGATGGTGTTTACCAGTGTCCTCACTCAG +
Preference number: 3 (lower is better)
Translates to: NREHPLRKYRGV*ILMVFTSVLTQ
Trigger: CTGAGTGAGGACACTGGTAAACACCATCAGGATCCAAACACCTCTGTATTTACGAAGAGGATGCTCCCTATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000644099.1
ENST00000645441.1
3UTR TCA 72 bp TGGAGTAACAATTTGTCGATTCTAGTCAACTGCCTTTaGCTACCTGGGTCAAGCAATTTCCCACCAGATAAA +
Preference number: 3 (lower is better)
Translates to: WSNNLSILVNCL*LPGSSNFPPDK
Trigger: TTTATCTGGTGGGAAATTGCTTGACCCAGGTAGTCAAAGGCAGTTGACTAGAATCGACAAATTGTTACTCCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000327047.6
3UTR-3UTR CAA 90 bp AAGGAGTACTTTCAAACCTATTATATGAGGGCTGCTGAGTACTCAGCACCTGTGATATGGAGTAACAATTaGTCGATTCTAGTCAACTGC +
Preference number: 3 (lower is better)
Translates to: KEYFQTYYMRAAEYSAPVIWSNN*SILVNC
Trigger: GCAGTTGACTAGAATCGACAAATTGTTACTCCATAT...CACAGGTGCTGAGTACTCAGCAGCCCTCATATAATAGGTTTGAAAGTACTCCTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000327047.6
3UTR CCA 72 bp CACACACACACACACACACACACACATATATATATATaGAGTAACAATTTGTCGATTCTAGTCAACTGCCTT +
Preference number: 3 (lower is better)
Translates to: HTHTHTHTHIYI*SNNLSILVNCL
Trigger: AAGGCAGTTGACTAGAATCGACAAATTGTTACTCCATATATATATATGTGTGTGTGTGTGTGTGTGTGTGTG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000327047.6
CDS-3UTR TCA 90 bp CCAATAAGAGTGCAGGGGGTACCTGGCCTTGGGGACCTCCAACCAACTCCTCACTTGAGCAGGGCAGGCTaGGTAAATGGGGTACCCCTG +
Preference number: 4 (lower is better)
Translates to: PIRVQGVPGLGDLQPTPHLSRAG*VNGVPL
Trigger: CAGGGGTACCCCATTTACTCAGCCTGCCCTGCTCAA...GTGAGGAGTTGGTTGGAGGTCCCCAAGGCCAGGTACCCCCTGCACTCTTATTGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENST00000295911.6
CDS-3UTR TCA 90 bp GGGGTACCTGGCCTTGGGGACCTCCAACCAACTCCTCACGCAGGAGACGGTCCTCACAGGAGCCTGAAATaGAGCTCAAAAGGTACAGCC +
Preference number: 4 (lower is better)
Translates to: GVPGLGDLQPTPHAGDGPHRSLK*SSKGTA
Trigger: GGCTGTACCTTTTGAGCTTCATTTCAGGCTCCTGTG...AGGACCGTCTCCTGCGTGAGGAGTTGGTTGGAGGTCCCCAAGGCCAGGTACCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000295911.6
CDS-3UTR GCA 90 bp CCAATAAGAGTGCAGGGGGTACCTGGCCTTGGGGACCTCCAACCAACTCCTCACTCGTGTGCTCCCTCCTaGAAGAGGTTGAGCAGGGCA +
Preference number: 4 (lower is better)
Translates to: PIRVQGVPGLGDLQPTPHSCAPS*KRLSRA
Trigger: TGCCCTGCTCAACCTCTTGCAGGAGGGAGCACACGA...GTGAGGAGTTGGTTGGAGGTCCCCAAGGCCAGGTACCCCCTGCACTCTTATTGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000295911.6
CDS-3UTR TCA 90 bp CCACAGGAGCCTGAAATGAAGCTCAAAAGGTACAGCCCTAGGGGACCATGCAGAGTCCAGCTCCTGCCCTaGGGCATTGACGAGCAGAGC +
Preference number: 4 (lower is better)
Translates to: PQEPEMKLKRYSPRGPCRVQLLP*GIDEQS
Trigger: GCTCTGCTCGTCAATGCCTCAGGGCAGGAGCTGGAC...TCTGCATGGTCCCCTAGGGCTGTACCTTTTGAGCTTCATTTCAGGCTCCTGTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000468836.2
CDS-3UTR GCA 90 bp GGGTACCTGGCCTTGGGGACCTCCAACCAACTCCTCACGCAGGAGACGGTCCTTCTGCTTTTTCCTTGGTaGTTTCTGGAGGACAGCAGG +
Preference number: 4 (lower is better)
Translates to: GYLALGTSNQLLTQETVLLLFPW*FLEDSR
Trigger: CCTGCTGTCCTCCAGAAAGCACCAAGGAAAAAGCAG...AAGGACCGTCTCCTGCGTGAGGAGTTGGTTGGAGGTCCCCAAGGCCAGGTACCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000295911.6
CDS-3UTR GCA 90 bp CCACAGGAGCCTGAAATGAAGCTCAAAAGGTACAGCCCTAGGGGACCATGCAGAGCTCCCAACCCACACTaGCTCACACCCTCTCCGTGG +
Preference number: 4 (lower is better)
Translates to: PQEPEMKLKRYSPRGPCRAPNPH*LTPSPW
Trigger: CCACGGAGAGGGTGTGAGGCAGTGTGGGTTGGGAGC...TCTGCATGGTCCCCTAGGGCTGTACCTTTTGAGCTTCATTTCAGGCTCCTGTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000468836.2
CDS-3UTR TCA 90 bp AGGGGGTACCTGGCCTTGGGGACCTCCAACCAACTCCTCACGCAGGAGACGGTCAGGGTAATGGGATTTTaGGTGATCTCTGAGTGGATG +
Preference number: 4 (lower is better)
Translates to: RGYLALGTSNQLLTQETVRVMGF*VISEWM
Trigger: CATCCACTCAGAGATCACTCAAAATCCCATTACCCT...GACCGTCTCCTGCGTGAGGAGTTGGTTGGAGGTCCCCAAGGCCAGGTACCCCCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000295911.6
CDS-3UTR TCA 90 bp TACCTGGCCTTGGGGACCTCCAACCAACTCCTCACGCAGGAGACGGTCCTTGTCCTGTTGGGAGTCCCATaGAGGGGTCAAGAAAATAGC +
Preference number: 4 (lower is better)
Translates to: YLALGTSNQLLTQETVLVLLGVP*RGQENS
Trigger: GCTATTTTCTTGACCCCTTCATGGGACTCCCAACAG...GACAAGGACCGTCTCCTGCGTGAGGAGTTGGTTGGAGGTCCCCAAGGCCAGGTA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000295911.6
CDS-3UTR TCA 90 bp CCACAGGAGCCTGAAATGAAGCTCAAAAGGTACAGCCCTAGGGGACCATGCAGACCTGCCCTGAGGCATTaGCGAGCAGAGCTCCCGTTT +
Preference number: 4 (lower is better)
Translates to: PQEPEMKLKRYSPRGPCRPALRH*RAELPF
Trigger: AAACGGGAGCTCTGCTCGTCAATGCCTCAGGGCAGG...TCTGCATGGTCCCCTAGGGCTGTACCTTTTGAGCTTCATTTCAGGCTCCTGTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000468836.2
CDS-3UTR GCA 90 bp AGTTTACTCCTCACAGCACTAAAGCAGCCAGCTGGTTCCTGCACTCGTTCACTCGCTCCCAACCCACACTaGCTCACACCCTCTCCGTGG +
Preference number: 4 (lower is better)
Translates to: SLLLTALKQPAGSCTRSLAPNPH*LTPSPW
Trigger: CCACGGAGAGGGTGTGAGGCAGTGTGGGTTGGGAGC...GAGTGAACGAGTGCAGGAACCAGCTGGCTGCTTTAGTGCTGTGAGGAGTAAACT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000645441.1
CDS-3UTR TCA 90 bp AGGGGGTACCTGGCCTTGGGGACCTCCAACCAACTCCTCACGCAGGAGACGGTCCTGACACCTGAATGTTaGGAAGGAAATCACCCTTTA +
Preference number: 4 (lower is better)
Translates to: RGYLALGTSNQLLTQETVLTPEC*EGNHPL
Trigger: TAAAGGGTGATTTCCTTCTCAACATTCAGGTGTCAG...GACCGTCTCCTGCGTGAGGAGTTGGTTGGAGGTCCCCAAGGCCAGGTACCCCCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000295911.6
CDS-3UTR TCA 90 bp AGGGGGTACCTGGCCTTGGGGACCTCCAACCAACTCCTCACGCAGGAGACGGTCTCACTGGGATTGCTTTaGGCAAATCTGGAAAAACTG +
Preference number: 4 (lower is better)
Translates to: RGYLALGTSNQLLTQETVSLGLL*ANLEKL
Trigger: CAGTTTTTCCAGATTTGCTCAAAGCAATCCCAGTGA...GACCGTCTCCTGCGTGAGGAGTTGGTTGGAGGTCCCCAAGGCCAGGTACCCCCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000295911.6
CDS-3UTR TCA 90 bp CCAATAAGAGTGCAGGGGGTACCTGGCCTTGGGGACCTCCAACCAACTCCTCACTTATATGAGGGCTGCTaGGTACTCAGCACCTGTGGT +
Preference number: 4 (lower is better)
Translates to: PIRVQGVPGLGDLQPTPHLYEGC*VLSTCG
Trigger: ACCACAGGTGCTGAGTACTCAGCAGCCCTCATATAA...GTGAGGAGTTGGTTGGAGGTCCCCAAGGCCAGGTACCCCCTGCACTCTTATTGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000295911.6
CDS-3UTR CCA 90 bp GGGTACCTGGCCTTGGGGACCTCCAACCAACTCCTCACGCAGGAGACGGTCCTTAGAATGACATTGACGTaGATGCTCACTGGGATTGCT +
Preference number: 4 (lower is better)
Translates to: GYLALGTSNQLLTQETVLRMTLT*MLTGIA
Trigger: AGCAATCCCAGTGAGCATCCACGTCAATGTCATTCT...AAGGACCGTCTCCTGCGTGAGGAGTTGGTTGGAGGTCCCCAAGGCCAGGTACCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000295911.6
CDS-3UTR CCA 90 bp TCTGCTTTTTCCTTGGTGCTTTCTGGAGGACAGCAGGTTGAGGATGAAGGAAGGAGTGCAGGGGGTACCTaGCCTTGGGGACCTCCAACC +
Preference number: 4 (lower is better)
Translates to: SAFSLVLSGGQQVEDEGRSAGGT*PWGPPT
Trigger: GGTTGGAGGTCCCCAAGGCCAGGTACCCCCTGCACT...CCTTCCTTCATCCTCAACCTGCTGTCCTCCAGAAAGCACCAAGGAAAAAGCAGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000295911.6
CDS-3UTR TCA 90 bp GGGCCTGCATGGAGTTTACTCCTCACAGCACTAAAGCAGCCAGCTGGTTCCTGCCTGTTGGGAGTCCCATaGAGGGGTCAAGAAAATAGC +
Preference number: 4 (lower is better)
Translates to: GPAWSLLLTALKQPAGSCLLGVP*RGQENS
Trigger: GCTATTTTCTTGACCCCTTCATGGGACTCCCAACAG...GCAGGAACCAGCTGGCTGCTTTAGTGCTGTGAGGAGTAAACTCCATGCAGGCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000645441.1
CDS-3UTR TCA 90 bp AGAGAGGAATCCAATAAGAGTGCAGGGGGTACCTGGCCTTGGGGACCTCCAACCAAACTCGGTGTGTTCTaGTGTCTGCTGGCGAATAGC +
Preference number: 4 (lower is better)
Translates to: REESNKSAGGTWPWGPPTKLGVF*CLLANS
Trigger: GCTATTCGCCAGCAGACATCAGAACACACCGAGTTT...GGTTGGAGGTCCCCAAGGCCAGGTACCCCCTGCACTCTTATTGGATTCCTCTCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000295911.6
CDS-3UTR GCA 90 bp CCACAGGAGCCTGAAATGAAGCTCAAAAGGTACAGCCCTAGGGGACCATGCAGATGCTGCTGCAGGGCCTaGATGGAGTTTACTCCTCAC +
Preference number: 4 (lower is better)
Translates to: PQEPEMKLKRYSPRGPCRCCCRA*MEFTPH
Trigger: GTGAGGAGTAAACTCCATGCAGGCCCTGCAGCAGCA...TCTGCATGGTCCCCTAGGGCTGTACCTTTTGAGCTTCATTTCAGGCTCCTGTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000468836.2
CDS-3UTR GCA 90 bp TTTCAAACCTATTATATGAGGGCTGCTGAGTACTCAGCACCTGTGGTCAGAGGCGCTCCCAACCCACACTaGCTCACACCCTCTCCGTGG +
Preference number: 4 (lower is better)
Translates to: FQTYYMRAAEYSAPVVRGAPNPH*LTPSPW
Trigger: CCACGGAGAGGGTGTGAGGCAGTGTGGGTTGGGAGC...GCCTCTGACCACAGGTGCTGAGTACTCAGCAGCCCTCATATAATAGGTTTGAAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000327047.6
CDS-3UTR CCA 90 bp AAGAAGACAGAGAGGAATCCAATAAGAGTGCAGGGGGTACCTGGCCTTGGGGACAATGAGCCAGTGCAGTaGAGCCTGGTGAATGGTGGG +
Preference number: 4 (lower is better)
Translates to: KKTERNPIRVQGVPGLGDNEPVQ*SLVNGG
Trigger: CCCACCATTCACCAGGCTCCACTGCACTGGCTCATT...GTCCCCAAGGCCAGGTACCCCCTGCACTCTTATTGGATTCCTCTCTGTCTTCTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000295911.6
CDS-3UTR TCA 90 bp TCTGCTTTTTCCTTGGTGCTTTCTGGAGGACAGCAGGTTGAGGATGAAGGAAGGCAACTGAGGCAGGAATaGGCCAGTGCAGTGGAGCCT +
Preference number: 4 (lower is better)
Translates to: SAFSLVLSGGQQVEDEGRQLRQE*ASAVEP
Trigger: AGGCTCCACTGCACTGGCTCATTCCTGCCTCAGTTG...CCTTCCTTCATCCTCAACCTGCTGTCCTCCAGAAAGCACCAAGGAAAAAGCAGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000295911.6
CDS-3UTR TCA 90 bp TTTCAAACCTATTATATGAGGGCTGCTGAGTACTCAGCACCTGTGGTCAGAGGCCCTGCCCTGAGGCATTaGCGAGCAGAGCTCCCGTTT +
Preference number: 4 (lower is better)
Translates to: FQTYYMRAAEYSAPVVRGPALRH*RAELPF
Trigger: AAACGGGAGCTCTGCTCGTCAATGCCTCAGGGCAGG...GCCTCTGACCACAGGTGCTGAGTACTCAGCAGCCCTCATATAATAGGTTTGAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000327047.6
CDS-3UTR TCA 90 bp CCTGGTTGCTGCTGCAGGGCCTGCATGGAGTTTACTCCTCACAGCACTAAAGCAGAGGTGTTTGGATCCTaGTGGTGTTTACCAGTGTCC +
Preference number: 4 (lower is better)
Translates to: PGCCCRACMEFTPHSTKAEVFGS*WCLPVS
Trigger: GGACACTGGTAAACACCATCAGGATCCAAACACCTC...TGCTTTAGTGCTGTGAGGAGTAAACTCCATGCAGGCCCTGCAGCAGCAACCAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000645441.1
CDS-3UTR GCA 90 bp TGTCTCACAGAGCTTATAACCTGGTTGCTGCTGCAGGGCCTGCATGGAGTTTACTGCTGCTGCAGGGCCTaGATGGAGTTTACTCCTCAC +
Preference number: 4 (lower is better)
Translates to: CLTELITWLLLQGLHGVYCCCRA*MEFTPH
Trigger: GTGAGGAGTAAACTCCATGCAGGCCCTGCAGCAGCA...GTAAACTCCATGCAGGCCCTGCAGCAGCAACCAGGTTATAAGCTCTGTGAGACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000645441.1
CDS-3UTR GCA 90 bp CCACAGGAGCCTGAAATGAAGCTCAAAAGGTACAGCCCTAGGGGACCATGCAGATCTGGAAAAACTGGTTaGTGCTGCAGGGCCTGCATG +
Preference number: 4 (lower is better)
Translates to: PQEPEMKLKRYSPRGPCRSGKTG*CCRACM
Trigger: CATGCAGGCCCTGCAGCAGCAACCAGTTTTTCCAGA...TCTGCATGGTCCCCTAGGGCTGTACCTTTTGAGCTTCATTTCAGGCTCCTGTGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000468836.2
CDS-3UTR GCA 90 bp TTGTACATGAAGAAGGCTGTCCCCACCATGGTTAACACAATAAGGATGGCAGAGGCTCCCAACCCACACTaGCTCACACCCTCTCCGTGG +
Preference number: 4 (lower is better)
Translates to: LYMKKAVPTMVNTIRMAEAPNPH*LTPSPW
Trigger: CCACGGAGAGGGTGTGAGGCAGTGTGGGTTGGGAGC...CTCTGCCATCCTTATTGTGTTAACCATGGTGGGGACAGCCTTCTTCATGTACAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000644099.1
CDS-3UTR CCA 90 bp AGTGCAGGGGGTACCTGGCCTTGGGGACCTCCAACCAACTCCTCACGCAGGAGATCAGCCAGAATGAGGTaGTATATTTTTCACTTTGCG +
Preference number: 4 (lower is better)
Translates to: SAGGTWPWGPPTNSSRRRSARMR*YIFHFA
Trigger: CGCAAAGTGAAAAATATACCACCTCATTCTGGCTGA...TCTCCTGCGTGAGGAGTTGGTTGGAGGTCCCCAAGGCCAGGTACCCCCTGCACT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000295911.6
CDS-3UTR CCA 90 bp TTCCAGTGCTTTTGTACTGGACCATTTCAGCTAAAGACTTACAGAACCGGGCTCGGGGGTACCTGGCCTTaGGGACCTCCAACCAACTCC +
Preference number: 4 (lower is better)
Translates to: FQCFCTGPFQLKTYRTGLGGTWP*GPPTNS
Trigger: GGAGTTGGTTGGAGGTCCCCAAGGCCAGGTACCCCC...GAGCCCGGTTCTGTAAGTCTTTAGCTGAAATGGTCCAGTACAAAAGCACTGGAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000295911.6
CDS-3UTR CCA 90 bp GCTGGCAGCCAAAGGGCAACTGAAATGAAGCTCAAAAGGTACAGCCCTAGGGGACTCACACCCTCTCCGTaGAAAAGCCCGTACTGCATT +
Preference number: 4 (lower is better)
Translates to: AGSQRATEMKLKRYSPRGLTPSP*KSPYCI
Trigger: AATGCAGTACGGGCTTTTCCACGGAGAGGGTGTGAG...TCCCCTAGGGCTGTACCTTTTGAGCTTCATTTCAGTTGCCCTTTGGCTGCCAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000644099.1
CDS-3UTR CCA 90 bp CCTGGTTGCTGCTGCAGGGCCTGCATGGAGTTTACTCCTCACAGCACTAAAGCACTCACTCAGGAGTCATaGCCAGGTCATTTGACTGCT +
Preference number: 4 (lower is better)
Translates to: PGCCCRACMEFTPHSTKALTQES*PGHLTA
Trigger: AGCAGTCAAATGACCTGGCCATGACTCCTGAGTGAG...TGCTTTAGTGCTGTGAGGAGTAAACTCCATGCAGGCCCTGCAGCAGCAACCAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000645441.1
CDS-3UTR TCA 90 bp CCACAGGAGCCTGAAATGAAGCTCAAAAGGTACAGCCCTAGGGGACCATGCAGACTGTTGGGAGTCCCATaGAGGGGTCAAGAAAATAGC +
Preference number: 4 (lower is better)
Translates to: PQEPEMKLKRYSPRGPCRLLGVP*RGQENS
Trigger: GCTATTTTCTTGACCCCTTCATGGGACTCCCAACAG...TCTGCATGGTCCCCTAGGGCTGTACCTTTTGAGCTTCATTTCAGGCTCCTGTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENST00000468836.2
CDS-3UTR TCA 90 bp TTGGTGCTTTCTGGAGGACAGCAGGTTGAGGATGAAGGAAGGGTCAGTTCCAGGTTATATGAGGGCTGCTaGGTACTCAGCACCTGTGGT +
Preference number: 4 (lower is better)
Translates to: LVLSGGQQVEDEGRVSSRLYEGC*VLSTCG
Trigger: ACCACAGGTGCTGAGTACTCAGCAGCCCTCATATAA...CCTGGAACTGACCCTTCCTTCATCCTCAACCTGCTGTCCTCCAGAAAGCACCAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000295911.6
ENST00000327047.6
CDS-3UTR CCA 90 bp CCACAGGAGCCTGAAATGAAGCTCAAAAGGTACAGCCCTAGGGGACCATGCAGAACTAAAGCAGCCAGCTaGTTCCTGCACTCGTTCACT +
Preference number: 4 (lower is better)
Translates to: PQEPEMKLKRYSPRGPCRTKAAS*FLHSFT
Trigger: AGTGAACGAGTGCAGGAACCAGCTGGCTGCTTTAGT...TCTGCATGGTCCCCTAGGGCTGTACCTTTTGAGCTTCATTTCAGGCTCCTGTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000468836.2
CDS-3UTR CCA 90 bp GGACAAGATTCCTGTTGTCTCACAGAGCTTATAACCTGGTTGCTGCTGCAGGGCCTCACACCCTCTCCGTaGAAAAGCCCGTACTGCATT +
Preference number: 4 (lower is better)
Translates to: GQDSCCLTELITWLLLQGLTPSP*KSPYCI
Trigger: AATGCAGTACGGGCTTTTCCACGGAGAGGGTGTGAG...GCCCTGCAGCAGCAACCAGGTTATAAGCTCTGTGAGACAACAGGAATCTTGTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000645441.1
CDS-3UTR CCA 90 bp GCTGGCAGCCAAAGGGCAACTGAAATGAAGCTCAAAAGGTACAGCCCTAGGGGACTCACTCAGGAGTCATaGCCAGGTCATTTGACTGCT +
Preference number: 4 (lower is better)
Translates to: AGSQRATEMKLKRYSPRGLTQES*PGHLTA
Trigger: AGCAGTCAAATGACCTGGCCATGACTCCTGAGTGAG...TCCCCTAGGGCTGTACCTTTTGAGCTTCATTTCAGTTGCCCTTTGGCTGCCAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000644099.1
CDS-3UTR TCA 90 bp TTTCAAACCTATTATATGAGGGCTGCTGAGTACTCAGCACCTGTGGTCAGAGGCAGAGGACAGTGGCTTTaGTCCACAACGGTGTCCCCA +
Preference number: 4 (lower is better)
Translates to: FQTYYMRAAEYSAPVVRGRGQWL*STTVSP
Trigger: TGGGGACACCGTTGTGGATCAAAGCCACTGTCCTCT...GCCTCTGACCACAGGTGCTGAGTACTCAGCAGCCCTCATATAATAGGTTTGAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000327047.6
CDS-3UTR GCA 90 bp GTGATCTGTTTGCTGTCATTCTCTGCTTTTTCCTTGGTGCTTTCTGGAGGACAGCAGCCAGCTGGTTCCTaGACTCGTTCACTCGTGTGC +
Preference number: 4 (lower is better)
Translates to: VICLLSFSAFSLVLSGGQQPAGS*TRSLVC
Trigger: GCACACGAGTGAACGAGTGCAGGAACCAGCTGGCTG...CTGTCCTCCAGAAAGCACCAAGGAAAAAGCAGAGAATGACAGCAAACAGATCAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000295911.6
CDS-3UTR GCA 90 bp AACTCCAAGAAGACAGAGAGGAATCCAATAAGAGTGCAGGGGGTACCTGGCCTTTCTGGAAAAACTGGTTaGTGCTGCAGGGCCTGCATG +
Preference number: 4 (lower is better)
Translates to: NSKKTERNPIRVQGVPGLSGKTG*CCRACM
Trigger: CATGCAGGCCCTGCAGCAGCAACCAGTTTTTCCAGA...AAGGCCAGGTACCCCCTGCACTCTTATTGGATTCCTCTCTGTCTTCTTGGAGTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000295911.6
CDS-3UTR GCA 90 bp TCTGCTTTTTCCTTGGTGCTTTCTGGAGGACAGCAGGTTGAGGATGAAGGAAGGAACTCCGAGGGCACATaGAAAACTGAACACTCCGGC +
Preference number: 4 (lower is better)
Translates to: SAFSLVLSGGQQVEDEGRNSEGT*KTEHSG
Trigger: GCCGGAGTGTTCAGTTTTGCATGTGCCCTCGGAGTT...CCTTCCTTCATCCTCAACCTGCTGTCCTCCAGAAAGCACCAAGGAAAAAGCAGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000327047.6
CDS-3UTR CCA 90 bp AGTTTACTCCTCACAGCACTAAAGCAGCCAGCTGGTTCCTGCACTCGTTCACTCACTAAAGCAGCCAGCTaGTTCCTGCACTCGTTCACT +
Preference number: 4 (lower is better)
Translates to: SLLLTALKQPAGSCTRSLTKAAS*FLHSFT
Trigger: AGTGAACGAGTGCAGGAACCAGCTGGCTGCTTTAGT...GAGTGAACGAGTGCAGGAACCAGCTGGCTGCTTTAGTGCTGTGAGGAGTAAACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000645441.1
CDS-3UTR TCA 90 bp CTATCCAATAGGGAGCATCCTCTTCGTAAATACAGAGGTGTTTGGATCCTGATGTTGAGCAGGGCAGGCTaGGTAAATGGGGTACCCCTG +
Preference number: 4 (lower is better)
Translates to: LSNREHPLRKYRGVWILMLSRAG*VNGVPL
Trigger: CAGGGGTACCCCATTTACTCAGCCTGCCCTGCTCAA...CATCAGGATCCAAACACCTCTGTATTTACGAAGAGGATGCTCCCTATTGGATAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000645441.1
CDS-3UTR TCA 90 bp TTTCAAACCTATTATATGAGGGCTGCTGAGTACTCAGCACCTGTGGTCAGAGGCCTGGGTCATGCTTGGTaGCAGCCAGAACAAGACCAA +
Preference number: 4 (lower is better)
Translates to: FQTYYMRAAEYSAPVVRGLGHAW*QPEQDQ
Trigger: TTGGTCTTGTTCTGGCTGTCACCAAGCATGACCCAG...GCCTCTGACCACAGGTGCTGAGTACTCAGCAGCCCTCATATAATAGGTTTGAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000327047.6
CDS-3UTR CCA 90 bp TCTGCTTTTTCCTTGGTGCTTTCTGGAGGACAGCAGGTTGAGGATGAAGGAAGGACTAAAGCAGCCAGCTaGTTCCTGCACTCGTTCACT +
Preference number: 4 (lower is better)
Translates to: SAFSLVLSGGQQVEDEGRTKAAS*FLHSFT
Trigger: AGTGAACGAGTGCAGGAACCAGCTGGCTGCTTTAGT...CCTTCCTTCATCCTCAACCTGCTGTCCTCCAGAAAGCACCAAGGAAAAAGCAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000295911.6
CDS-3UTR CCA 90 bp TTTCAAACCTATTATATGAGGGCTGCTGAGTACTCAGCACCTGTGGTCAGAGGCTTCCAGGCTCAGCTGTaGCCTTTAGTCAGCTGCAGA +
Preference number: 4 (lower is better)
Translates to: FQTYYMRAAEYSAPVVRGFQAQL*PLVSCR
Trigger: TCTGCAGCTGACTAAAGGCCACAGCTGAGCCTGGAA...GCCTCTGACCACAGGTGCTGAGTACTCAGCAGCCCTCATATAATAGGTTTGAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000327047.6
3UTR CAA 72 bp CAAGATTCCTGTTGTCTCACAGAGCTTATAACCTGGTaGCTGCTGCAGGGCCTGCATGGAGTTTACTCCTCA +
Preference number: 4 (lower is better)
Translates to: QDSCCLTELITW*LLQGLHGVYSS
Trigger: TGAGGAGTAAACTCCATGCAGGCCCTGCAGCAGCAACCAGGTTATAAGCTCTGTGAGACAACAGGAATCTTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000645441.1
CDS-3UTR TCA 90 bp TTTCAAACCTATTATATGAGGGCTGCTGAGTACTCAGCACCTGTGGTCAGAGGCCACAGGAGCCTGAAATaGAGCTCAAAAGGTACAGCC +
Preference number: 4 (lower is better)
Translates to: FQTYYMRAAEYSAPVVRGHRSLK*SSKGTA
Trigger: GGCTGTACCTTTTGAGCTTCATTTCAGGCTCCTGTG...GCCTCTGACCACAGGTGCTGAGTACTCAGCAGCCCTCATATAATAGGTTTGAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000295911.6
ENST00000327047.6
CDS-3UTR TCA 90 bp AAGAAGACAGAGAGGAATCCAATAAGAGTGCAGGGGGTACCTGGCCTTGGGGACTTCAAACCTATTATATaGGGGCTGCTGAGTACTCAG +
Preference number: 4 (lower is better)
Translates to: KKTERNPIRVQGVPGLGDFKPII*GLLSTQ
Trigger: CTGAGTACTCAGCAGCCCTCATATAATAGGTTTGAA...GTCCCCAAGGCCAGGTACCCCCTGCACTCTTATTGGATTCCTCTCTGTCTTCTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000295911.6
CDS-3UTR TCA 90 bp GTGATCTGTTTGCTGTCATTCTCTGCTTTTTCCTTGGTGCTTTCTGGAGGACAGGGGCACATGCAAAACTaGACACTCCGGCCATGCAAA +
Preference number: 4 (lower is better)
Translates to: VICLLSFSAFSLVLSGGQGHMQN*TLRPCK
Trigger: TTTGCATGGCCGGAGTGTTCAGTTTTGCATGTGCCC...CTGTCCTCCAGAAAGCACCAAGGAAAAAGCAGAGAATGACAGCAAACAGATCAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000327047.6
CDS-3UTR TCA 90 bp TTTACTCCTCACAGCACTAAAGCAGCCAGCTGGTTCCTGCACTCGTTCACTCGTCATGGCCAGGTCATTTaGCTGCTGATGTTTAGTTGT +
Preference number: 4 (lower is better)
Translates to: FTPHSTKAASWFLHSFTRHGQVI*LLMFSC
Trigger: ACAACTAAACATCAGCAGTCAAATGACCTGGCCATG...ACGAGTGAACGAGTGCAGGAACCAGCTGGCTGCTTTAGTGCTGTGAGGAGTAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000645441.1
CDS-3UTR GCA 90 bp AATAGGGAGCATCCTCTTCGTAAATACAGAGGTGTTTGGATCCTGATGGTGTTTTCGTGTGCTCCCTCCTaGAAGAGGTTGAGCAGGGCA +
Preference number: 4 (lower is better)
Translates to: NREHPLRKYRGVWILMVFSCAPS*KRLSRA
Trigger: TGCCCTGCTCAACCTCTTGCAGGAGGGAGCACACGA...AAACACCATCAGGATCCAAACACCTCTGTATTTACGAAGAGGATGCTCCCTATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000645441.1
CDS-3UTR GCA 90 bp TTTCAAAACTCCAAGAAGACAGAGAGGAATCCAATAAGAGTGCAGGGGGTACCTGGAAAAACTGGTTGCTaGTGCAGGGCCTGCATGGAG +
Preference number: 4 (lower is better)
Translates to: FQNSKKTERNPIRVQGVPGKTGC*CRACME
Trigger: CTCCATGCAGGCCCTGCAGCAGCAACCAGTTTTTCC...AGGTACCCCCTGCACTCTTATTGGATTCCTCTCTGTCTTCTTGGAGTTTTGAAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000295911.6
CDS-3UTR GCA 90 bp TTGGTGCTTTCTGGAGGACAGCAGGTTGAGGATGAAGGAAGGGTCAGTTCCAGGGATGCTCACTGGGATTaGTTTGAGCAAATCTGGAAA +
Preference number: 4 (lower is better)
Translates to: LVLSGGQQVEDEGRVSSRDAHWD*FEQIWK
Trigger: TTTCCAGATTTGCTCAAAGCAATCCCAGTGAGCATC...CCTGGAACTGACCCTTCCTTCATCCTCAACCTGCTGTCCTCCAGAAAGCACCAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000295911.6
ENST00000327047.6
CDS-3UTR GCA 90 bp CCACAGGAGCCTGAAATGAAGCTCAAAAGGTACAGCCCTAGGGGACCATGCAGAGATGCTCACTGGGATTaGTTTGAGCAAATCTGGAAA +
Preference number: 4 (lower is better)
Translates to: PQEPEMKLKRYSPRGPCRDAHWD*FEQIWK
Trigger: TTTCCAGATTTGCTCAAAGCAATCCCAGTGAGCATC...TCTGCATGGTCCCCTAGGGCTGTACCTTTTGAGCTTCATTTCAGGCTCCTGTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000468836.2
CDS-3UTR CCA 90 bp TTGGTGCTTTCTGGAGGACAGCAGGTTGAGGATGAAGGAAGGGTCAGTTCCAGGTTTCTTCTGTTGGCTTaGCATGATGAGAAACGGCTT +
Preference number: 4 (lower is better)
Translates to: LVLSGGQQVEDEGRVSSRFLLLA*HDEKRL
Trigger: AAGCCGTTTCTCATCATGCCAAGCCAACAGAAGAAA...CCTGGAACTGACCCTTCCTTCATCCTCAACCTGCTGTCCTCCAGAAAGCACCAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000327047.6
CDS-3UTR CCA 90 bp TGCAGGGCCTGCATGGAGTTTACTCCTCACAGCACTAAAGCAGCCAGCTGGTTCAAATACAGAGGTGTTTaGATCCTGATGGTGTTTACC +
Preference number: 4 (lower is better)
Translates to: CRACMEFTPHSTKAASWFKYRGV*ILMVFT
Trigger: GGTAAACACCATCAGGATCCAAACACCTCTGTATTT...GAACCAGCTGGCTGCTTTAGTGCTGTGAGGAGTAAACTCCATGCAGGCCCTGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000645441.1
CDS-3UTR TCA 90 bp TATTTTAAGGAGTACTTTCAAACCTATTATATGAGGGCTGCTGAGTACTCAGCAGTCCAGCTCCTGCCCTaGGGCATTGACGAGCAGAGC +
Preference number: 4 (lower is better)
Translates to: YFKEYFQTYYMRAAEYSAVQLLP*GIDEQS
Trigger: GCTCTGCTCGTCAATGCCTCAGGGCAGGAGCTGGAC...TGCTGAGTACTCAGCAGCCCTCATATAATAGGTTTGAAAGTACTCCTTAAAATA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000327047.6
CDS-3UTR TCA 90 bp CCTGGTTGCTGCTGCAGGGCCTGCATGGAGTTTACTCCTCACAGCACTAAAGCAAGGTCATTTGACTGCTaGTGTTTAGTTGTACTACAT +
Preference number: 4 (lower is better)
Translates to: PGCCCRACMEFTPHSTKARSFDC*CLVVLH
Trigger: ATGTAGTACAACTAAACATCAGCAGTCAAATGACCT...TGCTTTAGTGCTGTGAGGAGTAAACTCCATGCAGGCCCTGCAGCAGCAACCAGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000645441.1
CDS-3UTR GCA 90 bp TTGGTGCTTTCTGGAGGACAGCAGGTTGAGGATGAAGGAAGGGTCAGTTCCAGGAGATTTTTCAGCAGCTaGTCCAGGTTTTCTTTCTCT +
Preference number: 4 (lower is better)
Translates to: LVLSGGQQVEDEGRVSSRRFFSS*SRFSFS
Trigger: AGAGAAAGAAAACCTGGAGCAGCTGCTGAAAAATCT...CCTGGAACTGACCCTTCCTTCATCCTCAACCTGCTGTCCTCCAGAAAGCACCAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000295911.6
CDS-3UTR CCA 90 bp AAGGAGTACTTTCAAACCTATTATATGAGGGCTGCTGAGTACTCAGCACCTGTGCTCACACCCTCTCCGTaGAAAAGCCCGTACTGCATT +
Preference number: 4 (lower is better)
Translates to: KEYFQTYYMRAAEYSAPVLTPSP*KSPYCI
Trigger: AATGCAGTACGGGCTTTTCCACGGAGAGGGTGTGAG...CACAGGTGCTGAGTACTCAGCAGCCCTCATATAATAGGTTTGAAAGTACTCCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000327047.6
CDS-3UTR CCA 90 bp CTATCCAATAGGGAGCATCCTCTTCGTAAATACAGAGGTGTTTGGATCCTGATGACAGAGCTTATAACCTaGTTGCTGCTGCAGGGCCTG +
Preference number: 4 (lower is better)
Translates to: LSNREHPLRKYRGVWILMTELIT*LLLQGL
Trigger: CAGGCCCTGCAGCAGCAACCAGGTTATAAGCTCTGT...CATCAGGATCCAAACACCTCTGTATTTACGAAGAGGATGCTCCCTATTGGATAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000645441.1
CDS-3UTR TCA 90 bp AACTCCAAGAAGACAGAGAGGAATCCAATAAGAGTGCAGGGGGTACCTGGCCTTAAACGAGCTGACACCTaGATGTTGAGAAGGAAATCA +
Preference number: 4 (lower is better)
Translates to: NSKKTERNPIRVQGVPGLKRADT*MLRRKS
Trigger: TGATTTCCTTCTCAACATTCAGGTGTCAGCTCGTTT...AAGGCCAGGTACCCCCTGCACTCTTATTGGATTCCTCTCTGTCTTCTTGGAGTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000295911.6
CDS-3UTR TCA 90 bp AAGAAGACAGAGAGGAATCCAATAAGAGTGCAGGGGGTACCTGGCCTTGGGGACTTTAGTCAGCCAGAATaGGGTGGTATATTTTTCACT +
Preference number: 4 (lower is better)
Translates to: KKTERNPIRVQGVPGLGDFSQPE*GGIFFT
Trigger: AGTGAAAAATATACCACCTCATTCTGGCTGACTAAA...GTCCCCAAGGCCAGGTACCCCCTGCACTCTTATTGGATTCCTCTCTGTCTTCTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000295911.6
CDS-3UTR TCA 90 bp TCTGCTTTTTCCTTGGTGCTTTCTGGAGGACAGCAGGTTGAGGATGAAGGAAGGTTCAAACCTATTATATaGGGGCTGCTGAGTACTCAG +
Preference number: 4 (lower is better)
Translates to: SAFSLVLSGGQQVEDEGRFKPII*GLLSTQ
Trigger: CTGAGTACTCAGCAGCCCTCATATAATAGGTTTGAA...CCTTCCTTCATCCTCAACCTGCTGTCCTCCAGAAAGCACCAAGGAAAAAGCAGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000295911.6
ENST00000327047.6
CDS-3UTR TCA 90 bp AAGGAGTACTTTCAAACCTATTATATGAGGGCTGCTGAGTACTCAGCACCTGTGAAACTCGGTGTGTTCTaGTGTCTGCTGGCGAATAGC +
Preference number: 4 (lower is better)
Translates to: KEYFQTYYMRAAEYSAPVKLGVF*CLLANS
Trigger: GCTATTCGCCAGCAGACATCAGAACACACCGAGTTT...CACAGGTGCTGAGTACTCAGCAGCCCTCATATAATAGGTTTGAAAGTACTCCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000295911.6
ENST00000327047.6
CDS-3UTR TCA 90 bp TCTGCTTTTTCCTTGGTGCTTTCTGGAGGACAGCAGGTTGAGGATGAAGGAAGGTGTAACTCGAACTCCTaGACTCAAATGATCTTCCCA +
Preference number: 4 (lower is better)
Translates to: SAFSLVLSGGQQVEDEGRCNSNS*TQMIFP
Trigger: TGGGAAGATCATTTGAGTTCAGGAGTTCGAGTTACA...CCTTCCTTCATCCTCAACCTGCTGTCCTCCAGAAAGCACCAAGGAAAAAGCAGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000327047.6
CDS-3UTR TCA 90 bp GAGAAGAGAATGACATTGACGTGGATGCTCACTGGGATTGCTTTGAGCAAATCTGAGGTGTTTGGATCCTaGTGGTGTTTACCAGTGTCC +
Preference number: 4 (lower is better)
Translates to: EKRMTLTWMLTGIALSKSEVFGS*WCLPVS
Trigger: GGACACTGGTAAACACCATCAGGATCCAAACACCTC...AGATTTGCTCAAAGCAATCCCAGTGAGCATCCACGTCAATGTCATTCTCTTCTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000644099.1
CDS-3UTR CCA 90 bp GGAGTTTTTCAAAACTCCAAGAAGACAGAGAGGAATCCAATAAGAGTGCAGGGGTTCCAGGCTCAGCTGTaGCCTTTAGTCAGCCAGAAT +
Preference number: 4 (lower is better)
Translates to: GVFQNSKKTERNPIRVQGFQAQL*PLVSQN
Trigger: ATTCTGGCTGACTAAAGGCCACAGCTGAGCCTGGAA...CCCCTGCACTCTTATTGGATTCCTCTCTGTCTTCTTGGAGTTTTGAAAAACTCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000295911.6
CDS-3UTR CCA 90 bp AAGGAGTACTTTCAAACCTATTATATGAGGGCTGCTGAGTACTCAGCACCTGTGTGTCGTGAATGTAATTaGGACTCAGGCACGGGAGGA +
Preference number: 4 (lower is better)
Translates to: KEYFQTYYMRAAEYSAPVCRECN*DSGTGG
Trigger: TCCTCCCGTGCCTGAGTCCCAATTACATTCACGACA...CACAGGTGCTGAGTACTCAGCAGCCCTCATATAATAGGTTTGAAAGTACTCCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000327047.6
3UTR CAA 72 bp TACTCAGCACCTGTGGTCAGAGGCCTAGTGATCTGTTaGCTGTCATTCTCTGCTTTTTCCTTGGTGCTTTCT +
Preference number: 4 (lower is better)
Translates to: YSAPVVRGLVIC*LSFSAFSLVLS
Trigger: AGAAAGCACCAAGGAAAAAGCAGAGAATGACAGCAAACAGATCACTAGGCCTCTGACCACAGGTGCTGAGTA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000295911.6
ENST00000327047.6
CDS-3UTR TCA 90 bp TTTCAAACCTATTATATGAGGGCTGCTGAGTACTCAGCACCTGTGGTCAGAGGCTGGCGAATAGCGAATTaGCACCAGAGCAAGTTATTT +
Preference number: 4 (lower is better)
Translates to: FQTYYMRAAEYSAPVVRGWRIAN*HQSKLF
Trigger: AAATAACTTGCTCTGGTGTCAATTCGCTATTCGCCA...GCCTCTGACCACAGGTGCTGAGTACTCAGCAGCCCTCATATAATAGGTTTGAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000295911.6
ENST00000327047.6
CDS-3UTR TCA 90 bp TTTCAAACCTATTATATGAGGGCTGCTGAGTACTCAGCACCTGTGGTCAGAGGCTCCAGGTGTATTTCCTaGTTTAAGGGGAAAAACCAG +
Preference number: 4 (lower is better)
Translates to: FQTYYMRAAEYSAPVVRGSRCIS*FKGKNQ
Trigger: CTGGTTTTTCCCCTTAAATCAGGAAATACACCTGGA...GCCTCTGACCACAGGTGCTGAGTACTCAGCAGCCCTCATATAATAGGTTTGAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000295911.6
CDS-3UTR TCA 90 bp TTGTACATGAAGAAGGCTGTCCCCACCATGGTTAACACAATAAGGATGGCAGAGAAAGGGCAACTGAAATaGAGCTCAAAAGGTACAGCC +
Preference number: 4 (lower is better)
Translates to: LYMKKAVPTMVNTIRMAEKGQLK*SSKGTA
Trigger: GGCTGTACCTTTTGAGCTTCATTTCAGTTGCCCTTT...CTCTGCCATCCTTATTGTGTTAACCATGGTGGGGACAGCCTTCTTCATGTACAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000644099.1
CDS-3UTR TCA 90 bp TTTCAAACCTATTATATGAGGGCTGCTGAGTACTCAGCACCTGTGGTCAGAGGCAGCTGCAGATCAATTTaGTGGGTAATTCAGGGGAAA +
Preference number: 4 (lower is better)
Translates to: FQTYYMRAAEYSAPVVRGSCRSI*WVIQGK
Trigger: TTTCCCCTGAATTACCCATCAAATTGATCTGCAGCT...GCCTCTGACCACAGGTGCTGAGTACTCAGCAGCCCTCATATAATAGGTTTGAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000327047.6
CDS-3UTR TCA 90 bp TTGTACATGAAGAAGGCTGTCCCCACCATGGTTAACACAATAAGGATGGCAGAGCATGGCCAGGTCATTTaGCTGCTGATGTTTAGTTGT +
Preference number: 4 (lower is better)
Translates to: LYMKKAVPTMVNTIRMAEHGQVI*LLMFSC
Trigger: ACAACTAAACATCAGCAGTCAAATGACCTGGCCATG...CTCTGCCATCCTTATTGTGTTAACCATGGTGGGGACAGCCTTCTTCATGTACAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000644099.1
CDS-3UTR GCA 90 bp TTGGTGCTTTCTGGAGGACAGCAGGTTGAGGATGAAGGAAGGGTCAGTTCCAGGGTCAAGAAAATAGCCTaGATCAACAACAAGATAGTT +
Preference number: 4 (lower is better)
Translates to: LVLSGGQQVEDEGRVSSRVKKIA*INNKIV
Trigger: AACTATCTTGTTGTTGATGCAGGCTATTTTCTTGAC...CCTGGAACTGACCCTTCCTTCATCCTCAACCTGCTGTCCTCCAGAAAGCACCAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000295911.6
3UTR CAA 72 bp GTCCTTGTCCTCCTAGCCCACTCATTTCCAGTGCTTTaGTACTGGACCATTTCAGCTAAAGACTTACAGAAC +
Preference number: 4 (lower is better)
Translates to: VLVLLAHSFPVL*YWTISAKDLQN
Trigger: GTTCTGTAAGTCTTTAGCTGAAATGGTCCAGTACAAAAGCACTGGAAATGAGTGGGCTAGGAGGACAAGGAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000295911.6
CDS-3UTR TCA 90 bp GGTGTTCGAAGGAGTTTTTCAAAACTCCAAGAAGACAGAGAGGAATCCAATAAGGAAAAGAAGCACAACTaGGGCAGGAATGAGCCAGTG +
Preference number: 4 (lower is better)
Translates to: GVRRSFSKLQEDREESNKEKKHN*GRNEPV
Trigger: CACTGGCTCATTCCTGCCTCAGTTGTGCTTCTTTTC...CTTATTGGATTCCTCTCTGTCTTCTTGGAGTTTTGAAAAACTCCTTCGAACACC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000295911.6
CDS-3UTR TCA 90 bp AGAATGAGGTGGTATATTTTTCACTTTGCGTTTTGTAGACATAAGTCCCTTCTTTTGAGCAGGGCAGGCTaGGTAAATGGGGTACCCCTG +
Preference number: 4 (lower is better)
Translates to: RMRWYIFHFAFCRHKSLLLSRAG*VNGVPL
Trigger: CAGGGGTACCCCATTTACTCAGCCTGCCCTGCTCAA...AAGAAGGGACTTATGTCTACAAAACGCAAAGTGAAAAATATACCACCTCATTCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 21 nt.
Matches the following 1 transcripts:
ENST00000468836.2
CDS-3UTR TCA 90 bp GAGAAGAGAATGACATTGACGTGGATGCTCACTGGGATTGCTTTGAGCAAATCTCAGCCAAAGGGCAACTaGAATGAAGCTCAAAAGGTA +
Preference number: 4 (lower is better)
Translates to: EKRMTLTWMLTGIALSKSQPKGN*NEAQKV
Trigger: TACCTTTTGAGCTTCATTTCAGTTGCCCTTTGGCTG...AGATTTGCTCAAAGCAATCCCAGTGAGCATCCACGTCAATGTCATTCTCTTCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000644099.1
CDS-3UTR TCA 90 bp TCTGCTTTTTCCTTGGTGCTTTCTGGAGGACAGCAGGTTGAGGATGAAGGAAGGAGAGTTTGCAGATTTTaGCCAACAGACATGGTTAAT +
Preference number: 4 (lower is better)
Translates to: SAFSLVLSGGQQVEDEGRRVCRF*PTDMVN
Trigger: ATTAACCATGTCTGTTGGTCAAAATCTGCAAACTCT...CCTTCCTTCATCCTCAACCTGCTGTCCTCCAGAAAGCACCAAGGAAAAAGCAGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000327047.6
CDS-3UTR GCA 90 bp AGAATGAGGTGGTATATTTTTCACTTTGCGTTTTGTAGACATAAGTCCCTTCTTTCGTGTGCTCCCTCCTaGAAGAGGTTGAGCAGGGCA +
Preference number: 4 (lower is better)
Translates to: RMRWYIFHFAFCRHKSLLSCAPS*KRLSRA
Trigger: TGCCCTGCTCAACCTCTTGCAGGAGGGAGCACACGA...AAGAAGGGACTTATGTCTACAAAACGCAAAGTGAAAAATATACCACCTCATTCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000468836.2
CDS-3UTR GCA 90 bp TATTTTAAGGAGTACTTTCAAACCTATTATATGAGGGCTGCTGAGTACTCAGCATGCTGCTGCAGGGCCTaGATGGAGTTTACTCCTCAC +
Preference number: 4 (lower is better)
Translates to: YFKEYFQTYYMRAAEYSACCCRA*MEFTPH
Trigger: GTGAGGAGTAAACTCCATGCAGGCCCTGCAGCAGCA...TGCTGAGTACTCAGCAGCCCTCATATAATAGGTTTGAAAGTACTCCTTAAAATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000295911.6
CDS-3UTR GCA 90 bp GGAGTTTTTCAAAACTCCAAGAAGACAGAGAGGAATCCAATAAGAGTGCAGGGGAGCCCTAGGGGACCATaGAGAGTTTCAAAAGGTTTT +
Preference number: 4 (lower is better)
Translates to: GVFQNSKKTERNPIRVQGSPRGP*RVSKGF
Trigger: AAAACCTTTTGAAACTCTGCATGGTCCCCTAGGGCT...CCCCTGCACTCTTATTGGATTCCTCTCTGTCTTCTTGGAGTTTTGAAAAACTCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 21 nt.
Matches the following 1 transcripts:
ENST00000295911.6
CDS-3UTR CCA 90 bp AGAGAAGAGAATGACATTGACGTGGATGCTCACTGGGATTGCTTTGAGCAAATCAGAATGACATTGACGTaGATGCTCACTGGGATTGCT +
Preference number: 4 (lower is better)
Translates to: REENDIDVDAHWDCFEQIRMTLT*MLTGIA
Trigger: AGCAATCCCAGTGAGCATCCACGTCAATGTCATTCT...GATTTGCTCAAAGCAATCCCAGTGAGCATCCACGTCAATGTCATTCTCTTCTCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000644099.1
CDS-3UTR TCA 90 bp AGAATGAGGTGGTATATTTTTCACTTTGCGTTTTGTAGACATAAGTCCCTTCTTAGAGGACAGTGGCTTTaGTCCACAACGGTGTCCCCA +
Preference number: 4 (lower is better)
Translates to: RMRWYIFHFAFCRHKSLLRGQWL*STTVSP
Trigger: TGGGGACACCGTTGTGGATCAAAGCCACTGTCCTCT...AAGAAGGGACTTATGTCTACAAAACGCAAAGTGAAAAATATACCACCTCATTCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000468836.2
CDS-3UTR TCA 90 bp TTTCAAACCTATTATATGAGGGCTGCTGAGTACTCAGCACCTGTGGTCAGAGGCGAAAATGACCCAGAATaGGGTGGTATATTTTTCACT +
Preference number: 4 (lower is better)
Translates to: FQTYYMRAAEYSAPVVRGENDPE*GGIFFT
Trigger: AGTGAAAAATATACCACCTCATTCTGGGTCATTTTC...GCCTCTGACCACAGGTGCTGAGTACTCAGCAGCCCTCATATAATAGGTTTGAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000327047.6
CDS-3UTR GCA 90 bp AGAATGAGGTGGTATATTTTTCACTTTGCGTTTTGTAGACATAAGTCCCTTCTTGGAAAAACTGGTTGCTaGTGCAGGGCCTGCATGGAG +
Preference number: 4 (lower is better)
Translates to: RMRWYIFHFAFCRHKSLLGKTGC*CRACME
Trigger: CTCCATGCAGGCCCTGCAGCAGCAACCAGTTTTTCC...AAGAAGGGACTTATGTCTACAAAACGCAAAGTGAAAAATATACCACCTCATTCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000468836.2
CDS-3UTR GCA 90 bp AATAGGGAGCATCCTCTTCGTAAATACAGAGGTGTTTGGATCCTGATGGTGTTTAGCCCTAGGGGACCATaGAGAGTTTCAAAAGGTTTT +
Preference number: 4 (lower is better)
Translates to: NREHPLRKYRGVWILMVFSPRGP*RVSKGF
Trigger: AAAACCTTTTGAAACTCTGCATGGTCCCCTAGGGCT...AAACACCATCAGGATCCAAACACCTCTGTATTTACGAAGAGGATGCTCCCTATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000644099.1
CDS-3UTR GCA 90 bp AGAGAAGAGAATGACATTGACGTGGATGCTCACTGGGATTGCTTTGAGCAAATCTGGAAAAGCCCGTACTaGATTTCACCCATAAACTTG +
Preference number: 4 (lower is better)
Translates to: REENDIDVDAHWDCFEQIWKSPY*ISPINL
Trigger: CAAGTTTATGGGTGAAATGCAGTACGGGCTTTTCCA...GATTTGCTCAAAGCAATCCCAGTGAGCATCCACGTCAATGTCATTCTCTTCTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000644099.1
CDS-3UTR CCA 90 bp AAGGAGTACTTTCAAACCTATTATATGAGGGCTGCTGAGTACTCAGCACCTGTGTGCTTTGAGCAAATCTaGAAAAACTGGTTGCTGCTG +
Preference number: 4 (lower is better)
Translates to: KEYFQTYYMRAAEYSAPVCFEQI*KNWLLL
Trigger: CAGCAGCAACCAGTTTTTCCAGATTTGCTCAAAGCA...CACAGGTGCTGAGTACTCAGCAGCCCTCATATAATAGGTTTGAAAGTACTCCTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000295911.6
CDS-3UTR CCA 90 bp CACAATAAGGATGGCAGAGAAGAGAATGACATTGACGTGGATGCTCACTGGGATAAATACAGAGGTGTTTaGATCCTGATGGTGTTTACC +
Preference number: 4 (lower is better)
Translates to: HNKDGREENDIDVDAHWDKYRGV*ILMVFT
Trigger: GGTAAACACCATCAGGATCCAAACACCTCTGTATTT...ATCCCAGTGAGCATCCACGTCAATGTCATTCTCTTCTCTGCCATCCTTATTGTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000644099.1
CDS-3UTR TCA 90 bp AGAATGAGGTGGTATATTTTTCACTTTGCGTTTTGTAGACATAAGTCCCTTCTTGGGCACATGCAAAACTaGACACTCCGGCCATGCAAA +
Preference number: 4 (lower is better)
Translates to: RMRWYIFHFAFCRHKSLLGHMQN*TLRPCK
Trigger: TTTGCATGGCCGGAGTGTTCAGTTTTGCATGTGCCC...AAGAAGGGACTTATGTCTACAAAACGCAAAGTGAAAAATATACCACCTCATTCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000468836.2
CDS-3UTR TCA 90 bp TTTCATGATTCCTCAGTGGTCCTAACAATTATGTTCATTGAAAGTACTGTCGTGACTCCTGAACTCAAATaGTCTTCCCACCTTGGCCTC +
Preference number: 4 (lower is better)
Translates to: FHDSSVVLTIMFIESTVVTPELK*SSHLGL
Trigger: GAGGCCAAGGTGGGAAGATCATTTGAGTTCAGGAGT...CACGACAGTACTTTCAATGAACATAATTGTTAGGACCACTGAGGAATCATGAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000327047.6
CDS-3UTR TCA 90 bp AAGGAGTACTTTCAAACCTATTATATGAGGGCTGCTGAGTACTCAGCACCTGTGAGAACAAGACCAAGATaGTACAGTGATACCGTCATA +
Preference number: 4 (lower is better)
Translates to: KEYFQTYYMRAAEYSAPVRTRPR*YSDTVI
Trigger: TATGACGGTATCACTGTATCATCTTGGTCTTGTTCT...CACAGGTGCTGAGTACTCAGCAGCCCTCATATAATAGGTTTGAAAGTACTCCTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000327047.6
CDS-3UTR TCA 90 bp AAAGCATTGTACATGAAGAAGGCTGTCCCCACCATGGTTAACACAATAAGGATGTACATTTCCTTTATATaGGAACCGAAAGGGCCTTGC +
Preference number: 4 (lower is better)
Translates to: KALYMKKAVPTMVNTIRMYISFI*EPKGPC
Trigger: GCAAGGCCCTTTCGGTTCTCATATAAAGGAAATGTA...CATCCTTATTGTGTTAACCATGGTGGGGACAGCCTTCTTCATGTACAATGCTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000644099.1
CDS-3UTR TCA 90 bp AAACAAGATGGACAAGATTCCTGTTGTCTCACAGAGCTTATAACCTGGTTGCTGTACATTTCCTTTATATaGGAACCGAAAGGGCCTTGC +
Preference number: 4 (lower is better)
Translates to: KQDGQDSCCLTELITWLLYISFI*EPKGPC
Trigger: GCAAGGCCCTTTCGGTTCTCATATAAAGGAAATGTA...CAGCAACCAGGTTATAAGCTCTGTGAGACAACAGGAATCTTGTCCATCTTGTTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000645441.1
CDS-3UTR TCA 90 bp CACAATAAGGATGGCAGAGAAGAGAATGACATTGACGTGGATGCTCACTGGGATAGGTCATTTGACTGCTaGTGTTTAGTTGTACTACAT +
Preference number: 4 (lower is better)
Translates to: HNKDGREENDIDVDAHWDRSFDC*CLVVLH
Trigger: ATGTAGTACAACTAAACATCAGCAGTCAAATGACCT...ATCCCAGTGAGCATCCACGTCAATGTCATTCTCTTCTCTGCCATCCTTATTGTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000644099.1
CDS-3UTR GCA 90 bp AATAGGGAGCATCCTCTTCGTAAATACAGAGGTGTTTGGATCCTGATGGTGTTTGATGCTCACTGGGATTaGTTTGAGCAAATCTGGAAA +
Preference number: 4 (lower is better)
Translates to: NREHPLRKYRGVWILMVFDAHWD*FEQIWK
Trigger: TTTCCAGATTTGCTCAAAGCAATCCCAGTGAGCATC...AAACACCATCAGGATCCAAACACCTCTGTATTTACGAAGAGGATGCTCCCTATT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000644099.1
CDS-3UTR GCA 90 bp TATTTTAAGGAGTACTTTCAAACCTATTATATGAGGGCTGCTGAGTACTCAGCACTGCTTTTTCCTTGGTaGTTTCTGGAGGACAGCAGG +
Preference number: 4 (lower is better)
Translates to: YFKEYFQTYYMRAAEYSALLFPW*FLEDSR
Trigger: CCTGCTGTCCTCCAGAAAGCACCAAGGAAAAAGCAG...TGCTGAGTACTCAGCAGCCCTCATATAATAGGTTTGAAAGTACTCCTTAAAATA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000295911.6
ENST00000327047.6
CDS-3UTR GCA 90 bp AGAATGAGGTGGTATATTTTTCACTTTGCGTTTTGTAGACATAAGTCCCTTCTTAACTCCGAGGGCACATaGAAAACTGAACACTCCGGC +
Preference number: 4 (lower is better)
Translates to: RMRWYIFHFAFCRHKSLLNSEGT*KTEHSG
Trigger: GCCGGAGTGTTCAGTTTTGCATGTGCCCTCGGAGTT...AAGAAGGGACTTATGTCTACAAAACGCAAAGTGAAAAATATACCACCTCATTCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000468836.2
CDS-3UTR GCA 90 bp AAACAAGATGGACAAGATTCCTGTTGTCTCACAGAGCTTATAACCTGGTTGCTGTGGAAAAGCCCGTACTaGATTTCACCCATAAACTTG +
Preference number: 4 (lower is better)
Translates to: KQDGQDSCCLTELITWLLWKSPY*ISPINL
Trigger: CAAGTTTATGGGTGAAATGCAGTACGGGCTTTTCCA...CAGCAACCAGGTTATAAGCTCTGTGAGACAACAGGAATCTTGTCCATCTTGTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000645441.1
CDS-3UTR GCA 90 bp TTTCATGATTCCTCAGTGGTCCTAACAATTATGTTCATTGAAAGTACTGTCGTGCTTGGCCTCCTGAAGTaGTGGAATTACAGGTGTGAG +
Preference number: 4 (lower is better)
Translates to: FHDSSVVLTIMFIESTVVLGLLK*WNYRCE
Trigger: CTCACACCTGTAATTCCAGCACTTCAGGAGGCCAAG...CACGACAGTACTTTCAATGAACATAATTGTTAGGACCACTGAGGAATCATGAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000327047.6
CDS-3UTR CCA 90 bp AGAATGAGGTGGTATATTTTTCACTTTGCGTTTTGTAGACATAAGTCCCTTCTTCTCACACCCTCTCCGTaGAAAAGCCCGTACTGCATT +
Preference number: 4 (lower is better)
Translates to: RMRWYIFHFAFCRHKSLLLTPSP*KSPYCI
Trigger: AATGCAGTACGGGCTTTTCCACGGAGAGGGTGTGAG...AAGAAGGGACTTATGTCTACAAAACGCAAAGTGAAAAATATACCACCTCATTCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000468836.2
CDS-3UTR CCA 90 bp TATTTTAAGGAGTACTTTCAAACCTATTATATGAGGGCTGCTGAGTACTCAGCACTGCCTTTGACTACCTaGGTCAAGCAATTTCCCACC +
Preference number: 4 (lower is better)
Translates to: YFKEYFQTYYMRAAEYSALPLTT*VKQFPT
Trigger: GGTGGGAAATTGCTTGACCCAGGTAGTCAAAGGCAG...TGCTGAGTACTCAGCAGCCCTCATATAATAGGTTTGAAAGTACTCCTTAAAATA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000327047.6
CDS-3UTR TCA 90 bp GGTGTTCGAAGGAGTTTTTCAAAACTCCAAGAAGACAGAGAGGAATCCAATAAGTGGCGAATAGCGAATTaGCACCAGAGCAAGTTATTT +
Preference number: 4 (lower is better)
Translates to: GVRRSFSKLQEDREESNKWRIAN*HQSKLF
Trigger: AAATAACTTGCTCTGGTGTCAATTCGCTATTCGCCA...CTTATTGGATTCCTCTCTGTCTTCTTGGAGTTTTGAAAAACTCCTTCGAACACC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000295911.6
CDS-3UTR TCA 90 bp TATTTTAAGGAGTACTTTCAAACCTATTATATGAGGGCTGCTGAGTACTCAGCACTAGTCAACTGCCTTTaGCTACCTGGGTCAAGCAAT +
Preference number: 4 (lower is better)
Translates to: YFKEYFQTYYMRAAEYSALVNCL*LPGSSN
Trigger: ATTGCTTGACCCAGGTAGTCAAAGGCAGTTGACTAG...TGCTGAGTACTCAGCAGCCCTCATATAATAGGTTTGAAAGTACTCCTTAAAATA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000327047.6
CDS-3UTR GCA 90 bp TATTTTAAGGAGTACTTTCAAACCTATTATATGAGGGCTGCTGAGTACTCAGCAAGGGTCTCACTTTATTaGCCAGGCTGTAACTCGAAC +
Preference number: 4 (lower is better)
Translates to: YFKEYFQTYYMRAAEYSARVSLY*PGCNSN
Trigger: GTTCGAGTTACAGCCTGGGCAATAAAGTGAGACCCT...TGCTGAGTACTCAGCAGCCCTCATATAATAGGTTTGAAAGTACTCCTTAAAATA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000327047.6
CDS-3UTR GCA 90 bp TACTGTTTTAGGAAAGCGATTGCAGCTCAGTTTTCTGAAATCTGGCAACAAATGGATGCTCACTGGGATTaGTTTGAGCAAATCTGGAAA +
Preference number: 4 (lower is better)
Translates to: YCFRKAIAAQFSEIWQQMDAHWD*FEQIWK
Trigger: TTTCCAGATTTGCTCAAAGCAATCCCAGTGAGCATC...CATTTGTTGCCAGATTTCAGAAAACTGAGCTGCAATCGCTTTCCTAAAACAGTA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000327047.6
CDS-3UTR GCA 90 bp TATTTTAAGGAGTACTTTCAAACCTATTATATGAGGGCTGCTGAGTACTCAGCAAGCCCTAGGGGACCATaGAGAGTTTCAAAAGGTTTT +
Preference number: 4 (lower is better)
Translates to: YFKEYFQTYYMRAAEYSASPRGP*RVSKGF
Trigger: AAAACCTTTTGAAACTCTGCATGGTCCCCTAGGGCT...TGCTGAGTACTCAGCAGCCCTCATATAATAGGTTTGAAAGTACTCCTTAAAATA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000295911.6
ENST00000327047.6
CDS-3UTR CCA 90 bp TTTCATGATTCCTCAGTGGTCCTAACAATTATGTTCATTGAAAGTACTGTCGTGAGAATGACATTGACGTaGATGCTCACTGGGATTGCT +
Preference number: 4 (lower is better)
Translates to: FHDSSVVLTIMFIESTVVRMTLT*MLTGIA
Trigger: AGCAATCCCAGTGAGCATCCACGTCAATGTCATTCT...CACGACAGTACTTTCAATGAACATAATTGTTAGGACCACTGAGGAATCATGAAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000327047.6
CDS-3UTR TCA 90 bp TTTCATGATTCCTCAGTGGTCCTAACAATTATGTTCATTGAAAGTACTGTCGTGTGTCACGAAGGGTCCTaGTGCTTTAATATATGCAGA +
Preference number: 4 (lower is better)
Translates to: FHDSSVVLTIMFIESTVVCHEGS*CFNICR
Trigger: TCTGCATATATTAAAGCATCAGGACCCTTCGTGACA...CACGACAGTACTTTCAATGAACATAATTGTTAGGACCACTGAGGAATCATGAAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000327047.6
CDS-3UTR GCA 90 bp AGAATGAGGTGGTATATTTTTCACTTTGCGTTTTGTAGACATAAGTCCCTTCTTAGCCCTAGGGGACCATaGAGAGTTTCAAAAGGTTTT +
Preference number: 4 (lower is better)
Translates to: RMRWYIFHFAFCRHKSLLSPRGP*RVSKGF
Trigger: AAAACCTTTTGAAACTCTGCATGGTCCCCTAGGGCT...AAGAAGGGACTTATGTCTACAAAACGCAAAGTGAAAAATATACCACCTCATTCT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENST00000468836.2
CDS-3UTR GCA 90 bp TATTTTAAGGAGTACTTTCAAACCTATTATATGAGGGCTGCTGAGTACTCAGCATGGAAAAGCCCGTACTaGATTTCACCCATAAACTTG +
Preference number: 4 (lower is better)
Translates to: YFKEYFQTYYMRAAEYSAWKSPY*ISPINL
Trigger: CAAGTTTATGGGTGAAATGCAGTACGGGCTTTTCCA...TGCTGAGTACTCAGCAGCCCTCATATAATAGGTTTGAAAGTACTCCTTAAAATA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000327047.6
CDS-3UTR CCA 90 bp AGAATGAGGTGGTATATTTTTCACTTTGCGTTTTGTAGACATAAGTCCCTTCTTAGAATGACATTGACGTaGATGCTCACTGGGATTGCT +
Preference number: 4 (lower is better)
Translates to: RMRWYIFHFAFCRHKSLLRMTLT*MLTGIA
Trigger: AGCAATCCCAGTGAGCATCCACGTCAATGTCATTCT...AAGAAGGGACTTATGTCTACAAAACGCAAAGTGAAAAATATACCACCTCATTCT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000468836.2
CDS-3UTR CCA 90 bp TATTTTAAGGAGTACTTTCAAACCTATTATATGAGGGCTGCTGAGTACTCAGCACCAGTGCTTTTGTACTaGACCATTTCAGCTAAAGAC +
Preference number: 4 (lower is better)
Translates to: YFKEYFQTYYMRAAEYSAPVLLY*TISAKD
Trigger: GTCTTTAGCTGAAATGGTCCAGTACAAAAGCACTGG...TGCTGAGTACTCAGCAGCCCTCATATAATAGGTTTGAAAGTACTCCTTAAAATA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000295911.6
CDS-3UTR TCA 90 bp AGAATGAGGTGGTATATTTTTCACTTTGCGTTTTGTAGACATAAGTCCCTTCTTTCACTGGGATTGCTTTaGGCAAATCTGGAAAAACTG +
Preference number: 4 (lower is better)
Translates to: RMRWYIFHFAFCRHKSLLSLGLL*ANLEKL
Trigger: CAGTTTTTCCAGATTTGCTCAAAGCAATCCCAGTGA...AAGAAGGGACTTATGTCTACAAAACGCAAAGTGAAAAATATACCACCTCATTCT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000468836.2
CDS-3UTR TCA 90 bp TATTTTAAGGAGTACTTTCAAACCTATTATATGAGGGCTGCTGAGTACTCAGCATTTGCAAAAGGGAACTaGAATCCAGCAAGTCGTATT +
Preference number: 4 (lower is better)
Translates to: YFKEYFQTYYMRAAEYSAFAKGN*NPASRI
Trigger: AATACGACTTGCTGGATTTCAGTTCCCTTTTGCAAA...TGCTGAGTACTCAGCAGCCCTCATATAATAGGTTTGAAAGTACTCCTTAAAATA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000327047.6
CDS-3UTR GCA 90 bp AGAATGAGGTGGTATATTTTTCACTTTGCGTTTTGTAGACATAAGTCCCTTCTTTGGAAAAGCCCGTACTaGATTTCACCCATAAACTTG +
Preference number: 4 (lower is better)
Translates to: RMRWYIFHFAFCRHKSLLWKSPY*ISPINL
Trigger: CAAGTTTATGGGTGAAATGCAGTACGGGCTTTTCCA...AAGAAGGGACTTATGTCTACAAAACGCAAAGTGAAAAATATACCACCTCATTCT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000468836.2
CDS-3UTR CCA 90 bp TACTGTTTTAGGAAAGCGATTGCAGCTCAGTTTTCTGAAATCTGGCAACAAATGATGATTTTCTTCTGTTaGCTTGGCATGATGAGAAAC +
Preference number: 4 (lower is better)
Translates to: YCFRKAIAAQFSEIWQQMMIFFC*LGMMRN
Trigger: GTTTCTCATCATGCCAAGCCAACAGAAGAAAATCAT...CATTTGTTGCCAGATTTCAGAAAACTGAGCTGCAATCGCTTTCCTAAAACAGTA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000327047.6
CDS-3UTR CCA 90 bp TTTCATGATTCCTCAGTGGTCCTAACAATTATGTTCATTGAAAGTACTGTCGTGCAGTTTTCTGAAATCTaGCAACAAATGTGTGGATAT +
Preference number: 4 (lower is better)
Translates to: FHDSSVVLTIMFIESTVVQFSEI*QQMCGY
Trigger: ATATCCACACATTTGTTGCCAGATTTCAGAAAACTG...CACGACAGTACTTTCAATGAACATAATTGTTAGGACCACTGAGGAATCATGAAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000327047.6
CDS GCA 90 bp CCCAACCCACACTGCCTCACACCCTCTCCGTGGAAAAGCCCGTACTaGATTTCACCCATAAACTTGTCCAGCTCCTGCCCTGAGGCATTG +
Preference number: 5 (lower is better)
Translates to: PNPHCLTPSPWKSPY*ISPINLSSSCPEAL
Trigger: CAATGCCTCAGGGCAGGAGCTGGACAAGTTTATGGGTGAAATGCAGTACGGGCTTTTCCACGGAGAGGGTGTGAGGCAGTGTGGGTTGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000327047.6
ENST00000328863.8
ENST00000468836.2
ENST00000472224.1
CDS-3UTR CAA 90 bp CCACAGGAGCCTGAAATGAAGCTCAAAAGGTACAGCCCTAGGGGACCATGCAGATCCTGCCCTGAGGCATaGACGAGCAGAGCTCCCGTT +
Preference number: 5 (lower is better)
Translates to: PQEPEMKLKRYSPRGPCRSCPEA*TSRAPV
Trigger: AACGGGAGCTCTGCTCGTCAATGCCTCAGGGCAGGA...TCTGCATGGTCCCCTAGGGCTGTACCTTTTGAGCTTCATTTCAGGCTCCTGTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000468836.2
CDS TCA 90 bp AAGCCCGTACTGCATTTCACCCATAAACTTGTCCAGCTCCTGCCCTaGGGCATTGACGAGCAGAGCTCCCGTTTTGCAGAGGACAGTGGC +
Preference number: 5 (lower is better)
Translates to: KPVLHFTHKLVQLLP*GIDEQSSRFAEDSG
Trigger: GCCACTGTCCTCTGCAAAACGGGAGCTCTGCTCGTCAATGCCTCAGGGCAGGAGCTGGACAAGTTTATGGGTGAAATGCAGTACGGGCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000327047.6
ENST00000328863.8
ENST00000468836.2
ENST00000472224.1
CDS-3UTR CAA 90 bp CCACAGGAGCCTGAAATGAAGCTCAAAAGGTACAGCCCTAGGGGACCATGCAGACAGAGGACAGTGGCTTaGATCCACAACGGTGTCCCC +
Preference number: 5 (lower is better)
Translates to: PQEPEMKLKRYSPRGPCRQRTVA*IHNGVP
Trigger: GGGGACACCGTTGTGGATCAAAGCCACTGTCCTCTG...TCTGCATGGTCCCCTAGGGCTGTACCTTTTGAGCTTCATTTCAGGCTCCTGTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000468836.2
CDS-3UTR CAA 90 bp AGTGCAGGGGGTACCTGGCCTTGGGGACCTCCAACCAACTCCTCACGCAGGAGACTCACTGGGATTGCTTaGAGCAAATCTGGAAAAACT +
Preference number: 5 (lower is better)
Translates to: SAGGTWPWGPPTNSSRRRLTGIA*SKSGKT
Trigger: AGTTTTTCCAGATTTGCTCAAAGCAATCCCAGTGAG...TCTCCTGCGTGAGGAGTTGGTTGGAGGTCCCCAAGGCCAGGTACCCCCTGCACT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000295911.6
CDS-3UTR CAA 90 bp CCACAGGAGCCTGAAATGAAGCTCAAAAGGTACAGCCCTAGGGGACCATGCAGAAGCAGAGCTCCCGTTTaGCAGAGGACAGTGGCTTTG +
Preference number: 5 (lower is better)
Translates to: PQEPEMKLKRYSPRGPCRSRAPV*QRTVAL
Trigger: CAAAGCCACTGTCCTCTGCAAAACGGGAGCTCTGCT...TCTGCATGGTCCCCTAGGGCTGTACCTTTTGAGCTTCATTTCAGGCTCCTGTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000468836.2
CDS GCA 90 bp TGGAAAAGCCCGTACTGCATTTCACCCATAAACTTGTCCAGCTCCTaGCCTGAGGCATTGACGAGCAGAGCTCCCGTTTTGCAGAGGACA +
Preference number: 5 (lower is better)
Translates to: WKSPYCISPINLSSS*PEALTSRAPVLQRT
Trigger: TGTCCTCTGCAAAACGGGAGCTCTGCTCGTCAATGCCTCAGGGCAGGAGCTGGACAAGTTTATGGGTGAAATGCAGTACGGGCTTTTCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000327047.6
ENST00000328863.8
ENST00000468836.2
ENST00000472224.1
CDS GCA 90 bp TTTCCTTTATATGAGAACCGAAAGGGCCTTGCTCCCAACCCACACTaGCTCACACCCTCTCCGTGGAAAAGCCCGTACTGCATTTCACCC +
Preference number: 5 (lower is better)
Translates to: FPLYENRKGLAPNPH*LTPSPWKSPYCISP
Trigger: GGGTGAAATGCAGTACGGGCTTTTCCACGGAGAGGGTGTGAGGCAGTGTGGGTTGGGAGCAAGGCCCTTTCGGTTCTCATATAAAGGAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000644099.1
ENST00000645441.1
CDS-3UTR CAA 90 bp CCACAGGAGCCTGAAATGAAGCTCAAAAGGTACAGCCCTAGGGGACCATGCAGAATCTGGAAAAACTGGTaGCTGCTGCAGGGCCTGCAT +
Preference number: 5 (lower is better)
Translates to: PQEPEMKLKRYSPRGPCRIWKNW*LLQGLH
Trigger: ATGCAGGCCCTGCAGCAGCAACCAGTTTTTCCAGAT...TCTGCATGGTCCCCTAGGGCTGTACCTTTTGAGCTTCATTTCAGGCTCCTGTGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000468836.2
CDS-3UTR CAA 90 bp CCACAGGAGCCTGAAATGAAGCTCAAAAGGTACAGCCCTAGGGGACCATGCAGAATTTCACCCATAAACTaGTCCAGCTCCTGCCCTGAG +
Preference number: 5 (lower is better)
Translates to: PQEPEMKLKRYSPRGPCRISPIN*SSSCPE
Trigger: CTCAGGGCAGGAGCTGGACAAGTTTATGGGTGAAAT...TCTGCATGGTCCCCTAGGGCTGTACCTTTTGAGCTTCATTTCAGGCTCCTGTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000468836.2
CDS-3UTR CAA 90 bp AGAGAGGAATCCAATAAGAGTGCAGGGGGTACCTGGCCTTGGGGACCTCCAACCGGTTTTCCAAAAGCATaGTACATGAAGAAGGCTGTC +
Preference number: 5 (lower is better)
Translates to: REESNKSAGGTWPWGPPTGFPKA*YMKKAV
Trigger: GACAGCCTTCTTCATGTACAATGCTTTTGGAAAACC...GGTTGGAGGTCCCCAAGGCCAGGTACCCCCTGCACTCTTATTGGATTCCTCTCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENST00000295911.6
CDS-3UTR CAA 90 bp AGAGAGGAATCCAATAAGAGTGCAGGGGGTACCTGGCCTTGGGGACCTCCAACCCGGAACAGAGAACGATaGGAGACTTGTTTTCTAAAG +
Preference number: 5 (lower is better)
Translates to: REESNKSAGGTWPWGPPTRNRER*ETCFLK
Trigger: CTTTAGAAAACAAGTCTCCAATCGTTCTCTGTTCCG...GGTTGGAGGTCCCCAAGGCCAGGTACCCCCTGCACTCTTATTGGATTCCTCTCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000295911.6
CDS-3UTR CAA 90 bp TTTCAAACCTATTATATGAGGGCTGCTGAGTACTCAGCACCTGTGGTCAGAGGCAGCAGAGCTCCCGTTTaGCAGAGGACAGTGGCTTTG +
Preference number: 5 (lower is better)
Translates to: FQTYYMRAAEYSAPVVRGSRAPV*QRTVAL
Trigger: CAAAGCCACTGTCCTCTGCAAAACGGGAGCTCTGCT...GCCTCTGACCACAGGTGCTGAGTACTCAGCAGCCCTCATATAATAGGTTTGAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000327047.6
CDS TCA 90 bp CCAATAGGGAGCATCCTCTTCGTAAATACAGAGGTGTTTGGATCCTaGTGGTGTTTACCAGTGTCCTCACTCAGGAGTCATGGCCAGGTC +
Preference number: 5 (lower is better)
Translates to: PIGSILFVNTEVFGS*WCLPVSSLRSHGQV
Trigger: GACCTGGCCATGACTCCTGAGTGAGGACACTGGTAAACACCATCAGGATCCAAACACCTCTGTATTTACGAAGAGGATGCTCCCTATTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000644099.1
ENST00000645441.1
CDS GCA 90 bp ATTGCTTTGAGCAAATCTGGAAAAACTGGTTGCTGCTGCAGGGCCTaGATGGAGTTTACTCCTCACAGCACTAAAGCAGCCAGCTGGTTC +
Preference number: 5 (lower is better)
Translates to: IALSKSGKTGCCCRA*MEFTPHSTKAASWF
Trigger: GAACCAGCTGGCTGCTTTAGTGCTGTGAGGAGTAAACTCCATGCAGGCCCTGCAGCAGCAACCAGTTTTTCCAGATTTGCTCAAAGCAAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000295911.6
ENST00000468836.2
CDS GCA 90 bp GATGGCAGAGAAGAGAATGACATTGACGTGGATGCTCACTGGGATTaGTTTGAGCAAATCTGGAAAAACTGGTTGCTGCTGCAGGGCCTG +
Preference number: 5 (lower is better)
Translates to: DGREENDIDVDAHWD*FEQIWKNWLLLQGL
Trigger: CAGGCCCTGCAGCAGCAACCAGTTTTTCCAGATTTGCTCAAAGCAATCCCAGTGAGCATCCACGTCAATGTCATTCTCTTCTCTGCCATC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000295911.6
ENST00000468836.2
CDS CCA 90 bp AATGACATTGACGTGGATGCTCACTGGGATTGCTTTGAGCAAATCTaGAAAAACTGGTTGCTGCTGCAGGGCCTGCATGGAGTTTACTCC +
Preference number: 5 (lower is better)
Translates to: NDIDVDAHWDCFEQI*KNWLLLQGLHGVYS
Trigger: GGAGTAAACTCCATGCAGGCCCTGCAGCAGCAACCAGTTTTTCCAGATTTGCTCAAAGCAATCCCAGTGAGCATCCACGTCAATGTCATT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000295911.6
ENST00000468836.2
CDS-3UTR CAA 90 bp GTGATCTGTTTGCTGTCATTCTCTGCTTTTTCCTTGGTGCTTTCTGGAGGACAGATCTGGAAAAACTGGTaGCTGCTGCAGGGCCTGCAT +
Preference number: 5 (lower is better)
Translates to: VICLLSFSAFSLVLSGGQIWKNW*LLQGLH
Trigger: ATGCAGGCCCTGCAGCAGCAACCAGTTTTTCCAGAT...CTGTCCTCCAGAAAGCACCAAGGAAAAAGCAGAGAATGACAGCAAACAGATCAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000295911.6
CDS-3UTR CAA 90 bp GCTGGCAGCCAAAGGGCAACTGAAATGAAGCTCAAAAGGTACAGCCCTAGGGGAGGTTTTCCAAAAGCATaGTACATGAAGAAGGCTGTC +
Preference number: 5 (lower is better)
Translates to: AGSQRATEMKLKRYSPRGGFPKA*YMKKAV
Trigger: GACAGCCTTCTTCATGTACAATGCTTTTGGAAAACC...TCCCCTAGGGCTGTACCTTTTGAGCTTCATTTCAGTTGCCCTTTGGCTGCCAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENST00000644099.1
CDS TCA 90 bp TTTAAAGATCTACAGAAAGAACTTTCCAGGGAAAAGAAGCACAACTaGGGCAGGAATGAGCCAGTGCAGTGGAGCCTGGTGAATGGTGGG +
Preference number: 5 (lower is better)
Translates to: FKDLQKELSREKKHN*GRNEPVQWSLVNGG
Trigger: CCCACCATTCACCAGGCTCCACTGCACTGGCTCATTCCTGCCTCAGTTGTGCTTCTTTTCCCTGGAAAGTTCTTTCTGTAGATCTTTAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000295911.6
ENST00000485607.1
CDS CCA 90 bp GTGCTATCCAATAGGGAGCATCCTCTTCGTAAATACAGAGGTGTTTaGATCCTGATGGTGTTTACCAGTGTCCTCACTCAGGAGTCATGG +
Preference number: 5 (lower is better)
Translates to: VLSNREHPLRKYRGV*ILMVFTSVLTQESW
Trigger: CCATGACTCCTGAGTGAGGACACTGGTAAACACCATCAGGATCCAAACACCTCTGTATTTACGAAGAGGATGCTCCCTATTGGATAGCAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000644099.1
ENST00000645441.1
CDS-3UTR CAA 90 bp TCTGCTTTTTCCTTGGTGCTTTCTGGAGGACAGCAGGTTGAGGATGAAGGAAGGCAGCTGCAGATCAATTaGATGGGTAATTCAGGGGAA +
Preference number: 5 (lower is better)
Translates to: SAFSLVLSGGQQVEDEGRQLQIN*MGNSGE
Trigger: TTCCCCTGAATTACCCATCAAATTGATCTGCAGCTG...CCTTCCTTCATCCTCAACCTGCTGTCCTCCAGAAAGCACCAAGGAAAAAGCAGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000327047.6
CDS-3UTR CAA 90 bp AGTTTACTCCTCACAGCACTAAAGCAGCCAGCTGGTTCCTGCACTCGTTCACTCTGGACAAGATTCCTGTaGTCTCACAGAGCTTATAAC +
Preference number: 5 (lower is better)
Translates to: SLLLTALKQPAGSCTRSLWTRFL*SHRAYN
Trigger: GTTATAAGCTCTGTGAGACAACAGGAATCTTGTCCA...GAGTGAACGAGTGCAGGAACCAGCTGGCTGCTTTAGTGCTGTGAGGAGTAAACT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000645441.1
CDS-3UTR CAA 90 bp TCTGCTTTTTCCTTGGTGCTTTCTGGAGGACAGCAGGTTGAGGATGAAGGAAGGGGTTTTCCAAAAGCATaGTACATGAAGAAGGCTGTC +
Preference number: 5 (lower is better)
Translates to: SAFSLVLSGGQQVEDEGRGFPKA*YMKKAV
Trigger: GACAGCCTTCTTCATGTACAATGCTTTTGGAAAACC...CCTTCCTTCATCCTCAACCTGCTGTCCTCCAGAAAGCACCAAGGAAAAAGCAGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000295911.6
ENST00000327047.6
CDS-3UTR CAA 90 bp TTTCATGATTCCTCAGTGGTCCTAACAATTATGTTCATTGAAAGTACTGTCGTGTCCTGCCCTGAGGCATaGACGAGCAGAGCTCCCGTT +
Preference number: 5 (lower is better)
Translates to: FHDSSVVLTIMFIESTVVSCPEA*TSRAPV
Trigger: AACGGGAGCTCTGCTCGTCAATGCCTCAGGGCAGGA...CACGACAGTACTTTCAATGAACATAATTGTTAGGACCACTGAGGAATCATGAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000327047.6
CDS-3UTR CAA 90 bp AAGGAGTACTTTCAAACCTATTATATGAGGGCTGCTGAGTACTCAGCACCTGTGATTTCACCCATAAACTaGTCCAGCTCCTGCCCTGAG +
Preference number: 5 (lower is better)
Translates to: KEYFQTYYMRAAEYSAPVISPIN*SSSCPE
Trigger: CTCAGGGCAGGAGCTGGACAAGTTTATGGGTGAAAT...CACAGGTGCTGAGTACTCAGCAGCCCTCATATAATAGGTTTGAAAGTACTCCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000327047.6
CDS-3UTR CAA 90 bp TTTCATGATTCCTCAGTGGTCCTAACAATTATGTTCATTGAAAGTACTGTCGTGCAGAGGACAGTGGCTTaGATCCACAACGGTGTCCCC +
Preference number: 5 (lower is better)
Translates to: FHDSSVVLTIMFIESTVVQRTVA*IHNGVP
Trigger: GGGGACACCGTTGTGGATCAAAGCCACTGTCCTCTG...CACGACAGTACTTTCAATGAACATAATTGTTAGGACCACTGAGGAATCATGAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000327047.6
CDS-3UTR CAA 90 bp AAGGAGTACTTTCAAACCTATTATATGAGGGCTGCTGAGTACTCAGCACCTGTGCTGGCGAATAGCGAATaGACACCAGAGCAAGTTATT +
Preference number: 5 (lower is better)
Translates to: KEYFQTYYMRAAEYSAPVLANSE*TPEQVI
Trigger: AATAACTTGCTCTGGTGTCAATTCGCTATTCGCCAG...CACAGGTGCTGAGTACTCAGCAGCCCTCATATAATAGGTTTGAAAGTACTCCTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000295911.6
ENST00000327047.6
CDS TCA 90 bp TACCAGTGTCCTCACTCAGGAGTCATGGCCAGGTCATTTGACTGCTaGTGTTTAGTTGTACTACATTTCCTTTATATGAGAACCGAAAGG +
Preference number: 5 (lower is better)
Translates to: YQCPHSGVMARSFDC*CLVVLHFLYMRTER
Trigger: CCTTTCGGTTCTCATATAAAGGAAATGTAGTACAACTAAACATCAGCAGTCAAATGACCTGGCCATGACTCCTGAGTGAGGACACTGGTA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000644099.1
ENST00000645441.1
CDS TCA 90 bp TGGTGTTTACCAGTGTCCTCACTCAGGAGTCATGGCCAGGTCATTTaGCTGCTGATGTTTAGTTGTACTACATTTCCTTTATATGAGAAC +
Preference number: 5 (lower is better)
Translates to: WCLPVSSLRSHGQVI*LLMFSCTTFPLYEN
Trigger: GTTCTCATATAAAGGAAATGTAGTACAACTAAACATCAGCAGTCAAATGACCTGGCCATGACTCCTGAGTGAGGACACTGGTAAACACCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000644099.1
ENST00000645441.1
CDS CCA 90 bp AATAAGGATGGCAGAGAAGAGAATGACATTGACGTGGATGCTCACTaGGATTGCTTTGAGCAAATCTGGAAAAATATGTGCCAGGCATTA +
Preference number: 5 (lower is better)
Translates to: NKDGREENDIDVDAH*DCFEQIWKNMCQAL
Trigger: TAATGCCTGGCACATATTTTTCCAGATTTGCTCAAAGCAATCCCAGTGAGCATCCACGTCAATGTCATTCTCTTCTCTGCCATCCTTATT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000485607.1
CDS-3UTR CAA 90 bp TATTTTAAGGAGTACTTTCAAACCTATTATATGAGGGCTGCTGAGTACTCAGCAGAGAAGAGAATGACATaGACGTGGATGCTCACTGGG +
Preference number: 5 (lower is better)
Translates to: YFKEYFQTYYMRAAEYSAEKRMT*TWMLTG
Trigger: CCCAGTGAGCATCCACGTCAATGTCATTCTCTTCTC...TGCTGAGTACTCAGCAGCCCTCATATAATAGGTTTGAAAGTACTCCTTAAAATA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000295911.6
ENST00000327047.6
CDS-3UTR CAA 90 bp TATTTTAAGGAGTACTTTCAAACCTATTATATGAGGGCTGCTGAGTACTCAGCATCATTTCCAGTGCTTTaGTACTGGACCATTTCAGCT +
Preference number: 5 (lower is better)
Translates to: YFKEYFQTYYMRAAEYSASFPVL*YWTISA
Trigger: AGCTGAAATGGTCCAGTACAAAAGCACTGGAAATGA...TGCTGAGTACTCAGCAGCCCTCATATAATAGGTTTGAAAGTACTCCTTAAAATA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000295911.6
CDS-3UTR CAA 90 bp TACTGTTTTAGGAAAGCGATTGCAGCTCAGTTTTCTGAAATCTGGCAACAAATGGTTTTAGGAAAGCGATaGCAGCTCAGTTTTCTGAAA +
Preference number: 5 (lower is better)
Translates to: YCFRKAIAAQFSEIWQQMVLGKR*QLSFLK
Trigger: TTTCAGAAAACTGAGCTGCAATCGCTTTCCTAAAAC...CATTTGTTGCCAGATTTCAGAAAACTGAGCTGCAATCGCTTTCCTAAAACAGTA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENST00000327047.6
CDS-3UTR CAA 90 bp AGAATGAGGTGGTATATTTTTCACTTTGCGTTTTGTAGACATAAGTCCCTTCTTCTCACTGGGATTGCTTaGAGCAAATCTGGAAAAACT +
Preference number: 5 (lower is better)
Translates to: RMRWYIFHFAFCRHKSLLLTGIA*SKSGKT
Trigger: AGTTTTTCCAGATTTGCTCAAAGCAATCCCAGTGAG...AAGAAGGGACTTATGTCTACAAAACGCAAAGTGAAAAATATACCACCTCATTCT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000468836.2
CDS-3UTR CAA 90 bp AGAATGAGGTGGTATATTTTTCACTTTGCGTTTTGTAGACATAAGTCCCTTCTTGGTTTTCCAAAAGCATaGTACATGAAGAAGGCTGTC +
Preference number: 5 (lower is better)
Translates to: RMRWYIFHFAFCRHKSLLGFPKA*YMKKAV
Trigger: GACAGCCTTCTTCATGTACAATGCTTTTGGAAAACC...AAGAAGGGACTTATGTCTACAAAACGCAAAGTGAAAAATATACCACCTCATTCT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENST00000468836.2
CDS-3UTR CAA 90 bp TTTCATGATTCCTCAGTGGTCCTAACAATTATGTTCATTGAAAGTACTGTCGTGATATGGAGTAACAATTaGTCGATTCTAGTCAACTGC +
Preference number: 5 (lower is better)
Translates to: FHDSSVVLTIMFIESTVVIWSNN*SILVNC
Trigger: GCAGTTGACTAGAATCGACAAATTGTTACTCCATAT...CACGACAGTACTTTCAATGAACATAATTGTTAGGACCACTGAGGAATCATGAAA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000327047.6
CDS CAA 90 bp GAGGCATTGACGAGCAGAGCTCCCGTTTTGCAGAGGACAGTGGCTTaGATCCACAACGGTGTCCCCAAGGCTGTCACAACTCCGAGGGCA +
Preference number: 6 (lower is better)
Translates to: EALTSRAPVLQRTVA*IHNGVPKAVTTPRA
Trigger: TGCCCTCGGAGTTGTGACAGCCTTGGGGACACCGTTGTGGATCAAAGCCACTGTCCTCTGCAAAACGGGAGCTCTGCTCGTCAATGCCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000327047.6
ENST00000328863.8
ENST00000468836.2
ENST00000472224.1
CDS CAA 90 bp TTGTCCAGCTCCTGCCCTGAGGCATTGACGAGCAGAGCTCCCGTTTaGCAGAGGACAGTGGCTTTGATCCACAACGGTGTCCCCAAGGCT +
Preference number: 6 (lower is better)
Translates to: LSSSCPEALTSRAPV*QRTVALIHNGVPKA
Trigger: AGCCTTGGGGACACCGTTGTGGATCAAAGCCACTGTCCTCTGCAAAACGGGAGCTCTGCTCGTCAATGCCTCAGGGCAGGAGCTGGACAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000327047.6
ENST00000328863.8
ENST00000468836.2
ENST00000472224.1
CDS TCA 72 bp CGAGCAGAGCTCCCGTTTTGCAGAGGACAGTGGCTTTaGTCCACAACGGTGTCCCCAAGGCTGTCACAACTC +
Preference number: 6 (lower is better)
Translates to: RAELPFCRGQWL*STTVSPRLSQL
Trigger: GAGTTGTGACAGCCTTGGGGACACCGTTGTGGATCAAAGCCACTGTCCTCTGCAAAACGGGAGCTCTGCTCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000327047.6
ENST00000328863.8
ENST00000468836.2
ENST00000472224.1
CDS CAA 90 bp ACACCCTCTCCGTGGAAAAGCCCGTACTGCATTTCACCCATAAACTaGTCCAGCTCCTGCCCTGAGGCATTGACGAGCAGAGCTCCCGTT +
Preference number: 6 (lower is better)
Translates to: TPSPWKSPYCISPIN*SSSCPEALTSRAPV
Trigger: AACGGGAGCTCTGCTCGTCAATGCCTCAGGGCAGGAGCTGGACAAGTTTATGGGTGAAATGCAGTACGGGCTTTTCCACGGAGAGGGTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000327047.6
ENST00000328863.8
ENST00000468836.2
ENST00000472224.1
CDS CAA 72 bp ACGAGCAGAGCTCCCGTTTTGCAGAGGACAGTGGCTTaGATCCACAACGGTGTCCCCAAGGCTGTCACAACT +
Preference number: 6 (lower is better)
Translates to: TSRAPVLQRTVA*IHNGVPKAVTT
Trigger: AGTTGTGACAGCCTTGGGGACACCGTTGTGGATCAAAGCCACTGTCCTCTGCAAAACGGGAGCTCTGCTCGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000327047.6
ENST00000328863.8
ENST00000468836.2
ENST00000472224.1
CDS CAA 72 bp CCGTGGAAAAGCCCGTACTGCATTTCACCCATAAACTaGTCCAGCTCCTGCCCTGAGGCATTGACGAGCAGA +
Preference number: 6 (lower is better)
Translates to: PWKSPYCISPIN*SSSCPEALTSR
Trigger: TCTGCTCGTCAATGCCTCAGGGCAGGAGCTGGACAAGTTTATGGGTGAAATGCAGTACGGGCTTTTCCACGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000327047.6
ENST00000328863.8
ENST00000468836.2
ENST00000472224.1
CDS TCA 72 bp TGTTGGGAGTCCCATGAAGGGGTCAAGAAAATAGCATaGGAACCGAAAGGGCCTTGCTCCCAACCCACACTG +
Preference number: 6 (lower is better)
Translates to: CWESHEGVKKIA*EPKGPCSQPTL
Trigger: CAGTGTGGGTTGGGAGCAAGGCCCTTTCGGTTCTCATGCTATTTTCTTGACCCCTTCATGGGACTCCCAACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000468836.2
CDS CCA 72 bp GACGTGGATGCTCACTGGGATTGCTTTGAGCAAATCTaGAAAAACTGGTTGCTGCTGCAGGGCCTGCATGGA +
Preference number: 6 (lower is better)
Translates to: DVDAHWDCFEQI*KNWLLLQGLHG
Trigger: TCCATGCAGGCCCTGCAGCAGCAACCAGTTTTTCCAGATTTGCTCAAAGCAATCCCAGTGAGCATCCACGTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000295911.6
ENST00000468836.2
CDS CAA 90 bp TACTGCATTTCACCCATAAACTTGTCCAGCTCCTGCCCTGAGGCATaGACGAGCAGAGCTCCCGTTTTGCAGAGGACAGTGGCTTTGATC +
Preference number: 6 (lower is better)
Translates to: YCISPINLSSSCPEA*TSRAPVLQRTVALI
Trigger: GATCAAAGCCACTGTCCTCTGCAAAACGGGAGCTCTGCTCGTCAATGCCTCAGGGCAGGAGCTGGACAAGTTTATGGGTGAAATGCAGTA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000327047.6
ENST00000328863.8
ENST00000468836.2
ENST00000472224.1
CDS TCA 72 bp CTACAGAAAGAACTTTCCAGGGAAAAGAAGCACAACTaGGGCAGGAATGAGCCAGTGCAGTGGAGCCTGGTG +
Preference number: 6 (lower is better)
Translates to: LQKELSREKKHN*GRNEPVQWSLV
Trigger: CACCAGGCTCCACTGCACTGGCTCATTCCTGCCTCAGTTGTGCTTCTTTTCCCTGGAAAGTTCTTTCTGTAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000295911.6
ENST00000485607.1
CDS GCA 72 bp AGCAAATCTGGAAAAACTGGTTGCTGCTGCAGGGCCTaGATGGAGTTTACTCCTCACAGCACTAAAGCAGCC +
Preference number: 6 (lower is better)
Translates to: SKSGKTGCCCRA*MEFTPHSTKAA
Trigger: GGCTGCTTTAGTGCTGTGAGGAGTAAACTCCATGCAGGCCCTGCAGCAGCAACCAGTTTTTCCAGATTTGCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000295911.6
ENST00000468836.2
CDS CCA 72 bp AATCTGGAAAAACTGGTTGCTGCTGCAGGGCCTGCATaGAGTTTACTCCTCACAGCACTAAAGCAGCCAGCT +
Preference number: 6 (lower is better)
Translates to: NLEKLVAAAGPA*SLLLTALKQPA
Trigger: AGCTGGCTGCTTTAGTGCTGTGAGGAGTAAACTCCATGCAGGCCCTGCAGCAGCAACCAGTTTTTCCAGATT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000295911.6
ENST00000468836.2
CDS CAA 90 bp GCAGAGAAGAGAATGACATTGACGTGGATGCTCACTGGGATTGCTTaGAGCAAATCTGGAAAAACTGGTTGCTGCTGCAGGGCCTGCATG +
Preference number: 6 (lower is better)
Translates to: AEKRMTLTWMLTGIA*SKSGKTGCCCRACM
Trigger: CATGCAGGCCCTGCAGCAGCAACCAGTTTTTCCAGATTTGCTCAAAGCAATCCCAGTGAGCATCCACGTCAATGTCATTCTCTTCTCTGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000295911.6
ENST00000468836.2
CDS GCA 72 bp ATTGCTTTGAGCAAATCTGGAAAAACTGGTTGCTGCTaGAGGGCCTGCATGGAGTTTACTCCTCACAGCACT +
Preference number: 6 (lower is better)
Translates to: IALSKSGKTGCC*RACMEFTPHST
Trigger: AGTGCTGTGAGGAGTAAACTCCATGCAGGCCCTGCAGCAGCAACCAGTTTTTCCAGATTTGCTCAAAGCAAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000295911.6
ENST00000468836.2
CDS TCA 72 bp AGCATCCTCTTCGTAAATACAGAGGTGTTTGGATCCTaGTGGTGTTTACCAGTGTCCTCACTCAGGAGTCAT +
Preference number: 6 (lower is better)
Translates to: SILFVNTEVFGS*WCLPVSSLRSH
Trigger: ATGACTCCTGAGTGAGGACACTGGTAAACACCATCAGGATCCAAACACCTCTGTATTTACGAAGAGGATGCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000644099.1
ENST00000645441.1
CDS GCA 72 bp GAAGAGAATGACATTGACGTGGATGCTCACTGGGATTaGTTTGAGCAAATCTGGAAAAACTGGTTGCTGCTG +
Preference number: 6 (lower is better)
Translates to: EENDIDVDAHWD*FEQIWKNWLLL
Trigger: CAGCAGCAACCAGTTTTTCCAGATTTGCTCAAAGCAATCCCAGTGAGCATCCACGTCAATGTCATTCTCTTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000295911.6
ENST00000468836.2
CDS TCA 72 bp CCAGTGTCCTCACTCAGGAGTCATGGCCAGGTCATTTaGCTGCTGATGTTTAGTTGTACTACATTTCCTTTA +
Preference number: 6 (lower is better)
Translates to: PVSSLRSHGQVI*LLMFSCTTFPL
Trigger: TAAAGGAAATGTAGTACAACTAAACATCAGCAGTCAAATGACCTGGCCATGACTCCTGAGTGAGGACACTGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000644099.1
ENST00000645441.1
CDS CAA 90 bp GCAGAGAAGAGAATGACATTGACGTGGATGCTCACTGGGATTGCTTaGAGCAAATCTGGAAAAATATGTGCCAGGCATTATTCTAGGTGT +
Preference number: 6 (lower is better)
Translates to: AEKRMTLTWMLTGIA*SKSGKICARHYSRC
Trigger: ACACCTAGAATAATGCCTGGCACATATTTTTCCAGATTTGCTCAAAGCAATCCCAGTGAGCATCCACGTCAATGTCATTCTCTTCTCTGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000485607.1
CDS GCA 72 bp TGTTGGGAGTCCCATGAAGGGGTCAAGAAAATAGCCTaGATCAACAACAAGATAGTTTCAGATAGTGATACA +
Preference number: 6 (lower is better)
Translates to: CWESHEGVKKIA*INNKIVSDSDT
Trigger: TGTATCACTATCTGAAACTATCTTGTTGTTGATGCAGGCTATTTTCTTGACCCCTTCATGGGACTCCCAACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000295911.6
ENST00000485607.1