Pregenerated sensors for CLGN (Homo sapiens)
Ensembl gene IDs: ENSG00000153132Ensembl transcript IDs: ENST00000325617.10, ENST00000414773.5, ENST00000509477.1
Found 18 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | CCTGTTTTCGGCAGTGACAGCTCAGATGTCCAAGTCGTTGCCACTTaGTCCCCGCGTCTCTTCAGACCAGTCCCGCCGGCGGCCGCGCAG | + |
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Preference number: 5 (lower is better) Translates to: PVFGSDSSDVQVVAT*SPRLFRPVPPAAAQ Trigger: CTGCGCGGCCGCCGGCGGGACTGGTCTGAAGAGACGCGGGGACCAAGTGGCAACGACTTGGACATCTGAGCTGTCACTGCCGAAAACAGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000325617.10 ENST00000414773.5 |
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| CDS TCA 90 bp | CTTTGTTGCTTGGGCAGATGCTCTCTTGCGGCCTGTTTTCGGCAGTaGCAGCTCAGATGTCCAAGTCGTTGCCACTTGGTCCCCGCGTCT | + |
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Preference number: 5 (lower is better) Translates to: LCCLGRCSLAACFRQ*QLRCPSRCHLVPAS Trigger: AGACGCGGGGACCAAGTGGCAACGACTTGGACATCTGAGCTGTCACTGCCGAAAACAGGCCGCAAGAGAGCATCTGCCCAAGCAACAAAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000414773.5 ENST00000509477.1 |
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| CDS TCA 90 bp | TGGAAATGCATATTGATTATCTCTCTTGCGGCCTGTTTTCGGCAGTaGCAGCTCAGATGTCCAAGTCGTTGCCACTTGGTCCCCGCGTCT | + |
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Preference number: 5 (lower is better) Translates to: WKCILIISLAACFRQ*QLRCPSRCHLVPAS Trigger: AGACGCGGGGACCAAGTGGCAACGACTTGGACATCTGAGCTGTCACTGCCGAAAACAGGCCGCAAGAGAGATAATCAATATGCATTTCCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000325617.10 |
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| CDS CCA 90 bp | TTTTCGAGGACTCCAGATTCCCTGATAGTTAGGATTATCGACCAGTaGAGGTCTCCATACTCCTTTGTATTTTGGGTTATCTATCATGGG | + |
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Preference number: 5 (lower is better) Translates to: FSRTPDSLIVRIIDQ*RSPYSFVFWVIYHG Trigger: CCCATGATAGATAACCCAAAATACAAAGGAGTATGGAGACCTCCACTGGTCGATAATCCTAACTATCAGGGAATCTGGAGTCCTCGAAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000325617.10 ENST00000414773.5 |
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| CDS TCA 90 bp | ATATTTCAATCTAGTTTAGTCCTTTCGTACTCTTCTTTTGCGTACTaGCTTTATCGGCCCATCTCCAGATCCTGTGCTCTCATCTGCTTC | + |
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Preference number: 5 (lower is better) Translates to: IFQSSLVLSYSSFAY*LYRPISRSCALICF Trigger: GAAGCAGATGAGAGCACAGGATCTGGAGATGGGCCGATAAAGTCAGTACGCAAAAGAAGAGTACGAAAGGACTAAACTAGATTGAAATAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000325617.10 ENST00000414773.5 |
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| CDS CAA 90 bp | TCTTGCGGCCTGTTTTCGGCAGTGACAGCTCAGATGTCCAAGTCGTaGCCACTTGGTCCCCGCGTCTCTTCAGACCAGTCCCGCCGGCGG | + |
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Preference number: 6 (lower is better) Translates to: SCGLFSAVTAQMSKS*PLGPRVSSDQSRRR Trigger: CCGCCGGCGGGACTGGTCTGAAGAGACGCGGGGACCAAGTGGCAACGACTTGGACATCTGAGCTGTCACTGCCGAAAACAGGCCGCAAGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000325617.10 ENST00000414773.5 |
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| CDS CAA 72 bp | CTGTTTTCGGCAGTGACAGCTCAGATGTCCAAGTCGTaGCCACTTGGTCCCCGCGTCTCTTCAGACCAGTCC | + |
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Preference number: 6 (lower is better) Translates to: LFSAVTAQMSKS*PLGPRVSSDQS Trigger: GGACTGGTCTGAAGAGACGCGGGGACCAAGTGGCAACGACTTGGACATCTGAGCTGTCACTGCCGAAAACAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000325617.10 ENST00000414773.5 |
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| CDS TCA 72 bp | TTGGGCAGATGCTCTCTTGCGGCCTGTTTTCGGCAGTaGCAGCTCAGATGTCCAAGTCGTTGCCACTTGGTC | + |
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Preference number: 6 (lower is better) Translates to: LGRCSLAACFRQ*QLRCPSRCHLV Trigger: GACCAAGTGGCAACGACTTGGACATCTGAGCTGTCACTGCCGAAAACAGGCCGCAAGAGAGCATCTGCCCAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000414773.5 ENST00000509477.1 |
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| CDS GCA 72 bp | TTGCTTTTAACTCCCAAGCAAACACCTCCTCTTTGTTaGTTGGGCAGATGCTCTCTTGCGGCCTGTTTTCGG | + |
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Preference number: 6 (lower is better) Translates to: LLLTPKQTPPLC*LGRCSLAACFR Trigger: CCGAAAACAGGCCGCAAGAGAGCATCTGCCCAAGCAACAAAGAGGAGGTGTTTGCTTGGGAGTTAAAAGCAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000414773.5 ENST00000509477.1 |
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| CDS TCA 72 bp | ATATTGATTATCTCTCTTGCGGCCTGTTTTCGGCAGTaGCAGCTCAGATGTCCAAGTCGTTGCCACTTGGTC | + |
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Preference number: 6 (lower is better) Translates to: ILIISLAACFRQ*QLRCPSRCHLV Trigger: GACCAAGTGGCAACGACTTGGACATCTGAGCTGTCACTGCCGAAAACAGGCCGCAAGAGAGATAATCAATAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000325617.10 |
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| CDS CAA 72 bp | TTTGCTTTTAACTCCCAAGCAAACACCTCCTCTTTGTaGCTTGGGCAGATGCTCTCTTGCGGCCTGTTTTCG | + |
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Preference number: 6 (lower is better) Translates to: FAFNSQANTSSL*LGQMLSCGLFS Trigger: CGAAAACAGGCCGCAAGAGAGCATCTGCCCAAGCAACAAAGAGGAGGTGTTTGCTTGGGAGTTAAAAGCAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000414773.5 ENST00000509477.1 |
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| CDS TCA 72 bp | TCTAGTTTAGTCCTTTCGTACTCTTCTTTTGCGTACTaGCTTTATCGGCCCATCTCCAGATCCTGTGCTCTC | + |
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Preference number: 6 (lower is better) Translates to: SSLVLSYSSFAY*LYRPISRSCAL Trigger: GAGAGCACAGGATCTGGAGATGGGCCGATAAAGTCAGTACGCAAAAGAAGAGTACGAAAGGACTAAACTAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000325617.10 ENST00000414773.5 |
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| CDS CAA 72 bp | TATCGACCAGTGGAGGTCTCCATACTCCTTTGTATTTaGGGTTATCTATCATGGGAGGTTTCCACTCACCAC | + |
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Preference number: 6 (lower is better) Translates to: YRPVEVSILLCI*GYLSWEVSTHH Trigger: GTGGTGAGTGGAAACCTCCCATGATAGATAACCCAAAATACAAAGGAGTATGGAGACCTCCACTGGTCGATA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000325617.10 ENST00000414773.5 |
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| CDS TCA 72 bp | TTCATCATCAAGCCAGCCAGCAGGTTTAACAACACTTaGATCTTCTATTTGGGCAGGTTCACTTTCATCCCA | + |
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Preference number: 6 (lower is better) Translates to: FIIKPASRFNNT*IFYLGRFTFIP Trigger: TGGGATGAAAGTGAACCTGCCCAAATAGAAGATTCAAGTGTTGTTAAACCTGCTGGCTGGCTTGATGATGAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000325617.10 ENST00000414773.5 |
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| CDS CCA 72 bp | ACTCCAGATTCCCTGATAGTTAGGATTATCGACCAGTaGAGGTCTCCATACTCCTTTGTATTTTGGGTTATC | + |
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Preference number: 6 (lower is better) Translates to: TPDSLIVRIIDQ*RSPYSFVFWVI Trigger: GATAACCCAAAATACAAAGGAGTATGGAGACCTCCACTGGTCGATAATCCTAACTATCAGGGAATCTGGAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000325617.10 ENST00000414773.5 |
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| CDS CAA 72 bp | TTAGGATTATCGACCAGTGGAGGTCTCCATACTCCTTaGTATTTTGGGTTATCTATCATGGGAGGTTTCCAC | + |
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Preference number: 6 (lower is better) Translates to: LGLSTSGGLHTP*YFGLSIMGGFH Trigger: GTGGAAACCTCCCATGATAGATAACCCAAAATACAAAGGAGTATGGAGACCTCCACTGGTCGATAATCCTAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000325617.10 ENST00000414773.5 |
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| CDS CAA 72 bp | TTTTTATCATTGGGATCTTCAATTTCTTTGGGAGGTTaGATAGGAGGAACCACATCCTCTAGGAGGCTTCCT | + |
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Preference number: 6 (lower is better) Translates to: FLSLGSSISLGG*IGGTTSSRRLP Trigger: AGGAAGCCTCCTAGAGGATGTGGTTCCTCCTATCAAACCTCCCAAAGAAATTGAAGATCCCAATGATAAAAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000325617.10 ENST00000414773.5 |
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| CDS TCA 72 bp | ATCATTATTTTCCATCTCCAACCATCTGCAGCCCAGTaGTCTGCTACTTCCTTTTCCGAACAGATAATAAAA | + |
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Preference number: 6 (lower is better) Translates to: IIIFHLQPSAAQ*SATSFSEQIIK Trigger: TTTTATTATCTGTTCGGAAAAGGAAGTAGCAGATCACTGGGCTGCAGATGGTTGGAGATGGAAAATAATGAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000325617.10 ENST00000414773.5 |
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