RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CLEC5A (Homo sapiens)

Ensembl gene IDs: ENSG00000258227

Ensembl transcript IDs: ENST00000418498.5, ENST00000438351.1, ENST00000439991.1, ENST00000470595.1, ENST00000481301.1, ENST00000546910.6, ENST00000551012.6

Found 246 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CCTGCCCAGACCTCTCTCCATTCCCATAAACAATGCTGCTGTCCGTaGTGCTCCAAGCTCAGCACTAGGAGCCCTCCCCAAGGCCAAGCC +
Preference number: 1 (lower is better)
Translates to: PAQTSLHSHKQCCCP*CSKLSTRSPPQGQA
Trigger: GGCTTGGCCTTGGGGAGGGCTCCTAGTGCTGAGCTTGGAGCAGCACGGACAGCAGCATTGTTTATGGGAATGGAGAGAGGTCTGGGCAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000418498.5
ENST00000546910.6
ENST00000551012.6
3UTR GCA 90 bp GCCCAGACCTCTCTCCATTCCCATAAACAATGCTGCTGTCCGTGCTaGTCCAAGCTCAGCACTAGGAGCCCTCCCCAAGGCCAAGCCTTA +
Preference number: 1 (lower is better)
Translates to: AQTSLHSHKQCCCPC*SKLSTRSPPQGQAL
Trigger: TAAGGCTTGGCCTTGGGGAGGGCTCCTAGTGCTGAGCTTGGAGCAGCACGGACAGCAGCATTGTTTATGGGAATGGAGAGAGGTCTGGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000418498.5
ENST00000546910.6
ENST00000551012.6
3UTR GCA 90 bp GGTTCCTATCCTGCCCAGACCTCTCTCCATTCCCATAAACAATGCTaGTGTCCGTGCTGCTCCAAGCTCAGCACTAGGAGCCCTCCCCAA +
Preference number: 1 (lower is better)
Translates to: GSYPAQTSLHSHKQC*CPCCSKLSTRSPPQ
Trigger: TTGGGGAGGGCTCCTAGTGCTGAGCTTGGAGCAGCACGGACAGCAGCATTGTTTATGGGAATGGAGAGAGGTCTGGGCAGGATAGGAACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000418498.5
ENST00000546910.6
ENST00000551012.6
3UTR GCA 90 bp GAAGGTTCCTATCCTGCCCAGACCTCTCTCCATTCCCATAAACAATaGTGCTGTCCGTGCTGCTCCAAGCTCAGCACTAGGAGCCCTCCC +
Preference number: 1 (lower is better)
Translates to: EGSYPAQTSLHSHKQ*CCPCCSKLSTRSPP
Trigger: GGGAGGGCTCCTAGTGCTGAGCTTGGAGCAGCACGGACAGCAGCATTGTTTATGGGAATGGAGAGAGGTCTGGGCAGGATAGGAACCTTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000418498.5
ENST00000546910.6
ENST00000551012.6
3UTR TCA 90 bp TCTCTTTTCCTACTCTTCGTCGGCTGGACCAGTTCTAGATCAATGTaGTGCCAATCAGTGCCAGGCTCCTTGGGGTCAGTAGGCTGTGCC +
Preference number: 1 (lower is better)
Translates to: SLFLLFVGWTSSRSM*CQSVPGSLGSVGCA
Trigger: GGCACAGCCTACTGACCCCAAGGAGCCTGGCACTGATTGGCATCACATTGATCTAGAACTGGTCCAGCCGACGAAGAGTAGGAAAAGAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000546910.6
3UTR CCA 90 bp GAGCCTCTGCTACCCTCGCTTGTGGAGTTAGGAGGGGCATGTGAATaGGGTTCCCTTGAGAACAGAGACGAAGTCACAGGACCTATGTTT +
Preference number: 1 (lower is better)
Translates to: EPLLPSLVELGGACE*GSLENRDEVTGPMF
Trigger: AAACATAGGTCCTGTGACTTCGTCTCTGTTCTCAAGGGAACCCCATTCACATGCCCCTCCTAACTCCACAAGCGAGGGTAGCAGAGGCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000418498.5
ENST00000546910.6
ENST00000551012.6
3UTR GCA 90 bp GGCTTTGCTGAAGAACAGAAATCTAGTGTGTTTGGCTCCCTTGGCTaGCTGGTTTTCTTCAAAGGGGTCTCCAAGAAGGTTCCTATCCTG +
Preference number: 1 (lower is better)
Translates to: GFAEEQKSSVFGSLG*LVFFKGVSKKVPIL
Trigger: CAGGATAGGAACCTTCTTGGAGACCCCTTTGAAGAAAACCAGGCAGCCAAGGGAGCCAAACACACTAGATTTCTGTTCTTCAGCAAAGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000418498.5
ENST00000546910.6
ENST00000551012.6
3UTR CCA 90 bp TTGCTGAAGAACAGAAATCTAGTGTGTTTGGCTCCCTTGGCTGCCTaGTTTTCTTCAAAGGGGTCTCCAAGAAGGTTCCTATCCTGCCCA +
Preference number: 1 (lower is better)
Translates to: LLKNRNLVCLAPLAA*FSSKGSPRRFLSCP
Trigger: TGGGCAGGATAGGAACCTTCTTGGAGACCCCTTTGAAGAAAACCAGGCAGCCAAGGGAGCCAAACACACTAGATTTCTGTTCTTCAGCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000418498.5
ENST00000546910.6
ENST00000551012.6
3UTR TCA 90 bp TTTATTTTTGTGCTTAGAGTTTCAGCTGATCTAGGGTGGCTCTGCTaGTCTCAGGTGGATTTGTTCGTGAGTCTAAGGGTTGGATGGGGG +
Preference number: 1 (lower is better)
Translates to: FIFVLRVSADLGWLC*SQVDLFVSLRVGWG
Trigger: CCCCCATCCAACCCTTAGACTCACGAACAAATCCACCTGAGATCAGCAGAGCCACCCTAGATCAGCTGAAACTCTAAGCACAAAAATAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000546910.6
3UTR TCA 90 bp TTTCTCTTTCTTATGCACCAAGCAGAGTATATAGCTGATGTCTTGTaGGTGTGGAGAACAGCCAGGGTACTCCAAGACTTGTCTTCCTCT +
Preference number: 1 (lower is better)
Translates to: FLFLMHQAEYIADVL*VWRTARVLQDLSSS
Trigger: AGAGGAAGACAAGTCTTGGAGTACCCTGGCTGTTCTCCACACTCACAAGACATCAGCTATATACTCTGCTTGGTGCATAAGAAAGAGAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000546910.6
3UTR TCA 90 bp AGGCATCTCTTTTCTCTTTCTTATGCACCAAGCAGAGTATATAGCTaGTGTCTTGTGAGTGTGGAGAACAGCCAGGGTACTCCAAGACTT +
Preference number: 1 (lower is better)
Translates to: RHLFSLSYAPSRVYS*CLVSVENSQGTPRL
Trigger: AAGTCTTGGAGTACCCTGGCTGTTCTCCACACTCACAAGACATCAGCTATATACTCTGCTTGGTGCATAAGAAAGAGAAAAGAGATGCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000546910.6
3UTR TCA 90 bp GGATTCAAAAAGAGTTGCAAGTATAGTTCTTGTCACAGGGAACTGTaGTCATTTGGCATTCTTCTCACAGATCCTGCGGTAGCTGATGTC +
Preference number: 1 (lower is better)
Translates to: GFKKSCKYSSCHREL*SFGILLTDPAVADV
Trigger: GACATCAGCTACCGCAGGATCTGTGAGAAGAATGCCAAATGATCACAGTTCCCTGTGACAAGAACTATACTTGCAACTCTTTTTGAATCC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000418498.5
3UTR-3UTR CCA 90 bp TGGCTCCCTTGGCTGCCTGGTTTTCTTCAAAGGGGTCTCCAAGAAGGTTCCTATGCTCAGTTTCCCAAATaGGCAAGGACCGCTACTGGT +
Preference number: 2 (lower is better)
Translates to: WLPWLPGFLQRGLQEGSYAQFPK*ARTATG
Trigger: ACCAGTAGCGGTCCTTGCCCATTTGGGAAACTGAGC...ATAGGAACCTTCTTGGAGACCCCTTTGAAGAAAACCAGGCAGCCAAGGGAGCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000418498.5
ENST00000546910.6
ENST00000551012.6
3UTR-3UTR TCA 90 bp GGGCATGTGAATGGGGTTCCCTTGAGAACAGAGACGAAGTCACAGGACCTATGTAGATCCTGCGGTAGCTaGTGTCACATGATGCAGCAT +
Preference number: 2 (lower is better)
Translates to: GHVNGVPLRTETKSQDLCRSCGS*CHMMQH
Trigger: ATGCTGCATCATGTGACATCAGCTACCGCAGGATCT...ACATAGGTCCTGTGACTTCGTCTCTGTTCTCAAGGGAACCCCATTCACATGCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000418498.5
3UTR-3UTR GCA 90 bp CAAGGCCAAGCCTTAGTTCAGACTGAGGAGAGCCTCTGCTACCCTCGCTTGTGGTTGATCAGTCAGAAATaGTCAGTACTACAGAAGCGG +
Preference number: 2 (lower is better)
Translates to: QGQALVQTEESLCYPRLWLISQK*SVLQKR
Trigger: CCGCTTCTGTAGTACTGAGCATTTCTGACTGATCAA...CCACAAGCGAGGGTAGCAGAGGCTCTCCTCAGTCTGAACTAAGGCTTGGCCTTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000418498.5
ENST00000546910.6
ENST00000551012.6
3UTR-3UTR TCA 90 bp CTGGTTTTCTTCAAAGGGGTCTCCAAGAAGGTTCCTATCCTGCCCAGACCTCTCTGTCACAGGGAACTGTaGTCATTTGGCATTCTTCTC +
Preference number: 2 (lower is better)
Translates to: LVFFKGVSKKVPILPRPLCHREL*SFGILL
Trigger: GAGAAGAATGCCAAATGATCACAGTTCCCTGTGACA...GAGAGGTCTGGGCAGGATAGGAACCTTCTTGGAGACCCCTTTGAAGAAAACCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000418498.5
3UTR-3UTR GCA 90 bp TGGCTCCCTTGGCTGCCTGGTTTTCTTCAAAGGGGTCTCCAAGAAGGTTCCTATTTGATCAGTCAGAAATaGTCAGTACTACAGAAGCGG +
Preference number: 2 (lower is better)
Translates to: WLPWLPGFLQRGLQEGSYLISQK*SVLQKR
Trigger: CCGCTTCTGTAGTACTGAGCATTTCTGACTGATCAA...ATAGGAACCTTCTTGGAGACCCCTTTGAAGAAAACCAGGCAGCCAAGGGAGCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000418498.5
ENST00000546910.6
ENST00000551012.6
3UTR-3UTR GCA 90 bp TCTTCCCTTCTCAACGGTAGCACTTATCCTTTCCCAACACAGTCAGAGAACTTGCATTCCCATAAACAATaGTGCTGTCCGTGCTGCTCC +
Preference number: 2 (lower is better)
Translates to: SSLLNGSTYPFPTQSENLHSHKQ*CCPCCS
Trigger: GGAGCAGCACGGACAGCAGCATTGTTTATGGGAATG...CAAGTTCTCTGACTGTGTTGGGAAAGGATAAGTGCTACCGTTGAGAAGGGAAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000546910.6
3UTR-3UTR CCA 90 bp CCTGGTTTTCTTCAAAGGGGTCTCCAAGAAGGTTCCTATCCTGCCCAGACCTCTGCCAGACGACCTGTATaGATTCAAAAAGAGTTGCAA +
Preference number: 2 (lower is better)
Translates to: PGFLQRGLQEGSYPAQTSARRPV*IQKELQ
Trigger: TTGCAACTCTTTTTGAATCCATACAGGTCGTCTGGC...AGAGGTCTGGGCAGGATAGGAACCTTCTTGGAGACCCCTTTGAAGAAAACCAGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000418498.5
ENST00000546910.6
ENST00000551012.6
3UTR-3UTR TCA 90 bp TCTTCCCTTCTCAACGGTAGCACTTATCCTTTCCCAACACAGTCAGAGAACTTGAGTTCTAGATCAATGTaGTGCCAATCAGTGCCAGGC +
Preference number: 2 (lower is better)
Translates to: SSLLNGSTYPFPTQSENLSSRSM*CQSVPG
Trigger: GCCTGGCACTGATTGGCATCACATTGATCTAGAACT...CAAGTTCTCTGACTGTGTTGGGAAAGGATAAGTGCTACCGTTGAGAAGGGAAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000546910.6
3UTR-3UTR TCA 90 bp CTTGAGAACAGAGACGAAGTCACAGGACCTATGTTTATCCCTCTTCCACCATGGCAATGGTCGCACAGTTaGAATTCTGATTCTGATTGG +
Preference number: 2 (lower is better)
Translates to: LENRDEVTGPMFIPLPPWQWSHS*NSDSDW
Trigger: CCAATCAGAATCAGAATTTCAACTGTGCGACCATTG...CCATGGTGGAAGAGGGATAAACATAGGTCCTGTGACTTCGTCTCTGTTCTCAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000418498.5
3UTR-3UTR TCA 90 bp CTTGAGAACAGAGACGAAGTCACAGGACCTATGTTTATCCCTCTTCCACCATGGGTAGCTGATGTCACATaGTGCAGCATCAAATGTCTT +
Preference number: 2 (lower is better)
Translates to: LENRDEVTGPMFIPLPPWVADVT*CSIKCL
Trigger: AAGACATTTGATGCTGCATCATGTGACATCAGCTAC...CCATGGTGGAAGAGGGATAAACATAGGTCCTGTGACTTCGTCTCTGTTCTCAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000418498.5
3UTR-3UTR GCA 90 bp GCCTGGTTTTCTTCAAAGGGGTCTCCAAGAAGGTTCCTATCCTGCCCAGACCTCGGATTCAAAAAGAGTTaGAAGTATAGTTCTTGTCAC +
Preference number: 2 (lower is better)
Translates to: AWFSSKGSPRRFLSCPDLGFKKS*KYSSCH
Trigger: GTGACAAGAACTATACTTGCAACTCTTTTTGAATCC...GAGGTCTGGGCAGGATAGGAACCTTCTTGGAGACCCCTTTGAAGAAAACCAGGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000418498.5
ENST00000546910.6
ENST00000551012.6
3UTR-3UTR CCA 90 bp CTTCTCAACGGTAGCACTTATCCTTTCCCAACACAGTCAGAGAACTTGTATCTCGCCTTTCTTCCAGTGTaGCCAAATGAACTCCCTGTT +
Preference number: 2 (lower is better)
Translates to: LLNGSTYPFPTQSENLYLAFLPV*PNELPV
Trigger: AACAGGGAGTTCATTTGGCCACACTGGAAGAAAGGC...GAGATACAAGTTCTCTGACTGTGTTGGGAAAGGATAAGTGCTACCGTTGAGAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000546910.6
3UTR-3UTR TCA 90 bp AGTGTGTCTTTGATCTCATGTGGCTTGGCCACAACATTTTTAAGGCACCCTTCTGTTTCCTGTCTCAGGTaGTTTCCATTTGACCCTGAT +
Preference number: 2 (lower is better)
Translates to: SVSLISCGLATTFLRHPSVSCLR*FPFDPD
Trigger: ATCAGGGTCAAATGGAAATCACCTGAGACAGGAAAC...AGAAGGGTGCCTTAAAAATGTTGTGGCCAAGCCACATGAGATCAAAGACACACT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000546910.6
3UTR CAA 90 bp CCCACATTTGAGGTCATGAAAAGTGTGTCTTTGATCTCATGTGGCTaGGCCACAACATTTTTAAGGCACCCTTCTCTGACTTGCACAAAT +
Preference number: 2 (lower is better)
Translates to: PTFEVMKSVSLISCG*ATTFLRHPSLTCTN
Trigger: ATTTGTGCAAGTCAGAGAAGGGTGCCTTAAAAATGTTGTGGCCAAGCCACATGAGATCAAAGACACACTTTTCATGACCTCAAATGTGGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000546910.6
3UTR CAA 90 bp ACACGAAAGGACAATAAAGGGAGAAGGATGAAGGCCAGATGGAGATaGCATCAGTTAGATTTTGCTATACGAGAGATAACCAGAAAACTC +
Preference number: 2 (lower is better)
Translates to: TRKDNKGRRMKARWR*HQLDFAIREITRKL
Trigger: GAGTTTTCTGGTTATCTCTCGTATAGCAAAATCTAACTGATGCAATCTCCATCTGGCCTTCATCCTTCTCCCTTTATTGTCCTTTCGTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000546910.6
3UTR-3UTR GCA 90 bp TCTTCCCTTCTCAACGGTAGCACTTATCCTTTCCCAACACAGTCAGAGAACTTGGGATTCAAAAAGAGTTaGAAGTATAGTTCTTGTCAC +
Preference number: 2 (lower is better)
Translates to: SSLLNGSTYPFPTQSENLGFKKS*KYSSCH
Trigger: GTGACAAGAACTATACTTGCAACTCTTTTTGAATCC...CAAGTTCTCTGACTGTGTTGGGAAAGGATAAGTGCTACCGTTGAGAAGGGAAGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000546910.6
3UTR-3UTR GCA 90 bp CCTAGTAGTATGGTATACTCTGAGGCTAAAATAAAACAAACCCTGTCAACAGACTTGATCAGTCAGAAATaGTCAGTACTACAGAAGCGG +
Preference number: 2 (lower is better)
Translates to: PSSMVYSEAKIKQTLSTDLISQK*SVLQKR
Trigger: CCGCTTCTGTAGTACTGAGCATTTCTGACTGATCAA...GTCTGTTGACAGGGTTTGTTTTATTTTAGCCTCAGAGTATACCATACTACTAGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000418498.5
ENST00000546910.6
ENST00000551012.6
3UTR-3UTR CCA 90 bp CCTAGTAGTATGGTATACTCTGAGGCTAAAATAAAACAAACCCTGTCAACAGACGCCAGACGACCTGTATaGATTCAAAAAGAGTTGCAA +
Preference number: 2 (lower is better)
Translates to: PSSMVYSEAKIKQTLSTDARRPV*IQKELQ
Trigger: TTGCAACTCTTTTTGAATCCATACAGGTCGTCTGGC...GTCTGTTGACAGGGTTTGTTTTATTTTAGCCTCAGAGTATACCATACTACTAGG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000418498.5
ENST00000546910.6
ENST00000551012.6
3UTR GCA 72 bp CCTGCCCAGACCTCTCTCCATTCCCATAAACAATGCTaGTGTCCGTGCTGCTCCAAGCTCAGCACTAGGAGC +
Preference number: 3 (lower is better)
Translates to: PAQTSLHSHKQC*CPCCSKLSTRS
Trigger: GCTCCTAGTGCTGAGCTTGGAGCAGCACGGACAGCAGCATTGTTTATGGGAATGGAGAGAGGTCTGGGCAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000418498.5
ENST00000546910.6
ENST00000551012.6
3UTR GCA 72 bp TATCCTGCCCAGACCTCTCTCCATTCCCATAAACAATaGTGCTGTCCGTGCTGCTCCAAGCTCAGCACTAGG +
Preference number: 3 (lower is better)
Translates to: YPAQTSLHSHKQ*CCPCCSKLSTR
Trigger: CCTAGTGCTGAGCTTGGAGCAGCACGGACAGCAGCATTGTTTATGGGAATGGAGAGAGGTCTGGGCAGGATA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000418498.5
ENST00000546910.6
ENST00000551012.6
3UTR CCA 72 bp CTACCCTCGCTTGTGGAGTTAGGAGGGGCATGTGAATaGGGTTCCCTTGAGAACAGAGACGAAGTCACAGGA +
Preference number: 3 (lower is better)
Translates to: LPSLVELGGACE*GSLENRDEVTG
Trigger: TCCTGTGACTTCGTCTCTGTTCTCAAGGGAACCCCATTCACATGCCCCTCCTAACTCCACAAGCGAGGGTAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000418498.5
ENST00000546910.6
ENST00000551012.6
3UTR CCA 72 bp TCAGTGCCAGGCTCCTTGGGGTCAGTAGGCTGTGCCTaGTATCAGGCTTTCTCCAGAACTGAAGGGATGAAT +
Preference number: 3 (lower is better)
Translates to: SVPGSLGSVGCA*YQAFSRTEGMN
Trigger: ATTCATCCCTTCAGTTCTGGAGAAAGCCTGATACCAGGCACAGCCTACTGACCCCAAGGAGCCTGGCACTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000418498.5
ENST00000546910.6
3UTR TCA 72 bp GGATGGGGGTTGGCTGACCTAGGCTGGGCCCACATTTaGGGTCATGAAAAGTGTGTCTTTGATCTCATGTGG +
Preference number: 3 (lower is better)
Translates to: GWGLADLGWAHI*GHEKCVFDLMW
Trigger: CCACATGAGATCAAAGACACACTTTTCATGACCTCAAATGTGGGCCCAGCCTAGGTCAGCCAACCCCCATCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000546910.6
3UTR-3UTR CAA 90 bp TTCAAAGGGGTCTCCAAGAAGGTTCCTATCCTGCCCAGACCTCTCTCCATTCCCCCATTGAACACAGAGTaGTTGATCCAACGCCACCTT +
Preference number: 3 (lower is better)
Translates to: FKGVSKKVPILPRPLSIPPLNTE*LIQRHL
Trigger: AAGGTGGCGTTGGATCAACAACTCTGTGTTCAATGG...GGGAATGGAGAGAGGTCTGGGCAGGATAGGAACCTTCTTGGAGACCCCTTTGAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000418498.5
3UTR-3UTR CAA 90 bp CCTGATGTTCCCTTTTTACTATGTGCTTATTCCGTGCCCCCAGCCAATGTTTCCGTGAATGGGGTTCCCTaGAGAACAGAGACGAAGTCA +
Preference number: 3 (lower is better)
Translates to: PDVPFLLCAYSVPPANVSVNGVP*RTETKS
Trigger: TGACTTCGTCTCTGTTCTCAAGGGAACCCCATTCAC...GGAAACATTGGCTGGGGGCACGGAATAAGCACATAGTAAAAAGGGAACATCAGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000546910.6
3UTR TCA 72 bp GTGCTTAGAGTTTCAGCTGATCTAGGGTGGCTCTGCTaGTCTCAGGTGGATTTGTTCGTGAGTCTAAGGGTT +
Preference number: 3 (lower is better)
Translates to: VLRVSADLGWLC*SQVDLFVSLRV
Trigger: AACCCTTAGACTCACGAACAAATCCACCTGAGATCAGCAGAGCCACCCTAGATCAGCTGAAACTCTAAGCAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000546910.6
3UTR-3UTR CAA 90 bp GGCTGCCTGGTTTTCTTCAAAGGGGTCTCCAAGAAGGTTCCTATCCTGCCCAGATTGGTAACATTGCCATaGAACACAGAGTTGTTGATC +
Preference number: 3 (lower is better)
Translates to: GCLVFFKGVSKKVPILPRLVTLP*NTELLI
Trigger: GATCAACAACTCTGTGTTCAATGGCAATGTTACCAA...TCTGGGCAGGATAGGAACCTTCTTGGAGACCCCTTTGAAGAAAACCAGGCAGCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000418498.5
3UTR TCA 72 bp CTTATGCACCAAGCAGAGTATATAGCTGATGTCTTGTaGGTGTGGAGAACAGCCAGGGTACTCCAAGACTTG +
Preference number: 3 (lower is better)
Translates to: LMHQAEYIADVL*VWRTARVLQDL
Trigger: CAAGTCTTGGAGTACCCTGGCTGTTCTCCACACTCACAAGACATCAGCTATATACTCTGCTTGGTGCATAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000546910.6
3UTR TCA 72 bp TTTTCTCTTTCTTATGCACCAAGCAGAGTATATAGCTaGTGTCTTGTGAGTGTGGAGAACAGCCAGGGTACT +
Preference number: 3 (lower is better)
Translates to: FSLSYAPSRVYS*CLVSVENSQGT
Trigger: AGTACCCTGGCTGTTCTCCACACTCACAAGACATCAGCTATATACTCTGCTTGGTGCATAAGAAAGAGAAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000546910.6
3UTR-3UTR CAA 90 bp AGTGTGTCTTTGATCTCATGTGGCTTGGCCACAACATTTTTAAGGCACCCTTCTGGTATGTGCTGTACTTaGGTGACTATTATTTCCATC +
Preference number: 3 (lower is better)
Translates to: SVSLISCGLATTFLRHPSGMCCT*VTIISI
Trigger: GATGGAAATAATAGTCACCAAAGTACAGCACATACC...AGAAGGGTGCCTTAAAAATGTTGTGGCCAAGCCACATGAGATCAAAGACACACT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000546910.6
3UTR GCA 72 bp GATGAAGGCCAGATGGAGATTGCATCAGTTAGATTTTaGTATACGAGAGATAACCAGAAAACTCCAGTGGTA +
Preference number: 3 (lower is better)
Translates to: DEGQMEIASVRF*YTRDNQKTPVV
Trigger: TACCACTGGAGTTTTCTGGTTATCTCTCGTATAGCAAAATCTAACTGATGCAATCTCCATCTGGCCTTCATC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000546910.6
3UTR-3UTR CAA 90 bp ATCATTGGCCAGACGACCTGTATGGATTCAAAAAGAGTTGCAAGTATAGTTCTTTTGAACACAGAGTTGTaGATCCAACGCCACCTTTTC +
Preference number: 3 (lower is better)
Translates to: IIGQTTCMDSKRVASIVLLNTEL*IQRHLF
Trigger: GAAAAGGTGGCGTTGGATCAACAACTCTGTGTTCAA...AAGAACTATACTTGCAACTCTTTTTGAATCCATACAGGTCGTCTGGCCAATGAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000418498.5
3UTR-3UTR CAA 90 bp TATAATTTCTCACTCTACAGTTACTCCCTAGTAGTATGGTATACTCTGAGGCTACAGCATCAAATGTCTTaGTTAGGCCAATGGTCGCAC +
Preference number: 3 (lower is better)
Translates to: YNFSLYSYSLVVWYTLRLQHQMS*LGQWSH
Trigger: GTGCGACCATTGGCCTAACAAAGACATTTGATGCTG...TAGCCTCAGAGTATACCATACTACTAGGGAGTAACTGTAGAGTGAGAAATTATA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000418498.5
3UTR-3UTR CAA 90 bp CAGTTACTCCCTAGTAGTATGGTATACTCTGAGGCTAAAATAAAACAAACCCTGGGGAACTGTGATCATTaGGCATTCTTCTCACAGATC +
Preference number: 3 (lower is better)
Translates to: QLLPSSMVYSEAKIKQTLGNCDH*AFFSQI
Trigger: GATCTGTGAGAAGAATGCCAAATGATCACAGTTCCC...CAGGGTTTGTTTTATTTTAGCCTCAGAGTATACCATACTACTAGGGAGTAACTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000418498.5
3UTR TCA 72 bp ATGAAGTGGCTTGCCTACATTAAGCTTCTAGCAAATTaGAAAGCTACTTCTTGGATGAAGATCTCAACTTCA +
Preference number: 3 (lower is better)
Translates to: MKWLAYIKLLAN*KATSWMKISTS
Trigger: TGAAGTTGAGATCTTCATCCAAGAAGTAGCTTTTCAATTTGCTAGAAGCTTAATGTAGGCAAGCCACTTCAT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000546910.6
CDS-3UTR GCA 90 bp CCCATAAACAATGCTGCTGTCCGTGCTGCTCCAAGCTCAGCACTAGGAGCCCTCTGTGATGCCAATCAGTaGCAGGCTCCTTGGGGTCAG +
Preference number: 4 (lower is better)
Translates to: PINNAAVRAAPSSALGALCDANQ*QAPWGQ
Trigger: CTGACCCCAAGGAGCCTGGCACTGATTGGCATCACA...GAGGGCTCCTAGTGCTGAGCTTGGAGCAGCACGGACAGCAGCATTGTTTATGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000418498.5
ENST00000546910.6
CDS-3UTR CCA 90 bp AGCACTAGGAGCCCTCCCCAAGGCCAAGCCTTAGTTCAGACTGAGGAGAGCCTCGGAGGGGCATGTGAATaGGGTTCCCTTGAGAACAGA +
Preference number: 4 (lower is better)
Translates to: STRSPPQGQALVQTEESLGGACE*GSLENR
Trigger: TCTGTTCTCAAGGGAACCCCATTCACATGCCCCTCC...GAGGCTCTCCTCAGTCTGAACTAAGGCTTGGCCTTGGGGAGGGCTCCTAGTGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000418498.5
ENST00000546910.6
ENST00000551012.6
CDS-3UTR GCA 90 bp GGAGGGGCATGTGAATGGGGTTCCCTTGAGAACAGAGACGAAGTCACAGGACCTAAGGCTAGGCTTGCTTaGAGATGGGGGTCTTCCTGG +
Preference number: 4 (lower is better)
Translates to: GGACEWGSLENRDEVTGPKARLA*RWGSSW
Trigger: CCAGGAAGACCCCCATCTGCAAGCAAGCCTAGCCTT...AGGTCCTGTGACTTCGTCTCTGTTCTCAAGGGAACCCCATTCACATGCCCCTCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000418498.5
ENST00000546910.6
ENST00000551012.6
CDS-3UTR CCA 90 bp CCCATAAACAATGCTGCTGTCCGTGCTGCTCCAAGCTCAGCACTAGGAGCCCTCGGAGGGGCATGTGAATaGGGTTCCCTTGAGAACAGA +
Preference number: 4 (lower is better)
Translates to: PINNAAVRAAPSSALGALGGACE*GSLENR
Trigger: TCTGTTCTCAAGGGAACCCCATTCACATGCCCCTCC...GAGGGCTCCTAGTGCTGAGCTTGGAGCAGCACGGACAGCAGCATTGTTTATGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000418498.5
ENST00000546910.6
ENST00000551012.6
CDS-3UTR CCA 90 bp AGCACTAGGAGCCCTCCCCAAGGCCAAGCCTTAGTTCAGACTGAGGAGAGCCTCTCAGTAGGCTGTGCCTaGTATCAGGCTTTCTCCAGA +
Preference number: 4 (lower is better)
Translates to: STRSPPQGQALVQTEESLSVGCA*YQAFSR
Trigger: TCTGGAGAAAGCCTGATACCAGGCACAGCCTACTGA...GAGGCTCTCCTCAGTCTGAACTAAGGCTTGGCCTTGGGGAGGGCTCCTAGTGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000418498.5
ENST00000546910.6
CDS-3UTR GCA 90 bp GCCTGGTTTTCTTCAAAGGGGTCTCCAAGAAGGTTCCTATCCTGCCCAGACCTCACTGAGGAGAGCCTCTaGTACCCTCGCTTGTGGAGT +
Preference number: 4 (lower is better)
Translates to: AWFSSKGSPRRFLSCPDLTEESL*YPRLWS
Trigger: ACTCCACAAGCGAGGGTAGCAGAGGCTCTCCTCAGT...GAGGTCTGGGCAGGATAGGAACCTTCTTGGAGACCCCTTTGAAGAAAACCAGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000418498.5
ENST00000546910.6
ENST00000551012.6
CDS-3UTR GCA 90 bp CTGCTACCCTCGCTTGTGGAGTTAGGAGGGGCATGTGAATGGGGTTCCCTTGAGTCCCATAAACAATGCTaGTGTCCGTGCTGCTCCAAG +
Preference number: 4 (lower is better)
Translates to: LLPSLVELGGACEWGSLESHKQC*CPCCSK
Trigger: CTTGGAGCAGCACGGACAGCAGCATTGTTTATGGGA...CTCAAGGGAACCCCATTCACATGCCCCTCCTAACTCCACAAGCGAGGGTAGCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000418498.5
ENST00000546910.6
ENST00000551012.6
CDS-3UTR CCA 90 bp CTCCCTTGGCTGCCTGGTTTTCTTCAAAGGGGTCTCCAAGAAGGTTCCTATCCTTGGGGGTCTTCCTGGTaGCCTAATGCTTGGTGTGGC +
Preference number: 4 (lower is better)
Translates to: LPWLPGFLQRGLQEGSYPWGSSW*PNAWCG
Trigger: GCCACACCAAGCATTAGGCCACCAGGAAGACCCCCA...AGGATAGGAACCTTCTTGGAGACCCCTTTGAAGAAAACCAGGCAGCCAAGGGAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000418498.5
ENST00000546910.6
ENST00000551012.6
CDS-3UTR CCA 90 bp CTTGTGGAGTTAGGAGGGGCATGTGAATGGGGTTCCCTTGAGAACAGAGACGAACCCACCCCAGGCCATTaGGCTCCTTTTAGAACCTGC +
Preference number: 4 (lower is better)
Translates to: LVELGGACEWGSLENRDEPTPGH*APFRTC
Trigger: GCAGGTTCTAAAAGGAGCCCAATGGCCTGGGGTGGG...TTCGTCTCTGTTCTCAAGGGAACCCCATTCACATGCCCCTCCTAACTCCACAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENST00000546910.6
CDS-3UTR TCA 90 bp CCTCCCCAAGGCCAAGCCTTAGTTCAGACTGAGGAGAGCCTCTGCTACCCTCGCGTAGCTGATGTCACATaGTGCAGCATCAAATGTCTT +
Preference number: 4 (lower is better)
Translates to: PPQGQALVQTEESLCYPRVADVT*CSIKCL
Trigger: AAGACATTTGATGCTGCATCATGTGACATCAGCTAC...GCGAGGGTAGCAGAGGCTCTCCTCAGTCTGAACTAAGGCTTGGCCTTGGGGAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000418498.5
ENST00000546910.6
ENST00000551012.6
CDS-3UTR TCA 90 bp CTCCCTTGGCTGCCTGGTTTTCTTCAAAGGGGTCTCCAAGAAGGTTCCTATCCTAGCCTTAGTTCAGACTaGGGAGAGCCTCTGCTACCC +
Preference number: 4 (lower is better)
Translates to: LPWLPGFLQRGLQEGSYPSLSSD*GEPLLP
Trigger: GGGTAGCAGAGGCTCTCCTCAGTCTGAACTAAGGCT...AGGATAGGAACCTTCTTGGAGACCCCTTTGAAGAAAACCAGGCAGCCAAGGGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000418498.5
ENST00000546910.6
ENST00000551012.6
CDS-3UTR TCA 90 bp GGTTTTCTTCAAAGGGGTCTCCAAGAAGGTTCCTATCCTGCCCAGACCTCTCTCAGCCTTAGTTCAGACTaGGGAGAGCCTCTGCTACCC +
Preference number: 4 (lower is better)
Translates to: GFLQRGLQEGSYPAQTSLSLSSD*GEPLLP
Trigger: GGGTAGCAGAGGCTCTCCTCAGTCTGAACTAAGGCT...GAGAGAGGTCTGGGCAGGATAGGAACCTTCTTGGAGACCCCTTTGAAGAAAACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000418498.5
ENST00000546910.6
ENST00000551012.6
CDS-3UTR TCA 90 bp CTGGTTTTCTTCAAAGGGGTCTCCAAGAAGGTTCCTATCCTGCCCAGACCTCTCAGCCTTAGTTCAGACTaGGGAGAGCCTCTGCTACCC +
Preference number: 4 (lower is better)
Translates to: LVFFKGVSKKVPILPRPLSLSSD*GEPLLP
Trigger: GGGTAGCAGAGGCTCTCCTCAGTCTGAACTAAGGCT...GAGAGGTCTGGGCAGGATAGGAACCTTCTTGGAGACCCCTTTGAAGAAAACCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000418498.5
ENST00000546910.6
ENST00000551012.6
CDS-3UTR TCA 90 bp CCCATAAACAATGCTGCTGTCCGTGCTGCTCCAAGCTCAGCACTAGGAGCCCTCGTTTCTCTGGCGTGTTaGCAATTGCCAATGTGGATC +
Preference number: 4 (lower is better)
Translates to: PINNAAVRAAPSSALGALVSLAC*QLPMWI
Trigger: GATCCACATTGGCAATTGTCAACACGCCAGAGAAAC...GAGGGCTCCTAGTGCTGAGCTTGGAGCAGCACGGACAGCAGCATTGTTTATGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000546910.6
ENST00000551012.6
CDS-3UTR GCA 90 bp TGGCTCCCTTGGCTGCCTGGTTTTCTTCAAAGGGGTCTCCAAGAAGGTTCCTATAAGGCTAGGCTTGCTTaGAGATGGGGGTCTTCCTGG +
Preference number: 4 (lower is better)
Translates to: WLPWLPGFLQRGLQEGSYKARLA*RWGSSW
Trigger: CCAGGAAGACCCCCATCTGCAAGCAAGCCTAGCCTT...ATAGGAACCTTCTTGGAGACCCCTTTGAAGAAAACCAGGCAGCCAAGGGAGCCA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000418498.5
ENST00000546910.6
ENST00000551012.6
CDS-3UTR GCA 90 bp CTGGTTTTCTTCAAAGGGGTCTCCAAGAAGGTTCCTATCCTGCCCAGACCTCTCCAATGCTGCTGTCCGTaGTGCTCCAAGCTCAGCACT +
Preference number: 4 (lower is better)
Translates to: LVFFKGVSKKVPILPRPLQCCCP*CSKLST
Trigger: AGTGCTGAGCTTGGAGCAGCACGGACAGCAGCATTG...GAGAGGTCTGGGCAGGATAGGAACCTTCTTGGAGACCCCTTTGAAGAAAACCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000418498.5
ENST00000546910.6
ENST00000551012.6
CDS-3UTR GCA 90 bp GGAGGGGCATGTGAATGGGGTTCCCTTGAGAACAGAGACGAAGTCACAGGACCTTCCCATAAACAATGCTaGTGTCCGTGCTGCTCCAAG +
Preference number: 4 (lower is better)
Translates to: GGACEWGSLENRDEVTGPSHKQC*CPCCSK
Trigger: CTTGGAGCAGCACGGACAGCAGCATTGTTTATGGGA...AGGTCCTGTGACTTCGTCTCTGTTCTCAAGGGAACCCCATTCACATGCCCCTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000418498.5
ENST00000546910.6
ENST00000551012.6
CDS-3UTR GCA 90 bp GGAGGGGCATGTGAATGGGGTTCCCTTGAGAACAGAGACGAAGTCACAGGACCTCATTCCCATAAACAATaGTGCTGTCCGTGCTGCTCC +
Preference number: 4 (lower is better)
Translates to: GGACEWGSLENRDEVTGPHSHKQ*CCPCCS
Trigger: GGAGCAGCACGGACAGCAGCATTGTTTATGGGAATG...AGGTCCTGTGACTTCGTCTCTGTTCTCAAGGGAACCCCATTCACATGCCCCTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000418498.5
ENST00000546910.6
ENST00000551012.6
CDS-3UTR GCA 90 bp CCCATAAACAATGCTGCTGTCCGTGCTGCTCCAAGCTCAGCACTAGGAGCCCTCTGTCTTCCTCTTTCTTaGCTTTCTTCCAGTGTGGCC +
Preference number: 4 (lower is better)
Translates to: PINNAAVRAAPSSALGALCLPLS*LSSSVA
Trigger: GGCCACACTGGAAGAAAGGCAAGAAAGAGGAAGACA...GAGGGCTCCTAGTGCTGAGCTTGGAGCAGCACGGACAGCAGCATTGTTTATGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000546910.6
CDS-3UTR CCA 90 bp GCCTGGTTTTCTTCAAAGGGGTCTCCAAGAAGGTTCCTATCCTGCCCAGACCTCGGAGGGGCATGTGAATaGGGTTCCCTTGAGAACAGA +
Preference number: 4 (lower is better)
Translates to: AWFSSKGSPRRFLSCPDLGGACE*GSLENR
Trigger: TCTGTTCTCAAGGGAACCCCATTCACATGCCCCTCC...GAGGTCTGGGCAGGATAGGAACCTTCTTGGAGACCCCTTTGAAGAAAACCAGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000418498.5
ENST00000546910.6
ENST00000551012.6
CDS-3UTR CCA 90 bp GGCTGCCTGGTTTTCTTCAAAGGGGTCTCCAAGAAGGTTCCTATCCTGCCCAGAGCTCCCTTGGCTGCCTaGTTTTCTTCAAAGGGGTCT +
Preference number: 4 (lower is better)
Translates to: GCLVFFKGVSKKVPILPRAPLAA*FSSKGS
Trigger: AGACCCCTTTGAAGAAAACCAGGCAGCCAAGGGAGC...TCTGGGCAGGATAGGAACCTTCTTGGAGACCCCTTTGAAGAAAACCAGGCAGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENST00000418498.5
ENST00000546910.6
ENST00000551012.6
CDS-3UTR CCA 90 bp AGCACTAGGAGCCCTCCCCAAGGCCAAGCCTTAGTTCAGACTGAGGAGAGCCTCAAAATTCCCAGTCTTTaGGGCAGACTGTTCCATAGC +
Preference number: 4 (lower is better)
Translates to: STRSPPQGQALVQTEESLKIPSL*GRLFHS
Trigger: GCTATGGAACAGTCTGCCCCAAAGACTGGGAATTTT...GAGGCTCTCCTCAGTCTGAACTAAGGCTTGGCCTTGGGGAGGGCTCCTAGTGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000546910.6
ENST00000551012.6
CDS-3UTR GCA 90 bp AGCACTAGGAGCCCTCCCCAAGGCCAAGCCTTAGTTCAGACTGAGGAGAGCCTCGCTCCTTTTAGAACCTaGACAGAAGTGTCTCCTAAT +
Preference number: 4 (lower is better)
Translates to: STRSPPQGQALVQTEESLAPFRT*TEVSPN
Trigger: ATTAGGAGACACTTCTGTGCAGGTTCTAAAAGGAGC...GAGGCTCTCCTCAGTCTGAACTAAGGCTTGGCCTTGGGGAGGGCTCCTAGTGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000546910.6
CDS-3UTR CCA 90 bp TCCCTTGGCTGCCTGGTTTTCTTCAAAGGGGTCTCCAAGAAGGTTCCTATCCTGGCTCCCTTGGCTGCCTaGTTTTCTTCAAAGGGGTCT +
Preference number: 4 (lower is better)
Translates to: SLGCLVFFKGVSKKVPILAPLAA*FSSKGS
Trigger: AGACCCCTTTGAAGAAAACCAGGCAGCCAAGGGAGC...CAGGATAGGAACCTTCTTGGAGACCCCTTTGAAGAAAACCAGGCAGCCAAGGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENST00000418498.5
ENST00000546910.6
ENST00000551012.6
CDS-3UTR CCA 90 bp AGCACTAGGAGCCCTCCCCAAGGCCAAGCCTTAGTTCAGACTGAGGAGAGCCTCAGGATGAAGGCCAGATaGAGATTGCATCAGTTAGAT +
Preference number: 4 (lower is better)
Translates to: STRSPPQGQALVQTEESLRMKAR*RLHQLD
Trigger: ATCTAACTGATGCAATCTCCATCTGGCCTTCATCCT...GAGGCTCTCCTCAGTCTGAACTAAGGCTTGGCCTTGGGGAGGGCTCCTAGTGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000546910.6
CDS-3UTR TCA 90 bp CCCATAAACAATGCTGCTGTCCGTGCTGCTCCAAGCTCAGCACTAGGAGCCCTCGTAGCTGATGTCACATaGTGCAGCATCAAATGTCTT +
Preference number: 4 (lower is better)
Translates to: PINNAAVRAAPSSALGALVADVT*CSIKCL
Trigger: AAGACATTTGATGCTGCATCATGTGACATCAGCTAC...GAGGGCTCCTAGTGCTGAGCTTGGAGCAGCACGGACAGCAGCATTGTTTATGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000418498.5
ENST00000546910.6
ENST00000551012.6
CDS-3UTR TCA 90 bp CCCATAAACAATGCTGCTGTCCGTGCTGCTCCAAGCTCAGCACTAGGAGCCCTCGGCTTTCTCCAGAACTaGAGGGATGAATATATTGTG +
Preference number: 4 (lower is better)
Translates to: PINNAAVRAAPSSALGALGFLQN*RDEYIV
Trigger: CACAATATATTCATCCCTTCAGTTCTGGAGAAAGCC...GAGGGCTCCTAGTGCTGAGCTTGGAGCAGCACGGACAGCAGCATTGTTTATGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000418498.5
ENST00000546910.6
CDS-3UTR GCA 90 bp GTTTTCTTCAAAGGGGTCTCCAAGAAGGTTCCTATCCTGCCCAGACCTCTCTCCCTTCTTCACAGTCTCTaGCTTGGTAGCATCCCCAAG +
Preference number: 4 (lower is better)
Translates to: VFFKGVSKKVPILPRPLSLLHSL*LGSIPK
Trigger: CTTGGGGATGCTACCAAGGCAGAGACTGTGAAGAAG...GGAGAGAGGTCTGGGCAGGATAGGAACCTTCTTGGAGACCCCTTTGAAGAAAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000418498.5
ENST00000546910.6
CDS-3UTR GCA 90 bp CCCATAAACAATGCTGCTGTCCGTGCTGCTCCAAGCTCAGCACTAGGAGCCCTCTTGATCAGTCAGAAATaGTCAGTACTACAGAAGCGG +
Preference number: 4 (lower is better)
Translates to: PINNAAVRAAPSSALGALLISQK*SVLQKR
Trigger: CCGCTTCTGTAGTACTGAGCATTTCTGACTGATCAA...GAGGGCTCCTAGTGCTGAGCTTGGAGCAGCACGGACAGCAGCATTGTTTATGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000418498.5
ENST00000546910.6
ENST00000551012.6
CDS-3UTR GCA 90 bp CCTGGTTTTCTTCAAAGGGGTCTCCAAGAAGGTTCCTATCCTGCCCAGACCTCTCATTCCCATAAACAATaGTGCTGTCCGTGCTGCTCC +
Preference number: 4 (lower is better)
Translates to: PGFLQRGLQEGSYPAQTSHSHKQ*CCPCCS
Trigger: GGAGCAGCACGGACAGCAGCATTGTTTATGGGAATG...AGAGGTCTGGGCAGGATAGGAACCTTCTTGGAGACCCCTTTGAAGAAAACCAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000418498.5
ENST00000546910.6
ENST00000551012.6
CDS-3UTR GCA 90 bp CTTGTGGAGTTAGGAGGGGCATGTGAATGGGGTTCCCTTGAGAACAGAGACGAACATTCCCATAAACAATaGTGCTGTCCGTGCTGCTCC +
Preference number: 4 (lower is better)
Translates to: LVELGGACEWGSLENRDEHSHKQ*CCPCCS
Trigger: GGAGCAGCACGGACAGCAGCATTGTTTATGGGAATG...TTCGTCTCTGTTCTCAAGGGAACCCCATTCACATGCCCCTCCTAACTCCACAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000418498.5
ENST00000546910.6
ENST00000551012.6
CDS-3UTR GCA 90 bp CTCCCTTGGCTGCCTGGTTTTCTTCAAAGGGGTCTCCAAGAAGGTTCCTATCCTCTGAGTTCTGGGGCTTaGCTTTGGCTAGAGTTCTGT +
Preference number: 4 (lower is better)
Translates to: LPWLPGFLQRGLQEGSYPLSSGA*LWLEFC
Trigger: ACAGAACTCTAGCCAAAGGCAAGCCCCAGAACTCAG...AGGATAGGAACCTTCTTGGAGACCCCTTTGAAGAAAACCAGGCAGCCAAGGGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000546910.6
CDS-3UTR CCA 90 bp CTCCCTTGGCTGCCTGGTTTTCTTCAAAGGGGTCTCCAAGAAGGTTCCTATCCTTCAGTAGGCTGTGCCTaGTATCAGGCTTTCTCCAGA +
Preference number: 4 (lower is better)
Translates to: LPWLPGFLQRGLQEGSYPSVGCA*YQAFSR
Trigger: TCTGGAGAAAGCCTGATACCAGGCACAGCCTACTGA...AGGATAGGAACCTTCTTGGAGACCCCTTTGAAGAAAACCAGGCAGCCAAGGGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000418498.5
ENST00000546910.6
CDS-3UTR CCA 90 bp TTCAAAGGGGTCTCCAAGAAGGTTCCTATCCTGCCCAGACCTCTCTCCATTCCCGCCTTTCTTCCAGTGTaGCCAAATGAACTCCCTGTT +
Preference number: 4 (lower is better)
Translates to: FKGVSKKVPILPRPLSIPAFLPV*PNELPV
Trigger: AACAGGGAGTTCATTTGGCCACACTGGAAGAAAGGC...GGGAATGGAGAGAGGTCTGGGCAGGATAGGAACCTTCTTGGAGACCCCTTTGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000546910.6
CDS-3UTR TCA 90 bp GGTTTTCTTCAAAGGGGTCTCCAAGAAGGTTCCTATCCTGCCCAGACCTCTCTCAGCTCCTGGTGGTGGTaGAACCATCGTTACTTTTGT +
Preference number: 4 (lower is better)
Translates to: GFLQRGLQEGSYPAQTSLSSWWW*NHRYFC
Trigger: ACAAAAGTAACGATGGTTTCACCACCACCAGGAGCT...GAGAGAGGTCTGGGCAGGATAGGAACCTTCTTGGAGACCCCTTTGAAGAAAACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000418498.5
ENST00000546910.6
ENST00000551012.6
CDS-3UTR TCA 90 bp GGAGGGGCATGTGAATGGGGTTCCCTTGAGAACAGAGACGAAGTCACAGGACCTGTAGCTGATGTCACATaGTGCAGCATCAAATGTCTT +
Preference number: 4 (lower is better)
Translates to: GGACEWGSLENRDEVTGPVADVT*CSIKCL
Trigger: AAGACATTTGATGCTGCATCATGTGACATCAGCTAC...AGGTCCTGTGACTTCGTCTCTGTTCTCAAGGGAACCCCATTCACATGCCCCTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000418498.5
ENST00000546910.6
ENST00000551012.6
CDS-3UTR TCA 90 bp GCCTGGTTTTCTTCAAAGGGGTCTCCAAGAAGGTTCCTATCCTGCCCAGACCTCTGTCACAGGGAACTGTaGTCATTTGGCATTCTTCTC +
Preference number: 4 (lower is better)
Translates to: AWFSSKGSPRRFLSCPDLCHREL*SFGILL
Trigger: GAGAAGAATGCCAAATGATCACAGTTCCCTGTGACA...GAGGTCTGGGCAGGATAGGAACCTTCTTGGAGACCCCTTTGAAGAAAACCAGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000418498.5
ENST00000546910.6
ENST00000551012.6
CDS-3UTR GCA 90 bp TTTTCTTCAAAGGGGTCTCCAAGAAGGTTCCTATCCTGCCCAGACCTCTCTCCATCCCATAAACAATGCTaGTGTCCGTGCTGCTCCAAG +
Preference number: 4 (lower is better)
Translates to: FSSKGSPRRFLSCPDLSPSHKQC*CPCCSK
Trigger: CTTGGAGCAGCACGGACAGCAGCATTGTTTATGGGA...TGGAGAGAGGTCTGGGCAGGATAGGAACCTTCTTGGAGACCCCTTTGAAGAAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000418498.5
ENST00000546910.6
ENST00000551012.6
CDS-3UTR GCA 90 bp CTTGTGGAGTTAGGAGGGGCATGTGAATGGGGTTCCCTTGAGAACAGAGACGAATGGGACTTGGGGAACTaGTCCCAAAAATCTGTGAGA +
Preference number: 4 (lower is better)
Translates to: LVELGGACEWGSLENRDEWDLGN*SQKSVR
Trigger: TCTCACAGATTTTTGGGAGCAGTTCCCCAAGTCCCA...TTCGTCTCTGTTCTCAAGGGAACCCCATTCACATGCCCCTCCTAACTCCACAAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENST00000546910.6
CDS-3UTR TCA 90 bp TTTTCTTCAAAGGGGTCTCCAAGAAGGTTCCTATCCTGCCCAGACCTCTCTCCAAGTTCTAGATCAATGTaGTGCCAATCAGTGCCAGGC +
Preference number: 4 (lower is better)
Translates to: FSSKGSPRRFLSCPDLSPSSRSM*CQSVPG
Trigger: GCCTGGCACTGATTGGCATCACATTGATCTAGAACT...TGGAGAGAGGTCTGGGCAGGATAGGAACCTTCTTGGAGACCCCTTTGAAGAAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000418498.5
ENST00000546910.6
CDS-3UTR TCA 90 bp GGTTTTCTTCAAAGGGGTCTCCAAGAAGGTTCCTATCCTGCCCAGACCTCTCTCGTTTCCTGTCTCAGGTaGTTTCCATTTGACCCTGAT +
Preference number: 4 (lower is better)
Translates to: GFLQRGLQEGSYPAQTSLVSCLR*FPFDPD
Trigger: ATCAGGGTCAAATGGAAATCACCTGAGACAGGAAAC...GAGAGAGGTCTGGGCAGGATAGGAACCTTCTTGGAGACCCCTTTGAAGAAAACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000546910.6
CDS-3UTR TCA 90 bp CTGGTTTTCTTCAAAGGGGTCTCCAAGAAGGTTCCTATCCTGCCCAGACCTCTCCCTTCAAGCAAGTTCTaGCACCTGATGTGTTATCTC +
Preference number: 4 (lower is better)
Translates to: LVFFKGVSKKVPILPRPLPSSKF*HLMCYL
Trigger: GAGATAACACATCAGGTGTCAGAACTTGCTTGAAGG...GAGAGGTCTGGGCAGGATAGGAACCTTCTTGGAGACCCCTTTGAAGAAAACCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000546910.6
CDS-3UTR TCA 90 bp TCCAAGCTCAGCACTAGGAGCCCTCCCCAAGGCCAAGCCTTAGTTCAGACTGAGAAGCTACTTCTTGGATaGAGATCTCAACTTCAAATC +
Preference number: 4 (lower is better)
Translates to: SKLSTRSPPQGQALVQTEKLLLG*RSQLQI
Trigger: GATTTGAAGTTGAGATCTTCATCCAAGAAGTAGCTT...CTCAGTCTGAACTAAGGCTTGGCCTTGGGGAGGGCTCCTAGTGCTGAGCTTGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000546910.6
CDS-3UTR TCA 90 bp CTGCTACCCTCGCTTGTGGAGTTAGGAGGGGCATGTGAATGGGGTTCCCTTGAGACAAGTTCTGAAAAATaGAGTGGCTTGCCTACATTA +
Preference number: 4 (lower is better)
Translates to: LLPSLVELGGACEWGSLETSSEK*SGLPTL
Trigger: TAATGTAGGCAAGCCACTTCATTTTTCAGAACTTGT...CTCAAGGGAACCCCATTCACATGCCCCTCCTAACTCCACAAGCGAGGGTAGCAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000546910.6
CDS-3UTR GCA 90 bp GTTTTCTTCAAAGGGGTCTCCAAGAAGGTTCCTATCCTGCCCAGACCTCTCTCCCCAGAGATGATCATGTaGCAGTTCATGATGAAGGAG +
Preference number: 4 (lower is better)
Translates to: VFFKGVSKKVPILPRPLSPEMIM*QFMMKE
Trigger: CTCCTTCATCATGAACTGGCACATGATCATCTCTGG...GGAGAGAGGTCTGGGCAGGATAGGAACCTTCTTGGAGACCCCTTTGAAGAAAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000418498.5
ENST00000546910.6
ENST00000551012.6
CDS-3UTR GCA 90 bp AGCACTAGGAGCCCTCCCCAAGGCCAAGCCTTAGTTCAGACTGAGGAGAGCCTCGGATTCAAAAAGAGTTaGAAGTATAGTTCTTGTCAC +
Preference number: 4 (lower is better)
Translates to: STRSPPQGQALVQTEESLGFKKS*KYSSCH
Trigger: GTGACAAGAACTATACTTGCAACTCTTTTTGAATCC...GAGGCTCTCCTCAGTCTGAACTAAGGCTTGGCCTTGGGGAGGGCTCCTAGTGCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000418498.5
ENST00000546910.6
ENST00000551012.6
CDS-3UTR CCA 90 bp CAGACGACCTGTATGGATTCAAAAAGAGTTGCAAGTATAGTTCTTGTCACAGGGGGGCCTCTTTCTCCCTaGAAGGCTAGGCTTGCTTGC +
Preference number: 4 (lower is better)
Translates to: QTTCMDSKRVASIVLVTGGPLSP*KARLAC
Trigger: GCAAGCAAGCCTAGCCTTCCAGGGAGAAAGAGGCCC...CCCTGTGACAAGAACTATACTTGCAACTCTTTTTGAATCCATACAGGTCGTCTG
49% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt.
Matches the following 3 transcripts:
ENST00000418498.5
ENST00000546910.6
ENST00000551012.6
CDS-3UTR CCA 90 bp GGCCAGACGACCTGTATGGATTCAAAAAGAGTTGCAAGTATAGTTCTTGTCACAGGGCCTCTTTCTCCCTaGAAGGCTAGGCTTGCTTGC +
Preference number: 4 (lower is better)
Translates to: GQTTCMDSKRVASIVLVTGPLSP*KARLAC
Trigger: GCAAGCAAGCCTAGCCTTCCAGGGAGAAAGAGGCCC...TGTGACAAGAACTATACTTGCAACTCTTTTTGAATCCATACAGGTCGTCTGGCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000418498.5
ENST00000546910.6
ENST00000551012.6
CDS-3UTR CCA 90 bp CCCATAAACAATGCTGCTGTCCGTGCTGCTCCAAGCTCAGCACTAGGAGCCCTCTTAACAAGATCATCCTaGTTGCTGGATGAACAATAC +
Preference number: 4 (lower is better)
Translates to: PINNAAVRAAPSSALGALLTRSS*LLDEQY
Trigger: GTATTGTTCATCCAGCAACCAGGATGATCTTGTTAA...GAGGGCTCCTAGTGCTGAGCTTGGAGCAGCACGGACAGCAGCATTGTTTATGGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000546910.6
3UTR CAA 72 bp TTCAGGGCTTTGCTGAAGAACAGAAATCTAGTGTGTTaGGCTCCCTTGGCTGCCTGGTTTTCTTCAAAGGGG +
Preference number: 4 (lower is better)
Translates to: FRALLKNRNLVC*APLAAWFSSKG
Trigger: CCCCTTTGAAGAAAACCAGGCAGCCAAGGGAGCCAAACACACTAGATTTCTGTTCTTCAGCAAAGCCCTGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000418498.5
ENST00000546910.6
ENST00000551012.6
CDS-3UTR GCA 90 bp TCCATTCCCATAAACAATGCTGCTGTCCGTGCTGCTCCAAGCTCAGCACTAGGAAGAATATGCTCCTTTTaGCCAAGCAACGTTCTTCCT +
Preference number: 4 (lower is better)
Translates to: SIPINNAAVRAAPSSALGRICSF*PSNVLP
Trigger: AGGAAGAACGTTGCTTGGGCAAAAGGAGCATATTCT...TCCTAGTGCTGAGCTTGGAGCAGCACGGACAGCAGCATTGTTTATGGGAATGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000418498.5
ENST00000546910.6
ENST00000551012.6
CDS-3UTR GCA 90 bp CTTGTGGAGTTAGGAGGGGCATGTGAATGGGGTTCCCTTGAGAACAGAGACGAAAGAATATGCTCCTTTTaGCCAAGCAACGTTCTTCCT +
Preference number: 4 (lower is better)
Translates to: LVELGGACEWGSLENRDERICSF*PSNVLP
Trigger: AGGAAGAACGTTGCTTGGGCAAAAGGAGCATATTCT...TTCGTCTCTGTTCTCAAGGGAACCCCATTCACATGCCCCTCCTAACTCCACAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000418498.5
ENST00000546910.6
ENST00000551012.6
CDS-3UTR GCA 90 bp TTTTCTTCAAAGGGGTCTCCAAGAAGGTTCCTATCCTGCCCAGACCTCTCTCCACCAGAGATGATCATGTaGCAGTTCATGATGAAGGAG +
Preference number: 4 (lower is better)
Translates to: FSSKGSPRRFLSCPDLSPPEMIM*QFMMKE
Trigger: CTCCTTCATCATGAACTGGCACATGATCATCTCTGG...TGGAGAGAGGTCTGGGCAGGATAGGAACCTTCTTGGAGACCCCTTTGAAGAAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000418498.5
ENST00000546910.6
ENST00000551012.6
CDS-3UTR GCA 90 bp CAAGGCCAAGCCTTAGTTCAGACTGAGGAGAGCCTCTGCTACCCTCGCTTGTGGGGATTCAAAAAGAGTTaGAAGTATAGTTCTTGTCAC +
Preference number: 4 (lower is better)
Translates to: QGQALVQTEESLCYPRLWGFKKS*KYSSCH
Trigger: GTGACAAGAACTATACTTGCAACTCTTTTTGAATCC...CCACAAGCGAGGGTAGCAGAGGCTCTCCTCAGTCTGAACTAAGGCTTGGCCTTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000418498.5
ENST00000546910.6
ENST00000551012.6
CDS-3UTR GCA 90 bp TCCATTCCCATAAACAATGCTGCTGTCCGTGCTGCTCCAAGCTCAGCACTAGGATTGATCAGTCAGAAATaGTCAGTACTACAGAAGCGG +
Preference number: 4 (lower is better)
Translates to: SIPINNAAVRAAPSSALGLISQK*SVLQKR
Trigger: CCGCTTCTGTAGTACTGAGCATTTCTGACTGATCAA...TCCTAGTGCTGAGCTTGGAGCAGCACGGACAGCAGCATTGTTTATGGGAATGGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000418498.5
ENST00000546910.6
ENST00000551012.6
CDS-3UTR GCA 90 bp TGGCCAGACGACCTGTATGGATTCAAAAAGAGTTGCAAGTATAGTTCTTGTCACACTGAGGAGAGCCTCTaGTACCCTCGCTTGTGGAGT +
Preference number: 4 (lower is better)
Translates to: WPDDLYGFKKSCKYSSCHTEESL*YPRLWS
Trigger: ACTCCACAAGCGAGGGTAGCAGAGGCTCTCCTCAGT...GTGACAAGAACTATACTTGCAACTCTTTTTGAATCCATACAGGTCGTCTGGCCA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000418498.5
ENST00000546910.6
ENST00000551012.6
CDS-3UTR GCA 90 bp TGGCCAGACGACCTGTATGGATTCAAAAAGAGTTGCAAGTATAGTTCTTGTCACGGGGTCAGTAGGCTGTaGCTGGTATCAGGCTTTCTC +
Preference number: 4 (lower is better)
Translates to: WPDDLYGFKKSCKYSSCHGVSRL*LVSGFL
Trigger: GAGAAAGCCTGATACCAGGCACAGCCTACTGACCCC...GTGACAAGAACTATACTTGCAACTCTTTTTGAATCCATACAGGTCGTCTGGCCA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000418498.5
ENST00000546910.6
CDS-3UTR GCA 90 bp ATTGGTAACATTGCCATTGAACACAGAGTTGTTGATCCAACGCCACCTTTTCTCTGTGATGCCAATCAGTaGCAGGCTCCTTGGGGTCAG +
Preference number: 4 (lower is better)
Translates to: IGNIAIEHRVVDPTPPFLCDANQ*QAPWGQ
Trigger: CTGACCCCAAGGAGCCTGGCACTGATTGGCATCACA...GAGAAAAGGTGGCGTTGGATCAACAACTCTGTGTTCAATGGCAATGTTACCAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000418498.5
CDS-3UTR CCA 90 bp GACGACCTGTATGGATTCAAAAAGAGTTGCAAGTATAGTTCTTGTCACAGGGAATGGGGGTCTTCCTGGTaGCCTAATGCTTGGTGTGGC +
Preference number: 4 (lower is better)
Translates to: DDLYGFKKSCKYSSCHREWGSSW*PNAWCG
Trigger: GCCACACCAAGCATTAGGCCACCAGGAAGACCCCCA...TTCCCTGTGACAAGAACTATACTTGCAACTCTTTTTGAATCCATACAGGTCGTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENST00000418498.5
ENST00000439991.1
ENST00000546910.6
ENST00000551012.6
CDS-3UTR CCA 90 bp CTCCCTTGGCTGCCTGGTTTTCTTCAAAGGGGTCTCCAAGAAGGTTCCTATCCTGCCAGACGACCTGTATaGATTCAAAAAGAGTTGCAA +
Preference number: 4 (lower is better)
Translates to: LPWLPGFLQRGLQEGSYPARRPV*IQKELQ
Trigger: TTGCAACTCTTTTTGAATCCATACAGGTCGTCTGGC...AGGATAGGAACCTTCTTGGAGACCCCTTTGAAGAAAACCAGGCAGCCAAGGGAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000418498.5
ENST00000546910.6
ENST00000551012.6
CDS-3UTR TCA 90 bp TCTTCCCTTCTCAACGGTAGCACTTATCCTTTCCCAACACAGTCAGAGAACTTGTTCCTTTCTGTTGTCTaGGTTCTGGGGCTTGCCTTT +
Preference number: 4 (lower is better)
Translates to: SSLLNGSTYPFPTQSENLFLSVV*VLGLAF
Trigger: AAAGGCAAGCCCCAGAACTCAGACAACAGAAAGGAA...CAAGTTCTCTGACTGTGTTGGGAAAGGATAAGTGCTACCGTTGAGAAGGGAAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000546910.6
CDS-3UTR GCA 90 bp GACGACCTGTATGGATTCAAAAAGAGTTGCAAGTATAGTTCTTGTCACAGGGAACAATGCTGCTGTCCGTaGTGCTCCAAGCTCAGCACT +
Preference number: 4 (lower is better)
Translates to: DDLYGFKKSCKYSSCHREQCCCP*CSKLST
Trigger: AGTGCTGAGCTTGGAGCAGCACGGACAGCAGCATTG...TTCCCTGTGACAAGAACTATACTTGCAACTCTTTTTGAATCCATACAGGTCGTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000418498.5
ENST00000546910.6
ENST00000551012.6
CDS-3UTR GCA 90 bp AACATTGCCATTGAACACAGAGTTGTTGATCCAACGCCACCTTTTCTCTTCACGAGAAGGTTCCTATCCTaGCCAGACCTCTCTCCATTC +
Preference number: 4 (lower is better)
Translates to: NIAIEHRVVDPTPPFLFTRRFLS*PDLSPF
Trigger: GAATGGAGAGAGGTCTGGGCAGGATAGGAACCTTCT...CGTGAAGAGAAAAGGTGGCGTTGGATCAACAACTCTGTGTTCAATGGCAATGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000418498.5
CDS-3UTR GCA 90 bp CATTCCCATAAACAATGCTGCTGTCCGTGCTGCTCCAAGCTCAGCACTAGGAGCCACCCTTCTCTGACTTaGACAAATTTTTATTCCCAT +
Preference number: 4 (lower is better)
Translates to: HSHKQCCCPCCSKLSTRSHPSLT*TNFYSH
Trigger: ATGGGAATAAAAATTTGTGCAAGTCAGAGAAGGGTG...GCTCCTAGTGCTGAGCTTGGAGCAGCACGGACAGCAGCATTGTTTATGGGAATG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000546910.6
CDS-3UTR CCA 90 bp CAGTTACTCCCTAGTAGTATGGTATACTCTGAGGCTAAAATAAAACAAACCCTGTGGGGGTCTTCCTGGTaGCCTAATGCTTGGTGTGGC +
Preference number: 4 (lower is better)
Translates to: QLLPSSMVYSEAKIKQTLWGSSW*PNAWCG
Trigger: GCCACACCAAGCATTAGGCCACCAGGAAGACCCCCA...CAGGGTTTGTTTTATTTTAGCCTCAGAGTATACCATACTACTAGGGAGTAACTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000418498.5
ENST00000546910.6
ENST00000551012.6
CDS-3UTR CCA 90 bp CAGACGACCTGTATGGATTCAAAAAGAGTTGCAAGTATAGTTCTTGTCACAGGGAGATGGGGGTCTTCCTaGTGGCCTAATGCTTGGTGT +
Preference number: 4 (lower is better)
Translates to: QTTCMDSKRVASIVLVTGRWGSS*WPNAWC
Trigger: ACACCAAGCATTAGGCCACCAGGAAGACCCCCATCT...CCCTGTGACAAGAACTATACTTGCAACTCTTTTTGAATCCATACAGGTCGTCTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENST00000418498.5
ENST00000439991.1
ENST00000546910.6
ENST00000551012.6
CDS-3UTR CCA 90 bp CATTGGCCAGACGACCTGTATGGATTCAAAAAGAGTTGCAAGTATAGTTCTTGTGGGACTCTTTCTCCCTaGAAGGCTAGGCTTGCTTGC +
Preference number: 4 (lower is better)
Translates to: HWPDDLYGFKKSCKYSSCGTLSP*KARLAC
Trigger: GCAAGCAAGCCTAGCCTTCCAGGGAGAAAGAGTCCC...ACAAGAACTATACTTGCAACTCTTTTTGAATCCATACAGGTCGTCTGGCCAATG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000439991.1
CDS-3UTR CCA 90 bp AGTGTGTCTTTGATCTCATGTGGCTTGGCCACAACATTTTTAAGGCACCCTTCTCTGTTGTCTGAGTTCTaGGGCTTGCCTTTGGCTAGA +
Preference number: 4 (lower is better)
Translates to: SVSLISCGLATTFLRHPSLLSEF*GLPLAR
Trigger: TCTAGCCAAAGGCAAGCCCCAGAACTCAGACAACAG...AGAAGGGTGCCTTAAAAATGTTGTGGCCAAGCCACATGAGATCAAAGACACACT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000546910.6
CDS-3UTR CCA 90 bp TTTTCTTCAAAGGGGTCTCCAAGAAGGTTCCTATCCTGCCCAGACCTCTCTCCAGATCATCCTGGTTGCTaGATGAACAATACACGAAAG +
Preference number: 4 (lower is better)
Translates to: FSSKGSPRRFLSCPDLSPDHPGC*MNNTRK
Trigger: CTTTCGTGTATTGTTCATCCAGCAACCAGGATGATC...TGGAGAGAGGTCTGGGCAGGATAGGAACCTTCTTGGAGACCCCTTTGAAGAAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000546910.6
CDS-3UTR TCA 90 bp GTGAATGGGGTTCCCTTGAGAACAGAGACGAAGTCACAGGACCTATGTTTATCCCAATGGTCGCACAGTTaGAATTCTGATTCTGATTGG +
Preference number: 4 (lower is better)
Translates to: VNGVPLRTETKSQDLCLSQWSHS*NSDSDW
Trigger: CCAATCAGAATCAGAATTTCAACTGTGCGACCATTG...GGATAAACATAGGTCCTGTGACTTCGTCTCTGTTCTCAAGGGAACCCCATTCAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000418498.5
ENST00000546910.6
ENST00000551012.6
CDS-3UTR GCA 90 bp CCAGACGACCTGTATGGATTCAAAAAGAGTTGCAAGTATAGTTCTTGTCACAGGCTTCTTCACAGTCTCTaGCTTGGTAGCATCCCCAAG +
Preference number: 4 (lower is better)
Translates to: PDDLYGFKKSCKYSSCHRLLHSL*LGSIPK
Trigger: CTTGGGGATGCTACCAAGGCAGAGACTGTGAAGAAG...CCTGTGACAAGAACTATACTTGCAACTCTTTTTGAATCCATACAGGTCGTCTGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000418498.5
ENST00000546910.6
CDS-3UTR GCA 90 bp AAGAATCATTGGCCAGACGACCTGTATGGATTCAAAAAGAGTTGCAAGTATAGTAAGGCTAGGCTTGCTTaGAGATGGGGGTCTTCCTGG +
Preference number: 4 (lower is better)
Translates to: KNHWPDDLYGFKKSCKYSKARLA*RWGSSW
Trigger: CCAGGAAGACCCCCATCTGCAAGCAAGCCTAGCCTT...ACTATACTTGCAACTCTTTTTGAATCCATACAGGTCGTCTGGCCAATGATTCTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENST00000418498.5
ENST00000439991.1
ENST00000546910.6
ENST00000551012.6
CDS-3UTR GCA 90 bp ATCATTGGCCAGACGACCTGTATGGATTCAAAAAGAGTTGCAAGTATAGTTCTTAAGGCTAGGCTTGCTTaGAGATGGGGGTCTTCCTGG +
Preference number: 4 (lower is better)
Translates to: IIGQTTCMDSKRVASIVLKARLA*RWGSSW
Trigger: CCAGGAAGACCCCCATCTGCAAGCAAGCCTAGCCTT...AAGAACTATACTTGCAACTCTTTTTGAATCCATACAGGTCGTCTGGCCAATGAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENST00000418498.5
ENST00000439991.1
ENST00000546910.6
ENST00000551012.6
CDS-3UTR GCA 90 bp CCTAGTAGTATGGTATACTCTGAGGCTAAAATAAAACAAACCCTGTCAACAGACACTGAGGAGAGCCTCTaGTACCCTCGCTTGTGGAGT +
Preference number: 4 (lower is better)
Translates to: PSSMVYSEAKIKQTLSTDTEESL*YPRLWS
Trigger: ACTCCACAAGCGAGGGTAGCAGAGGCTCTCCTCAGT...GTCTGTTGACAGGGTTTGTTTTATTTTAGCCTCAGAGTATACCATACTACTAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000418498.5
ENST00000546910.6
ENST00000551012.6
CDS-3UTR GCA 90 bp GAGAAGGATGAAGGCCAGATGGAGATTGCATCAGTTAGATTTTGCTATACGAGAAGAAGGTTCCTATCCTaGCCAGACCTCTCTCCATTC +
Preference number: 4 (lower is better)
Translates to: EKDEGQMEIASVRFCYTRRRFLS*PDLSPF
Trigger: GAATGGAGAGAGGTCTGGGCAGGATAGGAACCTTCT...TCTCGTATAGCAAAATCTAACTGATGCAATCTCCATCTGGCCTTCATCCTTCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000546910.6
CDS-3UTR GCA 90 bp GTTTTCTTCAAAGGGGTCTCCAAGAAGGTTCCTATCCTGCCCAGACCTCTCTCCCTTTGCAAAAGTCCCTaGTTTCATTCCAAGATGATT +
Preference number: 4 (lower is better)
Translates to: VFFKGVSKKVPILPRPLSLCKSP*FHSKMI
Trigger: AATCATCTTGGAATGAAAGCAGGGACTTTTGCAAAG...GGAGAGAGGTCTGGGCAGGATAGGAACCTTCTTGGAGACCCCTTTGAAGAAAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000546910.6
ENST00000551012.6
CDS-3UTR CCA 90 bp CTTCAAATCCTCCACAAAATGCTTCTCCTAATGTCTAATGCCATTGAGATACATTGGGGGTCTTCCTGGTaGCCTAATGCTTGGTGTGGC +
Preference number: 4 (lower is better)
Translates to: LQILHKMLLLMSNAIEIHWGSSW*PNAWCG
Trigger: GCCACACCAAGCATTAGGCCACCAGGAAGACCCCCA...ATGTATCTCAATGGCATTAGACATTAGGAGAAGCATTTTGTGGAGGATTTGAAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000546910.6
CDS-3UTR CCA 90 bp TATAATTTCTCACTCTACAGTTACTCCCTAGTAGTATGGTATACTCTGAGGCTAGGGCCTCTTTCTCCCTaGAAGGCTAGGCTTGCTTGC +
Preference number: 4 (lower is better)
Translates to: YNFSLYSYSLVVWYTLRLGPLSP*KARLAC
Trigger: GCAAGCAAGCCTAGCCTTCCAGGGAGAAAGAGGCCC...TAGCCTCAGAGTATACCATACTACTAGGGAGTAACTGTAGAGTGAGAAATTATA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000418498.5
ENST00000546910.6
ENST00000551012.6
CDS-3UTR CCA 90 bp GACCTGTATGGATTCAAAAAGAGTTGCAAGTATAGTTCTTGTCACAGGGAACTGGCTCAGTTTCCCAAATaGGCAAGGACCGCTACTGGT +
Preference number: 4 (lower is better)
Translates to: DLYGFKKSCKYSSCHRELAQFPK*ARTATG
Trigger: ACCAGTAGCGGTCCTTGCCCATTTGGGAAACTGAGC...CAGTTCCCTGTGACAAGAACTATACTTGCAACTCTTTTTGAATCCATACAGGTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000418498.5
ENST00000546910.6
ENST00000551012.6
CDS-3UTR CCA 90 bp CTTGTGGAGTTAGGAGGGGCATGTGAATGGGGTTCCCTTGAGAACAGAGACGAATACTCCCTAGTAGTATaGTATACTCTGAGGCTAAAA +
Preference number: 4 (lower is better)
Translates to: LVELGGACEWGSLENRDEYSLVV*YTLRLK
Trigger: TTTTAGCCTCAGAGTATACCATACTACTAGGGAGTA...TTCGTCTCTGTTCTCAAGGGAACCCCATTCACATGCCCCTCCTAACTCCACAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000418498.5
ENST00000546910.6
ENST00000551012.6
CDS-3UTR CCA 90 bp GGCCAGACGACCTGTATGGATTCAAAAAGAGTTGCAAGTATAGTTCTTGTCACAGAAGCCGTTGGGACTTaGGGAACTGCTCCCAAAAAT +
Preference number: 4 (lower is better)
Translates to: GQTTCMDSKRVASIVLVTEAVGT*GTAPKN
Trigger: ATTTTTGGGAGCAGTTCCCCAAGTCCCAACGGCTTC...TGTGACAAGAACTATACTTGCAACTCTTTTTGAATCCATACAGGTCGTCTGGCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000546910.6
CDS-3UTR TCA 90 bp ACGACCTGTATGGATTCAAAAAGAGTTGCAAGTATAGTTCTTGTCACAGGGAACAGATCCTGCGGTAGCTaGTGTCACATGATGCAGCAT +
Preference number: 4 (lower is better)
Translates to: TTCMDSKRVASIVLVTGNRSCGS*CHMMQH
Trigger: ATGCTGCATCATGTGACATCAGCTACCGCAGGATCT...GTTCCCTGTGACAAGAACTATACTTGCAACTCTTTTTGAATCCATACAGGTCGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000418498.5
ENST00000439991.1
ENST00000546910.6
ENST00000551012.6
CDS-3UTR GCA 90 bp GGCCAGACGACCTGTATGGATTCAAAAAGAGTTGCAAGTATAGTTCTTGTCACACGTCTCCTGAGAATATaGTCCTTTTGCCCAAGCAAC +
Preference number: 4 (lower is better)
Translates to: GQTTCMDSKRVASIVLVTRLLRI*SFCPSN
Trigger: GTTGCTTGGGCAAAAGGAGCATATTCTCAGGAGACG...TGTGACAAGAACTATACTTGCAACTCTTTTTGAATCCATACAGGTCGTCTGGCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000418498.5
ENST00000439991.1
ENST00000546910.6
ENST00000551012.6
CDS-3UTR GCA 90 bp AAAAGAATCATTGGCCAGACGACCTGTATGGATTCAAAAAGAGTTGCAAGTATACAATGCTGCTGTCCGTaGTGCTCCAAGCTCAGCACT +
Preference number: 4 (lower is better)
Translates to: KRIIGQTTCMDSKRVASIQCCCP*CSKLST
Trigger: AGTGCTGAGCTTGGAGCAGCACGGACAGCAGCATTG...TATACTTGCAACTCTTTTTGAATCCATACAGGTCGTCTGGCCAATGATTCTTTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000418498.5
ENST00000546910.6
ENST00000551012.6
CDS-3UTR GCA 90 bp TATAATTTCTCACTCTACAGTTACTCCCTAGTAGTATGGTATACTCTGAGGCTAGGGGTCAGTAGGCTGTaGCTGGTATCAGGCTTTCTC +
Preference number: 4 (lower is better)
Translates to: YNFSLYSYSLVVWYTLRLGVSRL*LVSGFL
Trigger: GAGAAAGCCTGATACCAGGCACAGCCTACTGACCCC...TAGCCTCAGAGTATACCATACTACTAGGGAGTAACTGTAGAGTGAGAAATTATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000418498.5
ENST00000546910.6
CDS-3UTR GCA 90 bp CATTGGCCAGACGACCTGTATGGATTCAAAAAGAGTTGCAAGTATAGTTCTTGTTATGTGCTTATTCCGTaGCCCCAGCCAATGTTTCCC +
Preference number: 4 (lower is better)
Translates to: HWPDDLYGFKKSCKYSSCYVLIP*PQPMFP
Trigger: GGGAAACATTGGCTGGGGGCACGGAATAAGCACATA...ACAAGAACTATACTTGCAACTCTTTTTGAATCCATACAGGTCGTCTGGCCAATG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000546910.6
CDS-3UTR GCA 90 bp ATGTGCTTATTCCGTGCCCCCAGCCAATGTTTCCCTGAGCAGCCCTTCTCTTTTACACAAAATGGTATGTaGTGTACTTTGGTGACTATT +
Preference number: 4 (lower is better)
Translates to: MCLFRAPSQCFPEQPFSFTQNGM*CTLVTI
Trigger: AATAGTCACCAAAGTACAGCACATACCATTTTGTGT...AAAAGAGAAGGGCTGCTCAGGGAAACATTGGCTGGGGGCACGGAATAAGCACAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000546910.6
CDS-3UTR CCA 90 bp AGAATCATTGGCCAGACGACCTGTATGGATTCAAAAAGAGTTGCAAGTATAGTTGCTCCCTTGGCTGCCTaGTTTTCTTCAAAGGGGTCT +
Preference number: 4 (lower is better)
Translates to: RIIGQTTCMDSKRVASIVAPLAA*FSSKGS
Trigger: AGACCCCTTTGAAGAAAACCAGGCAGCCAAGGGAGC...AACTATACTTGCAACTCTTTTTGAATCCATACAGGTCGTCTGGCCAATGATTCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000418498.5
ENST00000546910.6
ENST00000551012.6
CDS-3UTR CCA 90 bp GTGAATGGGGTTCCCTTGAGAACAGAGACGAAGTCACAGGACCTATGTTTATCCAAACTTCAGTTTCTCTaGCGTGTTGACAATTGCCAA +
Preference number: 4 (lower is better)
Translates to: VNGVPLRTETKSQDLCLSKLQFL*RVDNCQ
Trigger: TTGGCAATTGTCAACACGCCAGAGAAACTGAAGTTT...GGATAAACATAGGTCCTGTGACTTCGTCTCTGTTCTCAAGGGAACCCCATTCAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000546910.6
ENST00000551012.6
CDS-3UTR TCA 90 bp ATCATTGGCCAGACGACCTGTATGGATTCAAAAAGAGTTGCAAGTATAGTTCTTAGATCCTGCGGTAGCTaGTGTCACATGATGCAGCAT +
Preference number: 4 (lower is better)
Translates to: IIGQTTCMDSKRVASIVLRSCGS*CHMMQH
Trigger: ATGCTGCATCATGTGACATCAGCTACCGCAGGATCT...AAGAACTATACTTGCAACTCTTTTTGAATCCATACAGGTCGTCTGGCCAATGAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000418498.5
ENST00000439991.1
ENST00000546910.6
ENST00000551012.6
CDS-3UTR TCA 90 bp AAGAATCATTGGCCAGACGACCTGTATGGATTCAAAAAGAGTTGCAAGTATAGTAGATCCTGCGGTAGCTaGTGTCACATGATGCAGCAT +
Preference number: 4 (lower is better)
Translates to: KNHWPDDLYGFKKSCKYSRSCGS*CHMMQH
Trigger: ATGCTGCATCATGTGACATCAGCTACCGCAGGATCT...ACTATACTTGCAACTCTTTTTGAATCCATACAGGTCGTCTGGCCAATGATTCTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000418498.5
ENST00000439991.1
ENST00000546910.6
ENST00000551012.6
CDS-3UTR TCA 90 bp AATCATTGGCCAGACGACCTGTATGGATTCAAAAAGAGTTGCAAGTATAGTTCTAGATCCTGCGGTAGCTaGTGTCACATGATGCAGCAT +
Preference number: 4 (lower is better)
Translates to: NHWPDDLYGFKKSCKYSSRSCGS*CHMMQH
Trigger: ATGCTGCATCATGTGACATCAGCTACCGCAGGATCT...AGAACTATACTTGCAACTCTTTTTGAATCCATACAGGTCGTCTGGCCAATGATT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000418498.5
ENST00000439991.1
ENST00000546910.6
ENST00000551012.6
CDS-3UTR TCA 90 bp CAGACGACCTGTATGGATTCAAAAAGAGTTGCAAGTATAGTTCTTGTCACAGGGTGTCACAGGGAACTGTaGTCATTTGGCATTCTTCTC +
Preference number: 4 (lower is better)
Translates to: QTTCMDSKRVASIVLVTGCHREL*SFGILL
Trigger: GAGAAGAATGCCAAATGATCACAGTTCCCTGTGACA...CCCTGTGACAAGAACTATACTTGCAACTCTTTTTGAATCCATACAGGTCGTCTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000418498.5
ENST00000439991.1
ENST00000546910.6
ENST00000551012.6
CDS-3UTR TCA 90 bp GACCTGTATGGATTCAAAAAGAGTTGCAAGTATAGTTCTTGTCACAGGGAACTGAGTTCTAGATCAATGTaGTGCCAATCAGTGCCAGGC +
Preference number: 4 (lower is better)
Translates to: DLYGFKKSCKYSSCHRELSSRSM*CQSVPG
Trigger: GCCTGGCACTGATTGGCATCACATTGATCTAGAACT...CAGTTCCCTGTGACAAGAACTATACTTGCAACTCTTTTTGAATCCATACAGGTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000418498.5
ENST00000546910.6
CDS-3UTR TCA 90 bp GTGAATGGGGTTCCCTTGAGAACAGAGACGAAGTCACAGGACCTATGTTTATCCAAGCTTCTAGCAAATTaGAAAGCTACTTCTTGGATG +
Preference number: 4 (lower is better)
Translates to: VNGVPLRTETKSQDLCLSKLLAN*KATSWM
Trigger: CATCCAAGAAGTAGCTTTTCAATTTGCTAGAAGCTT...GGATAAACATAGGTCCTGTGACTTCGTCTCTGTTCTCAAGGGAACCCCATTCAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000546910.6
CDS-3UTR GCA 90 bp GTGAATGGGGTTCCCTTGAGAACAGAGACGAAGTCACAGGACCTATGTTTATCCAGAGCAAAGGAAGCCTaGTTACCTAAATTTTGGTTA +
Preference number: 4 (lower is better)
Translates to: VNGVPLRTETKSQDLCLSRAKEA*LPKFWL
Trigger: TAACCAAAATTTAGGTAAGCAGGCTTCCTTTGCTCT...GGATAAACATAGGTCCTGTGACTTCGTCTCTGTTCTCAAGGGAACCCCATTCAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000418498.5
ENST00000546910.6
CDS-3UTR GCA 90 bp ATTGGCCAGACGACCTGTATGGATTCAAAAAGAGTTGCAAGTATAGTTCTTGTCTCCCTTTTTACTATGTaGTTATTCCGTGCCCCCAGC +
Preference number: 4 (lower is better)
Translates to: IGQTTCMDSKRVASIVLVSLFTM*LFRAPS
Trigger: GCTGGGGGCACGGAATAAGCACATAGTAAAAAGGGA...GACAAGAACTATACTTGCAACTCTTTTTGAATCCATACAGGTCGTCTGGCCAAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 1 transcripts:
ENST00000546910.6
CDS-3UTR CCA 90 bp AAAAGAATCATTGGCCAGACGACCTGTATGGATTCAAAAAGAGTTGCAAGTATAGCTCAGTTTCCCAAATaGGCAAGGACCGCTACTGGT +
Preference number: 4 (lower is better)
Translates to: KRIIGQTTCMDSKRVASIAQFPK*ARTATG
Trigger: ACCAGTAGCGGTCCTTGCCCATTTGGGAAACTGAGC...TATACTTGCAACTCTTTTTGAATCCATACAGGTCGTCTGGCCAATGATTCTTTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000418498.5
ENST00000546910.6
ENST00000551012.6
CDS-3UTR CCA 90 bp TTACTCCCTAGTAGTATGGTATACTCTGAGGCTAAAATAAAACAAACCCTGTCAGCTCAGTTTCCCAAATaGGCAAGGACCGCTACTGGT +
Preference number: 4 (lower is better)
Translates to: LLPSSMVYSEAKIKQTLSAQFPK*ARTATG
Trigger: ACCAGTAGCGGTCCTTGCCCATTTGGGAAACTGAGC...TGACAGGGTTTGTTTTATTTTAGCCTCAGAGTATACCATACTACTAGGGAGTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000418498.5
ENST00000546910.6
ENST00000551012.6
CDS-3UTR CCA 90 bp ATTGGCCAGACGACCTGTATGGATTCAAAAAGAGTTGCAAGTATAGTTCTTGTCCTACTCTTCGTCGGCTaGACCAGTTCTAGATCAATG +
Preference number: 4 (lower is better)
Translates to: IGQTTCMDSKRVASIVLVLLFVG*TSSRSM
Trigger: CATTGATCTAGAACTGGTCCAGCCGACGAAGAGTAG...GACAAGAACTATACTTGCAACTCTTTTTGAATCCATACAGGTCGTCTGGCCAAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000546910.6
CDS-3UTR TCA 90 bp ACCTGTATGGATTCAAAAAGAGTTGCAAGTATAGTTCTTGTCACAGGGAACTGTAGCTCCTGGTGGTGGTaGAACCATCGTTACTTTTGT +
Preference number: 4 (lower is better)
Translates to: TCMDSKRVASIVLVTGNCSSWWW*NHRYFC
Trigger: ACAAAAGTAACGATGGTTTCACCACCACCAGGAGCT...ACAGTTCCCTGTGACAAGAACTATACTTGCAACTCTTTTTGAATCCATACAGGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000418498.5
ENST00000439991.1
ENST00000546910.6
ENST00000551012.6
CDS-3UTR TCA 90 bp CCTAGTAGTATGGTATACTCTGAGGCTAAAATAAAACAAACCCTGTCAACAGACAGCTCCTGGTGGTGGTaGAACCATCGTTACTTTTGT +
Preference number: 4 (lower is better)
Translates to: PSSMVYSEAKIKQTLSTDSSWWW*NHRYFC
Trigger: ACAAAAGTAACGATGGTTTCACCACCACCAGGAGCT...GTCTGTTGACAGGGTTTGTTTTATTTTAGCCTCAGAGTATACCATACTACTAGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000418498.5
ENST00000546910.6
ENST00000551012.6
CDS-3UTR TCA 90 bp ATTGGCCAGACGACCTGTATGGATTCAAAAAGAGTTGCAAGTATAGTTCTTGTCTGTCACAGGGAACTGTaGTCATTTGGCATTCTTCTC +
Preference number: 4 (lower is better)
Translates to: IGQTTCMDSKRVASIVLVCHREL*SFGILL
Trigger: GAGAAGAATGCCAAATGATCACAGTTCCCTGTGACA...GACAAGAACTATACTTGCAACTCTTTTTGAATCCATACAGGTCGTCTGGCCAAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000418498.5
ENST00000439991.1
ENST00000546910.6
ENST00000551012.6
CDS-3UTR TCA 90 bp TGGCCAGACGACCTGTATGGATTCAAAAAGAGTTGCAAGTATAGTTCTTGTCACGGCTTTCTCCAGAACTaGAGGGATGAATATATTGTG +
Preference number: 4 (lower is better)
Translates to: WPDDLYGFKKSCKYSSCHGFLQN*RDEYIV
Trigger: CACAATATATTCATCCCTTCAGTTCTGGAGAAAGCC...GTGACAAGAACTATACTTGCAACTCTTTTTGAATCCATACAGGTCGTCTGGCCA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000418498.5
ENST00000546910.6
CDS-3UTR TCA 90 bp AGAATCATTGGCCAGACGACCTGTATGGATTCAAAAAGAGTTGCAAGTATAGTTGTTTCTCTGGCGTGTTaGCAATTGCCAATGTGGATC +
Preference number: 4 (lower is better)
Translates to: RIIGQTTCMDSKRVASIVVSLAC*QLPMWI
Trigger: GATCCACATTGGCAATTGTCAACACGCCAGAGAAAC...AACTATACTTGCAACTCTTTTTGAATCCATACAGGTCGTCTGGCCAATGATTCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000546910.6
ENST00000551012.6
CDS-3UTR GCA 90 bp ATCATTGGCCAGACGACCTGTATGGATTCAAAAAGAGTTGCAAGTATAGTTCTTCGTCTCCTGAGAATATaGTCCTTTTGCCCAAGCAAC +
Preference number: 4 (lower is better)
Translates to: IIGQTTCMDSKRVASIVLRLLRI*SFCPSN
Trigger: GTTGCTTGGGCAAAAGGAGCATATTCTCAGGAGACG...AAGAACTATACTTGCAACTCTTTTTGAATCCATACAGGTCGTCTGGCCAATGAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000418498.5
ENST00000439991.1
ENST00000546910.6
ENST00000551012.6
CDS-3UTR GCA 90 bp AAGAATCATTGGCCAGACGACCTGTATGGATTCAAAAAGAGTTGCAAGTATAGTCGTCTCCTGAGAATATaGTCCTTTTGCCCAAGCAAC +
Preference number: 4 (lower is better)
Translates to: KNHWPDDLYGFKKSCKYSRLLRI*SFCPSN
Trigger: GTTGCTTGGGCAAAAGGAGCATATTCTCAGGAGACG...ACTATACTTGCAACTCTTTTTGAATCCATACAGGTCGTCTGGCCAATGATTCTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000418498.5
ENST00000439991.1
ENST00000546910.6
ENST00000551012.6
CDS-3UTR GCA 90 bp ACCTGTATGGATTCAAAAAGAGTTGCAAGTATAGTTCTTGTCACAGGGAACTGTCGTCTCCTGAGAATATaGTCCTTTTGCCCAAGCAAC +
Preference number: 4 (lower is better)
Translates to: TCMDSKRVASIVLVTGNCRLLRI*SFCPSN
Trigger: GTTGCTTGGGCAAAAGGAGCATATTCTCAGGAGACG...ACAGTTCCCTGTGACAAGAACTATACTTGCAACTCTTTTTGAATCCATACAGGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000418498.5
ENST00000439991.1
ENST00000546910.6
ENST00000551012.6
CDS-3UTR GCA 90 bp TTACTCCCTAGTAGTATGGTATACTCTGAGGCTAAAATAAAACAAACCCTGTCAAGAAGGTTCCTATCCTaGCCAGACCTCTCTCCATTC +
Preference number: 4 (lower is better)
Translates to: LLPSSMVYSEAKIKQTLSRRFLS*PDLSPF
Trigger: GAATGGAGAGAGGTCTGGGCAGGATAGGAACCTTCT...TGACAGGGTTTGTTTTATTTTAGCCTCAGAGTATACCATACTACTAGGGAGTAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000418498.5
ENST00000546910.6
ENST00000551012.6
CDS-3UTR GCA 90 bp CAGACGACCTGTATGGATTCAAAAAGAGTTGCAAGTATAGTTCTTGTCACAGGGCAAGATCATCCTGGTTaGTGGATGAACAATACACGA +
Preference number: 4 (lower is better)
Translates to: QTTCMDSKRVASIVLVTGQDHPG*WMNNTR
Trigger: TCGTGTATTGTTCATCCAGCAACCAGGATGATCTTG...CCCTGTGACAAGAACTATACTTGCAACTCTTTTTGAATCCATACAGGTCGTCTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000546910.6
CDS-3UTR CCA 90 bp GACCTGTATGGATTCAAAAAGAGTTGCAAGTATAGTTCTTGTCACAGGGAACTGAAAATTCCCAGTCTTTaGGGCAGACTGTTCCATAGC +
Preference number: 4 (lower is better)
Translates to: DLYGFKKSCKYSSCHRELKIPSL*GRLFHS
Trigger: GCTATGGAACAGTCTGCCCCAAAGACTGGGAATTTT...CAGTTCCCTGTGACAAGAACTATACTTGCAACTCTTTTTGAATCCATACAGGTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000546910.6
ENST00000551012.6
3UTR CAA 72 bp ATTAGGATTTCCTTTCTGTTGTCTGAGTTCTGGGGCTaGCCTTTGGCTAGAGTTCTGTTGATATTTTTCTCC +
Preference number: 4 (lower is better)
Translates to: IRISFLLSEFWG*PLARVLLIFFS
Trigger: GGAGAAAAATATCAACAGAACTCTAGCCAAAGGCAAGCCCCAGAACTCAGACAACAGAAAGGAAATCCTAAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000546910.6
CDS-3UTR TCA 90 bp AAAAGAATCATTGGCCAGACGACCTGTATGGATTCAAAAAGAGTTGCAAGTATAAGCTCCTGGTGGTGGTaGAACCATCGTTACTTTTGT +
Preference number: 4 (lower is better)
Translates to: KRIIGQTTCMDSKRVASISSWWW*NHRYFC
Trigger: ACAAAAGTAACGATGGTTTCACCACCACCAGGAGCT...TATACTTGCAACTCTTTTTGAATCCATACAGGTCGTCTGGCCAATGATTCTTTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENST00000418498.5
ENST00000439991.1
ENST00000546910.6
ENST00000551012.6
CDS-3UTR TCA 90 bp ATTGGCCAGACGACCTGTATGGATTCAAAAAGAGTTGCAAGTATAGTTCTTGTCGTAGCTGATGTCACATaGTGCAGCATCAAATGTCTT +
Preference number: 4 (lower is better)
Translates to: IGQTTCMDSKRVASIVLVVADVT*CSIKCL
Trigger: AAGACATTTGATGCTGCATCATGTGACATCAGCTAC...GACAAGAACTATACTTGCAACTCTTTTTGAATCCATACAGGTCGTCTGGCCAAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000418498.5
ENST00000439991.1
ENST00000546910.6
ENST00000551012.6
CDS-3UTR TCA 90 bp ACCTGTATGGATTCAAAAAGAGTTGCAAGTATAGTTCTTGTCACAGGGAACTGTTGTCACAGGGAACTGTaGTCATTTGGCATTCTTCTC +
Preference number: 4 (lower is better)
Translates to: TCMDSKRVASIVLVTGNCCHREL*SFGILL
Trigger: GAGAAGAATGCCAAATGATCACAGTTCCCTGTGACA...ACAGTTCCCTGTGACAAGAACTATACTTGCAACTCTTTTTGAATCCATACAGGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000418498.5
ENST00000439991.1
ENST00000546910.6
ENST00000551012.6
CDS-3UTR TCA 90 bp CCTAGTAGTATGGTATACTCTGAGGCTAAAATAAAACAAACCCTGTCAACAGACAGCAGAGTATATAGCTaGTGTCTTGTGAGTGTGGAG +
Preference number: 4 (lower is better)
Translates to: PSSMVYSEAKIKQTLSTDSRVYS*CLVSVE
Trigger: CTCCACACTCACAAGACATCAGCTATATACTCTGCT...GTCTGTTGACAGGGTTTGTTTTATTTTAGCCTCAGAGTATACCATACTACTAGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000546910.6
CDS-3UTR GCA 90 bp ATCATTGGCCAGACGACCTGTATGGATTCAAAAAGAGTTGCAAGTATAGTTCTTCCAGAGATGATCATGTaGCAGTTCATGATGAAGGAG +
Preference number: 4 (lower is better)
Translates to: IIGQTTCMDSKRVASIVLPEMIM*QFMMKE
Trigger: CTCCTTCATCATGAACTGGCACATGATCATCTCTGG...AAGAACTATACTTGCAACTCTTTTTGAATCCATACAGGTCGTCTGGCCAATGAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000418498.5
ENST00000546910.6
ENST00000551012.6
CDS-3UTR CCA 90 bp ATTGGCCAGACGACCTGTATGGATTCAAAAAGAGTTGCAAGTATAGTTCTTGTCGCCAGACGACCTGTATaGATTCAAAAAGAGTTGCAA +
Preference number: 4 (lower is better)
Translates to: IGQTTCMDSKRVASIVLVARRPV*IQKELQ
Trigger: TTGCAACTCTTTTTGAATCCATACAGGTCGTCTGGC...GACAAGAACTATACTTGCAACTCTTTTTGAATCCATACAGGTCGTCTGGCCAAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENST00000418498.5
ENST00000439991.1
ENST00000546910.6
ENST00000551012.6
CDS-3UTR CCA 90 bp TGGCCAGACGACCTGTATGGATTCAAAAAGAGTTGCAAGTATAGTTCTTGTCACAAACTTCAGTTTCTCTaGCGTGTTGACAATTGCCAA +
Preference number: 4 (lower is better)
Translates to: WPDDLYGFKKSCKYSSCHKLQFL*RVDNCQ
Trigger: TTGGCAATTGTCAACACGCCAGAGAAACTGAAGTTT...GTGACAAGAACTATACTTGCAACTCTTTTTGAATCCATACAGGTCGTCTGGCCA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000546910.6
ENST00000551012.6
CDS-3UTR TCA 90 bp TATAATTTCTCACTCTACAGTTACTCCCTAGTAGTATGGTATACTCTGAGGCTAATCCTGGTTGCTGGATaGACAATACACGAAAGGACA +
Preference number: 4 (lower is better)
Translates to: YNFSLYSYSLVVWYTLRLILVAG*TIHERT
Trigger: TGTCCTTTCGTGTATTGTTCATCCAGCAACCAGGAT...TAGCCTCAGAGTATACCATACTACTAGGGAGTAACTGTAGAGTGAGAAATTATA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000546910.6
CDS-3UTR GCA 90 bp AAGAATCATTGGCCAGACGACCTGTATGGATTCAAAAAGAGTTGCAAGTATAGTAGAATATGCTCCTTTTaGCCAAGCAACGTTCTTCCT +
Preference number: 4 (lower is better)
Translates to: KNHWPDDLYGFKKSCKYSRICSF*PSNVLP
Trigger: AGGAAGAACGTTGCTTGGGCAAAAGGAGCATATTCT...ACTATACTTGCAACTCTTTTTGAATCCATACAGGTCGTCTGGCCAATGATTCTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000418498.5
ENST00000439991.1
ENST00000546910.6
ENST00000551012.6
CDS-3UTR GCA 90 bp CTCCCTAGTAGTATGGTATACTCTGAGGCTAAAATAAAACAAACCCTGTCAACATTGATCAGTCAGAAATaGTCAGTACTACAGAAGCGG +
Preference number: 4 (lower is better)
Translates to: LPSSMVYSEAKIKQTLSTLISQK*SVLQKR
Trigger: CCGCTTCTGTAGTACTGAGCATTTCTGACTGATCAA...TGTTGACAGGGTTTGTTTTATTTTAGCCTCAGAGTATACCATACTACTAGGGAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000418498.5
ENST00000546910.6
ENST00000551012.6
CDS-3UTR GCA 90 bp CAGACGACCTGTATGGATTCAAAAAGAGTTGCAAGTATAGTTCTTGTCACAGGGAGAGCAAAGGAAGCCTaGTTACCTAAATTTTGGTTA +
Preference number: 4 (lower is better)
Translates to: QTTCMDSKRVASIVLVTGRAKEA*LPKFWL
Trigger: TAACCAAAATTTAGGTAAGCAGGCTTCCTTTGCTCT...CCCTGTGACAAGAACTATACTTGCAACTCTTTTTGAATCCATACAGGTCGTCTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000418498.5
ENST00000546910.6
CDS-3UTR GCA 90 bp CAGACGACCTGTATGGATTCAAAAAGAGTTGCAAGTATAGTTCTTGTCACAGGGCTTTGCAAAAGTCCCTaGTTTCATTCCAAGATGATT +
Preference number: 4 (lower is better)
Translates to: QTTCMDSKRVASIVLVTGLCKSP*FHSKMI
Trigger: AATCATCTTGGAATGAAAGCAGGGACTTTTGCAAAG...CCCTGTGACAAGAACTATACTTGCAACTCTTTTTGAATCCATACAGGTCGTCTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000546910.6
ENST00000551012.6
CDS-3UTR GCA 90 bp GAGAAGGATGAAGGCCAGATGGAGATTGCATCAGTTAGATTTTGCTATACGAGAGCATCAGTTAGATTTTaGTATACGAGAGATAACCAG +
Preference number: 4 (lower is better)
Translates to: EKDEGQMEIASVRFCYTRASVRF*YTRDNQ
Trigger: CTGGTTATCTCTCGTATAGCAAAATCTAACTGATGC...TCTCGTATAGCAAAATCTAACTGATGCAATCTCCATCTGGCCTTCATCCTTCTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000546910.6
CDS-3UTR CCA 90 bp AATCATTGGCCAGACGACCTGTATGGATTCAAAAAGAGTTGCAAGTATAGTTCTGCCAGACGACCTGTATaGATTCAAAAAGAGTTGCAA +
Preference number: 4 (lower is better)
Translates to: NHWPDDLYGFKKSCKYSSARRPV*IQKELQ
Trigger: TTGCAACTCTTTTTGAATCCATACAGGTCGTCTGGC...AGAACTATACTTGCAACTCTTTTTGAATCCATACAGGTCGTCTGGCCAATGATT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENST00000418498.5
ENST00000439991.1
ENST00000546910.6
ENST00000551012.6
CDS-3UTR CCA 90 bp CAGTTACTCCCTAGTAGTATGGTATACTCTGAGGCTAAAATAAAACAAACCCTGGCCAGACGACCTGTATaGATTCAAAAAGAGTTGCAA +
Preference number: 4 (lower is better)
Translates to: QLLPSSMVYSEAKIKQTLARRPV*IQKELQ
Trigger: TTGCAACTCTTTTTGAATCCATACAGGTCGTCTGGC...CAGGGTTTGTTTTATTTTAGCCTCAGAGTATACCATACTACTAGGGAGTAACTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000418498.5
ENST00000546910.6
ENST00000551012.6
CDS-3UTR CCA 90 bp CATTGGCCAGACGACCTGTATGGATTCAAAAAGAGTTGCAAGTATAGTTCTTGTGTCTTTGATCTCATGTaGCTTGGCCACAACATTTTT +
Preference number: 4 (lower is better)
Translates to: HWPDDLYGFKKSCKYSSCVFDLM*LGHNIF
Trigger: AAAAATGTTGTGGCCAAGCCACATGAGATCAAAGAC...ACAAGAACTATACTTGCAACTCTTTTTGAATCCATACAGGTCGTCTGGCCAATG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000546910.6
CDS-3UTR CCA 90 bp CATTGGCCAGACGACCTGTATGGATTCAAAAAGAGTTGCAAGTATAGTTCTTGTTACTCCCTAGTAGTATaGTATACTCTGAGGCTAAAA +
Preference number: 4 (lower is better)
Translates to: HWPDDLYGFKKSCKYSSCYSLVV*YTLRLK
Trigger: TTTTAGCCTCAGAGTATACCATACTACTAGGGAGTA...ACAAGAACTATACTTGCAACTCTTTTTGAATCCATACAGGTCGTCTGGCCAATG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000418498.5
ENST00000546910.6
ENST00000551012.6
CDS-3UTR CCA 90 bp CCAGACGACCTGTATGGATTCAAAAAGAGTTGCAAGTATAGTTCTTGTCACAGGACCAGAAAACTCCAGTaGTATACAGTGATAAGTTTT +
Preference number: 4 (lower is better)
Translates to: PDDLYGFKKSCKYSSCHRTRKLQ*YTVISF
Trigger: AAAACTTATCACTGTATACCACTGGAGTTTTCTGGT...CCTGTGACAAGAACTATACTTGCAACTCTTTTTGAATCCATACAGGTCGTCTGG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000546910.6
CDS-3UTR GCA 90 bp ACGACCTGTATGGATTCAAAAAGAGTTGCAAGTATAGTTCTTGTCACAGGGAACGGATTCAAAAAGAGTTaGAAGTATAGTTCTTGTCAC +
Preference number: 4 (lower is better)
Translates to: TTCMDSKRVASIVLVTGNGFKKS*KYSSCH
Trigger: GTGACAAGAACTATACTTGCAACTCTTTTTGAATCC...GTTCCCTGTGACAAGAACTATACTTGCAACTCTTTTTGAATCCATACAGGTCGT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENST00000418498.5
ENST00000439991.1
ENST00000546910.6
ENST00000551012.6
CDS-3UTR CCA 90 bp CCTAGTAGTATGGTATACTCTGAGGCTAAAATAAAACAAACCCTGTCAACAGACTACTCCCTAGTAGTATaGTATACTCTGAGGCTAAAA +
Preference number: 4 (lower is better)
Translates to: PSSMVYSEAKIKQTLSTDYSLVV*YTLRLK
Trigger: TTTTAGCCTCAGAGTATACCATACTACTAGGGAGTA...GTCTGTTGACAGGGTTTGTTTTATTTTAGCCTCAGAGTATACCATACTACTAGG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000418498.5
ENST00000546910.6
ENST00000551012.6
3UTR CAA 72 bp CCACTGCTATCTAATAAAGATCACATTTATCTAAGCTaGCAAGGATCCAGGAACTCTTCCAATGATGAACTT +
Preference number: 4 (lower is better)
Translates to: PLLSNKDHIYLS*QGSRNSSNDEL
Trigger: AAGTTCATCATTGGAAGAGTTCCTGGATCCTTGCAAGCTTAGATAAATGTGATCTTTATTAGATAGCAGTGG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000546910.6
CDS-3UTR GCA 90 bp AAGAATCATTGGCCAGACGACCTGTATGGATTCAAAAAGAGTTGCAAGTATAGTGGATTCAAAAAGAGTTaGAAGTATAGTTCTTGTCAC +
Preference number: 4 (lower is better)
Translates to: KNHWPDDLYGFKKSCKYSGFKKS*KYSSCH
Trigger: GTGACAAGAACTATACTTGCAACTCTTTTTGAATCC...ACTATACTTGCAACTCTTTTTGAATCCATACAGGTCGTCTGGCCAATGATTCTT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENST00000418498.5
ENST00000439991.1
ENST00000546910.6
ENST00000551012.6
CDS CCA 90 bp CTGCAGGGGCCTCTTTCTCCCTGGAAGGCTAGGCTTGCTTGCAGATaGGGGTCTTCCTGGTGGCCTAATGCTTGGTGTGGCAGGCAGGGG +
Preference number: 5 (lower is better)
Translates to: LQGPLSPWKARLACR*GSSWWPNAWCGRQG
Trigger: CCCCTGCCTGCCACACCAAGCATTAGGCCACCAGGAAGACCCCCATCTGCAAGCAAGCCTAGCCTTCCAGGGAGAAAGAGGCCCCTGCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000418498.5
ENST00000438351.1
ENST00000546910.6
ENST00000551012.6
CDS CCA 90 bp ATCTGTGGGACTCTTTCTCCCTGGAAGGCTAGGCTTGCTTGCAGATaGGGGTCTTCCTGGTGGCCTAATGCTTGGTGTGGCAGGCAGGGG +
Preference number: 5 (lower is better)
Translates to: ICGTLSPWKARLACR*GSSWWPNAWCGRQG
Trigger: CCCCTGCCTGCCACACCAAGCATTAGGCCACCAGGAAGACCCCCATCTGCAAGCAAGCCTAGCCTTCCAGGGAGAAAGAGTCCCACAGAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000439991.1
CDS CCA 90 bp GAAGAAACTTCTCTTTCTCCCTGGAAGGCTAGGCTTGCTTGCAGATaGGGGTCTTCCTGGTGGCCTAATGCTTGGTGTGGCAGGCAGGGG +
Preference number: 5 (lower is better)
Translates to: EETSLSPWKARLACR*GSSWWPNAWCGRQG
Trigger: CCCCTGCCTGCCACACCAAGCATTAGGCCACCAGGAAGACCCCCATCTGCAAGCAAGCCTAGCCTTCCAGGGAGAAAGAGAAGTTTCTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000470595.1
CDS-3UTR CAA 90 bp CTTGTGGAGTTAGGAGGGGCATGTGAATGGGGTTCCCTTGAGAACAGAGACGAATCAGTGCCAGGCTCCTaGGGGTCAGTAGGCTGTGCC +
Preference number: 5 (lower is better)
Translates to: LVELGGACEWGSLENRDESVPGS*GSVGCA
Trigger: GGCACAGCCTACTGACCCCAAGGAGCCTGGCACTGA...TTCGTCTCTGTTCTCAAGGGAACCCCATTCACATGCCCCTCCTAACTCCACAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000418498.5
ENST00000546910.6
CDS-3UTR CAA 90 bp CTCCCTTGGCTGCCTGGTTTTCTTCAAAGGGGTCTCCAAGAAGGTTCCTATCCTCCTGGAAGGCTAGGCTaGCTTGCAGATGGGGGTCTT +
Preference number: 5 (lower is better)
Translates to: LPWLPGFLQRGLQEGSYPPGRLG*LADGGL
Trigger: AAGACCCCCATCTGCAAGCAAGCCTAGCCTTCCAGG...AGGATAGGAACCTTCTTGGAGACCCCTTTGAAGAAAACCAGGCAGCCAAGGGAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000418498.5
ENST00000546910.6
ENST00000551012.6
CDS-3UTR CAA 90 bp GTTTTCTTCAAAGGGGTCTCCAAGAAGGTTCCTATCCTGCCCAGACCTCTCTCCCCTGGAAGGCTAGGCTaGCTTGCAGATGGGGGTCTT +
Preference number: 5 (lower is better)
Translates to: VFFKGVSKKVPILPRPLSPGRLG*LADGGL
Trigger: AAGACCCCCATCTGCAAGCAAGCCTAGCCTTCCAGG...GGAGAGAGGTCTGGGCAGGATAGGAACCTTCTTGGAGACCCCTTTGAAGAAAAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENST00000418498.5
ENST00000546910.6
ENST00000551012.6
CDS GCA 90 bp TTAAAAATCTGTGGGACTCTTTCTCCCTGGAAGGCTAGGCTTGCTTaGAGATGGGGGTCTTCCTGGTGGCCTAATGCTTGGTGTGGCAGG +
Preference number: 5 (lower is better)
Translates to: LKICGTLSPWKARLA*RWGSSWWPNAWCGR
Trigger: CCTGCCACACCAAGCATTAGGCCACCAGGAAGACCCCCATCTGCAAGCAAGCCTAGCCTTCCAGGGAGAAAGAGTCCCACAGATTTTTAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000439991.1
CDS-3UTR CAA 90 bp AGCACTAGGAGCCCTCCCCAAGGCCAAGCCTTAGTTCAGACTGAGGAGAGCCTCGGGAACTGTGATCATTaGGCATTCTTCTCACAGATC +
Preference number: 5 (lower is better)
Translates to: STRSPPQGQALVQTEESLGNCDH*AFFSQI
Trigger: GATCTGTGAGAAGAATGCCAAATGATCACAGTTCCC...GAGGCTCTCCTCAGTCTGAACTAAGGCTTGGCCTTGGGGAGGGCTCCTAGTGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000418498.5
ENST00000546910.6
ENST00000551012.6
CDS-3UTR CAA 90 bp CCCATAAACAATGCTGCTGTCCGTGCTGCTCCAAGCTCAGCACTAGGAGCCCTCTTGAACACAGAGTTGTaGATCCAACGCCACCTTTTC +
Preference number: 5 (lower is better)
Translates to: PINNAAVRAAPSSALGALLNTEL*IQRHLF
Trigger: GAAAAGGTGGCGTTGGATCAACAACTCTGTGTTCAA...GAGGGCTCCTAGTGCTGAGCTTGGAGCAGCACGGACAGCAGCATTGTTTATGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000418498.5
ENST00000546910.6
ENST00000551012.6
CDS-3UTR CAA 90 bp GCCTGGTTTTCTTCAAAGGGGTCTCCAAGAAGGTTCCTATCCTGCCCAGACCTCTTCACAGTCTCTGCCTaGGTAGCATCCCCAAGAAAT +
Preference number: 5 (lower is better)
Translates to: AWFSSKGSPRRFLSCPDLFTVSA*VASPRN
Trigger: ATTTCTTGGGGATGCTACCAAGGCAGAGACTGTGAA...GAGGTCTGGGCAGGATAGGAACCTTCTTGGAGACCCCTTTGAAGAAAACCAGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000418498.5
ENST00000546910.6
CDS-3UTR CAA 90 bp TTCAAAGGGGTCTCCAAGAAGGTTCCTATCCTGCCCAGACCTCTCTCCATTCCCTTCACAGTCTCTGCCTaGGTAGCATCCCCAAGAAAT +
Preference number: 5 (lower is better)
Translates to: FKGVSKKVPILPRPLSIPFTVSA*VASPRN
Trigger: ATTTCTTGGGGATGCTACCAAGGCAGAGACTGTGAA...GGGAATGGAGAGAGGTCTGGGCAGGATAGGAACCTTCTTGGAGACCCCTTTGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000418498.5
ENST00000546910.6
CDS-3UTR CAA 90 bp GCCTGGTTTTCTTCAAAGGGGTCTCCAAGAAGGTTCCTATCCTGCCCAGACCTCGAGAATATGCTCCTTTaGCCCAAGCAACGTTCTTCC +
Preference number: 5 (lower is better)
Translates to: AWFSSKGSPRRFLSCPDLENMLL*PKQRSS
Trigger: GGAAGAACGTTGCTTGGGCAAAAGGAGCATATTCTC...GAGGTCTGGGCAGGATAGGAACCTTCTTGGAGACCCCTTTGAAGAAAACCAGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000418498.5
ENST00000546910.6
ENST00000551012.6
CDS-3UTR CAA 90 bp GCCTGGTTTTCTTCAAAGGGGTCTCCAAGAAGGTTCCTATCCTGCCCAGACCTCCCATTGAACACAGAGTaGTTGATCCAACGCCACCTT +
Preference number: 5 (lower is better)
Translates to: AWFSSKGSPRRFLSCPDLPLNTE*LIQRHL
Trigger: AAGGTGGCGTTGGATCAACAACTCTGTGTTCAATGG...GAGGTCTGGGCAGGATAGGAACCTTCTTGGAGACCCCTTTGAAGAAAACCAGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000418498.5
ENST00000546910.6
ENST00000551012.6
CDS-3UTR CAA 90 bp GTTTTCTTCAAAGGGGTCTCCAAGAAGGTTCCTATCCTGCCCAGACCTCTCTCCGTGAATGGGGTTCCCTaGAGAACAGAGACGAAGTCA +
Preference number: 5 (lower is better)
Translates to: VFFKGVSKKVPILPRPLSVNGVP*RTETKS
Trigger: TGACTTCGTCTCTGTTCTCAAGGGAACCCCATTCAC...GGAGAGAGGTCTGGGCAGGATAGGAACCTTCTTGGAGACCCCTTTGAAGAAAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000418498.5
ENST00000546910.6
ENST00000551012.6
CDS-3UTR CAA 90 bp TGGCTCCCTTGGCTGCCTGGTTTTCTTCAAAGGGGTCTCCAAGAAGGTTCCTATGTGAATGGGGTTCCCTaGAGAACAGAGACGAAGTCA +
Preference number: 5 (lower is better)
Translates to: WLPWLPGFLQRGLQEGSYVNGVP*RTETKS
Trigger: TGACTTCGTCTCTGTTCTCAAGGGAACCCCATTCAC...ATAGGAACCTTCTTGGAGACCCCTTTGAAGAAAACCAGGCAGCCAAGGGAGCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000418498.5
ENST00000546910.6
ENST00000551012.6
CDS-3UTR CAA 90 bp TGGCCAGACGACCTGTATGGATTCAAAAAGAGTTGCAAGTATAGTTCTTGTCACTCAGTGCCAGGCTCCTaGGGGTCAGTAGGCTGTGCC +
Preference number: 5 (lower is better)
Translates to: WPDDLYGFKKSCKYSSCHSVPGS*GSVGCA
Trigger: GGCACAGCCTACTGACCCCAAGGAGCCTGGCACTGA...GTGACAAGAACTATACTTGCAACTCTTTTTGAATCCATACAGGTCGTCTGGCCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000418498.5
ENST00000546910.6
CDS-3UTR CAA 90 bp CTTCTCAACGGTAGCACTTATCCTTTCCCAACACAGTCAGAGAACTTGTATCTCCCTGGAAGGCTAGGCTaGCTTGCAGATGGGGGTCTT +
Preference number: 5 (lower is better)
Translates to: LLNGSTYPFPTQSENLYLPGRLG*LADGGL
Trigger: AAGACCCCCATCTGCAAGCAAGCCTAGCCTTCCAGG...GAGATACAAGTTCTCTGACTGTGTTGGGAAAGGATAAGTGCTACCGTTGAGAAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000546910.6
CDS-3UTR CAA 90 bp GGGCATGTGAATGGGGTTCCCTTGAGAACAGAGACGAAGTCACAGGACCTATGTCCATTGAACACAGAGTaGTTGATCCAACGCCACCTT +
Preference number: 5 (lower is better)
Translates to: GHVNGVPLRTETKSQDLCPLNTE*LIQRHL
Trigger: AAGGTGGCGTTGGATCAACAACTCTGTGTTCAATGG...ACATAGGTCCTGTGACTTCGTCTCTGTTCTCAAGGGAACCCCATTCACATGCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000418498.5
ENST00000546910.6
ENST00000551012.6
CDS-3UTR CAA 90 bp GCCTGGTTTTCTTCAAAGGGGTCTCCAAGAAGGTTCCTATCCTGCCCAGACCTCGGGAACTGTGATCATTaGGCATTCTTCTCACAGATC +
Preference number: 5 (lower is better)
Translates to: AWFSSKGSPRRFLSCPDLGNCDH*AFFSQI
Trigger: GATCTGTGAGAAGAATGCCAAATGATCACAGTTCCC...GAGGTCTGGGCAGGATAGGAACCTTCTTGGAGACCCCTTTGAAGAAAACCAGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000418498.5
ENST00000546910.6
ENST00000551012.6
CDS-3UTR CAA 90 bp TCCATTCCCATAAACAATGCTGCTGTCCGTGCTGCTCCAAGCTCAGCACTAGGATTGAACACAGAGTTGTaGATCCAACGCCACCTTTTC +
Preference number: 5 (lower is better)
Translates to: SIPINNAAVRAAPSSALGLNTEL*IQRHLF
Trigger: GAAAAGGTGGCGTTGGATCAACAACTCTGTGTTCAA...TCCTAGTGCTGAGCTTGGAGCAGCACGGACAGCAGCATTGTTTATGGGAATGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000418498.5
ENST00000546910.6
ENST00000551012.6
CDS-3UTR CAA 90 bp CTGGTTTTCTTCAAAGGGGTCTCCAAGAAGGTTCCTATCCTGCCCAGACCTCTCAGTTTCTCTGGCGTGTaGACAATTGCCAATGTGGAT +
Preference number: 5 (lower is better)
Translates to: LVFFKGVSKKVPILPRPLSFSGV*TIANVD
Trigger: ATCCACATTGGCAATTGTCAACACGCCAGAGAAACT...GAGAGGTCTGGGCAGGATAGGAACCTTCTTGGAGACCCCTTTGAAGAAAACCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000546910.6
ENST00000551012.6
CDS-3UTR CAA 90 bp GTGAATGGGGTTCCCTTGAGAACAGAGACGAAGTCACAGGACCTATGTTTATCCCAGCATCAAATGTCTTaGTTAGGCCAATGGTCGCAC +
Preference number: 5 (lower is better)
Translates to: VNGVPLRTETKSQDLCLSQHQMS*LGQWSH
Trigger: GTGCGACCATTGGCCTAACAAAGACATTTGATGCTG...GGATAAACATAGGTCCTGTGACTTCGTCTCTGTTCTCAAGGGAACCCCATTCAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000418498.5
ENST00000546910.6
ENST00000551012.6
CDS-3UTR CAA 90 bp CTTGAGAACAGAGACGAAGTCACAGGACCTATGTTTATCCCTCTTCCACCATGGACACAGTCAGAGAACTaGTATCTCCACCGGCTACTA +
Preference number: 5 (lower is better)
Translates to: LENRDEVTGPMFIPLPPWTQSEN*YLHRLL
Trigger: TAGTAGCCGGTGGAGATACAAGTTCTCTGACTGTGT...CCATGGTGGAAGAGGGATAAACATAGGTCCTGTGACTTCGTCTCTGTTCTCAAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000546910.6
CDS-3UTR CAA 90 bp TGGCTCCCTTGGCTGCCTGGTTTTCTTCAAAGGGGTCTCCAAGAAGGTTCCTATAAGGCCAGATGGAGATaGCATCAGTTAGATTTTGCT +
Preference number: 5 (lower is better)
Translates to: WLPWLPGFLQRGLQEGSYKARWR*HQLDFA
Trigger: AGCAAAATCTAACTGATGCAATCTCCATCTGGCCTT...ATAGGAACCTTCTTGGAGACCCCTTTGAAGAAAACCAGGCAGCCAAGGGAGCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000546910.6
CDS-3UTR CAA 90 bp AGAATCATTGGCCAGACGACCTGTATGGATTCAAAAAGAGTTGCAAGTATAGTTCCTGGAAGGCTAGGCTaGCTTGCAGATGGGGGTCTT +
Preference number: 5 (lower is better)
Translates to: RIIGQTTCMDSKRVASIVPGRLG*LADGGL
Trigger: AAGACCCCCATCTGCAAGCAAGCCTAGCCTTCCAGG...AACTATACTTGCAACTCTTTTTGAATCCATACAGGTCGTCTGGCCAATGATTCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENST00000418498.5
ENST00000439991.1
ENST00000546910.6
ENST00000551012.6
CDS-3UTR CAA 90 bp TCTTCCCTTCTCAACGGTAGCACTTATCCTTTCCCAACACAGTCAGAGAACTTGAGGATTTCCTTTCTGTaGTCTGAGTTCTGGGGCTTG +
Preference number: 5 (lower is better)
Translates to: SSLLNGSTYPFPTQSENLRISFL*SEFWGL
Trigger: CAAGCCCCAGAACTCAGACAACAGAAAGGAAATCCT...CAAGTTCTCTGACTGTGTTGGGAAAGGATAAGTGCTACCGTTGAGAAGGGAAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000546910.6
CDS-3UTR CAA 90 bp CTTGAGAACAGAGACGAAGTCACAGGACCTATGTTTATCCCTCTTCCACCATGGTGTCTCTTCAGGGCTTaGCTGAAGAACAGAAATCTA +
Preference number: 5 (lower is better)
Translates to: LENRDEVTGPMFIPLPPWCLFRA*LKNRNL
Trigger: TAGATTTCTGTTCTTCAGCAAAGCCCTGAAGAGACA...CCATGGTGGAAGAGGGATAAACATAGGTCCTGTGACTTCGTCTCTGTTCTCAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000418498.5
ENST00000546910.6
ENST00000551012.6
CDS-3UTR CAA 90 bp TGGCCAGACGACCTGTATGGATTCAAAAAGAGTTGCAAGTATAGTTCTTGTCACGAGAATATGCTCCTTTaGCCCAAGCAACGTTCTTCC +
Preference number: 5 (lower is better)
Translates to: WPDDLYGFKKSCKYSSCHENMLL*PKQRSS
Trigger: GGAAGAACGTTGCTTGGGCAAAAGGAGCATATTCTC...GTGACAAGAACTATACTTGCAACTCTTTTTGAATCCATACAGGTCGTCTGGCCA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000418498.5
ENST00000439991.1
ENST00000546910.6
ENST00000551012.6
CDS-3UTR CAA 90 bp CAGACGACCTGTATGGATTCAAAAAGAGTTGCAAGTATAGTTCTTGTCACAGGGCAGCATCAAATGTCTTaGTTAGGCCAATGGTCGCAC +
Preference number: 5 (lower is better)
Translates to: QTTCMDSKRVASIVLVTGQHQMS*LGQWSH
Trigger: GTGCGACCATTGGCCTAACAAAGACATTTGATGCTG...CCCTGTGACAAGAACTATACTTGCAACTCTTTTTGAATCCATACAGGTCGTCTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000418498.5
ENST00000439991.1
ENST00000546910.6
ENST00000551012.6
CDS-3UTR CAA 90 bp CATTGGCCAGACGACCTGTATGGATTCAAAAAGAGTTGCAAGTATAGTTCTTGTGTGAATGGGGTTCCCTaGAGAACAGAGACGAAGTCA +
Preference number: 5 (lower is better)
Translates to: HWPDDLYGFKKSCKYSSCVNGVP*RTETKS
Trigger: TGACTTCGTCTCTGTTCTCAAGGGAACCCCATTCAC...ACAAGAACTATACTTGCAACTCTTTTTGAATCCATACAGGTCGTCTGGCCAATG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000418498.5
ENST00000546910.6
ENST00000551012.6
CDS-3UTR CAA 90 bp CAGACGACCTGTATGGATTCAAAAAGAGTTGCAAGTATAGTTCTTGTCACAGGGAGGGTACTCCAAGACTaGTCTTCCTCTTTCTTGCCT +
Preference number: 5 (lower is better)
Translates to: QTTCMDSKRVASIVLVTGRVLQD*SSSFLP
Trigger: AGGCAAGAAAGAGGAAGACAAGTCTTGGAGTACCCT...CCCTGTGACAAGAACTATACTTGCAACTCTTTTTGAATCCATACAGGTCGTCTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000546910.6
CDS-3UTR CAA 90 bp ACGACCTGTATGGATTCAAAAAGAGTTGCAAGTATAGTTCTTGTCACAGGGAACCAGCATCAAATGTCTTaGTTAGGCCAATGGTCGCAC +
Preference number: 5 (lower is better)
Translates to: TTCMDSKRVASIVLVTGNQHQMS*LGQWSH
Trigger: GTGCGACCATTGGCCTAACAAAGACATTTGATGCTG...GTTCCCTGTGACAAGAACTATACTTGCAACTCTTTTTGAATCCATACAGGTCGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000418498.5
ENST00000439991.1
ENST00000546910.6
ENST00000551012.6
CDS-3UTR CAA 90 bp TGGCCAGACGACCTGTATGGATTCAAAAAGAGTTGCAAGTATAGTTCTTGTCACGGGAACTGTGATCATTaGGCATTCTTCTCACAGATC +
Preference number: 5 (lower is better)
Translates to: WPDDLYGFKKSCKYSSCHGNCDH*AFFSQI
Trigger: GATCTGTGAGAAGAATGCCAAATGATCACAGTTCCC...GTGACAAGAACTATACTTGCAACTCTTTTTGAATCCATACAGGTCGTCTGGCCA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000418498.5
ENST00000439991.1
ENST00000546910.6
ENST00000551012.6
CDS-3UTR CAA 90 bp TGGCCAGACGACCTGTATGGATTCAAAAAGAGTTGCAAGTATAGTTCTTGTCACAGTTTCTCTGGCGTGTaGACAATTGCCAATGTGGAT +
Preference number: 5 (lower is better)
Translates to: WPDDLYGFKKSCKYSSCHSFSGV*TIANVD
Trigger: ATCCACATTGGCAATTGTCAACACGCCAGAGAAACT...GTGACAAGAACTATACTTGCAACTCTTTTTGAATCCATACAGGTCGTCTGGCCA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000546910.6
ENST00000551012.6
CDS CCA 90 bp TGGTTCCTTGACAATAATATAAGGAGAATAAGGAGAAGAGCGCAGTaGCTGAATAAAGTTTCCATTAGTCATCCCCCTACAGGAACACCA +
Preference number: 5 (lower is better)
Translates to: WFLDNNIRRIRRRAQ*LNKVSISHPPTGTP
Trigger: TGGTGTTCCTGTAGGGGGATGACTAATGGAAACTTTATTCAGCCACTGCGCTCTTCTCCTTATTCTCCTTATATTATTGTCAAGGAACCA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000481301.1
CDS-3UTR CAA 90 bp CAGTTACTCCCTAGTAGTATGGTATACTCTGAGGCTAAAATAAAACAAACCCTGGAGAATATGCTCCTTTaGCCCAAGCAACGTTCTTCC +
Preference number: 5 (lower is better)
Translates to: QLLPSSMVYSEAKIKQTLENMLL*PKQRSS
Trigger: GGAAGAACGTTGCTTGGGCAAAAGGAGCATATTCTC...CAGGGTTTGTTTTATTTTAGCCTCAGAGTATACCATACTACTAGGGAGTAACTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000418498.5
ENST00000546910.6
ENST00000551012.6
CDS-3UTR CAA 90 bp GACGACCTGTATGGATTCAAAAAGAGTTGCAAGTATAGTTCTTGTCACAGGGAATTGAACACAGAGTTGTaGATCCAACGCCACCTTTTC +
Preference number: 5 (lower is better)
Translates to: DDLYGFKKSCKYSSCHRELNTEL*IQRHLF
Trigger: GAAAAGGTGGCGTTGGATCAACAACTCTGTGTTCAA...TTCCCTGTGACAAGAACTATACTTGCAACTCTTTTTGAATCCATACAGGTCGTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000418498.5
ENST00000439991.1
ENST00000546910.6
ENST00000551012.6
CDS-3UTR CAA 90 bp ACCTGTATGGATTCAAAAAGAGTTGCAAGTATAGTTCTTGTCACAGGGAACTGTCCATTGAACACAGAGTaGTTGATCCAACGCCACCTT +
Preference number: 5 (lower is better)
Translates to: TCMDSKRVASIVLVTGNCPLNTE*LIQRHL
Trigger: AAGGTGGCGTTGGATCAACAACTCTGTGTTCAATGG...ACAGTTCCCTGTGACAAGAACTATACTTGCAACTCTTTTTGAATCCATACAGGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000418498.5
ENST00000439991.1
ENST00000546910.6
ENST00000551012.6
CDS-3UTR CAA 90 bp ATCATTGGCCAGACGACCTGTATGGATTCAAAAAGAGTTGCAAGTATAGTTCTTCAGCATCAAATGTCTTaGTTAGGCCAATGGTCGCAC +
Preference number: 5 (lower is better)
Translates to: IIGQTTCMDSKRVASIVLQHQMS*LGQWSH
Trigger: GTGCGACCATTGGCCTAACAAAGACATTTGATGCTG...AAGAACTATACTTGCAACTCTTTTTGAATCCATACAGGTCGTCTGGCCAATGAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000418498.5
ENST00000439991.1
ENST00000546910.6
ENST00000551012.6
CDS-3UTR CAA 90 bp ACGACCTGTATGGATTCAAAAAGAGTTGCAAGTATAGTTCTTGTCACAGGGAACGGGAACTGTGATCATTaGGCATTCTTCTCACAGATC +
Preference number: 5 (lower is better)
Translates to: TTCMDSKRVASIVLVTGNGNCDH*AFFSQI
Trigger: GATCTGTGAGAAGAATGCCAAATGATCACAGTTCCC...GTTCCCTGTGACAAGAACTATACTTGCAACTCTTTTTGAATCCATACAGGTCGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000418498.5
ENST00000439991.1
ENST00000546910.6
ENST00000551012.6
CDS-3UTR CAA 90 bp GGCCAGACGACCTGTATGGATTCAAAAAGAGTTGCAAGTATAGTTCTTGTCACATGTCTCTTCAGGGCTTaGCTGAAGAACAGAAATCTA +
Preference number: 5 (lower is better)
Translates to: GQTTCMDSKRVASIVLVTCLFRA*LKNRNL
Trigger: TAGATTTCTGTTCTTCAGCAAAGCCCTGAAGAGACA...TGTGACAAGAACTATACTTGCAACTCTTTTTGAATCCATACAGGTCGTCTGGCC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000418498.5
ENST00000546910.6
ENST00000551012.6
CDS-3UTR CAA 90 bp CAGACGACCTGTATGGATTCAAAAAGAGTTGCAAGTATAGTTCTTGTCACAGGGTTGATCTCATGTGGCTaGGCCACAACATTTTTAAGG +
Preference number: 5 (lower is better)
Translates to: QTTCMDSKRVASIVLVTGLISCG*ATTFLR
Trigger: CCTTAAAAATGTTGTGGCCAAGCCACATGAGATCAA...CCCTGTGACAAGAACTATACTTGCAACTCTTTTTGAATCCATACAGGTCGTCTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000546910.6
CDS-3UTR CAA 90 bp CCTAGTAGTATGGTATACTCTGAGGCTAAAATAAAACAAACCCTGTCAACAGACTTGAACACAGAGTTGTaGATCCAACGCCACCTTTTC +
Preference number: 5 (lower is better)
Translates to: PSSMVYSEAKIKQTLSTDLNTEL*IQRHLF
Trigger: GAAAAGGTGGCGTTGGATCAACAACTCTGTGTTCAA...GTCTGTTGACAGGGTTTGTTTTATTTTAGCCTCAGAGTATACCATACTACTAGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000418498.5
ENST00000546910.6
ENST00000551012.6
CDS-3UTR CAA 90 bp GACCTGTATGGATTCAAAAAGAGTTGCAAGTATAGTTCTTGTCACAGGGAACTGTGTCTCTTCAGGGCTTaGCTGAAGAACAGAAATCTA +
Preference number: 5 (lower is better)
Translates to: DLYGFKKSCKYSSCHRELCLFRA*LKNRNL
Trigger: TAGATTTCTGTTCTTCAGCAAAGCCCTGAAGAGACA...CAGTTCCCTGTGACAAGAACTATACTTGCAACTCTTTTTGAATCCATACAGGTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000418498.5
ENST00000546910.6
ENST00000551012.6
CDS-3UTR CAA 90 bp ACGACCTGTATGGATTCAAAAAGAGTTGCAAGTATAGTTCTTGTCACAGGGAACTTGGTAACATTGCCATaGAACACAGAGTTGTTGATC +
Preference number: 5 (lower is better)
Translates to: TTCMDSKRVASIVLVTGNLVTLP*NTELLI
Trigger: GATCAACAACTCTGTGTTCAATGGCAATGTTACCAA...GTTCCCTGTGACAAGAACTATACTTGCAACTCTTTTTGAATCCATACAGGTCGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000418498.5
ENST00000439991.1
ENST00000546910.6
ENST00000551012.6
CDS-3UTR CAA 90 bp CATTGGCCAGACGACCTGTATGGATTCAAAAAGAGTTGCAAGTATAGTTCTTGTTTGGTAACATTGCCATaGAACACAGAGTTGTTGATC +
Preference number: 5 (lower is better)
Translates to: HWPDDLYGFKKSCKYSSCLVTLP*NTELLI
Trigger: GATCAACAACTCTGTGTTCAATGGCAATGTTACCAA...ACAAGAACTATACTTGCAACTCTTTTTGAATCCATACAGGTCGTCTGGCCAATG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000418498.5
ENST00000439991.1
ENST00000546910.6
ENST00000551012.6
CDS-3UTR CAA 90 bp ATCATTGGCCAGACGACCTGTATGGATTCAAAAAGAGTTGCAAGTATAGTTCTTGCACCCTTCTCTGACTaGCACAAATTTTTATTCCCA +
Preference number: 5 (lower is better)
Translates to: IIGQTTCMDSKRVASIVLAPFSD*HKFLFP
Trigger: TGGGAATAAAAATTTGTGCAAGTCAGAGAAGGGTGC...AAGAACTATACTTGCAACTCTTTTTGAATCCATACAGGTCGTCTGGCCAATGAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000546910.6
CDS TCA 90 bp GAAGAGGTCCAAGAAAGGAGAGTACGAGTTTACTGGTTTGGGTTATaGATCCTGCAACTAAGTCATGAAACAGTGATACATATTTTTGCT +
Preference number: 5 (lower is better)
Translates to: EEVQERRVRVYWFGL*ILQLSHETVIHIFA
Trigger: AGCAAAAATATGTATCACTGTTTCATGACTTAGTTGCAGGATTCATAACCCAAACCAGTAAACTCGTACTCTCCTTTCTTGGACCTCTTC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000481301.1
CDS-3UTR CAA 90 bp ATCATTGGCCAGACGACCTGTATGGATTCAAAAAGAGTTGCAAGTATAGTTCTTTTGGTAACATTGCCATaGAACACAGAGTTGTTGATC +
Preference number: 5 (lower is better)
Translates to: IIGQTTCMDSKRVASIVLLVTLP*NTELLI
Trigger: GATCAACAACTCTGTGTTCAATGGCAATGTTACCAA...AAGAACTATACTTGCAACTCTTTTTGAATCCATACAGGTCGTCTGGCCAATGAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000418498.5
ENST00000439991.1
ENST00000546910.6
ENST00000551012.6
CDS-3UTR CAA 90 bp AGAATCATTGGCCAGACGACCTGTATGGATTCAAAAAGAGTTGCAAGTATAGTTGGTATGTGCTGTACTTaGGTGACTATTATTTCCATC +
Preference number: 5 (lower is better)
Translates to: RIIGQTTCMDSKRVASIVGMCCT*VTIISI
Trigger: GATGGAAATAATAGTCACCAAAGTACAGCACATACC...AACTATACTTGCAACTCTTTTTGAATCCATACAGGTCGTCTGGCCAATGATTCT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000546910.6
CDS-3UTR CAA 90 bp TATAATTTCTCACTCTACAGTTACTCCCTAGTAGTATGGTATACTCTGAGGCTAAAGTGTCTCCTAATCTaGGGGGAAATTAAACTGTCT +
Preference number: 5 (lower is better)
Translates to: YNFSLYSYSLVVWYTLRLKCLLI*GEIKLS
Trigger: AGACAGTTTAATTTCCCCCAAGATTAGGAGACACTT...TAGCCTCAGAGTATACCATACTACTAGGGAGTAACTGTAGAGTGAGAAATTATA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000546910.6
CDS-3UTR CAA 90 bp AGAATCATTGGCCAGACGACCTGTATGGATTCAAAAAGAGTTGCAAGTATAGTTCTCAAATTCAGTGGCTaGCTAAATTTTCATTGCCTT +
Preference number: 5 (lower is better)
Translates to: RIIGQTTCMDSKRVASIVLKFSG*LNFHCL
Trigger: AAGGCAATGAAAATTTAGCAAGCCACTGAATTTGAG...AACTATACTTGCAACTCTTTTTGAATCCATACAGGTCGTCTGGCCAATGATTCT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000546910.6
CDS CCA 72 bp TGGAAGGCTAGGCTTGCTTGCAGATGGGGGTCTTCCTaGTGGCCTAATGCTTGGTGTGGCAGGCAGGGGCCC +
Preference number: 6 (lower is better)
Translates to: WKARLACRWGSS*WPNAWCGRQGP
Trigger: GGGCCCCTGCCTGCCACACCAAGCATTAGGCCACCAGGAAGACCCCCATCTGCAAGCAAGCCTAGCCTTCCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENST00000418498.5
ENST00000438351.1
ENST00000439991.1
ENST00000546910.6
ENST00000551012.6
CDS CCA 72 bp CCTCTTTCTCCCTGGAAGGCTAGGCTTGCTTGCAGATaGGGGTCTTCCTGGTGGCCTAATGCTTGGTGTGGC +
Preference number: 6 (lower is better)
Translates to: PLSPWKARLACR*GSSWWPNAWCG
Trigger: GCCACACCAAGCATTAGGCCACCAGGAAGACCCCCATCTGCAAGCAAGCCTAGCCTTCCAGGGAGAAAGAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000418498.5
ENST00000438351.1
ENST00000546910.6
ENST00000551012.6
CDS CCA 72 bp ACTCTTTCTCCCTGGAAGGCTAGGCTTGCTTGCAGATaGGGGTCTTCCTGGTGGCCTAATGCTTGGTGTGGC +
Preference number: 6 (lower is better)
Translates to: TLSPWKARLACR*GSSWWPNAWCG
Trigger: GCCACACCAAGCATTAGGCCACCAGGAAGACCCCCATCTGCAAGCAAGCCTAGCCTTCCAGGGAGAAAGAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000439991.1
CDS CCA 72 bp TCTCTTTCTCCCTGGAAGGCTAGGCTTGCTTGCAGATaGGGGTCTTCCTGGTGGCCTAATGCTTGGTGTGGC +
Preference number: 6 (lower is better)
Translates to: SLSPWKARLACR*GSSWWPNAWCG
Trigger: GCCACACCAAGCATTAGGCCACCAGGAAGACCCCCATCTGCAAGCAAGCCTAGCCTTCCAGGGAGAAAGAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000470595.1
CDS TCA 72 bp TCCAGGGTGAACCCAGCAATCTCAGGTTTGGTCTTTTaGAGCAAACCAAGATCCCCAGGAAACTGTGGCATG +
Preference number: 6 (lower is better)
Translates to: SRVNPAISGLVF*SKPRSPGNCGM
Trigger: CATGCCACAGTTTCCTGGGGATCTTGGTTTGCTTCAAAAGACCAAACCTGAGATTGCTGGGTTCACCCTGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000438351.1
ENST00000470595.1
CDS CAA 72 bp TCCCCAGGAAACTGTGGCATGTTCACGTACTTGCCATaGAACACAGAGTTGTTGATCCAACGCCACCTTTTC +
Preference number: 6 (lower is better)
Translates to: SPGNCGMFTYLP*NTELLIQRHLF
Trigger: GAAAAGGTGGCGTTGGATCAACAACTCTGTGTTCAATGGCAAGTACGTGAACATGCCACAGTTTCCTGGGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000438351.1
ENST00000470595.1
CDS CAA 72 bp AAAGGAGAAGAGCAGAACAGAGTCAAGTGTCAGCGTTaGAGCTATTCCAGGGTGAACCCAGCAATCTCAGGT +
Preference number: 6 (lower is better)
Translates to: KGEEQNRVKCQR*SYSRVNPAISG
Trigger: ACCTGAGATTGCTGGGTTCACCCTGGAATAGCTCAAACGCTGACACTTGACTCTGTTCTGCTCTTCTCCTTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000438351.1
ENST00000470595.1
CDS CAA 90 bp GGTTGGAAGAAAGGAGAAGAGCAGAACAGAGTCAAGTGTCAGCGTTaGAGCTATTCCAGGGTGAACCCAGCAATCTCAGGTTTGGTCTTT +
Preference number: 6 (lower is better)
Translates to: GWKKGEEQNRVKCQR*SYSRVNPAISGLVF
Trigger: AAAGACCAAACCTGAGATTGCTGGGTTCACCCTGGAATAGCTCAAACGCTGACACTTGACTCTGTTCTGCTCTTCTCCTTTCTTCCAACC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000438351.1
ENST00000470595.1
CDS CAA 72 bp TGTGGCATGTTCACGTACTTGCCATTGAACACAGAGTaGTTGATCCAACGCCACCTTTTCTCTTCACGATGG +
Preference number: 6 (lower is better)
Translates to: CGMFTYLPLNTE*LIQRHLFSSRW
Trigger: CCATCGTGAAGAGAAAAGGTGGCGTTGGATCAACAACTCTGTGTTCAATGGCAAGTACGTGAACATGCCACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000438351.1
ENST00000470595.1
CDS GCA 72 bp CTGAAGAAACTTCAGTTTCTCTGGCGTGTTGACAATTaGCAATGTGGATCCTTTTCCTTTGCAAAAGTCCCT +
Preference number: 6 (lower is better)
Translates to: LKKLQFLWRVDN*QCGSFSFAKVP
Trigger: AGGGACTTTTGCAAAGGAAAAGGATCCACATTGGCAATTGTCAACACGCCAGAGAAACTGAAGTTTCTTCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000438351.1
ENST00000481301.1
ENST00000546910.6
ENST00000551012.6
CDS TCA 72 bp TTATGTCCTGAAGAAACTTCAGTTTCTCTGGCGTGTTaGCAATTGCCAATGTGGATCCTTTTCCTTTGCAAA +
Preference number: 6 (lower is better)
Translates to: LCPEETSVSLAC*QLPMWILFLCK
Trigger: TTTGCAAAGGAAAAGGATCCACATTGGCAATTGTCAACACGCCAGAGAAACTGAAGTTTCTTCAGGACATAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000438351.1
ENST00000481301.1
ENST00000546910.6
ENST00000551012.6
CDS CCA 72 bp GACAATAATATAAGGAGAATAAGGAGAAGAGCGCAGTaGCTGAATAAAGTTTCCATTAGTCATCCCCCTACA +
Preference number: 6 (lower is better)
Translates to: DNNIRRIRRRAQ*LNKVSISHPPT
Trigger: TGTAGGGGGATGACTAATGGAAACTTTATTCAGCCACTGCGCTCTTCTCCTTATTCTCCTTATATTATTGTC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000481301.1
CDS TCA 72 bp CAAGAAAGGAGAGTACGAGTTTACTGGTTTGGGTTATaGATCCTGCAACTAAGTCATGAAACAGTGATACAT +
Preference number: 6 (lower is better)
Translates to: QERRVRVYWFGL*ILQLSHETVIH
Trigger: ATGTATCACTGTTTCATGACTTAGTTGCAGGATTCATAACCCAAACCAGTAAACTCGTACTCTCCTTTCTTG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000481301.1