Pregenerated sensors for CLEC18C (Homo sapiens)

Ensembl gene IDs: ENSG00000157335

Ensembl transcript IDs: ENST00000564976.5, ENST00000569201.6, ENST00000569268.5

Found 8 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CCA 90 bp	TGCAAGTTACTCAATCTCTCTGCCTTCATTTCTTCCGCTGTAAACTaGGACAGTGATAACCCCTTGTGGGTGATGTCTGAGGAGCTGGGT	+
Preference number: 5 (lower is better) Translates to: CKLLNLSAFISSAVN*DSDNPLWVMSEELG Trigger: ACCCAGCTCCTCAGACATCACCCACAAGGGGTTATCACTGTCCCAGTTTACAGCGGAAGAAATGAAGGCAGAGAGATTGAGTAACTTGCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000569201.6
CDS CCA 72 bp	TCTTCCGCTGTAAACTGGGACAGTGATAACCCCTTGTaGGTGATGTCTGAGGAGCTGGGTGAGGGAGCGGGA	+
Preference number: 6 (lower is better) Translates to: SSAVNWDSDNPL*VMSEELGEGAG Trigger: TCCCGCTCCCTCACCCAGCTCCTCAGACATCACCCACAAGGGGTTATCACTGTCCCAGTTTACAGCGGAAGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000569201.6
CDS CAA 72 bp	TTTCTTGAACAACCCCGAGCTCTGGCCACCCTGACCTaGCATTCCTGCAAGGCAACCAGTGGCTGGAACTCC	+
Preference number: 6 (lower is better) Translates to: FLEQPRALATLT*HSCKATSGWNS Trigger: GGAGTTCCAGCCACTGGTTGCCTTGCAGGAATGCAAGGTCAGGGTGGCCAGAGCTCGGGGTTGTTCAAGAAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000564976.5 ENST00000569201.6
CDS CAA 72 bp	ATTTCTTCCGCTGTAAACTGGGACAGTGATAACCCCTaGTGGGTGATGTCTGAGGAGCTGGGTGAGGGAGCG	+
Preference number: 6 (lower is better) Translates to: ISSAVNWDSDNP*WVMSEELGEGA Trigger: CGCTCCCTCACCCAGCTCCTCAGACATCACCCACAAGGGGTTATCACTGTCCCAGTTTACAGCGGAAGAAAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000569201.6
CDS CAA 72 bp	CAGTTTCAAGATCTCAACGTGTTGTCACTGAATGAGTaGGAAAGAGAGGCACACAGCGGGCTCCTGGGAGCT	+
Preference number: 6 (lower is better) Translates to: QFQDLNVLSLNE*EREAHSGLLGA Trigger: AGCTCCCAGGAGCCCGCTGTGTGCCTCTCTTTCCAACTCATTCAGTGACAACACGTTGAGATCTTGAAACTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000569201.6 ENST00000569268.5
CDS CAA 72 bp	AATTGTGGTTTCGAGAGTTGCCAGTGGAAGTCTGGGTaGCTGGTTTTCTTGAACAACCCCGAGCTCTGGCCA	+
Preference number: 6 (lower is better) Translates to: NCGFESCQWKSG*LVFLNNPELWP Trigger: TGGCCAGAGCTCGGGGTTGTTCAAGAAAACCAGCAACCCAGACTTCCACTGGCAACTCTCGAAACCACAATT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000564976.5 ENST00000569201.6
CDS CCA 72 bp	CTCAATCTCTCTGCCTTCATTTCTTCCGCTGTAAACTaGGACAGTGATAACCCCTTGTGGGTGATGTCTGAG	+
Preference number: 6 (lower is better) Translates to: LNLSAFISSAVN*DSDNPLWVMSE Trigger: CTCAGACATCACCCACAAGGGGTTATCACTGTCCCAGTTTACAGCGGAAGAAATGAAGGCAGAGAGATTGAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000569201.6
CDS CAA 72 bp	TATCCATGCTGTGGCCAGTTTCAAGATCTCAACGTGTaGTCACTGAATGAGTTGGAAAGAGAGGCACACAGC	+
Preference number: 6 (lower is better) Translates to: YPCCGQFQDLNV*SLNELEREAHS Trigger: GCTGTGTGCCTCTCTTTCCAACTCATTCAGTGACAACACGTTGAGATCTTGAAACTGGCCACAGCATGGATA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000569201.6 ENST00000569268.5

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu