Pregenerated sensors for CLEC18A (Homo sapiens)
Ensembl gene IDs: ENSG00000157322Ensembl transcript IDs: ENST00000565705.1, ENST00000568102.5
Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | TGCAAGTTACTCAATCTCTCTGCCTTCATTTCTTCTGCTGTAAACTaGGATAGTGATAACCCCTTGTGGGTGATGTCTGAGGAGCTGGGT | + |
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Preference number: 5 (lower is better) Translates to: CKLLNLSAFISSAVN*DSDNPLWVMSEELG Trigger: ACCCAGCTCCTCAGACATCACCCACAAGGGGTTATCACTATCCCAGTTTACAGCAGAAGAAATGAAGGCAGAGAGATTGAGTAACTTGCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000568102.5 |
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| CDS CCA 72 bp | GGGCGCGACCAGCAGCCCACAAGCCCAGGCAAGGTCTaGCCCCTGAGGAGGTTCTGTTTCACCTGCACAGTG | + |
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Preference number: 6 (lower is better) Translates to: GRDQQPTSPGKV*PLRRFCFTCTV Trigger: CACTGTGCAGGTGAAACAGAACCTCCTCAGGGGCCAGACCTTGCCTGGGCTTGTGGGCTGCTGGTCGCGCCC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000565705.1 ENST00000568102.5 |
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| CDS GCA 72 bp | CAACCCCGAGCTCTGGCCACCCTGACCTTGCATTCCTaGAAGGCAACCAGTGGCTGGAACTCCCTTAGATGG | + |
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Preference number: 6 (lower is better) Translates to: QPRALATLTLHS*KATSGWNSLRW Trigger: CCATCTAAGGGAGTTCCAGCCACTGGTTGCCTTGCAGGAATGCAAGGTCAGGGTGGCCAGAGCTCGGGGTTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000565705.1 ENST00000568102.5 |
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| CDS TCA 72 bp | ACCAGCAGCCCACAAGCCCAGGCAAGGTCTGGCCCCTaGGGAGGTTCTGTTTCACCTGCACAGTGTCTTAAA | + |
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Preference number: 6 (lower is better) Translates to: TSSPQAQARSGP*GGSVSPAQCLK Trigger: TTTAAGACACTGTGCAGGTGAAACAGAACCTCCTCAGGGGCCAGACCTTGCCTGGGCTTGTGGGCTGCTGGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000565705.1 ENST00000568102.5 |
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| CDS TCA 72 bp | AGAGTTGCCAGTGGAAGTCTGGGTTGCTGGTTTTCTTaGACAACCCCGAGCTCTGGCCACCCTGACCTTGCA | + |
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Preference number: 6 (lower is better) Translates to: RVASGSLGCWFS*TTPSSGHPDLA Trigger: TGCAAGGTCAGGGTGGCCAGAGCTCGGGGTTGTTCAAGAAAACCAGCAACCCAGACTTCCACTGGCAACTCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000565705.1 ENST00000568102.5 |
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| CDS TCA 72 bp | AGGTTGGTCTTGACCTTGGCCCCTCAGGTCAATAAGTaGCCTCCTGGCTTCTATGAGCCTTGGAGTCCACGA | + |
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Preference number: 6 (lower is better) Translates to: RLVLTLAPQVNK*PPGFYEPWSPR Trigger: TCGTGGACTCCAAGGCTCATAGAAGCCAGGAGGTCACTTATTGACCTGAGGGGCCAAGGTCAAGACCAACCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000565705.1 ENST00000568102.5 |
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| CDS CCA 72 bp | TCTTCTGCTGTAAACTGGGATAGTGATAACCCCTTGTaGGTGATGTCTGAGGAGCTGGGTGAGGGAGCGGGA | + |
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Preference number: 6 (lower is better) Translates to: SSAVNWDSDNPL*VMSEELGEGAG Trigger: TCCCGCTCCCTCACCCAGCTCCTCAGACATCACCCACAAGGGGTTATCACTATCCCAGTTTACAGCAGAAGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000568102.5 |
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| CDS TCA 72 bp | GCTGTGGCCAGTTTCAAGATCTCAACGTGTTGTCACTaGATGAGTTGGAAAGAGAGGCACACAGCGGGCTCC | + |
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Preference number: 6 (lower is better) Translates to: AVASFKISTCCH*MSWKERHTAGS Trigger: GGAGCCCGCTGTGTGCCTCTCTTTCCAACTCATTCAGTGACAACACGTTGAGATCTTGAAACTGGCCACAGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000568102.5 |
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| CDS CCA 72 bp | CTCAATCTCTCTGCCTTCATTTCTTCTGCTGTAAACTaGGATAGTGATAACCCCTTGTGGGTGATGTCTGAG | + |
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Preference number: 6 (lower is better) Translates to: LNLSAFISSAVN*DSDNPLWVMSE Trigger: CTCAGACATCACCCACAAGGGGTTATCACTATCCCAGTTTACAGCAGAAGAAATGAAGGCAGAGAGATTGAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000568102.5 |
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| CDS GCA 72 bp | TATAGCATTTGCCAATTTCTTTGGTGTAAATATCCATaGTGTGGCCAGTTTCAAGATCTCAACGTGTTGTCA | + |
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Preference number: 6 (lower is better) Translates to: YSICQFLWCKYP*CGQFQDLNVLS Trigger: TGACAACACGTTGAGATCTTGAAACTGGCCACAGCATGGATATTTACACCAAAGAAATTGGCAAATGCTATA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000568102.5 |
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