Pregenerated sensors for CLDN8 (Homo sapiens)
Ensembl gene IDs: ENSG00000156284Ensembl transcript IDs: ENST00000399899.2
Found 28 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR CCA 90 bp | AATGACAATTTTGACTCAGGTACCCACATAGGAGCAGGTGAAGTTCTCAAAGGACACACATCAGTCCTCTaGCTGCCTGTAGGTCCGGAG | + |
|
Preference number: 4 (lower is better) Translates to: NDNFDSGTHIGAGEVLKGHTSVL*LPVGPE Trigger: CTCCGGACCTACAGGCAGCCAGAGGACTGATGTGTG...TCCTTTGAGAACTTCACCTGCTCCTATGTGGGTACCTGAGTCAAAATTGTCATT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000399899.2 |
||
| CDS-3UTR CCA 90 bp | AATGACAATTTTGACTCAGGTACCCACATAGGAGCAGGTGAAGTTCTCAAAGGATGTCCCCCGTGCACCTaGTGCATTTCATGCCAAGGA | + |
|
Preference number: 4 (lower is better) Translates to: NDNFDSGTHIGAGEVLKGCPPCT*CISCQG Trigger: TCCTTGGCATGAAATGCACCAGGTGCACGGGGGACA...TCCTTTGAGAACTTCACCTGCTCCTATGTGGGTACCTGAGTCAAAATTGTCATT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000399899.2 |
||
| CDS-3UTR TCA 90 bp | AATGACAATTTTGACTCAGGTACCCACATAGGAGCAGGTGAAGTTCTCAAAGGAGGAGTAGACGCTCGGTaGCTTCTTTCCGGTGTGATA | + |
|
Preference number: 4 (lower is better) Translates to: NDNFDSGTHIGAGEVLKGGVDAR*LLSGVI Trigger: TATCACACCGGAAAGAAGTCACCGAGCGTCTACTCC...TCCTTTGAGAACTTCACCTGCTCCTATGTGGGTACCTGAGTCAAAATTGTCATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000399899.2 |
||
| CDS-3UTR CCA 90 bp | AATGACAATTTTGACTCAGGTACCCACATAGGAGCAGGTGAAGTTCTCAAAGGATCAGCACCAGTGCCGTaGTCCATCCTAAGTAGAGAG | + |
|
Preference number: 4 (lower is better) Translates to: NDNFDSGTHIGAGEVLKGSAPVP*SILSRE Trigger: CTCTCTACTTAGGATGGACCACGGCACTGGTGCTGA...TCCTTTGAGAACTTCACCTGCTCCTATGTGGGTACCTGAGTCAAAATTGTCATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000399899.2 |
||
| CDS-3UTR GCA 90 bp | AATGACAATTTTGACTCAGGTACCCACATAGGAGCAGGTGAAGTTCTCAAAGGAGCTGGACTCCGGAACTaGTACTTCTGCTTTGAAGCA | + |
|
Preference number: 4 (lower is better) Translates to: NDNFDSGTHIGAGEVLKGAGLRN*YFCFEA Trigger: TGCTTCAAAGCAGAAGTAGCAGTTCCGGAGTCCAGC...TCCTTTGAGAACTTCACCTGCTCCTATGTGGGTACCTGAGTCAAAATTGTCATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000399899.2 |
||
| CDS-3UTR GCA 90 bp | CATTCATTTAAGCTAGACAGACGTCGACACAAACTTTCAAATTGGATTGTCAGTCCCCCGTGCACCTGGTaGATTTCATGCCAAGGATGG | + |
|
Preference number: 4 (lower is better) Translates to: HSFKLDRRRHKLSNWIVSPPCTW*ISCQGW Trigger: CCATCCTTGGCATGAAATGCACCAGGTGCACGGGGG...ACTGACAATCCAATTTGAAAGTTTGTGTCGACGTCTGTCTAGCTTAAATGAATG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000399899.2 |
||
| CDS-3UTR TCA 90 bp | AATGACAATTTTGACTCAGGTACCCACATAGGAGCAGGTGAAGTTCTCAAAGGACAAGGATGGCCATCATaGAAGCCAAGAAGGACATCA | + |
|
Preference number: 4 (lower is better) Translates to: NDNFDSGTHIGAGEVLKGQGWPS*KPRRTS Trigger: TGATGTCCTTCTTGGCTTTCATGATGGCCATCCTTG...TCCTTTGAGAACTTCACCTGCTCCTATGTGGGTACCTGAGTCAAAATTGTCATT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000399899.2 |
||
| CDS-3UTR GCA 90 bp | AATGACAATTTTGACTCAGGTACCCACATAGGAGCAGGTGAAGTTCTCAAAGGACGGAACTGCTACTTCTaGTTTGAAGCAGGGTTCTCT | + |
|
Preference number: 4 (lower is better) Translates to: NDNFDSGTHIGAGEVLKGRNCYF*FEAGFS Trigger: AGAGAACCCTGCTTCAAAGCAGAAGTAGCAGTTCCG...TCCTTTGAGAACTTCACCTGCTCCTATGTGGGTACCTGAGTCAAAATTGTCATT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000399899.2 |
||
| CDS-3UTR GCA 90 bp | AATGACAATTTTGACTCAGGTACCCACATAGGAGCAGGTGAAGTTCTCAAAGGAATCCTGATGTTAGCCTaGCTCACGCAATTCATCCAC | + |
|
Preference number: 4 (lower is better) Translates to: NDNFDSGTHIGAGEVLKGILMLA*LTQFIH Trigger: GTGGATGAATTGCGTGAGGCAGGCTAACATCAGGAT...TCCTTTGAGAACTTCACCTGCTCCTATGTGGGTACCTGAGTCAAAATTGTCATT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000399899.2 |
||
| CDS-3UTR CCA 90 bp | AATGACAATTTTGACTCAGGTACCCACATAGGAGCAGGTGAAGTTCTCAAAGGAGCGATTTCTAAGGCATaGGTTGCCATTATCCTCTGG | + |
|
Preference number: 4 (lower is better) Translates to: NDNFDSGTHIGAGEVLKGAISKA*VAIILW Trigger: CCAGAGGATAATGGCAACCCATGCCTTAGAAATCGC...TCCTTTGAGAACTTCACCTGCTCCTATGTGGGTACCTGAGTCAAAATTGTCATT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000399899.2 |
||
| CDS-3UTR TCA 90 bp | CATTCATTTAAGCTAGACAGACGTCGACACAAACTTTCAAATTGGATTGTCAGTCTGCTACTTCTGCTTTaGAGCAGGGTTCTCTGTGCC | + |
|
Preference number: 4 (lower is better) Translates to: HSFKLDRRRHKLSNWIVSLLLLL*SRVLCA Trigger: GGCACAGAGAACCCTGCTTCAAAGCAGAAGTAGCAG...ACTGACAATCCAATTTGAAAGTTTGTGTCGACGTCTGTCTAGCTTAAATGAATG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000399899.2 |
||
| CDS-3UTR TCA 90 bp | CATTCATTTAAGCTAGACAGACGTCGACACAAACTTTCAAATTGGATTGTCAGTGCCGTCAGCAGAATGTaGGCCTTCACCTTCTCATTG | + |
|
Preference number: 4 (lower is better) Translates to: HSFKLDRRRHKLSNWIVSAVSRM*AFTFSL Trigger: CAATGAGAAGGTGAAGGCTCACATTCTGCTGACGGC...ACTGACAATCCAATTTGAAAGTTTGTGTCGACGTCTGTCTAGCTTAAATGAATG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000399899.2 |
||
| CDS-3UTR TCA 90 bp | CATTCATTTAAGCTAGACAGACGTCGACACAAACTTTCAAATTGGATTGTCAGTCGATGTTGTTTTCAATaGAGGCCGACACTCTCCACT | + |
|
Preference number: 4 (lower is better) Translates to: HSFKLDRRRHKLSNWIVSRCCFQ*RPTLST Trigger: AGTGGAGAGTGTCGGCCTTCATTGAAAACAACATCG...ACTGACAATCCAATTTGAAAGTTTGTGTCGACGTCTGTCTAGCTTAAATGAATG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000399899.2 |
||
| CDS-3UTR CCA 90 bp | CATTCATTTAAGCTAGACAGACGTCGACACAAACTTTCAAATTGGATTGTCAGTACACATACTGACTTCTaGAGTAGACGCTCGGTGACT | + |
|
Preference number: 4 (lower is better) Translates to: HSFKLDRRRHKLSNWIVSTHTDF*SRRSVT Trigger: AGTCACCGAGCGTCTACTCCAGAAGTCAGTATGTGT...ACTGACAATCCAATTTGAAAGTTTGTGTCGACGTCTGTCTAGCTTAAATGAATG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000399899.2 |
||
| CDS-3UTR GCA 90 bp | CATTCATTTAAGCTAGACAGACGTCGACACAAACTTTCAAATTGGATTGTCAGTAAGCAGGGTTCTCTGTaGCACAGAAGAGAACAGTTT | + |
|
Preference number: 4 (lower is better) Translates to: HSFKLDRRRHKLSNWIVSKQGSL*HRREQF Trigger: AAACTGTTCTCTTCTGTGGCACAGAGAACCCTGCTT...ACTGACAATCCAATTTGAAAGTTTGTGTCGACGTCTGTCTAGCTTAAATGAATG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000399899.2 |
||
| CDS-3UTR GCA 90 bp | AATGACAATTTTGACTCAGGTACCCACATAGGAGCAGGTGAAGTTCTCAAAGGAAGTATCTGTAGCTACTaGTCTTTTCGTTGCAACAAA | + |
|
Preference number: 4 (lower is better) Translates to: NDNFDSGTHIGAGEVLKGSICSY*SFRCNK Trigger: TTTGTTGCAACGAAAAGAGCAGTAGCTACAGATACT...TCCTTTGAGAACTTCACCTGCTCCTATGTGGGTACCTGAGTCAAAATTGTCATT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000399899.2 |
||
| CDS-3UTR CCA 90 bp | CATTCATTTAAGCTAGACAGACGTCGACACAAACTTTCAAATTGGATTGTCAGTTTTTGGGTTGTGCGATaGGAAGGTATCGAGTATCTG | + |
|
Preference number: 4 (lower is better) Translates to: HSFKLDRRRHKLSNWIVSFWVVR*EGIEYL Trigger: CAGATACTCGATACCTTCCCATCGCACAACCCAAAA...ACTGACAATCCAATTTGAAAGTTTGTGTCGACGTCTGTCTAGCTTAAATGAATG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000399899.2 |
||
| CDS-3UTR CCA 90 bp | CATTCATTTAAGCTAGACAGACGTCGACACAAACTTTCAAATTGGATTGTCAGTCCAAGCTCACGTTTTTaGGCAACATTCACTATTGAG | + |
|
Preference number: 4 (lower is better) Translates to: HSFKLDRRRHKLSNWIVSPSSRF*ATFTIE Trigger: CTCAATAGTGAATGTTGCCCAAAAACGTGAGCTTGG...ACTGACAATCCAATTTGAAAGTTTGTGTCGACGTCTGTCTAGCTTAAATGAATG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000399899.2 |
||
| CDS-3UTR GCA 90 bp | CATTCATTTAAGCTAGACAGACGTCGACACAAACTTTCAAATTGGATTGTCAGTTTTTCAAATAAGAGCTaGTTTGCTACTTCTGGCCAG | + |
|
Preference number: 4 (lower is better) Translates to: HSFKLDRRRHKLSNWIVSFSNKS*FATSGQ Trigger: CTGGCCAGAAGTAGCAAAGCAGCTCTTATTTGAAAA...ACTGACAATCCAATTTGAAAGTTTGTGTCGACGTCTGTCTAGCTTAAATGAATG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000399899.2 |
||
| CDS TCA 90 bp | TGTCCCCCGTGCACCTGGTGCATTTCATGCCAAGGATGGCCATCATaGAAGCCAAGAAGGACATCACGGAAGCAGCACACATCAGTCCTC | + |
|
Preference number: 5 (lower is better) Translates to: CPPCTWCISCQGWPS*KPRRTSRKQHTSVL Trigger: GAGGACTGATGTGTGCTGCTTCCGTGATGTCCTTCTTGGCTTTCATGATGGCCATCCTTGGCATGAAATGCACCAGGTGCACGGGGGACA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000399899.2 |
||
| CDS TCA 90 bp | ACCATGCCCGTGATGATGAAGATGATTCCAGCCGTCAGCAGAATGTaGGCCTTCACCTTCTCATTGTCCCCCGTGCACCTGGTGCATTTC | + |
|
Preference number: 5 (lower is better) Translates to: TMPVMMKMIPAVSRM*AFTFSLSPVHLVHF Trigger: GAAATGCACCAGGTGCACGGGGGACAATGAGAAGGTGAAGGCTCACATTCTGCTGACGGCTGGAATCATCTTCATCATCACGGGCATGGT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000399899.2 |
||
| CDS-3UTR CAA 90 bp | CATTCATTTAAGCTAGACAGACGTCGACACAAACTTTCAAATTGGATTGTCAGTACTGCTACTTCTGCTTaGAAGCAGGGTTCTCTGTGC | + |
|
Preference number: 5 (lower is better) Translates to: HSFKLDRRRHKLSNWIVSTATSA*KQGSLC Trigger: GCACAGAGAACCCTGCTTCAAAGCAGAAGTAGCAGT...ACTGACAATCCAATTTGAAAGTTTGTGTCGACGTCTGTCTAGCTTAAATGAATG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000399899.2 |
||
| CDS-3UTR CAA 90 bp | CATTCATTTAAGCTAGACAGACGTCGACACAAACTTTCAAATTGGATTGTCAGTTTTCTAAGGCATGGGTaGCCATTATCCTCTGGGATG | + |
|
Preference number: 5 (lower is better) Translates to: HSFKLDRRRHKLSNWIVSFLRHG*PLSSGM Trigger: CATCCCAGAGGATAATGGCAACCCATGCCTTAGAAA...ACTGACAATCCAATTTGAAAGTTTGTGTCGACGTCTGTCTAGCTTAAATGAATG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000399899.2 |
||
| CDS-3UTR CAA 90 bp | CATTCATTTAAGCTAGACAGACGTCGACACAAACTTTCAAATTGGATTGTCAGTGGTGTGATAACTTTTTaGGGTTGTGCGATGGGAAGG | + |
|
Preference number: 5 (lower is better) Translates to: HSFKLDRRRHKLSNWIVSGVITF*GCAMGR Trigger: CCTTCCCATCGCACAACCCAAAAAAGTTATCACACC...ACTGACAATCCAATTTGAAAGTTTGTGTCGACGTCTGTCTAGCTTAAATGAATG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000399899.2 |
||
| CDS TCA 72 bp | GTGATGATGAAGATGATTCCAGCCGTCAGCAGAATGTaGGCCTTCACCTTCTCATTGTCCCCCGTGCACCTG | + |
|
Preference number: 6 (lower is better) Translates to: VMMKMIPAVSRM*AFTFSLSPVHL Trigger: CAGGTGCACGGGGGACAATGAGAAGGTGAAGGCTCACATTCTGCTGACGGCTGGAATCATCTTCATCATCAC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000399899.2 |
||
| CDS CCA 72 bp | AGAACAGAGCTCCTCCAACAATCAGCACCAGTGCCGTaGTCCATCCTAAGTAGAGAGCTTCTCCAAGCTCAC | + |
|
Preference number: 6 (lower is better) Translates to: RTELLQQSAPVP*SILSRELLQAH Trigger: GTGAGCTTGGAGAAGCTCTCTACTTAGGATGGACCACGGCACTGGTGCTGATTGTTGGAGGAGCTCTGTTCT 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000399899.2 |
||
| CDS TCA 72 bp | TGCACCTGGTGCATTTCATGCCAAGGATGGCCATCATaGAAGCCAAGAAGGACATCACGGAAGCAGCACACA | + |
|
Preference number: 6 (lower is better) Translates to: CTWCISCQGWPS*KPRRTSRKQHT Trigger: TGTGTGCTGCTTCCGTGATGTCCTTCTTGGCTTTCATGATGGCCATCCTTGGCATGAAATGCACCAGGTGCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000399899.2 |
||
| CDS CAA 90 bp | GGGATGAGTTTTAGCCAGCTGGACTCCGGAACTGCTACTTCTGCTTaGAAGCAGGGTTCTCTGTGCCACAGAAGAGAACAGTTTTTCCTG | + |
|
Preference number: 6 (lower is better) Translates to: GMSFSQLDSGTATSA*KQGSLCHRREQFFL Trigger: CAGGAAAAACTGTTCTCTTCTGTGGCACAGAGAACCCTGCTTCAAAGCAGAAGTAGCAGTTCCGGAGTCCAGCTGGCTAAAACTCATCCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000399899.2 |
||