RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CLDN3 (Homo sapiens)

Ensembl gene IDs: ENSG00000165215

Ensembl transcript IDs: ENST00000395145.3

Found 105 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GGCTGCCGGTCCCTGCCCAGCGCGAGCATGGGGGCAGCGGCCCGATaGGGCTCGACGGGGTGGTCAAGTATTGGCGGTCACCCAGGCCCC +
Preference number: 1 (lower is better)
Translates to: GCRSLPSASMGAAAR*GSTGWSSIGGHPGP
Trigger: GGGGCCTGGGTGACCGCCAATACTTGACCACCCCGTCGAGCCCCATCGGGCCGCTGCCCCCATGCTCGCGCTGGGCAGGGACCGGCAGCC
74% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000395145.3
3UTR GCA 90 bp GGGTGGGCTGGCCTCCGAGGCAAGGCTGCACGCTGGATGGCCTGGTaGGCGCTCCAGCTCGCGGTGGTGGTGGTGGTGTTGGTGGTGGTG +
Preference number: 1 (lower is better)
Translates to: GWAGLRGKAARWMAW*ALQLAVVVVVLVVV
Trigger: CACCACCACCAACACCACCACCACCACCGCGAGCTGGAGCGCGCACCAGGCCATCCAGCGTGCAGCCTTGCCTCGGAGGCCAGCCCACCC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000395145.3
3UTR CCA 90 bp TGGGGGTGGGCTGGCCTCCGAGGCAAGGCTGCACGCTGGATGGCCTaGTGCGCGCTCCAGCTCGCGGTGGTGGTGGTGGTGTTGGTGGTG +
Preference number: 1 (lower is better)
Translates to: WGWAGLRGKAARWMA*CALQLAVVVVVLVV
Trigger: CACCACCAACACCACCACCACCACCGCGAGCTGGAGCGCGCACCAGGCCATCCAGCGTGCAGCCTTGCCTCGGAGGCCAGCCCACCCCCA
71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000395145.3
3UTR CCA 90 bp GCTTCTGGGGGTGGGCTGGCCTCCGAGGCAAGGCTGCACGCTGGATaGCCTGGTGCGCGCTCCAGCTCGCGGTGGTGGTGGTGGTGTTGG +
Preference number: 1 (lower is better)
Translates to: ASGGGLASEARLHAG*PGARSSSRWWWWCW
Trigger: CCAACACCACCACCACCACCGCGAGCTGGAGCGCGCACCAGGCCATCCAGCGTGCAGCCTTGCCTCGGAGGCCAGCCCACCCCCAGAAGC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000395145.3
3UTR CCA 90 bp AGGCTGCACGCTGGATGGCCTGGTGCGCGCTCCAGCTCGCGGTGGTaGTGGTGGTGTTGGTGGTGGTGGTGGTGGTGGGGTCTCCCTGCG +
Preference number: 1 (lower is better)
Translates to: RLHAGWPGARSSSRW*WWCWWWWWWWGLPA
Trigger: CGCAGGGAGACCCCACCACCACCACCACCACCAACACCACCACCACCACCGCGAGCTGGAGCGCGCACCAGGCCATCCAGCGTGCAGCCT
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000395145.3
3UTR CCA 90 bp CACGCTGGATGGCCTGGTGCGCGCTCCAGCTCGCGGTGGTGGTGGTaGTGTTGGTGGTGGTGGTGGTGGTGGGGTCTCCCTGCGTCTGTC +
Preference number: 1 (lower is better)
Translates to: HAGWPGARSSSRWWW*CWWWWWWWGLPASV
Trigger: GACAGACGCAGGGAGACCCCACCACCACCACCACCACCAACACCACCACCACCACCGCGAGCTGGAGCGCGCACCAGGCCATCCAGCGTG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000395145.3
3UTR CCA 90 bp CTGCACGCTGGATGGCCTGGTGCGCGCTCCAGCTCGCGGTGGTGGTaGTGGTGTTGGTGGTGGTGGTGGTGGTGGGGTCTCCCTGCGTCT +
Preference number: 1 (lower is better)
Translates to: LHAGWPGARSSSRWW*WCWWWWWWWGLPAS
Trigger: AGACGCAGGGAGACCCCACCACCACCACCACCACCAACACCACCACCACCACCGCGAGCTGGAGCGCGCACCAGGCCATCCAGCGTGCAG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000395145.3
3UTR CCA 90 bp GCAAGGCTGCACGCTGGATGGCCTGGTGCGCGCTCCAGCTCGCGGTaGTGGTGGTGGTGTTGGTGGTGGTGGTGGTGGTGGGGTCTCCCT +
Preference number: 1 (lower is better)
Translates to: ARLHAGWPGARSSSR*WWWCWWWWWWWGLP
Trigger: AGGGAGACCCCACCACCACCACCACCACCAACACCACCACCACCACCGCGAGCTGGAGCGCGCACCAGGCCATCCAGCGTGCAGCCTTGC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000395145.3
3UTR TCA 90 bp GTGGTCAAGTATTGGCGGTCACCCAGGCCCCGTGCTCCAGAAGGGTaGGGTTTCACAGTCCATGCAGGTTGGTCCCTGGGCCCCGAAGTC +
Preference number: 1 (lower is better)
Translates to: VVKYWRSPRPRAPEG*GFTVHAGWSLGPEV
Trigger: GACTTCGGGGCCCAGGGACCAACCTGCATGGACTGTGAAACCTCACCCTTCTGGAGCACGGGGCCTGGGTGACCGCCAATACTTGACCAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000395145.3
3UTR-3UTR CCA 90 bp GGTCCCTGGGCCCCGAAGTCGACTGCCCGGCCCGCAAAGCCGTGGCTGCTGGGGAGGCTGCACGCTGGATaGCCTGGTGCGCGCTCCAGC +
Preference number: 2 (lower is better)
Translates to: GPWAPKSTARPAKPWLLGRLHAG*PGARSS
Trigger: GCTGGAGCGCGCACCAGGCCATCCAGCGTGCAGCCT...CCCCAGCAGCCACGGCTTTGCGGGCCGGGCAGTCGACTTCGGGGCCCAGGGACC
73% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000395145.3
3UTR-3UTR CCA 90 bp GGCAGCGGCCCGATGGGGCTCGACGGGGTGGTCAAGTATTGGCGGTCACCCAGGAGCGCGGGGGCTTCCTaGCTTCTGGGGGTGGGCTGG +
Preference number: 2 (lower is better)
Translates to: GSGPMGLDGVVKYWRSPRSAGAS*LLGVGW
Trigger: CCAGCCCACCCCCAGAAGCCAGGAAGCCCCCGCGCT...CCTGGGTGACCGCCAATACTTGACCACCCCGTCGAGCCCCATCGGGCCGCTGCC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENST00000395145.3
3UTR-3UTR CCA 90 bp TCCGAGGCAAGGCTGCACGCTGGATGGCCTGGTGCGCGCTCCAGCTCGCGGTGGTGGTGGTGGTGGTGGTaGTGGGGTCTCCCTGCGTCT +
Preference number: 2 (lower is better)
Translates to: SEARLHAGWPGARSSSRWWWWWW*WGLPAS
Trigger: AGACGCAGGGAGACCCCACCACCACCACCACCACCA...CCACCGCGAGCTGGAGCGCGCACCAGGCCATCCAGCGTGCAGCCTTGCCTCGGA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000395145.3
3UTR-3UTR CCA 90 bp GGCAGCGGCCCGATGGGGCTCGACGGGGTGGTCAAGTATTGGCGGTCACCCAGGCGCTCCAGCTCGCGGTaGTGGTGGTGGTGTTGGTGG +
Preference number: 2 (lower is better)
Translates to: GSGPMGLDGVVKYWRSPRRSSSR*WWWCWW
Trigger: CCACCAACACCACCACCACCACCGCGAGCTGGAGCG...CCTGGGTGACCGCCAATACTTGACCACCCCGTCGAGCCCCATCGGGCCGCTGCC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000395145.3
3UTR-3UTR CCA 90 bp AGTCCATGCAGGTTGGTCCCTGGGCCCCGAAGTCGACTGCCCGGCCCGCAAAGCGGCAAGGCTGCACGCTaGATGGCCTGGTGCGCGCTC +
Preference number: 2 (lower is better)
Translates to: SPCRLVPGPRSRLPGPQSGKAAR*MAWCAL
Trigger: GAGCGCGCACCAGGCCATCCAGCGTGCAGCCTTGCC...GCTTTGCGGGCCGGGCAGTCGACTTCGGGGCCCAGGGACCAACCTGCATGGACT
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000395145.3
3UTR-3UTR CCA 90 bp GGCTCGACGGGGTGGTCAAGTATTGGCGGTCACCCAGGCCCCGTGCTCCAGAAGCGGCCCGCAAAGCCGTaGCTGCTGGGGAAGCTGCCC +
Preference number: 2 (lower is better)
Translates to: GSTGWSSIGGHPGPVLQKRPAKP*LLGKLP
Trigger: GGGCAGCTTCCCCAGCAGCCACGGCTTTGCGGGCCG...CTTCTGGAGCACGGGGCCTGGGTGACCGCCAATACTTGACCACCCCGTCGAGCC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000395145.3
3UTR-3UTR CCA 90 bp ACGGGGTGGTCAAGTATTGGCGGTCACCCAGGCCCCGTGCTCCAGAAGGGTGAGTCCAGCTCGCGGTGGTaGTGGTGGTGTTGGTGGTGG +
Preference number: 2 (lower is better)
Translates to: TGWSSIGGHPGPVLQKGESSSRW*WWCWWW
Trigger: CCACCACCAACACCACCACCACCACCGCGAGCTGGA...CTCACCCTTCTGGAGCACGGGGCCTGGGTGACCGCCAATACTTGACCACCCCGT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000395145.3
3UTR-3UTR GCA 90 bp GGCTCGACGGGGTGGTCAAGTATTGGCGGTCACCCAGGCCCCGTGCTCCAGAAGAGGTTTCACAGTCCATaGAGGTTGGTCCCTGGGCCC +
Preference number: 2 (lower is better)
Translates to: GSTGWSSIGGHPGPVLQKRFHSP*RLVPGP
Trigger: GGGCCCAGGGACCAACCTGCATGGACTGTGAAACCT...CTTCTGGAGCACGGGGCCTGGGTGACCGCCAATACTTGACCACCCCGTCGAGCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000395145.3
3UTR-3UTR CCA 90 bp AGGGTGAGGTTTCACAGTCCATGCAGGTTGGTCCCTGGGCCCCGAAGTCGACTGTGGTGGTGGTGGTGGTaGGGTCTCCCTGCGTCTGTC +
Preference number: 2 (lower is better)
Translates to: RVRFHSPCRLVPGPRSRLWWWWW*GLPASV
Trigger: GACAGACGCAGGGAGACCCCACCACCACCACCACCA...CAGTCGACTTCGGGGCCCAGGGACCAACCTGCATGGACTGTGAAACCTCACCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000395145.3
3UTR-3UTR CCA 90 bp AAGGGTGAGGTTTCACAGTCCATGCAGGTTGGTCCCTGGGCCCCGAAGTCGACTCAAAGCCGTGGCTGCTaGGGAAGCTGCCCCAGTCCA +
Preference number: 2 (lower is better)
Translates to: KGEVSQSMQVGPWAPKSTQSRGC*GSCPSP
Trigger: TGGACTGGGGCAGCTTCCCCAGCAGCCACGGCTTTG...AGTCGACTTCGGGGCCCAGGGACCAACCTGCATGGACTGTGAAACCTCACCCTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000395145.3
3UTR CCA 72 bp GGTGGGCTGGCCTCCGAGGCAAGGCTGCACGCTGGATaGCCTGGTGCGCGCTCCAGCTCGCGGTGGTGGTGG +
Preference number: 3 (lower is better)
Translates to: GGLASEARLHAG*PGARSSSRWWW
Trigger: CCACCACCACCGCGAGCTGGAGCGCGCACCAGGCCATCCAGCGTGCAGCCTTGCCTCGGAGGCCAGCCCACC
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000395145.3
3UTR CCA 72 bp TGGGGGTGGGCTGGCCTCCGAGGCAAGGCTGCACGCTaGATGGCCTGGTGCGCGCTCCAGCTCGCGGTGGTG +
Preference number: 3 (lower is better)
Translates to: WGWAGLRGKAAR*MAWCALQLAVV
Trigger: CACCACCGCGAGCTGGAGCGCGCACCAGGCCATCCAGCGTGCAGCCTTGCCTCGGAGGCCAGCCCACCCCCA
74% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000395145.3
3UTR CCA 72 bp GCTGGCCTCCGAGGCAAGGCTGCACGCTGGATGGCCTaGTGCGCGCTCCAGCTCGCGGTGGTGGTGGTGGTG +
Preference number: 3 (lower is better)
Translates to: AGLRGKAARWMA*CALQLAVVVVV
Trigger: CACCACCACCACCACCGCGAGCTGGAGCGCGCACCAGGCCATCCAGCGTGCAGCCTTGCCTCGGAGGCCAGC
72% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000395145.3
3UTR GCA 72 bp GGCCTCCGAGGCAAGGCTGCACGCTGGATGGCCTGGTaGGCGCTCCAGCTCGCGGTGGTGGTGGTGGTGTTG +
Preference number: 3 (lower is better)
Translates to: GLRGKAARWMAW*ALQLAVVVVVL
Trigger: CAACACCACCACCACCACCGCGAGCTGGAGCGCGCACCAGGCCATCCAGCGTGCAGCCTTGCCTCGGAGGCC
71% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000395145.3
3UTR CCA 72 bp TCCCTGCCCAGCGCGAGCATGGGGGCAGCGGCCCGATaGGGCTCGACGGGGTGGTCAAGTATTGGCGGTCAC +
Preference number: 3 (lower is better)
Translates to: SLPSASMGAAAR*GSTGWSSIGGH
Trigger: GTGACCGCCAATACTTGACCACCCCGTCGAGCCCCATCGGGCCGCTGCCCCCATGCTCGCGCTGGGCAGGGA
71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000395145.3
3UTR CCA 72 bp GCGCGCTCCAGCTCGCGGTGGTGGTGGTGGTGTTGGTaGTGGTGGTGGTGGTGGGGTCTCCCTGCGTCTGTC +
Preference number: 3 (lower is better)
Translates to: ARSSSRWWWWCW*WWWWWGLPASV
Trigger: GACAGACGCAGGGAGACCCCACCACCACCACCACCACCAACACCACCACCACCACCGCGAGCTGGAGCGCGC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000395145.3
3UTR CCA 72 bp TGGCCTGGTGCGCGCTCCAGCTCGCGGTGGTGGTGGTaGTGTTGGTGGTGGTGGTGGTGGTGGGGTCTCCCT +
Preference number: 3 (lower is better)
Translates to: WPGARSSSRWWW*CWWWWWWWGLP
Trigger: AGGGAGACCCCACCACCACCACCACCACCAACACCACCACCACCACCGCGAGCTGGAGCGCGCACCAGGCCA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000395145.3
3UTR CCA 72 bp GGATGGCCTGGTGCGCGCTCCAGCTCGCGGTGGTGGTaGTGGTGTTGGTGGTGGTGGTGGTGGTGGGGTCTC +
Preference number: 3 (lower is better)
Translates to: GWPGARSSSRWW*WCWWWWWWWGL
Trigger: GAGACCCCACCACCACCACCACCACCAACACCACCACCACCACCGCGAGCTGGAGCGCGCACCAGGCCATCC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000395145.3
3UTR CCA 72 bp CACGCTGGATGGCCTGGTGCGCGCTCCAGCTCGCGGTaGTGGTGGTGGTGTTGGTGGTGGTGGTGGTGGTGG +
Preference number: 3 (lower is better)
Translates to: HAGWPGARSSSR*WWWCWWWWWWW
Trigger: CCACCACCACCACCACCACCAACACCACCACCACCACCGCGAGCTGGAGCGCGCACCAGGCCATCCAGCGTG
69% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000395145.3
3UTR CCA 72 bp AAGGGTGAGGTTTCACAGTCCATGCAGGTTGGTCCCTaGGCCCCGAAGTCGACTGCCCGGCCCGCAAAGCCG +
Preference number: 3 (lower is better)
Translates to: KGEVSQSMQVGP*APKSTARPAKP
Trigger: CGGCTTTGCGGGCCGGGCAGTCGACTTCGGGGCCCAGGGACCAACCTGCATGGACTGTGAAACCTCACCCTT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000395145.3
CDS-3UTR GCA 90 bp GGCTGCACGCTGGATGGCCTGGTGCGCGCTCCAGCTCGCGGTGGTGGTGGTGGTGGCTGCTGGGGAAGCTaGCCCAGTCCAGCGCGGGGG +
Preference number: 4 (lower is better)
Translates to: GCTLDGLVRAPARGGGGGGCWGS*PSPARG
Trigger: CCCCCGCGCTGGACTGGGGCAGCTTCCCCAGCAGCC...ACCACCACCACCACCGCGAGCTGGAGCGCGCACCAGGCCATCCAGCGTGCAGCC
73% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000395145.3
CDS-3UTR CCA 90 bp CTCCGAGGCAAGGCTGCACGCTGGATGGCCTGGTGCGCGCTCCAGCTCGCGGTGTGGCTCCCGGGCCGGTaGAGCGCGGCGCGGAGTAGA +
Preference number: 4 (lower is better)
Translates to: LRGKAARWMAWCALQLAVWLPGR*SAARSR
Trigger: TCTACTCCGCGCCGCGCTCCACCGGCCCGGGAGCCA...CACCGCGAGCTGGAGCGCGCACCAGGCCATCCAGCGTGCAGCCTTGCCTCGGAG
73% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000395145.3
CDS-3UTR CCA 90 bp TGGTCCCTGGGCCCCGAAGTCGACTGCCCGGCCCGCAAAGCCGTGGCTGCTGGGCGGCCCGCAAAGCCGTaGCTGCTGGGGAAGCTGCCC +
Preference number: 4 (lower is better)
Translates to: WSLGPEVDCPARKAVAAGRPAKP*LLGKLP
Trigger: GGGCAGCTTCCCCAGCAGCCACGGCTTTGCGGGCCG...CCCAGCAGCCACGGCTTTGCGGGCCGGGCAGTCGACTTCGGGGCCCAGGGACCA
73% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000395145.3
CDS-3UTR GCA 90 bp TGGCCTCCGAGGCAAGGCTGCACGCTGGATGGCCTGGTGCGCGCTCCAGCTCGCTGCGGTCGTAGCCTGTaGCCAGGCTGGCTCCCGGGC +
Preference number: 4 (lower is better)
Translates to: WPPRQGCTLDGLVRAPARCGRSL*PGWLPG
Trigger: GCCCGGGAGCCAGCCTGGGCACAGGCTACGACCGCA...GCGAGCTGGAGCGCGCACCAGGCCATCCAGCGTGCAGCCTTGCCTCGGAGGCCA
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000395145.3
CDS-3UTR GCA 90 bp CTCCGAGGCAAGGCTGCACGCTGGATGGCCTGGTGCGCGCTCCAGCTCGCGGTGGGCCCCGAAGTCGACTaGCCGGCCCGCAAAGCCGTG +
Preference number: 4 (lower is better)
Translates to: LRGKAARWMAWCALQLAVGPEVD*PARKAV
Trigger: CACGGCTTTGCGGGCCGGGCAGTCGACTTCGGGGCC...CACCGCGAGCTGGAGCGCGCACCAGGCCATCCAGCGTGCAGCCTTGCCTCGGAG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000395145.3
CDS-3UTR GCA 90 bp ATGCAGGTTGGTCCCTGGGCCCCGAAGTCGACTGCCCGGCCCGCAAAGCCGTGGTGCCCCTTCCAGGGCTaGCGGTCCCTGCCCAGCGCG +
Preference number: 4 (lower is better)
Translates to: MQVGPWAPKSTARPAKPWCPFQG*RSLPSA
Trigger: CGCGCTGGGCAGGGACCGGCAGCCCTGGAAGGGGCA...CCACGGCTTTGCGGGCCGGGCAGTCGACTTCGGGGCCCAGGGACCAACCTGCAT
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000395145.3
CDS-3UTR CCA 90 bp GGCTGCACGCTGGATGGCCTGGTGCGCGCTCCAGCTCGCGGTGGTGGTGGTGGTCCAGGCCCATGGACATaGCTGCCGCGGCAAGGCCCG +
Preference number: 4 (lower is better)
Translates to: GCTLDGLVRAPARGGGGGPGPWT*LPRQGP
Trigger: CGGGCCTTGCCGCGGCAGCCATGTCCATGGGCCTGG...ACCACCACCACCACCGCGAGCTGGAGCGCGCACCAGGCCATCCAGCGTGCAGCC
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000395145.3
CDS-3UTR CCA 90 bp CTCCGAGGCAAGGCTGCACGCTGGATGGCCTGGTGCGCGCTCCAGCTCGCGGTGGCACGCTGGATGGCCTaGTGCGCGCTCCAGCTCGCG +
Preference number: 4 (lower is better)
Translates to: LRGKAARWMAWCALQLAVARWMA*CALQLA
Trigger: CGCGAGCTGGAGCGCGCACCAGGCCATCCAGCGTGC...CACCGCGAGCTGGAGCGCGCACCAGGCCATCCAGCGTGCAGCCTTGCCTCGGAG
72% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000395145.3
CDS-3UTR CCA 90 bp GGCTGCACGCTGGATGGCCTGGTGCGCGCTCCAGCTCGCGGTGGTGGTGGTGGTAGCGCGGGGGCTTCCTaGCTTCTGGGGGTGGGCTGG +
Preference number: 4 (lower is better)
Translates to: GCTLDGLVRAPARGGGGGSAGAS*LLGVGW
Trigger: CCAGCCCACCCCCAGAAGCCAGGAAGCCCCCGCGCT...ACCACCACCACCACCGCGAGCTGGAGCGCGCACCAGGCCATCCAGCGTGCAGCC
72% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000395145.3
CDS-3UTR TCA 90 bp CAGGTTGGTCCCTGGGCCCCGAAGTCGACTGCCCGGCCCGCAAAGCCGTGGCTGCCAGCGCGGTGCCCGTaGTCTCCAGGCCCATGGACA +
Preference number: 4 (lower is better)
Translates to: QVGPWAPKSTARPAKPWLPARCP*SPGPWT
Trigger: TGTCCATGGGCCTGGAGATCACGGGCACCGCGCTGG...CAGCCACGGCTTTGCGGGCCGGGCAGTCGACTTCGGGGCCCAGGGACCAACCTG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000395145.3
CDS-3UTR GCA 90 bp TCCGAGGCAAGGCTGCACGCTGGATGGCCTGGTGCGCGCTCCAGCTCGCGGTGGGGCTGCGCCTGCACCTaGCTGTGGCTTTGTGGGCGG +
Preference number: 4 (lower is better)
Translates to: SEARLHAGWPGARSSSRWGCACT*LWLCGR
Trigger: CCGCCCACAAAGCCACAGGCAGGTGCAGGCGCAGCC...CCACCGCGAGCTGGAGCGCGCACCAGGCCATCCAGCGTGCAGCCTTGCCTCGGA
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000395145.3
CDS-3UTR GCA 90 bp ATGCAGGTTGGTCCCTGGGCCCCGAAGTCGACTGCCCGGCCCGCAAAGCCGTGGGCCCATGGACATGGCTaGCGCGGCAAGGCCCGCTCC +
Preference number: 4 (lower is better)
Translates to: MQVGPWAPKSTARPAKPWAHGHG*RGKARS
Trigger: GGAGCGGGCCTTGCCGCGGCAGCCATGTCCATGGGC...CCACGGCTTTGCGGGCCGGGCAGTCGACTTCGGGGCCCAGGGACCAACCTGCAT
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000395145.3
CDS-3UTR GCA 90 bp GGCAGCGGCCCGATGGGGCTCGACGGGGTGGTCAAGTATTGGCGGTCACCCAGGCCCATCTCGCGCTTCTaGGCCTCGGGCACCACGGGG +
Preference number: 4 (lower is better)
Translates to: GSGPMGLDGVVKYWRSPRPISRF*ASGTTG
Trigger: CCCCGTGGTGCCCGAGGCGCAGAAGCGCGAGATGGG...CCTGGGTGACCGCCAATACTTGACCACCCCGTCGAGCCCCATCGGGCCGCTGCC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000395145.3
CDS-3UTR CCA 90 bp AGTCCATGCAGGTTGGTCCCTGGGCCCCGAAGTCGACTGCCCGGCCCGCAAAGCAGCCTGTGCCCAGGCTaGCTCCCGGGCCGGTGGAGC +
Preference number: 4 (lower is better)
Translates to: SPCRLVPGPRSRLPGPQSSLCPG*LPGRWS
Trigger: GCTCCACCGGCCCGGGAGCCAGCCTGGGCACAGGCT...GCTTTGCGGGCCGGGCAGTCGACTTCGGGGCCCAGGGACCAACCTGCATGGACT
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000395145.3
CDS-3UTR CCA 90 bp GGTCCCTGGGCCCCGAAGTCGACTGCCCGGCCCGCAAAGCCGTGGCTGCTGGGGTCCAGCTCGCGGTGGTaGTGGTGGTGTTGGTGGTGG +
Preference number: 4 (lower is better)
Translates to: GPWAPKSTARPAKPWLLGSSSRW*WWCWWW
Trigger: CCACCACCAACACCACCACCACCACCGCGAGCTGGA...CCCCAGCAGCCACGGCTTTGCGGGCCGGGCAGTCGACTTCGGGGCCCAGGGACC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000395145.3
CDS-3UTR CCA 90 bp CAGGTTGGTCCCTGGGCCCCGAAGTCGACTGCCCGGCCCGCAAAGCCGTGGCTGGGCAAGGCTGCACGCTaGATGGCCTGGTGCGCGCTC +
Preference number: 4 (lower is better)
Translates to: QVGPWAPKSTARPAKPWLGKAAR*MAWCAL
Trigger: GAGCGCGCACCAGGCCATCCAGCGTGCAGCCTTGCC...CAGCCACGGCTTTGCGGGCCGGGCAGTCGACTTCGGGGCCCAGGGACCAACCTG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000395145.3
CDS-3UTR CCA 90 bp CTCCGAGGCAAGGCTGCACGCTGGATGGCCTGGTGCGCGCTCCAGCTCGCGGTGCTTCTGGGGGTGGGCTaGCCTCCGAGGCAAGGCTGC +
Preference number: 4 (lower is better)
Translates to: LRGKAARWMAWCALQLAVLLGVG*PPRQGC
Trigger: GCAGCCTTGCCTCGGAGGCCAGCCCACCCCCAGAAG...CACCGCGAGCTGGAGCGCGCACCAGGCCATCCAGCGTGCAGCCTTGCCTCGGAG
71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000395145.3
CDS-3UTR TCA 90 bp TGCACGCTGGATGGCCTGGTGCGCGCTCCAGCTCGCGGTGGTGGTGGTGGTGTTGGATGGCCACCACGATaGGGGCGCGGGCCGCCTGAA +
Preference number: 4 (lower is better)
Translates to: CTLDGLVRAPARGGGGGVGWPPR*GRGPPE
Trigger: TTCAGGCGGCCCGCGCCCTCATCGTGGTGGCCATCC...AACACCACCACCACCACCGCGAGCTGGAGCGCGCACCAGGCCATCCAGCGTGCA
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000395145.3
CDS-3UTR GCA 90 bp CCGAGGCAAGGCTGCACGCTGGATGGCCTGGTGCGCGCTCCAGCTCGCGGTGGTCCTCCGAGGCAAGGCTaGACGCTGGATGGCCTGGTG +
Preference number: 4 (lower is better)
Translates to: PRQGCTLDGLVRAPARGGPPRQG*TLDGLV
Trigger: CACCAGGCCATCCAGCGTGCAGCCTTGCCTCGGAGG...ACCACCGCGAGCTGGAGCGCGCACCAGGCCATCCAGCGTGCAGCCTTGCCTCGG
70% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000395145.3
CDS-3UTR CCA 90 bp CAGGTTGGTCCCTGGGCCCCGAAGTCGACTGCCCGGCCCGCAAAGCCGTGGCTGACGCAGTTGGTGCACTaGGCGCCCACCAGCGCCACT +
Preference number: 4 (lower is better)
Translates to: QVGPWAPKSTARPAKPWLTQLVH*APTSAT
Trigger: AGTGGCGCTGGTGGGCGCCCAGTGCACCAACTGCGT...CAGCCACGGCTTTGCGGGCCGGGCAGTCGACTTCGGGGCCCAGGGACCAACCTG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000395145.3
CDS-3UTR CCA 90 bp TGGTCCCTGGGCCCCGAAGTCGACTGCCCGGCCCGCAAAGCCGTGGCTGCTGGGTGGTGGTGGTGGTGGTaGTGGGGTCTCCCTGCGTCT +
Preference number: 4 (lower is better)
Translates to: WSLGPEVDCPARKAVAAGWWWWW*WGLPAS
Trigger: AGACGCAGGGAGACCCCACCACCACCACCACCACCA...CCCAGCAGCCACGGCTTTGCGGGCCGGGCAGTCGACTTCGGGGCCCAGGGACCA
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000395145.3
CDS-3UTR CCA 90 bp GAGGCAAGGCTGCACGCTGGATGGCCTGGTGCGCGCTCCAGCTCGCGGTGGTGGCGCTCCAGCTCGCGGTaGTGGTGGTGGTGTTGGTGG +
Preference number: 4 (lower is better)
Translates to: EARLHAGWPGARSSSRWWRSSSR*WWWCWW
Trigger: CCACCAACACCACCACCACCACCGCGAGCTGGAGCG...CCACCACCGCGAGCTGGAGCGCGCACCAGGCCATCCAGCGTGCAGCCTTGCCTC
70% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000395145.3
CDS-3UTR CCA 90 bp GGTCCCTGGGCCCCGAAGTCGACTGCCCGGCCCGCAAAGCCGTGGCTGCTGGGGACAGTCCATGCAGGTTaGTCCCTGGGCCCCGAAGTC +
Preference number: 4 (lower is better)
Translates to: GPWAPKSTARPAKPWLLGTVHAG*SLGPEV
Trigger: GACTTCGGGGCCCAGGGACCAACCTGCATGGACTGT...CCCCAGCAGCCACGGCTTTGCGGGCCGGGCAGTCGACTTCGGGGCCCAGGGACC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000395145.3
CDS-3UTR GCA 90 bp TGCACGCTGGATGGCCTGGTGCGCGCTCCAGCTCGCGGTGGTGGTGGTGGTGTTCCTGCACGCAGTTGGTaGACTGGGCGCCCACCAGCG +
Preference number: 4 (lower is better)
Translates to: CTLDGLVRAPARGGGGGVPARSW*TGRPPA
Trigger: CGCTGGTGGGCGCCCAGTGCACCAACTGCGTGCAGG...AACACCACCACCACCACCGCGAGCTGGAGCGCGCACCAGGCCATCCAGCGTGCA
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000395145.3
CDS-3UTR CCA 90 bp GGCAGCGGCCCGATGGGGCTCGACGGGGTGGTCAAGTATTGGCGGTCACCCAGGACGCGCAGCACACGATaGTGCCCAGCCAGCCCAGCA +
Preference number: 4 (lower is better)
Translates to: GSGPMGLDGVVKYWRSPRTRSTR*CPASPA
Trigger: TGCTGGGCTGGCTGGGCACCATCGTGTGCTGCGCGT...CCTGGGTGACCGCCAATACTTGACCACCCCGTCGAGCCCCATCGGGCCGCTGCC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000395145.3
CDS-3UTR CCA 90 bp GAGGCAAGGCTGCACGCTGGATGGCCTGGTGCGCGCTCCAGCTCGCGGTGGTGGCAAAGCCGTGGCTGCTaGGGAAGCTGCCCCAGTCCA +
Preference number: 4 (lower is better)
Translates to: EARLHAGWPGARSSSRWWQSRGC*GSCPSP
Trigger: TGGACTGGGGCAGCTTCCCCAGCAGCCACGGCTTTG...CCACCACCGCGAGCTGGAGCGCGCACCAGGCCATCCAGCGTGCAGCCTTGCCTC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000395145.3
CDS-3UTR CCA 90 bp GGCAAGGCTGCACGCTGGATGGCCTGGTGCGCGCTCCAGCTCGCGGTGGTGGTGATGCAGGTTGGTCCCTaGGCCCCGAAGTCGACTGCC +
Preference number: 4 (lower is better)
Translates to: GKAARWMAWCALQLAVVVMQVGP*APKSTA
Trigger: GGCAGTCGACTTCGGGGCCCAGGGACCAACCTGCAT...CACCACCACCGCGAGCTGGAGCGCGCACCAGGCCATCCAGCGTGCAGCCTTGCC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000395145.3
3UTR CAA 72 bp TGGTGCGCGCTCCAGCTCGCGGTGGTGGTGGTGGTGTaGGTGGTGGTGGTGGTGGTGGGGTCTCCCTGCGTC +
Preference number: 4 (lower is better)
Translates to: WCALQLAVVVVV*VVVVVVGSPCV
Trigger: GACGCAGGGAGACCCCACCACCACCACCACCACCAACACCACCACCACCACCGCGAGCTGGAGCGCGCACCA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000395145.3
CDS-3UTR GCA 90 bp GGTGAGGTTTCACAGTCCATGCAGGTTGGTCCCTGGGCCCCGAAGTCGACTGCCAGGGCTGCCGGTCCCTaGCCAGCGCGAGCATGGGGG +
Preference number: 4 (lower is better)
Translates to: GEVSQSMQVGPWAPKSTARAAGP*PARAWG
Trigger: CCCCCATGCTCGCGCTGGGCAGGGACCGGCAGCCCT...GGCAGTCGACTTCGGGGCCCAGGGACCAACCTGCATGGACTGTGAAACCTCACC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000395145.3
CDS-3UTR CCA 90 bp GGCTCGACGGGGTGGTCAAGTATTGGCGGTCACCCAGGCCCCGTGCTCCAGAAGAGGCTGCACGCTGGATaGCCTGGTGCGCGCTCCAGC +
Preference number: 4 (lower is better)
Translates to: GSTGWSSIGGHPGPVLQKRLHAG*PGARSS
Trigger: GCTGGAGCGCGCACCAGGCCATCCAGCGTGCAGCCT...CTTCTGGAGCACGGGGCCTGGGTGACCGCCAATACTTGACCACCCCGTCGAGCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000395145.3
CDS-3UTR CCA 90 bp AGGCAAGGCTGCACGCTGGATGGCCTGGTGCGCGCTCCAGCTCGCGGTGGTGGTGGGGTGGTCAAGTATTaGCGGTCACCCAGGCCCCGT +
Preference number: 4 (lower is better)
Translates to: RQGCTLDGLVRAPARGGGGVVKY*RSPRPR
Trigger: ACGGGGCCTGGGTGACCGCCAATACTTGACCACCCC...ACCACCACCGCGAGCTGGAGCGCGCACCAGGCCATCCAGCGTGCAGCCTTGCCT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000395145.3
CDS-3UTR GCA 90 bp AGGCAAGGCTGCACGCTGGATGGCCTGGTGCGCGCTCCAGCTCGCGGTGGTGGTTTGGCCGTGTCGTCCTaGACGCAGTTGGTGCACTGG +
Preference number: 4 (lower is better)
Translates to: RQGCTLDGLVRAPARGGGLAVSS*TQLVHW
Trigger: CCAGTGCACCAACTGCGTGCAGGACGACACGGCCAA...ACCACCACCGCGAGCTGGAGCGCGCACCAGGCCATCCAGCGTGCAGCCTTGCCT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000395145.3
CDS-3UTR GCA 90 bp CTCCGAGGCAAGGCTGCACGCTGGATGGCCTGGTGCGCGCTCCAGCTCGCGGTGGTGGTGGGGTCTCCCTaGGTCTGTCCCTTAGACGTA +
Preference number: 4 (lower is better)
Translates to: LRGKAARWMAWCALQLAVVVGSP*VCPLDV
Trigger: TACGTCTAAGGGACAGACGCAGGGAGACCCCACCAC...CACCGCGAGCTGGAGCGCGCACCAGGCCATCCAGCGTGCAGCCTTGCCTCGGAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000395145.3
CDS-3UTR GCA 90 bp AGGCAAGGCTGCACGCTGGATGGCCTGGTGCGCGCTCCAGCTCGCGGTGGTGGTGTCACCCAGGCCCCGTaGTCCAGAAGGGTGAGGTTT +
Preference number: 4 (lower is better)
Translates to: RQGCTLDGLVRAPARGGGVTQAP*SRRVRF
Trigger: AAACCTCACCCTTCTGGAGCACGGGGCCTGGGTGAC...ACCACCACCGCGAGCTGGAGCGCGCACCAGGCCATCCAGCGTGCAGCCTTGCCT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000395145.3
CDS-3UTR CCA 90 bp TGCACGCTGGATGGCCTGGTGCGCGCTCCAGCTCGCGGTGGTGGTGGTGGTGTTTGGTGGTGGTGGTGGTaGGGTCTCCCTGCGTCTGTC +
Preference number: 4 (lower is better)
Translates to: CTLDGLVRAPARGGGGGVWWWWW*GLPASV
Trigger: GACAGACGCAGGGAGACCCCACCACCACCACCACCA...AACACCACCACCACCACCGCGAGCTGGAGCGCGCACCAGGCCATCCAGCGTGCA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000395145.3
CDS-3UTR CCA 90 bp AGGGTGAGGTTTCACAGTCCATGCAGGTTGGTCCCTGGGCCCCGAAGTCGACTGGGGGCAGCGGCCCGATaGGGCTCGACGGGGTGGTCA +
Preference number: 4 (lower is better)
Translates to: RVRFHSPCRLVPGPRSRLGAAAR*GSTGWS
Trigger: TGACCACCCCGTCGAGCCCCATCGGGCCGCTGCCCC...CAGTCGACTTCGGGGCCCAGGGACCAACCTGCATGGACTGTGAAACCTCACCCT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000395145.3
CDS-3UTR GCA 90 bp TCCGAGGCAAGGCTGCACGCTGGATGGCCTGGTGCGCGCTCCAGCTCGCGGTGGAAGGAACAGCACGCCTaGCACGATGGTGATCTTGGC +
Preference number: 4 (lower is better)
Translates to: SEARLHAGWPGARSSSRWKEQHA*HDGDLG
Trigger: GCCAAGATCACCATCGTGGCAGGCGTGCTGTTCCTT...CCACCGCGAGCTGGAGCGCGCACCAGGCCATCCAGCGTGCAGCCTTGCCTCGGA
66% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000395145.3
CDS-3UTR GCA 90 bp GGCAGCGGCCCGATGGGGCTCGACGGGGTGGTCAAGTATTGGCGGTCACCCAGGAGGTTTCACAGTCCATaGAGGTTGGTCCCTGGGCCC +
Preference number: 4 (lower is better)
Translates to: GSGPMGLDGVVKYWRSPRRFHSP*RLVPGP
Trigger: GGGCCCAGGGACCAACCTGCATGGACTGTGAAACCT...CCTGGGTGACCGCCAATACTTGACCACCCCGTCGAGCCCCATCGGGCCGCTGCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000395145.3
CDS-3UTR CCA 90 bp AGGGTGAGGTTTCACAGTCCATGCAGGTTGGTCCCTGGGCCCCGAAGTCGACTGCTGCCTGTGGCTTTGTaGGCGGGCGGCGGCGACTGG +
Preference number: 4 (lower is better)
Translates to: RVRFHSPCRLVPGPRSRLLPVAL*AGGGDW
Trigger: CCAGTCGCCGCCGCCCGCCCACAAAGCCACAGGCAG...CAGTCGACTTCGGGGCCCAGGGACCAACCTGCATGGACTGTGAAACCTCACCCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000395145.3
CDS-3UTR TCA 90 bp AGGGTGAGGTTTCACAGTCCATGCAGGTTGGTCCCTGGGCCCCGAAGTCGACTGACACCGGCACGAGGGTaGGCAGGGCGGCGAGAAGGA +
Preference number: 4 (lower is better)
Translates to: RVRFHSPCRLVPGPRSRLTPARG*AGRREG
Trigger: TCCTTCTCGCCGCCCTGCTCACCCTCGTGCCGGTGT...CAGTCGACTTCGGGGCCCAGGGACCAACCTGCATGGACTGTGAAACCTCACCCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000395145.3
CDS-3UTR GCA 90 bp GGCAGCGGCCCGATGGGGCTCGACGGGGTGGTCAAGTATTGGCGGTCACCCAGGCTTAGACGTAGTCCTTaGGGTCGTAGCCTGTGCCCA +
Preference number: 4 (lower is better)
Translates to: GSGPMGLDGVVKYWRSPRLRRSP*GRSLCP
Trigger: TGGGCACAGGCTACGACCGCAAGGACTACGTCTAAG...CCTGGGTGACCGCCAATACTTGACCACCCCGTCGAGCCCCATCGGGCCGCTGCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000395145.3
CDS-3UTR GCA 90 bp AAGGGTGAGGTTTCACAGTCCATGCAGGTTGGTCCCTGGGCCCCGAAGTCGACTCGCTGGATGGCCTGGTaGGCGCTCCAGCTCGCGGTG +
Preference number: 4 (lower is better)
Translates to: KGEVSQSMQVGPWAPKSTRWMAW*ALQLAV
Trigger: CACCGCGAGCTGGAGCGCGCACCAGGCCATCCAGCG...AGTCGACTTCGGGGCCCAGGGACCAACCTGCATGGACTGTGAAACCTCACCCTT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000395145.3
CDS-3UTR CCA 90 bp TGGCCTCCGAGGCAAGGCTGCACGCTGGATGGCCTGGTGCGCGCTCCAGCTCGCAGTAGACGACCTTGGTaGCCGTGTACTTCTTCTCGC +
Preference number: 4 (lower is better)
Translates to: WPPRQGCTLDGLVRAPARSRRPW*PCTSSR
Trigger: GCGAGAAGAAGTACACGGCCACCAAGGTCGTCTACT...GCGAGCTGGAGCGCGCACCAGGCCATCCAGCGTGCAGCCTTGCCTCGGAGGCCA
64% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000395145.3
CDS-3UTR GCA 90 bp GGCAAGGCTGCACGCTGGATGGCCTGGTGCGCGCTCCAGCTCGCGGTGGTGGTGTTGAAAAATATCAAGTaGCCCTTCCAGGGCTGCCGG +
Preference number: 4 (lower is better)
Translates to: GKAARWMAWCALQLAVVVLKNIK*PFQGCR
Trigger: CCGGCAGCCCTGGAAGGGGCACTTGATATTTTTCAA...CACCACCACCGCGAGCTGGAGCGCGCACCAGGCCATCCAGCGTGCAGCCTTGCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000395145.3
CDS-3UTR CCA 90 bp GGCTCGACGGGGTGGTCAAGTATTGGCGGTCACCCAGGCCCCGTGCTCCAGAAGGTACTTCTTCTCGCGTaGGGGACACGAGCAGCAGAG +
Preference number: 4 (lower is better)
Translates to: GSTGWSSIGGHPGPVLQKVLLLA*GTRAAE
Trigger: CTCTGCTGCTCGTGTCCCCCACGCGAGAAGAAGTAC...CTTCTGGAGCACGGGGCCTGGGTGACCGCCAATACTTGACCACCCCGTCGAGCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000395145.3
CDS-3UTR CCA 90 bp ACGGGGTGGTCAAGTATTGGCGGTCACCCAGGCCCCGTGCTCCAGAAGGGTGAGTGGGGCTCGACGGGGTaGTCAAGTATTGGCGGTCAC +
Preference number: 4 (lower is better)
Translates to: TGWSSIGGHPGPVLQKGEWGSTG*SSIGGH
Trigger: GTGACCGCCAATACTTGACCACCCCGTCGAGCCCCA...CTCACCCTTCTGGAGCACGGGGCCTGGGTGACCGCCAATACTTGACCACCCCGT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENST00000395145.3
CDS-3UTR TCA 90 bp GGCTCGACGGGGTGGTCAAGTATTGGCGGTCACCCAGGCCCCGTGCTCCAGAAGCGTGCTCCAGAAGGGTaGGGTTTCACAGTCCATGCA +
Preference number: 4 (lower is better)
Translates to: GSTGWSSIGGHPGPVLQKRAPEG*GFTVHA
Trigger: TGCATGGACTGTGAAACCTCACCCTTCTGGAGCACG...CTTCTGGAGCACGGGGCCTGGGTGACCGCCAATACTTGACCACCCCGTCGAGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000395145.3
CDS-3UTR CCA 90 bp CTGGATGGCCTGGTGCGCGCTCCAGCTCGCGGTGGTGGTGGTGGTGTTGGTGGTCGGAGTAGACGACCTTaGTGGCCGTGTACTTCTTCT +
Preference number: 4 (lower is better)
Translates to: LDGLVRAPARGGGGGVGGRSRRP*WPCTSS
Trigger: AGAAGAAGTACACGGCCACCAAGGTCGTCTACTCCG...ACCACCAACACCACCACCACCACCGCGAGCTGGAGCGCGCACCAGGCCATCCAG
62% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000395145.3
CDS GCA 90 bp CACGGCCAGCGCGGTGCCCGTGATCTCCAGGCCCATGGACATGGCTaGCGCGGCAAGGCCCGCTCCACCGGGTGGCTCCGGGTGCGGGGA +
Preference number: 5 (lower is better)
Translates to: HGQRGARDLQAHGHG*RGKARSTGWLRVRG
Trigger: TCCCCGCACCCGGAGCCACCCGGTGGAGCGGGCCTTGCCGCGGCAGCCATGTCCATGGGCCTGGAGATCACGGGCACCGCGCTGGCCGTG
76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000395145.3
CDS-3UTR CAA 90 bp GAGGCAAGGCTGCACGCTGGATGGCCTGGTGCGCGCTCCAGCTCGCGGTGGTGGTCGTCCTGCACGCAGTaGGTGCACTGGGCGCCCACC +
Preference number: 5 (lower is better)
Translates to: EARLHAGWPGARSSSRWWSSCTQ*VHWAPT
Trigger: GGTGGGCGCCCAGTGCACCAACTGCGTGCAGGACGA...CCACCACCGCGAGCTGGAGCGCGCACCAGGCCATCCAGCGTGCAGCCTTGCCTC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000395145.3
CDS CCA 90 bp GGCTGGCTCCCGGGCCGGTGGAGCGCGGCGCGGAGTAGACGACCTTaGTGGCCGTGTACTTCTTCTCGCGTGGGGGACACGAGCAGCAGA +
Preference number: 5 (lower is better)
Translates to: GWLPGRWSAARSRRP*WPCTSSRVGDTSSR
Trigger: TCTGCTGCTCGTGTCCCCCACGCGAGAAGAAGTACACGGCCACCAAGGTCGTCTACTCCGCGCCGCGCTCCACCGGCCCGGGAGCCAGCC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000395145.3
CDS-3UTR CAA 90 bp GGTCCCTGGGCCCCGAAGTCGACTGCCCGGCCCGCAAAGCCGTGGCTGCTGGGGATGGTGATCTTGGCCTaGGCCGTGTCGTCCTGCACG +
Preference number: 5 (lower is better)
Translates to: GPWAPKSTARPAKPWLLGMVILA*AVSSCT
Trigger: CGTGCAGGACGACACGGCCAAGGCCAAGATCACCAT...CCCCAGCAGCCACGGCTTTGCGGGCCGGGCAGTCGACTTCGGGGCCCAGGGACC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000395145.3
CDS-3UTR CAA 90 bp TGGTCCCTGGGCCCCGAAGTCGACTGCCCGGCCCGCAAAGCCGTGGCTGCTGGGGCCACGATGGTGATCTaGGCCTTGGCCGTGTCGTCC +
Preference number: 5 (lower is better)
Translates to: WSLGPEVDCPARKAVAAGATMVI*ALAVSS
Trigger: GGACGACACGGCCAAGGCCAAGATCACCATCGTGGC...CCCAGCAGCCACGGCTTTGCGGGCCGGGCAGTCGACTTCGGGGCCCAGGGACCA
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000395145.3
CDS GCA 90 bp TCCCTGCGTCTGTCCCTTAGACGTAGTCCTTGCGGTCGTAGCCTGTaGCCAGGCTGGCTCCCGGGCCGGTGGAGCGCGGCGCGGAGTAGA +
Preference number: 5 (lower is better)
Translates to: SLRLSLRRSPCGRSL*PGWLPGRWSAARSR
Trigger: TCTACTCCGCGCCGCGCTCCACCGGCCCGGGAGCCAGCCTGGGCACAGGCTACGACCGCAAGGACTACGTCTAAGGGACAGACGCAGGGA
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000395145.3
CDS GCA 90 bp GGTGGTGGTGGGGTCTCCCTGCGTCTGTCCCTTAGACGTAGTCCTTaGGGTCGTAGCCTGTGCCCAGGCTGGCTCCCGGGCCGGTGGAGC +
Preference number: 5 (lower is better)
Translates to: GGGGVSLRLSLRRSP*GRSLCPGWLPGRWS
Trigger: GCTCCACCGGCCCGGGAGCCAGCCTGGGCACAGGCTACGACCGCAAGGACTACGTCTAAGGGACAGACGCAGGGAGACCCCACCACCACC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000395145.3
CDS CCA 90 bp TGGCTCCCGGGCCGGTGGAGCGCGGCGCGGAGTAGACGACCTTGGTaGCCGTGTACTTCTTCTCGCGTGGGGGACACGAGCAGCAGAGCA +
Preference number: 5 (lower is better)
Translates to: WLPGRWSAARSRRPW*PCTSSRVGDTSSRA
Trigger: TGCTCTGCTGCTCGTGTCCCCCACGCGAGAAGAAGTACACGGCCACCAAGGTCGTCTACTCCGCGCCGCGCTCCACCGGCCCGGGAGCCA
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000395145.3
CDS CCA 90 bp AGTCCTTGCGGTCGTAGCCTGTGCCCAGGCTGGCTCCCGGGCCGGTaGAGCGCGGCGCGGAGTAGACGACCTTGGTGGCCGTGTACTTCT +
Preference number: 5 (lower is better)
Translates to: SPCGRSLCPGWLPGR*SAARSRRPWWPCTS
Trigger: AGAAGTACACGGCCACCAAGGTCGTCTACTCCGCGCCGCGCTCCACCGGCCCGGGAGCCAGCCTGGGCACAGGCTACGACCGCAAGGACT
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000395145.3
CDS CCA 90 bp CTGTCCCTTAGACGTAGTCCTTGCGGTCGTAGCCTGTGCCCAGGCTaGCTCCCGGGCCGGTGGAGCGCGGCGCGGAGTAGACGACCTTGG +
Preference number: 5 (lower is better)
Translates to: LSLRRSPCGRSLCPG*LPGRWSAARSRRPW
Trigger: CCAAGGTCGTCTACTCCGCGCCGCGCTCCACCGGCCCGGGAGCCAGCCTGGGCACAGGCTACGACCGCAAGGACTACGTCTAAGGGACAG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000395145.3
CDS-3UTR CAA 90 bp CCGAGGCAAGGCTGCACGCTGGATGGCCTGGTGCGCGCTCCAGCTCGCGGTGGTCACAGTCCATGCAGGTaGGTCCCTGGGCCCCGAAGT +
Preference number: 5 (lower is better)
Translates to: PRQGCTLDGLVRAPARGGHSPCR*VPGPRS
Trigger: ACTTCGGGGCCCAGGGACCAACCTGCATGGACTGTG...ACCACCGCGAGCTGGAGCGCGCACCAGGCCATCCAGCGTGCAGCCTTGCCTCGG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000395145.3
CDS GCA 90 bp GTGGTGGTGGTGGTGTTGGTGGTGGTGGTGGTGGTGGGGTCTCCCTaGGTCTGTCCCTTAGACGTAGTCCTTGCGGTCGTAGCCTGTGCC +
Preference number: 5 (lower is better)
Translates to: VVVVVLVVVVVVGSP*VCPLDVVLAVVACA
Trigger: GGCACAGGCTACGACCGCAAGGACTACGTCTAAGGGACAGACGCAGGGAGACCCCACCACCACCACCACCACCAACACCACCACCACCAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000395145.3
CDS-3UTR CAA 90 bp AAGGGTGAGGTTTCACAGTCCATGCAGGTTGGTCCCTGGGCCCCGAAGTCGACTCGGGGTGGTCAAGTATaGGCGGTCACCCAGGCCCCG +
Preference number: 5 (lower is better)
Translates to: KGEVSQSMQVGPWAPKSTRGGQV*AVTQAP
Trigger: CGGGGCCTGGGTGACCGCCAATACTTGACCACCCCG...AGTCGACTTCGGGGCCCAGGGACCAACCTGCATGGACTGTGAAACCTCACCCTT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000395145.3
CDS-3UTR CAA 90 bp GGTGAGGTTTCACAGTCCATGCAGGTTGGTCCCTGGGCCCCGAAGTCGACTGCCAACGAAAGGCTTTTATaGAAAAATATCAAGTGCCCC +
Preference number: 5 (lower is better)
Translates to: GEVSQSMQVGPWAPKSTANERLL*KNIKCP
Trigger: GGGGCACTTGATATTTTTCAATAAAAGCCTTTCGTT...GGCAGTCGACTTCGGGGCCCAGGGACCAACCTGCATGGACTGTGAAACCTCACC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000395145.3
CDS GCA 72 bp GGCTCCATACGCTCTCGCCGCGGCTGCGCCTGCACCTaGCTGTGGCTTTGTGGGCGGGCGGCGGCGACTGGG +
Preference number: 6 (lower is better)
Translates to: GSIRSRRGCACT*LWLCGRAAATG
Trigger: CCCAGTCGCCGCCGCCCGCCCACAAAGCCACAGGCAGGTGCAGGCGCAGCCGCGGCGAGAGCGTATGGAGCC
75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000395145.3
CDS CCA 72 bp GGTCGTAGCCTGTGCCCAGGCTGGCTCCCGGGCCGGTaGAGCGCGGCGCGGAGTAGACGACCTTGGTGGCCG +
Preference number: 6 (lower is better)
Translates to: GRSLCPGWLPGR*SAARSRRPWWP
Trigger: CGGCCACCAAGGTCGTCTACTCCGCGCCGCGCTCCACCGGCCCGGGAGCCAGCCTGGGCACAGGCTACGACC
75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000395145.3
CDS CCA 72 bp GCCTTGGCCGTGTCGTCCTGCACGCAGTTGGTGCACTaGGCGCCCACCAGCGCCACTAGCAGCCCGAAGGCG +
Preference number: 6 (lower is better)
Translates to: ALAVSSCTQLVH*APTSATSSPKA
Trigger: CGCCTTCGGGCTGCTAGTGGCGCTGGTGGGCGCCCAGTGCACCAACTGCGTGCAGGACGACACGGCCAAGGC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000395145.3
CDS CCA 72 bp CCGGGCCGGTGGAGCGCGGCGCGGAGTAGACGACCTTaGTGGCCGTGTACTTCTTCTCGCGTGGGGGACACG +
Preference number: 6 (lower is better)
Translates to: PGRWSAARSRRP*WPCTSSRVGDT
Trigger: CGTGTCCCCCACGCGAGAAGAAGTACACGGCCACCAAGGTCGTCTACTCCGCGCCGCGCTCCACCGGCCCGG
71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000395145.3
CDS CCA 72 bp AGACGTAGTCCTTGCGGTCGTAGCCTGTGCCCAGGCTaGCTCCCGGGCCGGTGGAGCGCGGCGCGGAGTAGA +
Preference number: 6 (lower is better)
Translates to: RRSPCGRSLCPG*LPGRWSAARSR
Trigger: TCTACTCCGCGCCGCGCTCCACCGGCCCGGGAGCCAGCCTGGGCACAGGCTACGACCGCAAGGACTACGTCT
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000395145.3
CDS CCA 72 bp GGCCGGTGGAGCGCGGCGCGGAGTAGACGACCTTGGTaGCCGTGTACTTCTTCTCGCGTGGGGGACACGAGC +
Preference number: 6 (lower is better)
Translates to: GRWSAARSRRPW*PCTSSRVGDTS
Trigger: GCTCGTGTCCCCCACGCGAGAAGAAGTACACGGCCACCAAGGTCGTCTACTCCGCGCCGCGCTCCACCGGCC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000395145.3
CDS GCA 72 bp GGGGTCTCCCTGCGTCTGTCCCTTAGACGTAGTCCTTaGGGTCGTAGCCTGTGCCCAGGCTGGCTCCCGGGC +
Preference number: 6 (lower is better)
Translates to: GVSLRLSLRRSP*GRSLCPGWLPG
Trigger: GCCCGGGAGCCAGCCTGGGCACAGGCTACGACCGCAAGGACTACGTCTAAGGGACAGACGCAGGGAGACCCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000395145.3
CDS CCA 72 bp CGCTCCAGCTCGCGGTGGTGGTGGTGGTGTTGGTGGTaGTGGTGGTGGTGGGGTCTCCCTGCGTCTGTCCCT +
Preference number: 6 (lower is better)
Translates to: RSSSRWWWWCWW*WWWWGLPASVP
Trigger: AGGGACAGACGCAGGGAGACCCCACCACCACCACCACCACCAACACCACCACCACCACCGCGAGCTGGAGCG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000395145.3
CDS CAA 90 bp GCGGCGAGAAGGAACAGCACGCCTGCCACGATGGTGATCTTGGCCTaGGCCGTGTCGTCCTGCACGCAGTTGGTGCACTGGGCGCCCACC +
Preference number: 6 (lower is better)
Translates to: AARRNSTPATMVILA*AVSSCTQLVHWAPT
Trigger: GGTGGGCGCCCAGTGCACCAACTGCGTGCAGGACGACACGGCCAAGGCCAAGATCACCATCGTGGCAGGCGTGCTGTTCCTTCTCGCCGC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000395145.3
CDS CAA 90 bp TGGATGGCCTGGTGCGCGCTCCAGCTCGCGGTGGTGGTGGTGGTGTaGGTGGTGGTGGTGGTGGTGGGGTCTCCCTGCGTCTGTCCCTTA +
Preference number: 6 (lower is better)
Translates to: WMAWCALQLAVVVVV*VVVVVVGSPCVCPL
Trigger: TAAGGGACAGACGCAGGGAGACCCCACCACCACCACCACCACCAACACCACCACCACCACCGCGAGCTGGAGCGCGCACCAGGCCATCCA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000395145.3
CDS CAA 90 bp AGCAGGGCGGCGAGAAGGAACAGCACGCCTGCCACGATGGTGATCTaGGCCTTGGCCGTGTCGTCCTGCACGCAGTTGGTGCACTGGGCG +
Preference number: 6 (lower is better)
Translates to: SRAARRNSTPATMVI*ALAVSSCTQLVHWA
Trigger: CGCCCAGTGCACCAACTGCGTGCAGGACGACACGGCCAAGGCCAAGATCACCATCGTGGCAGGCGTGCTGTTCCTTCTCGCCGCCCTGCT
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000395145.3
CDS CAA 72 bp AGGAACAGCACGCCTGCCACGATGGTGATCTTGGCCTaGGCCGTGTCGTCCTGCACGCAGTTGGTGCACTGG +
Preference number: 6 (lower is better)
Translates to: RNSTPATMVILA*AVSSCTQLVHW
Trigger: CCAGTGCACCAACTGCGTGCAGGACGACACGGCCAAGGCCAAGATCACCATCGTGGCAGGCGTGCTGTTCCT
62% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000395145.3
CDS CAA 72 bp GCGAGAAGGAACAGCACGCCTGCCACGATGGTGATCTaGGCCTTGGCCGTGTCGTCCTGCACGCAGTTGGTG +
Preference number: 6 (lower is better)
Translates to: ARRNSTPATMVI*ALAVSSCTQLV
Trigger: CACCAACTGCGTGCAGGACGACACGGCCAAGGCCAAGATCACCATCGTGGCAGGCGTGCTGTTCCTTCTCGC
62% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000395145.3
CDS GCA 72 bp GTGGTGTTGGTGGTGGTGGTGGTGGTGGGGTCTCCCTaGGTCTGTCCCTTAGACGTAGTCCTTGCGGTCGTA +
Preference number: 6 (lower is better)
Translates to: VVLVVVVVVGSP*VCPLDVVLAVV
Trigger: TACGACCGCAAGGACTACGTCTAAGGGACAGACGCAGGGAGACCCCACCACCACCACCACCACCAACACCAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000395145.3