Pregenerated sensors for CLDN20 (Homo sapiens)
Ensembl gene IDs: ENSG00000171217Ensembl transcript IDs: ENST00000367165.3
Found 24 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | GACAGAACACACGCCAGGACCATGGTGGCTCTCGCAGCCTGCACGTaGATGGGGAGGGACAGAATGGAGTGTTTCAGGGCACAGCTGAAC | + |
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Preference number: 5 (lower is better) Translates to: DRTHARTMVALAACT*MGRDRMECFRAQLN Trigger: GTTCAGCTGTGCCCTGAAACACTCCATTCTGTCCCTCCCCATCCACGTGCAGGCTGCGAGAGCCACCATGGTCCTGGCGTGTGTTCTGTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000367165.3 |
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| CDS CCA 90 bp | TGGAAGTGCAGATCCCCAAAGCAGACAGAACACACGCCAGGACCATaGTGGCTCTCGCAGCCTGCACGTGGATGGGGAGGGACAGAATGG | + |
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Preference number: 5 (lower is better) Translates to: WKCRSPKQTEHTPGP*WLSQPARGWGGTEW Trigger: CCATTCTGTCCCTCCCCATCCACGTGCAGGCTGCGAGAGCCACCATGGTCCTGGCGTGTGTTCTGTCTGCTTTGGGGATCTGCACTTCCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000367165.3 |
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| CDS CCA 90 bp | AAGTGCAGATCCCCAAAGCAGACAGAACACACGCCAGGACCATGGTaGCTCTCGCAGCCTGCACGTGGATGGGGAGGGACAGAATGGAGT | + |
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Preference number: 5 (lower is better) Translates to: KCRSPKQTEHTPGPW*LSQPARGWGGTEWS Trigger: ACTCCATTCTGTCCCTCCCCATCCACGTGCAGGCTGCGAGAGCCACCATGGTCCTGGCGTGTGTTCTGTCTGCTTTGGGGATCTGCACTT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000367165.3 |
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| CDS GCA 90 bp | AGACACTGGAGGGTGGGGAAACCAAGCATCCGGAGGCACTCATCTTaGTCCGTTGTTTTACCCGACAGTGAAGTGGCTCTCCCAAGCCCC | + |
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Preference number: 5 (lower is better) Translates to: RHWRVGKPSIRRHSS*SVVLPDSEVALPSP Trigger: GGGGCTTGGGAGAGCCACTTCACTGTCGGGTAAAACAACGGAGCAAGATGAGTGCCTCCGGATGCTTGGTTTCCCCACCCTCCAGTGTCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000367165.3 |
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| CDS GCA 90 bp | CTCTGTCCCCTCCTAAGCGAGTACATTTCATTCCTACTGTGGAAGTaGAGATCCCCAAAGCAGACAGAACACACGCCAGGACCATGGTGG | + |
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Preference number: 5 (lower is better) Translates to: LCPLLSEYISFLLWK*RSPKQTEHTPGPWW Trigger: CCACCATGGTCCTGGCGTGTGTTCTGTCTGCTTTGGGGATCTGCACTTCCACAGTAGGAATGAAATGTACTCGCTTAGGAGGGGACAGAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000367165.3 |
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| CDS TCA 90 bp | ACGTACAGTCCATCCAGAGCCCGTGCAGCTGTACAATGGCTGTTATaGTGTTGGAGTCCACATCCACATTCACCTTCCAGTTGGGCAGCA | + |
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Preference number: 5 (lower is better) Translates to: TYSPSRARAAVQWLL*CWSPHPHSPSSWAA Trigger: TGCTGCCCAACTGGAAGGTGAATGTGGATGTGGACTCCAACATCATAACAGCCATTGTACAGCTGCACGGGCTCTGGATGGACTGTACGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000367165.3 |
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| CDS CCA 90 bp | ATTAGCTTGGTGGAGGTACTTGAAGAGCAAGCAGACACTGGAGGGTaGGGAAACCAAGCATCCGGAGGCACTCATCTTGCTCCGTTGTTT | + |
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Preference number: 5 (lower is better) Translates to: ISLVEVLEEQADTGG*GNQASGGTHLAPLF Trigger: AAACAACGGAGCAAGATGAGTGCCTCCGGATGCTTGGTTTCCCCACCCTCCAGTGTCTGCTTGCTCTTCAAGTACCTCCACCAAGCTAAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000367165.3 |
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| CDS CCA 90 bp | TGTGTTAGAGATAGGCTGCTGTGTGGGTGGGTCGAGTCTAGCTTCTaGATTCCTTTTTATACAGGAGGTGCAGAAAATCATGCCAGAGAT | + |
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Preference number: 5 (lower is better) Translates to: CVRDRLLCGWVESSF*IPFYTGGAENHARD Trigger: ATCTCTGGCATGATTTTCTGCACCTCCTGTATAAAAAGGAATCCAGAAGCTAGACTCGACCCACCCACACAGCAGCCTATCTCTAACACA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000367165.3 |
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| CDS GCA 90 bp | TATACAGGAGGTGCAGAAAATCATGCCAGAGATAAACAACAGCATTaGAGAAATGAATCCGATATAGATAGCTCCTCCAGGTTCATGTTT | + |
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Preference number: 5 (lower is better) Translates to: YTGGAENHARDKQQH*RNESDIDSSSRFMF Trigger: AAACATGAACCTGGAGGAGCTATCTATATCGGATTCATTTCTGCAATGCTGTTGTTTATCTCTGGCATGATTTTCTGCACCTCCTGTATA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000367165.3 |
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| CDS CCA 72 bp | TCCCCAAAGCAGACAGAACACACGCCAGGACCATGGTaGCTCTCGCAGCCTGCACGTGGATGGGGAGGGACA | + |
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Preference number: 6 (lower is better) Translates to: SPKQTEHTPGPW*LSQPARGWGGT Trigger: TGTCCCTCCCCATCCACGTGCAGGCTGCGAGAGCCACCATGGTCCTGGCGTGTGTTCTGTCTGCTTTGGGGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000367165.3 |
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| CDS CCA 72 bp | AGATCCCCAAAGCAGACAGAACACACGCCAGGACCATaGTGGCTCTCGCAGCCTGCACGTGGATGGGGAGGG | + |
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Preference number: 6 (lower is better) Translates to: RSPKQTEHTPGP*WLSQPARGWGG Trigger: CCCTCCCCATCCACGTGCAGGCTGCGAGAGCCACCATGGTCCTGGCGTGTGTTCTGTCTGCTTTGGGGATCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000367165.3 |
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| CDS TCA 72 bp | GAGGCACTCATCTTGCTCCGTTGTTTTACCCGACAGTaGAGTGGCTCTCCCAAGCCCCTGTCCTCCTGCGTT | + |
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Preference number: 6 (lower is better) Translates to: EALILLRCFTRQ*SGSPKPLSSCV Trigger: AACGCAGGAGGACAGGGGCTTGGGAGAGCCACTTCACTGTCGGGTAAAACAACGGAGCAAGATGAGTGCCTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000367165.3 |
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| CDS GCA 72 bp | AGGGTGGGGAAACCAAGCATCCGGAGGCACTCATCTTaGTCCGTTGTTTTACCCGACAGTGAAGTGGCTCTC | + |
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Preference number: 6 (lower is better) Translates to: RVGKPSIRRHSS*SVVLPDSEVAL Trigger: GAGAGCCACTTCACTGTCGGGTAAAACAACGGAGCAAGATGAGTGCCTCCGGATGCTTGGTTTCCCCACCCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000367165.3 |
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| CDS CCA 72 bp | GTGGAGGTACTTGAAGAGCAAGCAGACACTGGAGGGTaGGGAAACCAAGCATCCGGAGGCACTCATCTTGCT | + |
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Preference number: 6 (lower is better) Translates to: VEVLEEQADTGG*GNQASGGTHLA Trigger: AGCAAGATGAGTGCCTCCGGATGCTTGGTTTCCCCACCCTCCAGTGTCTGCTTGCTCTTCAAGTACCTCCAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000367165.3 |
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| CDS CAA 72 bp | GGAAACCAAGCATCCGGAGGCACTCATCTTGCTCCGTaGTTTTACCCGACAGTGAAGTGGCTCTCCCAAGCC | + |
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Preference number: 6 (lower is better) Translates to: GNQASGGTHLAP*FYPTVKWLSQA Trigger: GGCTTGGGAGAGCCACTTCACTGTCGGGTAAAACAACGGAGCAAGATGAGTGCCTCCGGATGCTTGGTTTCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000367165.3 |
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| CDS CAA 90 bp | TGTAACCTCGAGGCCCGTGATGTCCTAAAGTGGACTGTCATTAGCTaGGTGGAGGTACTTGAAGAGCAAGCAGACACTGGAGGGTGGGGA | + |
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Preference number: 6 (lower is better) Translates to: CNLEARDVLKWTVIS*VEVLEEQADTGGWG Trigger: TCCCCACCCTCCAGTGTCTGCTTGCTCTTCAAGTACCTCCACCAAGCTAATGACAGTCCACTTTAGGACATCACGGGCCTCGAGGTTACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000367165.3 |
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| CDS CAA 90 bp | CAGTCCATCCAGAGCCCGTGCAGCTGTACAATGGCTGTTATGATGTaGGAGTCCACATCCACATTCACCTTCCAGTTGGGCAGCAGAGTG | + |
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Preference number: 6 (lower is better) Translates to: QSIQSPCSCTMAVMM*ESTSTFTFQLGSRV Trigger: CACTCTGCTGCCCAACTGGAAGGTGAATGTGGATGTGGACTCCAACATCATAACAGCCATTGTACAGCTGCACGGGCTCTGGATGGACTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000367165.3 |
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| CDS GCA 72 bp | TGTCCTCCTGCGTTCCATTTTGTGGTGCCTATAGCCTaGAAGATGCCATATGCTTCCTGTTCCCAACCACCC | + |
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Preference number: 6 (lower is better) Translates to: CPPAFHFVVPIA*KMPYASCSQPP Trigger: GGGTGGTTGGGAACAGGAAGCATATGGCATCTTGCAGGCTATAGGCACCACAAAATGGAACGCAGGAGGACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000367165.3 |
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| CDS CAA 90 bp | ATGGCTGTTATGATGTTGGAGTCCACATCCACATTCACCTTCCAGTaGGGCAGCAGAGTGGCTGTGAGCACTCCAGAGACCCCAGATAAG | + |
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Preference number: 6 (lower is better) Translates to: MAVMMLESTSTFTFQ*GSRVAVSTPETPDK Trigger: CTTATCTGGGGTCTCTGGAGTGCTCACAGCCACTCTGCTGCCCAACTGGAAGGTGAATGTGGATGTGGACTCCAACATCATAACAGCCAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000367165.3 |
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| CDS TCA 72 bp | CCATCCAGAGCCCGTGCAGCTGTACAATGGCTGTTATaGTGTTGGAGTCCACATCCACATTCACCTTCCAGT | + |
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Preference number: 6 (lower is better) Translates to: PSRARAAVQWLL*CWSPHPHSPSS Trigger: ACTGGAAGGTGAATGTGGATGTGGACTCCAACATCATAACAGCCATTGTACAGCTGCACGGGCTCTGGATGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000367165.3 |
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| CDS CAA 72 bp | GAGGCCCGTGATGTCCTAAAGTGGACTGTCATTAGCTaGGTGGAGGTACTTGAAGAGCAAGCAGACACTGGA | + |
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Preference number: 6 (lower is better) Translates to: EARDVLKWTVIS*VEVLEEQADTG Trigger: TCCAGTGTCTGCTTGCTCTTCAAGTACCTCCACCAAGCTAATGACAGTCCACTTTAGGACATCACGGGCCTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000367165.3 |
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| CDS GCA 72 bp | GGTGCAGAAAATCATGCCAGAGATAAACAACAGCATTaGAGAAATGAATCCGATATAGATAGCTCCTCCAGG | + |
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Preference number: 6 (lower is better) Translates to: GAENHARDKQQH*RNESDIDSSSR Trigger: CCTGGAGGAGCTATCTATATCGGATTCATTTCTGCAATGCTGTTGTTTATCTCTGGCATGATTTTCTGCACC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000367165.3 |
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| CDS TCA 72 bp | TGCTTTCTGGAACTGTCAGATCCAGAAAGTTTGCTATaGTCTCCTTTGTGTACCACACTGTCGAGATTAAAC | + |
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Preference number: 6 (lower is better) Translates to: CFLELSDPESLL*SPLCTTLSRLN Trigger: GTTTAATCTCGACAGTGTGGTACACAAAGGAGATCATAGCAAACTTTCTGGATCTGACAGTTCCAGAAAGCA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000367165.3 |
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| CDS GCA 72 bp | TTTGTTGCTTTCTGGAACTGTCAGATCCAGAAAGTTTaGTATGATCTCCTTTGTGTACCACACTGTCGAGAT | + |
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Preference number: 6 (lower is better) Translates to: FVAFWNCQIQKV*YDLLCVPHCRD Trigger: ATCTCGACAGTGTGGTACACAAAGGAGATCATAGCAAACTTTCTGGATCTGACAGTTCCAGAAAGCAACAAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000367165.3 |
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