Pregenerated sensors for CLCNKA (Homo sapiens)
Ensembl gene IDs: ENSG00000186510Ensembl transcript IDs: ENST00000331433.5, ENST00000375692.5, ENST00000439316.6, ENST00000464764.5, ENST00000477360.2, ENST00000491433.1, ENST00000495784.1
Found 13 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | TGTCAGGAGCGTCACATCTGCAGCTCAAGTCCTCCTTCCCACACCTaGGTGATGAGGGCTTCATCACTGGCCTATGAGCTGGCTGTGTGG | + |
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Preference number: 5 (lower is better) Translates to: CQERHICSSSPPSHT*VMRASSLAYELAVW Trigger: CCACACAGCCAGCTCATAGGCCAGTGATGAAGCCCTCATCACTCAGGTGTGGGAAGGAGGACTTGAGCTGCAGATGTGACGCTCCTGACA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000464764.5 |
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| CDS TCA 90 bp | TGGGGTCCAAGGAAAGGGTCTGTGTTTGTGAAAAGCTCTCCTGGGTaGCTGGGATTCAAAGGACTGCATCATCTTTGTAGCTCCTTCTGT | + |
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Preference number: 5 (lower is better) Translates to: WGPRKGSVFVKSSPG*LGFKGLHHLCSSFC Trigger: ACAGAAGGAGCTACAAAGATGATGCAGTCCTTTGAATCCCAGTCACCCAGGAGAGCTTTTCACAAACACAGACCCTTTCCTTGGACCCCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000464764.5 |
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| CDS TCA 90 bp | ATCCCAAATCAAAATCCTGGGGTCCAAGGAAAGGGTCTGTGTTTGTaGAAAGCTCTCCTGGGTGACTGGGATTCAAAGGACTGCATCATC | + |
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Preference number: 5 (lower is better) Translates to: IPNQNPGVQGKGLCL*KALLGDWDSKDCII Trigger: GATGATGCAGTCCTTTGAATCCCAGTCACCCAGGAGAGCTTTTCACAAACACAGACCCTTTCCTTGGACCCCAGGATTTTGATTTGGGAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000464764.5 |
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| CDS GCA 72 bp | GAGGCCGAGGCAGAGCCAGGATTCCCAGCCCAGGTTTaGCTGGCTCCAAAGCCCGCAGGCTGTGCCACACGG | + |
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Preference number: 6 (lower is better) Translates to: EAEAEPGFPAQV*LAPKPAGCATR Trigger: CCGTGTGGCACAGCCTGCGGGCTTTGGAGCCAGGCAAACCTGGGCTGGGAATCCTGGCTCTGCCTCGGCCTC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000464764.5 ENST00000477360.2 |
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| CDS CCA 72 bp | CCGAGGCAGAGCCAGGATTCCCAGCCCAGGTTTGCCTaGCTCCAAAGCCCGCAGGCTGTGCCACACGGTCCC | + |
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Preference number: 6 (lower is better) Translates to: PRQSQDSQPRFA*LQSPQAVPHGP Trigger: GGGACCGTGTGGCACAGCCTGCGGGCTTTGGAGCCAGGCAAACCTGGGCTGGGAATCCTGGCTCTGCCTCGG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000464764.5 ENST00000477360.2 |
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| CDS CAA 72 bp | GGAGGCCGAGGCAGAGCCAGGATTCCCAGCCCAGGTTaGCCTGGCTCCAAAGCCCGCAGGCTGTGCCACACG | + |
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Preference number: 6 (lower is better) Translates to: GGRGRARIPSPG*PGSKARRLCHT Trigger: CGTGTGGCACAGCCTGCGGGCTTTGGAGCCAGGCAAACCTGGGCTGGGAATCCTGGCTCTGCCTCGGCCTCC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000464764.5 ENST00000477360.2 |
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| CDS TCA 72 bp | CACAGAGCCTCCTTTGCTCCCAGCTCCAGTGCACCCTaGGTGCCCACGGAAATCCCACGAGGCAGGCAGCGT | + |
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Preference number: 6 (lower is better) Translates to: HRASFAPSSSAP*VPTEIPRGRQR Trigger: ACGCTGCCTGCCTCGTGGGATTTCCGTGGGCACTCAGGGTGCACTGGAGCTGGGAGCAAAGGAGGCTCTGTG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000464764.5 |
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| CDS GCA 72 bp | GAGCCTCCTTTGCTCCCAGCTCCAGTGCACCCTGAGTaGCCACGGAAATCCCACGAGGCAGGCAGCGTGATC | + |
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Preference number: 6 (lower is better) Translates to: EPPLLPAPVHPE*PRKSHEAGSVI Trigger: GATCACGCTGCCTGCCTCGTGGGATTTCCGTGGGCACTCAGGGTGCACTGGAGCTGGGAGCAAAGGAGGCTC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000464764.5 |
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| CDS CAA 72 bp | CTAGGGCTGGCCCTCCCTTTCCTAGTAGCCAGCAGTTaGGAGCTGTACCGATTGGTCTTGATGAAGCTGAGG | + |
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Preference number: 6 (lower is better) Translates to: LGLALPFLVASS*ELYRLVLMKLR Trigger: CCTCAGCTTCATCAAGACCAATCGGTACAGCTCCAAACTGCTGGCTACTAGGAAAGGGAGGGCCAGCCCTAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000464764.5 |
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| CDS CCA 72 bp | TCACAGAGCCTCCTTTGCTCCCAGCTCCAGTGCACCTaGACAGGTATATGCTCTACCAATCATCACTCTCTC | + |
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Preference number: 6 (lower is better) Translates to: SQSLLCSQLQCT*TGICSTNHHSL Trigger: GAGAGAGTGATGATTGGTAGAGCATATACCTGTCCAGGTGCACTGGAGCTGGGAGCAAAGGAGGCTCTGTGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000495784.1 |
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| CDS CAA 72 bp | AGAGCGGAGTACACAGGCTTGCTAGTAGCCAGCAGTTaGGAGCTGTACCGATTGGTCTTGATGAAGCTGAGG | + |
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Preference number: 6 (lower is better) Translates to: RAEYTGLLVASS*ELYRLVLMKLR Trigger: CCTCAGCTTCATCAAGACCAATCGGTACAGCTCCAAACTGCTGGCTACTAGCAAGCCTGTGTACTCCGCTCT 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000331433.5 ENST00000375692.5 ENST00000439316.6 ENST00000491433.1 |
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| CDS TCA 72 bp | CAAAATCCTGGGGTCCAAGGAAAGGGTCTGTGTTTGTaGAAAGCTCTCCTGGGTGACTGGGATTCAAAGGAC | + |
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Preference number: 6 (lower is better) Translates to: QNPGVQGKGLCL*KALLGDWDSKD Trigger: GTCCTTTGAATCCCAGTCACCCAGGAGAGCTTTTCACAAACACAGACCCTTTCCTTGGACCCCAGGATTTTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000464764.5 |
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| CDS TCA 72 bp | AGGAAAGGGTCTGTGTTTGTGAAAAGCTCTCCTGGGTaGCTGGGATTCAAAGGACTGCATCATCTTTGTAGC | + |
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Preference number: 6 (lower is better) Translates to: RKGSVFVKSSPG*LGFKGLHHLCS Trigger: GCTACAAAGATGATGCAGTCCTTTGAATCCCAGTCACCCAGGAGAGCTTTTCACAAACACAGACCCTTTCCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000464764.5 |
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