Pregenerated sensors for CKS1B (Homo sapiens)
Ensembl gene IDs: ENSG00000173207Ensembl transcript IDs: ENST00000368436.1, ENST00000368439.5
Found 29 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | ACAGCCCCAGGGTGTCCCTTATTAGTTTTGCCTGGCAGCTGGGTGTCTGGTGTCATGAGGCAGGGGCTATaGTCAGGCTATATGTGGCCT | + |
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Preference number: 2 (lower is better) Translates to: TAPGCPLLVLPGSWVSGVMRQGL*SGYMWP Trigger: AGGCCACATATAGCCTGATCATAGCCCCTGCCTCAT...GACACCAGACACCCAGCTGCCAGGCAAAACTAATAAGGGACACCCTGGGGCTGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000368436.1 |
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| 3UTR-3UTR TCA 90 bp | TGTTTATACAGCCCCAGGGTGTCCCTTATTAGTTTTGCCTGGCAGCTGGGTGTCGTTTTCGATGGAGAATaGGGCAGGGGCTATGATCAG | + |
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Preference number: 2 (lower is better) Translates to: CLYSPRVSLISFAWQLGVVFDGE*GRGYDQ Trigger: CTGATCATAGCCCCTGCCTCATTCTCCATCGAAAAC...GACACCCAGCTGCCAGGCAAAACTAATAAGGGACACCCTGGGGCTGTATAAACA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENST00000368436.1 |
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| 3UTR-3UTR TCA 90 bp | TTGCTATGTTTATACAGCCCCAGGGTGTCCCTTATTAGTTTTGCCTGGCAGCTGAGAATACCCTCTGATTaGATGAAAGATTACAGGAGG | + |
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Preference number: 2 (lower is better) Translates to: LLCLYSPRVSLISFAWQLRIPSD*MKDYRR Trigger: CCTCCTGTAATCTTTCATTCAATCAGAGGGTATTCT...CAGCTGCCAGGCAAAACTAATAAGGGACACCCTGGGGCTGTATAAACATAGCAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000368436.1 |
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| 3UTR-3UTR TCA 90 bp | CCCTTATTAGTTTTGCCTGGCAGCTGGGTGTCTGGTGTCTTATCAATAAATATACAGGAGGTTTTTCAGTaGCAGGTTGTCTCTGAACTT | + |
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Preference number: 2 (lower is better) Translates to: PLLVLPGSWVSGVLSINIQEVFQ*QVVSEL Trigger: AAGTTCAGAGACAACCTGTCACTGAAAAACCTCCTG...TATATTTATTGATAAGACACCAGACACCCAGCTGCCAGGCAAAACTAATAAGGG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000368436.1 |
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| 3UTR CCA 72 bp | TTATACAGCCCCAGGGTGTCCCTTATTAGTTTTGCCTaGCAGCTGGGTGTCTGGTGTCTTATCAATAAATAT | + |
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Preference number: 3 (lower is better) Translates to: LYSPRVSLISFA*QLGVWCLINKY Trigger: ATATTTATTGATAAGACACCAGACACCCAGCTGCCAGGCAAAACTAATAAGGGACACCCTGGGGCTGTATAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000368436.1 |
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| 3UTR-3UTR CAA 90 bp | AAGCAGACCCAGAAGTCTGGACTGTCTGCCAAGTACAGAATTGTTAATATCAGTTTTTTCAGTGACAGGTaGTCTCTGAACTTCCCAGAT | + |
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Preference number: 3 (lower is better) Translates to: KQTQKSGLSAKYRIVNISFFSDR*SLNFPD Trigger: ATCTGGGAAGTTCAGAGACAACCTGTCACTGAAAAA...ACTGATATTAACAATTCTGTACTTGGCAGACAGTCCAGACTTCTGGGTCTGCTT 42% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 1 transcripts: ENST00000368436.1 |
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| 3UTR-3UTR CAA 90 bp | AAGTCTGGACTGTCTGCCAAGTACAGAATTGTTAATATCAGTTCTTTTGCTATGTGTCCCTTATTAGTTTaGCCTGGCAGCTGGGTGTCT | + |
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Preference number: 3 (lower is better) Translates to: KSGLSAKYRIVNISSFAMCPLLV*PGSWVS Trigger: AGACACCCAGCTGCCAGGCAAAACTAATAAGGGACA...CATAGCAAAAGAACTGATATTAACAATTCTGTACTTGGCAGACAGTCCAGACTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000368436.1 |
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| CDS-3UTR TCA 90 bp | ACAGCCCCAGGGTGTCCCTTATTAGTTTTGCCTGGCAGCTGGGTGTCTGGTGTCGTTTTCGATGGAGAATaGGGCAGGGGCTATGATCAG | + |
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Preference number: 4 (lower is better) Translates to: TAPGCPLLVLPGSWVSGVVFDGE*GRGYDQ Trigger: CTGATCATAGCCCCTGCCTCATTCTCCATCGAAAAC...GACACCAGACACCCAGCTGCCAGGCAAAACTAATAAGGGACACCCTGGGGCTGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENST00000368436.1 |
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| CDS-3UTR CCA 90 bp | TATGTTTATACAGCCCCAGGGTGTCCCTTATTAGTTTTGCCTGGCAGCTGGGTGGTTTTGCCTGGCAGCTaGGTGTCTGGTGTCTTATCA | + |
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Preference number: 4 (lower is better) Translates to: YVYTAPGCPLLVLPGSWVVLPGS*VSGVLS Trigger: TGATAAGACACCAGACACCCAGCTGCCAGGCAAAAC...CACCCAGCTGCCAGGCAAAACTAATAAGGGACACCCTGGGGCTGTATAAACATA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000368436.1 |
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| CDS-3UTR TCA 90 bp | TGTTTATACAGCCCCAGGGTGTCCCTTATTAGTTTTGCCTGGCAGCTGGGTGTCTACCCTCTGATTGAATaGAAGATTACAGGAGGTTTT | + |
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Preference number: 4 (lower is better) Translates to: CLYSPRVSLISFAWQLGVYPLIE*KITGGF Trigger: AAAACCTCCTGTAATCTTTCATTCAATCAGAGGGTA...GACACCCAGCTGCCAGGCAAAACTAATAAGGGACACCCTGGGGCTGTATAAACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000368436.1 |
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| CDS-3UTR TCA 90 bp | CCCTTATTAGTTTTGCCTGGCAGCTGGGTGTCTGGTGTCTTATCAATAAATATAATGAGGCAGGGGCTATaGTCAGGCTATATGTGGCCT | + |
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Preference number: 4 (lower is better) Translates to: PLLVLPGSWVSGVLSINIMRQGL*SGYMWP Trigger: AGGCCACATATAGCCTGATCATAGCCCCTGCCTCAT...TATATTTATTGATAAGACACCAGACACCCAGCTGCCAGGCAAAACTAATAAGGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000368436.1 |
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| CDS-3UTR GCA 90 bp | ACACATCCAAGAATGTTTTCGATGGAGAATGAGGCAGGGGCTATGATCAGGCTAGTTGTTTTTAGCCAGTaGACTGACCTGGTTCATGGA | + |
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Preference number: 4 (lower is better) Translates to: THPRMFSMENEAGAMIRLVVFSQ*TDLVHG Trigger: TCCATGAACCAGGTCAGTGCACTGGCTAAAAACAAC...TAGCCTGATCATAGCCCCTGCCTCATTCTCCATCGAAAACATTCTTGGATGTGT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000368436.1 |
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| 3UTR CAA 72 bp | TATGTTTATACAGCCCCAGGGTGTCCCTTATTAGTTTaGCCTGGCAGCTGGGTGTCTGGTGTCTTATCAATA | + |
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Preference number: 4 (lower is better) Translates to: YVYTAPGCPLLV*PGSWVSGVLSI Trigger: TATTGATAAGACACCAGACACCCAGCTGCCAGGCAAAACTAATAAGGGACACCCTGGGGCTGTATAAACATA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000368436.1 |
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| CDS-3UTR CCA 90 bp | CTTAGAAGCAGACCCAGAAGTCTGGACTGTCTGCCAAGTACAGAATTGTTAATACTTATTAGTTTTGCCTaGCAGCTGGGTGTCTGGTGT | + |
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Preference number: 4 (lower is better) Translates to: LRSRPRSLDCLPSTELLILISFA*QLGVWC Trigger: ACACCAGACACCCAGCTGCCAGGCAAAACTAATAAG...TATTAACAATTCTGTACTTGGCAGACAGTCCAGACTTCTGGGTCTGCTTCTAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000368436.1 |
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| CDS-3UTR TCA 90 bp | AAGCAGACCCAGAAGTCTGGACTGTCTGCCAAGTACAGAATTGTTAATATCAGTCAGGAGGTTTTTCAGTaGCAGGTTGTCTCTGAACTT | + |
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Preference number: 4 (lower is better) Translates to: KQTQKSGLSAKYRIVNISQEVFQ*QVVSEL Trigger: AAGTTCAGAGACAACCTGTCACTGAAAAACCTCCTG...ACTGATATTAACAATTCTGTACTTGGCAGACAGTCCAGACTTCTGGGTCTGCTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000368436.1 |
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| CDS-3UTR CCA 90 bp | AAGTCTGGACTGTCTGCCAAGTACAGAATTGTTAATATCAGTTCTTTTGCTATGGCAGACCCAGAAGTCTaGACTGTCTGCCAAGTACAG | + |
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Preference number: 4 (lower is better) Translates to: KSGLSAKYRIVNISSFAMADPEV*TVCQVQ Trigger: CTGTACTTGGCAGACAGTCCAGACTTCTGGGTCTGC...CATAGCAAAAGAACTGATATTAACAATTCTGTACTTGGCAGACAGTCCAGACTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000368436.1 |
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| CDS-3UTR TCA 90 bp | TGGAGGGGGAAGGAACCAGTAAACCATTTCCTATCTCCCTATTTGGGTTATACAAGAATACCCTCTGATTaGATGAAAGATTACAGGAGG | + |
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Preference number: 4 (lower is better) Translates to: WRGKEPVNHFLSPYLGYTRIPSD*MKDYRR Trigger: CCTCCTGTAATCTTTCATTCAATCAGAGGGTATTCT...TGTATAACCCAAATAGGGAGATAGGAAATGGTTTACTGGTTCCTTCCCCCTCCA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000368436.1 |
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| CDS-3UTR CCA 90 bp | AAGCAGACCCAGAAGTCTGGACTGTCTGCCAAGTACAGAATTGTTAATATCAGTTGGCAGCTGGGTGTCTaGTGTCTTATCAATAAATAT | + |
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Preference number: 4 (lower is better) Translates to: KQTQKSGLSAKYRIVNISWQLGV*CLINKY Trigger: ATATTTATTGATAAGACACCAGACACCCAGCTGCCA...ACTGATATTAACAATTCTGTACTTGGCAGACAGTCCAGACTTCTGGGTCTGCTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000368436.1 |
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| CDS-3UTR CCA 90 bp | AAGTCTGGACTGTCTGCCAAGTACAGAATTGTTAATATCAGTTCTTTTGCTATGCAAGAATGTTTTCGATaGAGAATGAGGCAGGGGCTA | + |
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Preference number: 4 (lower is better) Translates to: KSGLSAKYRIVNISSFAMQECFR*RMRQGL Trigger: TAGCCCCTGCCTCATTCTCCATCGAAAACATTCTTG...CATAGCAAAAGAACTGATATTAACAATTCTGTACTTGGCAGACAGTCCAGACTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000368436.1 |
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| CDS-3UTR CCA 90 bp | TCTCCCTATTTGGGTTATACAATCTTATTCTTTCATTCTCTCAGTGTAGCAGTTGCCAGTGCACTGACCTaGTTCATGGATCATATAATG | + |
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Preference number: 4 (lower is better) Translates to: SPYLGYTILFFHSLSVAVASALT*FMDHIM Trigger: CATTATATGATCCATGAACCAGGTCAGTGCACTGGC...AACTGCTACACTGAGAGAATGAAAGAATAAGATTGTATAACCCAAATAGGGAGA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000368436.1 |
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| CDS-3UTR CCA 90 bp | TCTCCCTATTTGGGTTATACAATCTTATTCTTTCATTCTCTCAGTGTAGCAGTTTGTAGCAGTTCTATATaGTTGTTTTTAGCCAGTGCA | + |
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Preference number: 4 (lower is better) Translates to: SPYLGYTILFFHSLSVAVCSSSI*LFLASA Trigger: TGCACTGGCTAAAAACAACCATATAGAACTGCTACA...AACTGCTACACTGAGAGAATGAAAGAATAAGATTGTATAACCCAAATAGGGAGA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000368436.1 |
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| CDS GCA 90 bp | GCATGCGCCAATTCTATCGCCTCAGTTCCTGTTACTAATTCCTTGTaGCCTCAGCGGCCAAAGCTCACGACCCTCGCTATTGCTCCCGCG | + |
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Preference number: 5 (lower is better) Translates to: ACANSIASVPVTNSL*PQRPKLTTLAIAPA Trigger: CGCGGGAGCAATAGCGAGGGTCGTGAGCTTTGGCCGCTGAGGGCACAAGGAATTAGTAACAGGAACTGAGGCGATAGAATTGGCGCATGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000368439.5 |
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| CDS-3UTR CAA 90 bp | TGTTTATACAGCCCCAGGGTGTCCCTTATTAGTTTTGCCTGGCAGCTGGGTGTCTGTCCCTTATTAGTTTaGCCTGGCAGCTGGGTGTCT | + |
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Preference number: 5 (lower is better) Translates to: CLYSPRVSLISFAWQLGVCPLLV*PGSWVS Trigger: AGACACCCAGCTGCCAGGCAAAACTAATAAGGGACA...GACACCCAGCTGCCAGGCAAAACTAATAAGGGACACCCTGGGGCTGTATAAACA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000368436.1 |
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| CDS-3UTR CAA 90 bp | ACACATCCAAGAATGTTTTCGATGGAGAATGAGGCAGGGGCTATGATCAGGCTATTTTTCAGTGACAGGTaGTCTCTGAACTTCCCAGAT | + |
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Preference number: 5 (lower is better) Translates to: THPRMFSMENEAGAMIRLFFSDR*SLNFPD Trigger: ATCTGGGAAGTTCAGAGACAACCTGTCACTGAAAAA...TAGCCTGATCATAGCCCCTGCCTCATTCTCCATCGAAAACATTCTTGGATGTGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000368436.1 |
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| CDS-3UTR CAA 90 bp | TGGAGGGGGAAGGAACCAGTAAACCATTTCCTATCTCCCTATTTGGGTTATACAAGCAGTTCTATATGGTaGTTTTTAGCCAGTGCACTG | + |
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Preference number: 5 (lower is better) Translates to: WRGKEPVNHFLSPYLGYTSSSIW*FLASAL Trigger: CAGTGCACTGGCTAAAAACAACCATATAGAACTGCT...TGTATAACCCAAATAGGGAGATAGGAAATGGTTTACTGGTTCCTTCCCCCTCCA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000368436.1 |
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| CDS CAA 90 bp | TACGCATGCGCCAATTCTATCGCCTCAGTTCCTGTTACTAATTCCTaGTGCCCTCAGCGGCCAAAGCTCACGACCCTCGCTATTGCTCCC | + |
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Preference number: 6 (lower is better) Translates to: YACANSIASVPVTNS*CPQRPKLTTLAIAP Trigger: GGGAGCAATAGCGAGGGTCGTGAGCTTTGGCCGCTGAGGGCACAAGGAATTAGTAACAGGAACTGAGGCGATAGAATTGGCGCATGCGTA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000368439.5 |
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| CDS CAA 72 bp | GCCAATTCTATCGCCTCAGTTCCTGTTACTAATTCCTaGTGCCCTCAGCGGCCAAAGCTCACGACCCTCGCT | + |
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Preference number: 6 (lower is better) Translates to: ANSIASVPVTNS*CPQRPKLTTLA Trigger: AGCGAGGGTCGTGAGCTTTGGCCGCTGAGGGCACAAGGAATTAGTAACAGGAACTGAGGCGATAGAATTGGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000368439.5 |
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| CDS CAA 72 bp | ATTCTTTCATTCTCTCAGTGTAGCAGTTCTATATGGTaGTTTTTAGCCAGTGCACTGACCTGGTTCATGGAT | + |
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Preference number: 6 (lower is better) Translates to: ILSFSQCSSSIW*FLASALTWFMD Trigger: ATCCATGAACCAGGTCAGTGCACTGGCTAAAAACAACCATATAGAACTGCTACACTGAGAGAATGAAAGAAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000368436.1 |
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| CDS CAA 90 bp | TACAATCTTATTCTTTCATTCTCTCAGTGTAGCAGTTCTATATGGTaGTTTTTAGCCAGTGCACTGACCTGGTTCATGGATCATATAATG | + |
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Preference number: 6 (lower is better) Translates to: YNLILSFSQCSSSIW*FLASALTWFMDHIM Trigger: CATTATATGATCCATGAACCAGGTCAGTGCACTGGCTAAAAACAACCATATAGAACTGCTACACTGAGAGAATGAAAGAATAAGATTGTA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000368436.1 |
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