RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CKAP2L (Homo sapiens)

Ensembl gene IDs: ENSG00000169607

Ensembl transcript IDs: ENST00000302450.11, ENST00000435431.5, ENST00000461876.5, ENST00000474331.1, ENST00000481732.5, ENST00000497357.1

Found 188 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp ATTCTCCTTGGTAATGAATGCTCCTTGTTTCTTAGGACAGCCAACTaGTATATCCTTAGACAAACTCCTAATTCTCTATGCAAAGCCATT +
Preference number: 1 (lower is better)
Translates to: ILLGNECSLFLRTAN*YILRQTPNSLCKAI
Trigger: AATGGCTTTGCATAGAGAATTAGGAGTTTGTCTAAGGATATACCAGTTGGCTGTCCTAAGAAACAAGGAGCATTCATTACCAAGGAGAAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000302450.11
3UTR-3UTR CCA 90 bp CCACAAATAGTTGCCCAGGAGGAAGAAAAAGCAACCTACAACAGTCTCTGGGGCTTCCTGCAGCATTTCTaGGTAGCGGGACACTGCTCG +
Preference number: 2 (lower is better)
Translates to: PQIVAQEEEKATYNSLWGFLQHF*VAGHCS
Trigger: CGAGCAGTGTCCCGCTACCCAGAAATGCTGCAGGAA...GCCCCAGAGACTGTTGTAGGTTGCTTTTTCTTCCTCCTGGGCAACTATTTGTGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000435431.5
3UTR-3UTR TCA 90 bp TCCACAAATAGTTGCCCAGGAGGAAGAAAAAGCAACCTACAACAGTCTCTGGGGTTCGGGGTGTCGCCGTaGCTTGTTCCCTCTCTTTTG +
Preference number: 2 (lower is better)
Translates to: STNSCPGGRKSNLQQSLGFGVSP*LVPSLL
Trigger: CAAAAGAGAGGGAACAAGTCACGGCGACACCCCGAA...CCCCAGAGACTGTTGTAGGTTGCTTTTTCTTCCTCCTGGGCAACTATTTGTGGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENST00000435431.5
3UTR-3UTR TCA 90 bp CCACAAATAGTTGCCCAGGAGGAAGAAAAAGCAACCTACAACAGTCTCTGGGGCGGCCAGCTCTTCCACTaGTGTTATACTAGTTTCAGC +
Preference number: 2 (lower is better)
Translates to: PQIVAQEEEKATYNSLWGGQLFH*CYTSFS
Trigger: GCTGAAACTAGTATAACATCAGTGGAAGAGCTGGCC...GCCCCAGAGACTGTTGTAGGTTGCTTTTTCTTCCTCCTGGGCAACTATTTGTGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000435431.5
3UTR-3UTR CCA 90 bp CCACAAATAGTTGCCCAGGAGGAAGAAAAAGCAACCTACAACAGTCTCTGGGGCTGCCCTCTGCTAAGGTaGATGCAGAAAGAAAAGTCC +
Preference number: 2 (lower is better)
Translates to: PQIVAQEEEKATYNSLWGCPLLR*MQKEKS
Trigger: GGACTTTTCTTTCTGCATCCACCTTAGCAGAGGGCA...GCCCCAGAGACTGTTGTAGGTTGCTTTTTCTTCCTCCTGGGCAACTATTTGTGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000302450.11
ENST00000435431.5
3UTR-3UTR TCA 90 bp CCACAAATAGTTGCCCAGGAGGAAGAAAAAGCAACCTACAACAGTCTCTGGGGCTATGATTCAGGGGTTTaGAACCCCAATGTTACAGGC +
Preference number: 2 (lower is better)
Translates to: PQIVAQEEEKATYNSLWGYDSGV*NPNVTG
Trigger: GCCTGTAACATTGGGGTTTCAAACCCCTGAATCATA...GCCCCAGAGACTGTTGTAGGTTGCTTTTTCTTCCTCCTGGGCAACTATTTGTGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENST00000435431.5
3UTR-3UTR TCA 90 bp CCACAAATAGTTGCCCAGGAGGAAGAAAAAGCAACCTACAACAGTCTCTGGGGCGAATTACTTAAGTCCTaGGCGTCCATAATCTGCATC +
Preference number: 2 (lower is better)
Translates to: PQIVAQEEEKATYNSLWGELLKS*ASIICI
Trigger: GATGCAGATTATGGACGCTCAGGACTTAAGTAATTC...GCCCCAGAGACTGTTGTAGGTTGCTTTTTCTTCCTCCTGGGCAACTATTTGTGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000302450.11
ENST00000435431.5
3UTR-3UTR GCA 90 bp TGCATCTCCCCATTTCCTCTTCCCCAATCTGTGGTAAGCACTTTCTCTGTGTACCTTTGGAGAAATGTCTaGTCAGGTCCTTTGCCCATT +
Preference number: 2 (lower is better)
Translates to: CISPFPLPQSVVSTFSVYLWRNV*SGPLPI
Trigger: AATGGGCAAAGGACCTGAGCAGACATTTCTCCAAAG...GTACACAGAGAAAGTGCTTACCACAGATTGGGGAAGAGGAAATGGGGAGATGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000302450.11
3UTR-3UTR GCA 90 bp CCACAAATAGTTGCCCAGGAGGAAGAAAAAGCAACCTACAACAGTCTCTGGGGCATAATTATGCTGTTCTaGCTTGGCTATTCGGGGTGT +
Preference number: 2 (lower is better)
Translates to: PQIVAQEEEKATYNSLWGIIMLF*LGYSGC
Trigger: ACACCCCGAATAGCCAAGGCAGAACAGCATAATTAT...GCCCCAGAGACTGTTGTAGGTTGCTTTTTCTTCCTCCTGGGCAACTATTTGTGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000435431.5
3UTR-3UTR GCA 90 bp CCACAAATAGTTGCCCAGGAGGAAGAAAAAGCAACCTACAACAGTCTCTGGGGCACTTGCCAACAACTTTaGTTTGCAGATCCAGAATTT +
Preference number: 2 (lower is better)
Translates to: PQIVAQEEEKATYNSLWGTCQQL*FADPEF
Trigger: AAATTCTGGATCTGCAAAGCAAAGTTGTTGGCAAGT...GCCCCAGAGACTGTTGTAGGTTGCTTTTTCTTCCTCCTGGGCAACTATTTGTGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000435431.5
3UTR-3UTR TCA 90 bp TCCACAAATAGTTGCCCAGGAGGAAGAAAAAGCAACCTACAACAGTCTCTGGGGTCACACATAAATTTATaGTCTCTGAGCAAAGGCACA +
Preference number: 2 (lower is better)
Translates to: STNSCPGGRKSNLQQSLGSHINL*SLSKGT
Trigger: TGTGCCTTTGCTCAGAGATCATAAATTTATGTGTGA...CCCCAGAGACTGTTGTAGGTTGCTTTTTCTTCCTCCTGGGCAACTATTTGTGGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000302450.11
ENST00000435431.5
3UTR-3UTR GCA 90 bp CCACAAATAGTTGCCCAGGAGGAAGAAAAAGCAACCTACAACAGTCTCTGGGGCTCTGCTCAGGTCCTTTaGCCATTTTTAATTATTAGT +
Preference number: 2 (lower is better)
Translates to: PQIVAQEEEKATYNSLWGSAQVL*PFLIIS
Trigger: ACTAATAATTAAAAATGGGCAAAGGACCTGAGCAGA...GCCCCAGAGACTGTTGTAGGTTGCTTTTTCTTCCTCCTGGGCAACTATTTGTGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000302450.11
3UTR-3UTR CCA 90 bp TGCATCTCCCCATTTCCTCTTCCCCAATCTGTGGTAAGCACTTTCTCTGTGTACTTCTTATGTCTTCTTTaGAGAAATGTCTGCTCAGGT +
Preference number: 2 (lower is better)
Translates to: CISPFPLPQSVVSTFSVYFLCLL*RNVCSG
Trigger: ACCTGAGCAGACATTTCTCCAAAGAAGACATAAGAA...GTACACAGAGAAAGTGCTTACCACAGATTGGGGAAGAGGAAATGGGGAGATGCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000302450.11
3UTR-3UTR GCA 90 bp GAGTCAGAAGTAATCCCTTCTGTGGTTCTGTTTGAGTCTTGCAAGATATTAAGACACGATGAAAGAACTTaGCCTCTGCTAAGGTGGATG +
Preference number: 2 (lower is better)
Translates to: ESEVIPSVVLFESCKILRHDERT*PLLRWM
Trigger: CATCCACCTTAGCAGAGGGCAAGTTCTTTCATCGTG...TCTTAATATCTTGCAAGACTCAAACAGAACCACAGAAGGGATTACTTCTGACTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000435431.5
3UTR-3UTR CCA 90 bp ATTATGATTCAGGGGTTTGAAACCCCAATGTTACAGGCAGCGCCTCATTTCTACATATTTGGGTTTGTTTaGGTCCCATTTACGGTTGTG +
Preference number: 2 (lower is better)
Translates to: IMIQGFETPMLQAAPHFYIFGFV*VPFTVV
Trigger: CACAACCGTAAATGGGACCCAAACAAACCCAAATAT...GTAGAAATGAGGCGCTGCCTGTAACATTGGGGTTTCAAACCCCTGAATCATAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000435431.5
3UTR-3UTR GCA 90 bp ACAGTTCTATTTTTAATTTCTTTAGGAGCCTCCATACCGTTTTCCATAACGGCTCACGATGAAAGAACTTaGCCTCTGCTAAGGTGGATG +
Preference number: 2 (lower is better)
Translates to: TVLFLISLGASIPFSITAHDERT*PLLRWM
Trigger: CATCCACCTTAGCAGAGGGCAAGTTCTTTCATCGTG...AGCCGTTATGGAAAACGGTATGGAGGCTCCTAAAGAAATTAAAAATAGAACTGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000302450.11
3UTR-3UTR GCA 90 bp ATTATGATTCAGGGGTTTGAAACCCCAATGTTACAGGCAGCGCCTCATTTCTACTTTCCTTCGATCCTCTaGTGTTGCCTTCTTTTTAAT +
Preference number: 2 (lower is better)
Translates to: IMIQGFETPMLQAAPHFYFPSIL*CCLLFN
Trigger: ATTAAAAAGAAGGCAACAGCAGAGGATCGAAGGAAA...GTAGAAATGAGGCGCTGCCTGTAACATTGGGGTTTCAAACCCCTGAATCATAAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000435431.5
3UTR-3UTR TCA 90 bp TTAGGACAGCCAACTGGTATATCCTTAGACAAACTCCTAATTCTCTATGCAAAGGAATTACTTAAGTCCTaGGCGTCCATAATCTGCATC +
Preference number: 2 (lower is better)
Translates to: LGQPTGISLDKLLILYAKELLKS*ASIICI
Trigger: GATGCAGATTATGGACGCTCAGGACTTAAGTAATTC...CTTTGCATAGAGAATTAGGAGTTTGTCTAAGGATATACCAGTTGGCTGTCCTAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000302450.11
3UTR-3UTR GCA 90 bp ACAGTTCTATTTTTAATTTCTTTAGGAGCCTCCATACCGTTTTCCATAACGGCTCTTTCCACAAATAGTTaGCCAGGAGGAAGAAAAAGC +
Preference number: 2 (lower is better)
Translates to: TVLFLISLGASIPFSITALSTNS*PGGRKS
Trigger: GCTTTTTCTTCCTCCTGGGCAACTATTTGTGGAAAG...AGCCGTTATGGAAAACGGTATGGAGGCTCCTAAAGAAATTAAAAATAGAACTGT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000302450.11
3UTR-3UTR GCA 90 bp TCTATTTTTAATTTCTTTAGGAGCCTCCATACCGTTTTCCATAACGGCTGCCCCACTCCTAATTCTCTATaGAAAGCCATTATCATGGTT +
Preference number: 2 (lower is better)
Translates to: SIFNFFRSLHTVFHNGCPTPNSL*KAIIMV
Trigger: AACCATGATAATGGCTTTGCATAGAGAATTAGGAGT...GGGGCAGCCGTTATGGAAAACGGTATGGAGGCTCCTAAAGAAATTAAAAATAGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000302450.11
3UTR-3UTR TCA 90 bp TTAGGACAGCCAACTGGTATATCCTTAGACAAACTCCTAATTCTCTATGCAAAGTCACACATAAATTTATaGTCTCTGAGCAAAGGCACA +
Preference number: 2 (lower is better)
Translates to: LGQPTGISLDKLLILYAKSHINL*SLSKGT
Trigger: TGTGCCTTTGCTCAGAGATCATAAATTTATGTGTGA...CTTTGCATAGAGAATTAGGAGTTTGTCTAAGGATATACCAGTTGGCTGTCCTAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000302450.11
3UTR-3UTR GCA 90 bp ACAGTTCTATTTTTAATTTCTTTAGGAGCCTCCATACCGTTTTCCATAACGGCTCTCCTTGGTAATGAATaGTCCTTGTTTCTTAGGACA +
Preference number: 2 (lower is better)
Translates to: TVLFLISLGASIPFSITALLGNE*SLFLRT
Trigger: TGTCCTAAGAAACAAGGAGCATTCATTACCAAGGAG...AGCCGTTATGGAAAACGGTATGGAGGCTCCTAAAGAAATTAAAAATAGAACTGT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000302450.11
3UTR-3UTR CAA 90 bp CCACAAATAGTTGCCCAGGAGGAAGAAAAAGCAACCTACAACAGTCTCTGGGGCGGGTGTCGCCGTGACTaGTTCCCTCTCTTTTGGAGA +
Preference number: 3 (lower is better)
Translates to: PQIVAQEEEKATYNSLWGGCRRD*FPLFWR
Trigger: TCTCCAAAAGAGAGGGAACAAGTCACGGCGACACCC...GCCCCAGAGACTGTTGTAGGTTGCTTTTTCTTCCTCCTGGGCAACTATTTGTGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000435431.5
3UTR TCA 72 bp TATGCTGTTCTGCCTTGGCTATTCGGGGTGTCGCCGTaGCTTGTTCCCTCTCTTTTGGAGAAAGACAAGACT +
Preference number: 3 (lower is better)
Translates to: YAVLPWLFGVSP*LVPSLLEKDKT
Trigger: AGTCTTGTCTTTCTCCAAAAGAGAGGGAACAAGTCACGGCGACACCCCGAATAGCCAAGGCAGAACAGCATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000435431.5
3UTR-3UTR CAA 90 bp TCCACAAATAGTTGCCCAGGAGGAAGAAAAAGCAACCTACAACAGTCTCTGGGGAACTTTCCGCAACTCTaGTATTGGTGTTGCCCCATT +
Preference number: 3 (lower is better)
Translates to: STNSCPGGRKSNLQQSLGNFPQL*YWCCPI
Trigger: AATGGGGCAACACCAATACAAGAGTTGCGGAAAGTT...CCCCAGAGACTGTTGTAGGTTGCTTTTTCTTCCTCCTGGGCAACTATTTGTGGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000435431.5
3UTR-3UTR CAA 90 bp CCACAAATAGTTGCCCAGGAGGAAGAAAAAGCAACCTACAACAGTCTCTGGGGCGATAAATTTCATGTCTaGCACTTCCGGCATCCCATT +
Preference number: 3 (lower is better)
Translates to: PQIVAQEEEKATYNSLWGDKFHV*HFRHPI
Trigger: AATGGGATGCCGGAAGTGCAAGACATGAAATTTATC...GCCCCAGAGACTGTTGTAGGTTGCTTTTTCTTCCTCCTGGGCAACTATTTGTGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000435431.5
3UTR-3UTR CAA 90 bp CCACAAATAGTTGCCCAGGAGGAAGAAAAAGCAACCTACAACAGTCTCTGGGGCAAAAGTCCCATTATATaGTGGGACCAACCTTCTGAT +
Preference number: 3 (lower is better)
Translates to: PQIVAQEEEKATYNSLWGKSPII*WDQPSD
Trigger: ATCAGAAGGTTGGTCCCACAATATAATGGGACTTTT...GCCCCAGAGACTGTTGTAGGTTGCTTTTTCTTCCTCCTGGGCAACTATTTGTGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000302450.11
ENST00000435431.5
3UTR-3UTR CAA 90 bp TGCATCTCCCCATTTCCTCTTCCCCAATCTGTGGTAAGCACTTTCTCTGTGTACTCCACATCTTGGCTATaGAGAATAACACTGCCACAA +
Preference number: 3 (lower is better)
Translates to: CISPFPLPQSVVSTFSVYSTSWL*RITLPQ
Trigger: TTGTGGCAGTGTTATTCTCAATAGCCAAGATGTGGA...GTACACAGAGAAAGTGCTTACCACAGATTGGGGAAGAGGAAATGGGGAGATGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000302450.11
3UTR-3UTR CAA 90 bp TCCACAAATAGTTGCCCAGGAGGAAGAAAAAGCAACCTACAACAGTCTCTGGGGTACTTGCCAACAACTTaGCTTTGCAGATCCAGAATT +
Preference number: 3 (lower is better)
Translates to: STNSCPGGRKSNLQQSLGYLPTT*LCRSRI
Trigger: AATTCTGGATCTGCAAAGCAAAGTTGTTGGCAAGTA...CCCCAGAGACTGTTGTAGGTTGCTTTTTCTTCCTCCTGGGCAACTATTTGTGGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000435431.5
3UTR-3UTR CAA 90 bp ATTATGATTCAGGGGTTTGAAACCCCAATGTTACAGGCAGCGCCTCATTTCTACATGGGGAGAGAAAATTaGAGAGTAAGCCCAGTGAAT +
Preference number: 3 (lower is better)
Translates to: IMIQGFETPMLQAAPHFYMGREN*RVSPVN
Trigger: ATTCACTGGGCTTACTCTCAAATTTTCTCTCCCCAT...GTAGAAATGAGGCGCTGCCTGTAACATTGGGGTTTCAAACCCCTGAATCATAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENST00000435431.5
3UTR-3UTR CAA 90 bp TGCATCTCCCCATTTCCTCTTCCCCAATCTGTGGTAAGCACTTTCTCTGTGTACTGTAAGAGTCTCTTATaGAAAGTCTGCTGGTATTAC +
Preference number: 3 (lower is better)
Translates to: CISPFPLPQSVVSTFSVYCKSLL*KVCWYY
Trigger: GTAATACCAGCAGACTTTCAATAAGAGACTCTTACA...GTACACAGAGAAAGTGCTTACCACAGATTGGGGAAGAGGAAATGGGGAGATGCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000302450.11
3UTR-3UTR CAA 90 bp TTAGGACAGCCAACTGGTATATCCTTAGACAAACTCCTAATTCTCTATGCAAAGATGGGGAGAGAAAATTaGAGAGTAAGCCCAGTGAAT +
Preference number: 3 (lower is better)
Translates to: LGQPTGISLDKLLILYAKMGREN*RVSPVN
Trigger: ATTCACTGGGCTTACTCTCAAATTTTCTCTCCCCAT...CTTTGCATAGAGAATTAGGAGTTTGTCTAAGGATATACCAGTTGGCTGTCCTAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000302450.11
3UTR CCA 72 bp GGTAATGAATGCTCCTTGTTTCTTAGGACAGCCAACTaGTATATCCTTAGACAAACTCCTAATTCTCTATGC +
Preference number: 3 (lower is better)
Translates to: GNECSLFLRTAN*YILRQTPNSLC
Trigger: GCATAGAGAATTAGGAGTTTGTCTAAGGATATACCAGTTGGCTGTCCTAAGAAACAAGGAGCATTCATTACC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000302450.11
3UTR-3UTR CAA 90 bp GAGTCAGAAGTAATCCCTTCTGTGGTTCTGTTTGAGTCTTGCAAGATATTAAGAAATATTTGGGTTTGTTaGGGTCCCATTTACGGTTGT +
Preference number: 3 (lower is better)
Translates to: ESEVIPSVVLFESCKILRNIWVC*GPIYGC
Trigger: ACAACCGTAAATGGGACCCAAACAAACCCAAATATT...TCTTAATATCTTGCAAGACTCAAACAGAACCACAGAAGGGATTACTTCTGACTC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000435431.5
3UTR GCA 72 bp TCCCTCTTTTCCAAGGATGAATACTATTCCACGGCATaGATATGCCGTATTTTCTTTATTTGTCCATTGATG +
Preference number: 3 (lower is better)
Translates to: SLFSKDEYYSTA*ICRIFFICPLM
Trigger: CATCAATGGACAAATAAAGAAAATACGGCATATGCATGCCGTGGAATAGTATTCATCCTTGGAAAAGAGGGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000302450.11
3UTR GCA 72 bp TGGCTATTGAGAATAACACTGCCACAAACATGTGAGTaGAGATATCTTTATGAGGTGATGATTTCATCTTTT +
Preference number: 3 (lower is better)
Translates to: WLLRITLPQTCE*RYLYEVMISSF
Trigger: AAAAGATGAAATCATCACCTCATAAAGATATCTGCACTCACATGTTTGTGGCAGTGTTATTCTCAATAGCCA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000302450.11
CDS-3UTR TCA 90 bp CCACAAATAGTTGCCCAGGAGGAAGAAAAAGCAACCTACAACAGTCTCTGGGGCCCTCCCGAGTTCAAGTaGTTCTTCTGCCTCAGCCTC +
Preference number: 4 (lower is better)
Translates to: PQIVAQEEEKATYNSLWGPPEFK*FFCLSL
Trigger: GAGGCTGAGGCAGAAGAATCACTTGAACTCGGGAGG...GCCCCAGAGACTGTTGTAGGTTGCTTTTTCTTCCTCCTGGGCAACTATTTGTGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000302450.11
CDS-3UTR GCA 90 bp TCCACAAATAGTTGCCCAGGAGGAAGAAAAAGCAACCTACAACAGTCTCTGGGGCGGCTTCTGGGACCCTaGAGTATTAGGTGGTCTGGG +
Preference number: 4 (lower is better)
Translates to: STNSCPGGRKSNLQQSLGRLLGP*SIRWSG
Trigger: CCCAGACCACCTAATACTGCAGGGTCCCAGAAGCCG...CCCCAGAGACTGTTGTAGGTTGCTTTTTCTTCCTCCTGGGCAACTATTTGTGGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000302450.11
ENST00000435431.5
CDS-3UTR TCA 90 bp TCCACAAATAGTTGCCCAGGAGGAAGAAAAAGCAACCTACAACAGTCTCTGGGGGCTGCAAGGTACTCCTaGAGCTTTCTCTGCCGCTCT +
Preference number: 4 (lower is better)
Translates to: STNSCPGGRKSNLQQSLGAARYS*SFLCRS
Trigger: AGAGCGGCAGAGAAAGCTTCAGGAGTACCTTGCAGC...CCCCAGAGACTGTTGTAGGTTGCTTTTTCTTCCTCCTGGGCAACTATTTGTGGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000302450.11
ENST00000435431.5
CDS-3UTR GCA 90 bp CCACAAATAGTTGCCCAGGAGGAAGAAAAAGCAACCTACAACAGTCTCTGGGGCGCAATTTTGGCTCACTaGAACCTCCACCTCCCGAGT +
Preference number: 4 (lower is better)
Translates to: PQIVAQEEEKATYNSLWGAILAH*NLHLPS
Trigger: ACTCGGGAGGTGGAGGTTGCAGTGAGCCAAAATTGC...GCCCCAGAGACTGTTGTAGGTTGCTTTTTCTTCCTCCTGGGCAACTATTTGTGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000302450.11
CDS-3UTR CCA 90 bp CCACAAATAGTTGCCCAGGAGGAAGAAAAAGCAACCTACAACAGTCTCTGGGGCGCCCAGAAGTTTTGGTaGCTCCAACTTCGGCTTCTG +
Preference number: 4 (lower is better)
Translates to: PQIVAQEEEKATYNSLWGAQKFW*LQLRLL
Trigger: CAGAAGCCGAAGTTGGAGCCACCAAAACTTCTGGGC...GCCCCAGAGACTGTTGTAGGTTGCTTTTTCTTCCTCCTGGGCAACTATTTGTGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000302450.11
ENST00000435431.5
CDS-3UTR CCA 90 bp TCCACAAATAGTTGCCCAGGAGGAAGAAAAAGCAACCTACAACAGTCTCTGGGGTATGCTGTTCTGCCTTaGCTATTCGGGGTGTCGCCG +
Preference number: 4 (lower is better)
Translates to: STNSCPGGRKSNLQQSLGYAVLP*LFGVSP
Trigger: CGGCGACACCCCGAATAGCCAAGGCAGAACAGCATA...CCCCAGAGACTGTTGTAGGTTGCTTTTTCTTCCTCCTGGGCAACTATTTGTGGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000302450.11
ENST00000435431.5
CDS-3UTR CCA 90 bp TCCACAAATAGTTGCCCAGGAGGAAGAAAAAGCAACCTACAACAGTCTCTGGGGTTCCTGCAGCATTTCTaGGTAGCGGGACACTGCTCG +
Preference number: 4 (lower is better)
Translates to: STNSCPGGRKSNLQQSLGFLQHF*VAGHCS
Trigger: CGAGCAGTGTCCCGCTACCCAGAAATGCTGCAGGAA...CCCCAGAGACTGTTGTAGGTTGCTTTTTCTTCCTCCTGGGCAACTATTTGTGGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000302450.11
ENST00000435431.5
CDS-3UTR TCA 90 bp TGCATCTCCCCATTTCCTCTTCCCCAATCTGTGGTAAGCACTTTCTCTGTGTACACTCCTGACCTCAGGTaGTTCACCCACTCCAAAGTG +
Preference number: 4 (lower is better)
Translates to: CISPFPLPQSVVSTFSVYTPDLR*FTHSKV
Trigger: CACTTTGGAGTGGGTGAATCACCTGAGGTCAGGAGT...GTACACAGAGAAAGTGCTTACCACAGATTGGGGAAGAGGAAATGGGGAGATGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000302450.11
CDS-3UTR CCA 90 bp TCCACAAATAGTTGCCCAGGAGGAAGAAAAAGCAACCTACAACAGTCTCTGGGGGCCCAGAAGTTTTGGTaGCTCCAACTTCGGCTTCTG +
Preference number: 4 (lower is better)
Translates to: STNSCPGGRKSNLQQSLGAQKFW*LQLRLL
Trigger: CAGAAGCCGAAGTTGGAGCCACCAAAACTTCTGGGC...CCCCAGAGACTGTTGTAGGTTGCTTTTTCTTCCTCCTGGGCAACTATTTGTGGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000302450.11
ENST00000435431.5
CDS-3UTR CCA 90 bp CCACAAATAGTTGCCCAGGAGGAAGAAAAAGCAACCTACAACAGTCTCTGGGGCCTCTGTAACCCAGGCTaGAGTGCAGTGACGCAATTT +
Preference number: 4 (lower is better)
Translates to: PQIVAQEEEKATYNSLWGLCNPG*SAVTQF
Trigger: AAATTGCGTCACTGCACTCCAGCCTGGGTTACAGAG...GCCCCAGAGACTGTTGTAGGTTGCTTTTTCTTCCTCCTGGGCAACTATTTGTGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000302450.11
CDS-3UTR TCA 90 bp TCCACAAATAGTTGCCCAGGAGGAAGAAAAAGCAACCTACAACAGTCTCTGGGGCCCCACAGGTTTTCTTaGCAGTTCTCCTGTTGTGGA +
Preference number: 4 (lower is better)
Translates to: STNSCPGGRKSNLQQSLGPHRFS*QFSCCG
Trigger: TCCACAACAGGAGAACTGTCAAGAAAACCTGTGGGG...CCCCAGAGACTGTTGTAGGTTGCTTTTTCTTCCTCCTGGGCAACTATTTGTGGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000302450.11
ENST00000435431.5
CDS-3UTR GCA 90 bp CCACAAATAGTTGCCCAGGAGGAAGAAAAAGCAACCTACAACAGTCTCTGGGGCCAGTTTTCCCTTGGCTaGAAGGTACTCCTGAAGCTT +
Preference number: 4 (lower is better)
Translates to: PQIVAQEEEKATYNSLWGQFSLG*KVLLKL
Trigger: AAGCTTCAGGAGTACCTTGCAGCCAAGGGAAAACTG...GCCCCAGAGACTGTTGTAGGTTGCTTTTTCTTCCTCCTGGGCAACTATTTGTGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000302450.11
ENST00000435431.5
CDS-3UTR CCA 90 bp ATTATGATTCAGGGGTTTGAAACCCCAATGTTACAGGCAGCGCCTCATTTCTACTATGCTGTTCTGCCTTaGCTATTCGGGGTGTCGCCG +
Preference number: 4 (lower is better)
Translates to: IMIQGFETPMLQAAPHFYYAVLP*LFGVSP
Trigger: CGGCGACACCCCGAATAGCCAAGGCAGAACAGCATA...GTAGAAATGAGGCGCTGCCTGTAACATTGGGGTTTCAAACCCCTGAATCATAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000435431.5
CDS-3UTR TCA 90 bp CCACAAATAGTTGCCCAGGAGGAAGAAAAAGCAACCTACAACAGTCTCTGGGGCAGAAGAAACACATTCTaGAGTCAGCCTTTTGCCCAG +
Preference number: 4 (lower is better)
Translates to: PQIVAQEEEKATYNSLWGRRNTF*SQPFAQ
Trigger: CTGGGCAAAAGGCTGACTTCAGAATGTGTTTCTTCT...GCCCCAGAGACTGTTGTAGGTTGCTTTTTCTTCCTCCTGGGCAACTATTTGTGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000302450.11
ENST00000435431.5
CDS-3UTR GCA 90 bp TCCACAAATAGTTGCCCAGGAGGAAGAAAAAGCAACCTACAACAGTCTCTGGGGCACGATGAAAGAACTTaGCCTCTGCTAAGGTGGATG +
Preference number: 4 (lower is better)
Translates to: STNSCPGGRKSNLQQSLGHDERT*PLLRWM
Trigger: CATCCACCTTAGCAGAGGGCAAGTTCTTTCATCGTG...CCCCAGAGACTGTTGTAGGTTGCTTTTTCTTCCTCCTGGGCAACTATTTGTGGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000302450.11
ENST00000435431.5
CDS-3UTR CCA 90 bp TCCACAAATAGTTGCCCAGGAGGAAGAAAAAGCAACCTACAACAGTCTCTGGGGCCCTGCAGTATTAGGTaGTCTGGGCTGGAGTTTAAT +
Preference number: 4 (lower is better)
Translates to: STNSCPGGRKSNLQQSLGPCSIR*SGLEFN
Trigger: ATTAAACTCCAGCCCAGACCACCTAATACTGCAGGG...CCCCAGAGACTGTTGTAGGTTGCTTTTTCTTCCTCCTGGGCAACTATTTGTGGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000302450.11
ENST00000435431.5
CDS-3UTR CCA 90 bp TCCACAAATAGTTGCCCAGGAGGAAGAAAAAGCAACCTACAACAGTCTCTGGGGACAGTTCTCCTGTTGTaGACGATCCAGCTTCACACT +
Preference number: 4 (lower is better)
Translates to: STNSCPGGRKSNLQQSLGTVLLL*TIQLHT
Trigger: AGTGTGAAGCTGGATCGTCCACAACAGGAGAACTGT...CCCCAGAGACTGTTGTAGGTTGCTTTTTCTTCCTCCTGGGCAACTATTTGTGGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000302450.11
ENST00000435431.5
CDS-3UTR CCA 90 bp TGCATCTCCCCATTTCCTCTTCCCCAATCTGTGGTAAGCACTTTCTCTGTGTACACCACTGGTTCCATTTaGTCTTATGCTAGGGGTGCT +
Preference number: 4 (lower is better)
Translates to: CISPFPLPQSVVSTFSVYTTGSI*SYARGA
Trigger: AGCACCCCTAGCATAAGACCAAATGGAACCAGTGGT...GTACACAGAGAAAGTGCTTACCACAGATTGGGGAAGAGGAAATGGGGAGATGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000302450.11
CDS-3UTR CCA 90 bp TCTATTTTTAATTTCTTTAGGAGCCTCCATACCGTTTTCCATAACGGCTGCCCCTTCCTGCAGCATTTCTaGGTAGCGGGACACTGCTCG +
Preference number: 4 (lower is better)
Translates to: SIFNFFRSLHTVFHNGCPFLQHF*VAGHCS
Trigger: CGAGCAGTGTCCCGCTACCCAGAAATGCTGCAGGAA...GGGGCAGCCGTTATGGAAAACGGTATGGAGGCTCCTAAAGAAATTAAAAATAGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000302450.11
CDS-3UTR CCA 90 bp TCCACAAATAGTTGCCCAGGAGGAAGAAAAAGCAACCTACAACAGTCTCTGGGGTGCCCTCTGCTAAGGTaGATGCAGAAAGAAAAGTCC +
Preference number: 4 (lower is better)
Translates to: STNSCPGGRKSNLQQSLGCPLLR*MQKEKS
Trigger: GGACTTTTCTTTCTGCATCCACCTTAGCAGAGGGCA...CCCCAGAGACTGTTGTAGGTTGCTTTTTCTTCCTCCTGGGCAACTATTTGTGGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000302450.11
ENST00000435431.5
CDS-3UTR TCA 90 bp TCCACAAATAGTTGCCCAGGAGGAAGAAAAAGCAACCTACAACAGTCTCTGGGGAGAAGAAACACATTCTaGAGTCAGCCTTTTGCCCAG +
Preference number: 4 (lower is better)
Translates to: STNSCPGGRKSNLQQSLGRRNTF*SQPFAQ
Trigger: CTGGGCAAAAGGCTGACTTCAGAATGTGTTTCTTCT...CCCCAGAGACTGTTGTAGGTTGCTTTTTCTTCCTCCTGGGCAACTATTTGTGGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000302450.11
ENST00000435431.5
CDS-3UTR GCA 90 bp GAGTCAGAAGTAATCCCTTCTGTGGTTCTGTTTGAGTCTTGCAAGATATTAAGACGGCTTCTGGGACCCTaGAGTATTAGGTGGTCTGGG +
Preference number: 4 (lower is better)
Translates to: ESEVIPSVVLFESCKILRRLLGP*SIRWSG
Trigger: CCCAGACCACCTAATACTGCAGGGTCCCAGAAGCCG...TCTTAATATCTTGCAAGACTCAAACAGAACCACAGAAGGGATTACTTCTGACTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000435431.5
CDS-3UTR GCA 90 bp CCACAAATAGTTGCCCAGGAGGAAGAAAAAGCAACCTACAACAGTCTCTGGGGCTTTTACTCCTGGTCTTaGAAGATCTGCTCCTCTAGA +
Preference number: 4 (lower is better)
Translates to: PQIVAQEEEKATYNSLWGFYSWS*KICSSR
Trigger: TCTAGAGGAGCAGATCTTGCAAGACCAGGAGTAAAA...GCCCCAGAGACTGTTGTAGGTTGCTTTTTCTTCCTCCTGGGCAACTATTTGTGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000302450.11
CDS-3UTR GCA 90 bp TTAGGACAGCCAACTGGTATATCCTTAGACAAACTCCTAATTCTCTATGCAAAGTGGGTAGCGGGACACTaGTCGCTCAATCCTCGACGA +
Preference number: 4 (lower is better)
Translates to: LGQPTGISLDKLLILYAKWVAGH*SLNPRR
Trigger: TCGTCGAGGATTGAGCGAGCAGTGTCCCGCTACCCA...CTTTGCATAGAGAATTAGGAGTTTGTCTAAGGATATACCAGTTGGCTGTCCTAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000302450.11
CDS-3UTR GCA 90 bp TCAGCTTCAGGAATGCTGGACAATATGTTAAGTATTTCATTAGAAGGTACACCCTGGGTAGCGGGACACTaGTCGCTCAATCCTCGACGA +
Preference number: 4 (lower is better)
Translates to: SASGMLDNMLSISLEGTPWVAGH*SLNPRR
Trigger: TCGTCGAGGATTGAGCGAGCAGTGTCCCGCTACCCA...GGGTGTACCTTCTAATGAAATACTTAACATATTGTCCAGCATTCCTGAAGCTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000435431.5
CDS-3UTR GCA 90 bp TCTATTTTTAATTTCTTTAGGAGCCTCCATACCGTTTTCCATAACGGCTGCCCCACAGGTGTGAGTCACTaGGCCCAGCTGGTGATTTCA +
Preference number: 4 (lower is better)
Translates to: SIFNFFRSLHTVFHNGCPTGVSH*AQLVIS
Trigger: TGAAATCACCAGCTGGGCGCAGTGACTCACACCTGT...GGGGCAGCCGTTATGGAAAACGGTATGGAGGCTCCTAAAGAAATTAAAAATAGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000302450.11
CDS-3UTR GCA 90 bp TGCATCTCCCCATTTCCTCTTCCCCAATCTGTGGTAAGCACTTTCTCTGTGTACTTTGTATCCTTGGCCTaGATCTCCCCATTTCCTCTT +
Preference number: 4 (lower is better)
Translates to: CISPFPLPQSVVSTFSVYFVSLA*ISPFPL
Trigger: AAGAGGAAATGGGGAGATGCAGGCCAAGGATACAAA...GTACACAGAGAAAGTGCTTACCACAGATTGGGGAAGAGGAAATGGGGAGATGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000302450.11
CDS-3UTR CCA 90 bp TCCACAAATAGTTGCCCAGGAGGAAGAAAAAGCAACCTACAACAGTCTCTGGGGGGTATGTTCTGGGTTTaGTGTGCTTCACTCTCTGTT +
Preference number: 4 (lower is better)
Translates to: STNSCPGGRKSNLQQSLGGMFWV*CASLSV
Trigger: AACAGAGAGTGAAGCACACCAAACCCAGAACATACC...CCCCAGAGACTGTTGTAGGTTGCTTTTTCTTCCTCCTGGGCAACTATTTGTGGA
47% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt.
Matches the following 1 transcripts:
ENST00000302450.11
CDS-3UTR CCA 90 bp TCTATTTTTAATTTCTTTAGGAGCCTCCATACCGTTTTCCATAACGGCTGCCCCACCTACAACAGTCTCTaGGGCTTGCACTGCCTTCTC +
Preference number: 4 (lower is better)
Translates to: SIFNFFRSLHTVFHNGCPTYNSL*GLHCLL
Trigger: GAGAAGGCAGTGCAAGCCCCAGAGACTGTTGTAGGT...GGGGCAGCCGTTATGGAAAACGGTATGGAGGCTCCTAAAGAAATTAAAAATAGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000302450.11
CDS-3UTR CCA 90 bp CCACAAATAGTTGCCCAGGAGGAAGAAAAAGCAACCTACAACAGTCTCTGGGGCCTATGTTGTGGCAAATaGCAAGAACTCCCTCTTTTC +
Preference number: 4 (lower is better)
Translates to: PQIVAQEEEKATYNSLWGLCCGK*QELPLF
Trigger: GAAAAGAGGGAGTTCTTGCCATTTGCCACAACATAG...GCCCCAGAGACTGTTGTAGGTTGCTTTTTCTTCCTCCTGGGCAACTATTTGTGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000302450.11
CDS-3UTR TCA 90 bp TCAGCTTCAGGAATGCTGGACAATATGTTAAGTATTTCATTAGAAGGTACACCCGCTGCAAGGTACTCCTaGAGCTTTCTCTGCCGCTCT +
Preference number: 4 (lower is better)
Translates to: SASGMLDNMLSISLEGTPAARYS*SFLCRS
Trigger: AGAGCGGCAGAGAAAGCTTCAGGAGTACCTTGCAGC...GGGTGTACCTTCTAATGAAATACTTAACATATTGTCCAGCATTCCTGAAGCTGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000435431.5
CDS-3UTR TCA 90 bp TGCATCTCCCCATTTCCTCTTCCCCAATCTGTGGTAAGCACTTTCTCTGTGTACTCTAGAGAGTTGCTGTaGTTTTACTGGGAAAGTCCT +
Preference number: 4 (lower is better)
Translates to: CISPFPLPQSVVSTFSVYSRELL*FYWESP
Trigger: AGGACTTTCCCAGTAAAATCACAGCAACTCTCTAGA...GTACACAGAGAAAGTGCTTACCACAGATTGGGGAAGAGGAAATGGGGAGATGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000302450.11
CDS-3UTR TCA 90 bp CCACAAATAGTTGCCCAGGAGGAAGAAAAAGCAACCTACAACAGTCTCTGGGGCCTTTTGCAGTACACATaGTGTCTGAGGTATACAAAC +
Preference number: 4 (lower is better)
Translates to: PQIVAQEEEKATYNSLWGLLQYT*CLRYTN
Trigger: GTTTGTATACCTCAGACATCATGTGTACTGCAAAAG...GCCCCAGAGACTGTTGTAGGTTGCTTTTTCTTCCTCCTGGGCAACTATTTGTGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000302450.11
CDS-3UTR TCA 90 bp GAGTCAGAAGTAATCCCTTCTGTGGTTCTGTTTGAGTCTTGCAAGATATTAAGATTCGGGGTGTCGCCGTaGCTTGTTCCCTCTCTTTTG +
Preference number: 4 (lower is better)
Translates to: ESEVIPSVVLFESCKILRFGVSP*LVPSLL
Trigger: CAAAAGAGAGGGAACAAGTCACGGCGACACCCCGAA...TCTTAATATCTTGCAAGACTCAAACAGAACCACAGAAGGGATTACTTCTGACTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000435431.5
CDS-3UTR GCA 90 bp ATTATGATTCAGGGGTTTGAAACCCCAATGTTACAGGCAGCGCCTCATTTCTACCAGTTTTCCCTTGGCTaGAAGGTACTCCTGAAGCTT +
Preference number: 4 (lower is better)
Translates to: IMIQGFETPMLQAAPHFYQFSLG*KVLLKL
Trigger: AAGCTTCAGGAGTACCTTGCAGCCAAGGGAAAACTG...GTAGAAATGAGGCGCTGCCTGTAACATTGGGGTTTCAAACCCCTGAATCATAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000435431.5
CDS-3UTR GCA 90 bp TCCACAAATAGTTGCCCAGGAGGAAGAAAAAGCAACCTACAACAGTCTCTGGGGGCTCCTCTAGAGAGTTaGTGTGATTTTACTGGGAAA +
Preference number: 4 (lower is better)
Translates to: STNSCPGGRKSNLQQSLGAPLES*CDFTGK
Trigger: TTTCCCAGTAAAATCACAGCAACTCTCTAGAGGAGC...CCCCAGAGACTGTTGTAGGTTGCTTTTTCTTCCTCCTGGGCAACTATTTGTGGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000302450.11
CDS-3UTR GCA 90 bp TCCACAAATAGTTGCCCAGGAGGAAGAAAAAGCAACCTACAACAGTCTCTGGGGATAATTATGCTGTTCTaGCTTGGCTATTCGGGGTGT +
Preference number: 4 (lower is better)
Translates to: STNSCPGGRKSNLQQSLGIIMLF*LGYSGC
Trigger: ACACCCCGAATAGCCAAGGCAGAACAGCATAATTAT...CCCCAGAGACTGTTGTAGGTTGCTTTTTCTTCCTCCTGGGCAACTATTTGTGGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000302450.11
ENST00000435431.5
CDS-3UTR GCA 90 bp CCACAAATAGTTGCCCAGGAGGAAGAAAAAGCAACCTACAACAGTCTCTGGGGCCCATATGTGAGATCATaGAGTATTTTTCCTTGGGTC +
Preference number: 4 (lower is better)
Translates to: PQIVAQEEEKATYNSLWGPYVRS*SIFPWV
Trigger: GACCCAAGGAAAAATACTGCATGATCTCACATATGG...GCCCCAGAGACTGTTGTAGGTTGCTTTTTCTTCCTCCTGGGCAACTATTTGTGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000302450.11
CDS-3UTR CCA 90 bp ATTATGATTCAGGGGTTTGAAACCCCAATGTTACAGGCAGCGCCTCATTTCTACCCCTGCAGTATTAGGTaGTCTGGGCTGGAGTTTAAT +
Preference number: 4 (lower is better)
Translates to: IMIQGFETPMLQAAPHFYPCSIR*SGLEFN
Trigger: ATTAAACTCCAGCCCAGACCACCTAATACTGCAGGG...GTAGAAATGAGGCGCTGCCTGTAACATTGGGGTTTCAAACCCCTGAATCATAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000435431.5
CDS-3UTR TCA 90 bp TTAGGACAGCCAACTGGTATATCCTTAGACAAACTCCTAATTCTCTATGCAAAGAGAGGGAACCGTCCTTaGGGGTTTTACTCCTGGTCT +
Preference number: 4 (lower is better)
Translates to: LGQPTGISLDKLLILYAKRGNRP*GFYSWS
Trigger: AGACCAGGAGTAAAACCCTCAAGGACGGTTCCCTCT...CTTTGCATAGAGAATTAGGAGTTTGTCTAAGGATATACCAGTTGGCTGTCCTAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000302450.11
CDS-3UTR TCA 90 bp TGCATCTCCCCATTTCCTCTTCCCCAATCTGTGGTAAGCACTTTCTCTGTGTACTTGTTATATTCACCCTaGAGCAAACTGGGGTATGTT +
Preference number: 4 (lower is better)
Translates to: CISPFPLPQSVVSTFSVYLLYSP*SKLGYV
Trigger: AACATACCCCAGTTTGCTTCAGGGTGAATATAACAA...GTACACAGAGAAAGTGCTTACCACAGATTGGGGAAGAGGAAATGGGGAGATGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000302450.11
CDS-3UTR TCA 90 bp ATTATGATTCAGGGGTTTGAAACCCCAATGTTACAGGCAGCGCCTCATTTCTACTCCCATTTACGGTTGTaGCATCAGCTTGAGTTTTGG +
Preference number: 4 (lower is better)
Translates to: IMIQGFETPMLQAAPHFYSHLRL*HQLEFW
Trigger: CCAAAACTCAAGCTGATGTCACAACCGTAAATGGGA...GTAGAAATGAGGCGCTGCCTGTAACATTGGGGTTTCAAACCCCTGAATCATAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000435431.5
CDS-3UTR TCA 90 bp TCTATTTTTAATTTCTTTAGGAGCCTCCATACCGTTTTCCATAACGGCTGCCCCGGCCAGCTCTTCCACTaGTGTTATACTAGTTTCAGC +
Preference number: 4 (lower is better)
Translates to: SIFNFFRSLHTVFHNGCPGQLFH*CYTSFS
Trigger: GCTGAAACTAGTATAACATCAGTGGAAGAGCTGGCC...GGGGCAGCCGTTATGGAAAACGGTATGGAGGCTCCTAAAGAAATTAAAAATAGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000302450.11
CDS-3UTR GCA 90 bp TCTATTTTTAATTTCTTTAGGAGCCTCCATACCGTTTTCCATAACGGCTGCCCCCTGAAGTCAGCCTTTTaGCCAGAAGTTTTGGTGGCT +
Preference number: 4 (lower is better)
Translates to: SIFNFFRSLHTVFHNGCPLKSAF*PEVLVA
Trigger: AGCCACCAAAACTTCTGGGCAAAAGGCTGACTTCAG...GGGGCAGCCGTTATGGAAAACGGTATGGAGGCTCCTAAAGAAATTAAAAATAGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 22 nt.
Matches the following 1 transcripts:
ENST00000302450.11
CDS-3UTR GCA 90 bp TCCACAAATAGTTGCCCAGGAGGAAGAAAAAGCAACCTACAACAGTCTCTGGGGCTCCTTGGTAATGAATaGTCCTTGTTTCTTAGGACA +
Preference number: 4 (lower is better)
Translates to: STNSCPGGRKSNLQQSLGLLGNE*SLFLRT
Trigger: TGTCCTAAGAAACAAGGAGCATTCATTACCAAGGAG...CCCCAGAGACTGTTGTAGGTTGCTTTTTCTTCCTCCTGGGCAACTATTTGTGGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000302450.11
CDS-3UTR CCA 90 bp CCACAAATAGTTGCCCAGGAGGAAGAAAAAGCAACCTACAACAGTCTCTGGGGCAGAAGGCTTAGAGTATaGGTTAGAAGAAACACATTC +
Preference number: 4 (lower is better)
Translates to: PQIVAQEEEKATYNSLWGRRLRV*VRRNTF
Trigger: GAATGTGTTTCTTCTAACCCATACTCTAAGCCTTCT...GCCCCAGAGACTGTTGTAGGTTGCTTTTTCTTCCTCCTGGGCAACTATTTGTGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000302450.11
ENST00000435431.5
CDS-3UTR CCA 90 bp TCCACAAATAGTTGCCCAGGAGGAAGAAAAAGCAACCTACAACAGTCTCTGGGGGTCAAATTAGGCCTCTaGCTTATGGCTTTTGACTTT +
Preference number: 4 (lower is better)
Translates to: STNSCPGGRKSNLQQSLGVKLGL*LMAFDF
Trigger: AAAGTCAAAAGCCATAAGCCAGAGGCCTAATTTGAC...CCCCAGAGACTGTTGTAGGTTGCTTTTTCTTCCTCCTGGGCAACTATTTGTGGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000302450.11
CDS-3UTR CCA 90 bp TCCACAAATAGTTGCCCAGGAGGAAGAAAAAGCAACCTACAACAGTCTCTGGGGATATTTGGGTTTGTTTaGGTCCCATTTACGGTTGTG +
Preference number: 4 (lower is better)
Translates to: STNSCPGGRKSNLQQSLGIFGFV*VPFTVV
Trigger: CACAACCGTAAATGGGACCCAAACAAACCCAAATAT...CCCCAGAGACTGTTGTAGGTTGCTTTTTCTTCCTCCTGGGCAACTATTTGTGGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000302450.11
ENST00000435431.5
CDS-3UTR CCA 90 bp GAGTCAGAAGTAATCCCTTCTGTGGTTCTGTTTGAGTCTTGCAAGATATTAAGAACCTACAACAGTCTCTaGGGCTTGCACTGCCTTCTC +
Preference number: 4 (lower is better)
Translates to: ESEVIPSVVLFESCKILRTYNSL*GLHCLL
Trigger: GAGAAGGCAGTGCAAGCCCCAGAGACTGTTGTAGGT...TCTTAATATCTTGCAAGACTCAAACAGAACCACAGAAGGGATTACTTCTGACTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000435431.5
CDS-3UTR CCA 90 bp CCACAAATAGTTGCCCAGGAGGAAGAAAAAGCAACCTACAACAGTCTCTGGGGCGTTGTTTCCACATCTTaGCTATTGAGAATAACACTG +
Preference number: 4 (lower is better)
Translates to: PQIVAQEEEKATYNSLWGVVSTS*LLRITL
Trigger: CAGTGTTATTCTCAATAGCCAAGATGTGGAAACAAC...GCCCCAGAGACTGTTGTAGGTTGCTTTTTCTTCCTCCTGGGCAACTATTTGTGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000302450.11
CDS-3UTR TCA 90 bp ACAGTTCTATTTTTAATTTCTTTAGGAGCCTCCATACCGTTTTCCATAACGGCTAGGGTCCGAATAAAGTaGGAGGGAACCGTCCTTGAG +
Preference number: 4 (lower is better)
Translates to: TVLFLISLGASIPFSITARVRIK*EGTVLE
Trigger: CTCAAGGACGGTTCCCTCTCACTTTATTCGGACCCT...AGCCGTTATGGAAAACGGTATGGAGGCTCCTAAAGAAATTAAAAATAGAACTGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000302450.11
CDS-3UTR TCA 90 bp TCTATTTTTAATTTCTTTAGGAGCCTCCATACCGTTTTCCATAACGGCTGCCCCTCCCATTTACGGTTGTaGCATCAGCTTGAGTTTTGG +
Preference number: 4 (lower is better)
Translates to: SIFNFFRSLHTVFHNGCPSHLRL*HQLEFW
Trigger: CCAAAACTCAAGCTGATGTCACAACCGTAAATGGGA...GGGGCAGCCGTTATGGAAAACGGTATGGAGGCTCCTAAAGAAATTAAAAATAGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENST00000302450.11
CDS-3UTR TCA 90 bp TCTATTTTTAATTTCTTTAGGAGCCTCCATACCGTTTTCCATAACGGCTGCCCCTATGATTCAGGGGTTTaGAACCCCAATGTTACAGGC +
Preference number: 4 (lower is better)
Translates to: SIFNFFRSLHTVFHNGCPYDSGV*NPNVTG
Trigger: GCCTGTAACATTGGGGTTTCAAACCCCTGAATCATA...GGGGCAGCCGTTATGGAAAACGGTATGGAGGCTCCTAAAGAAATTAAAAATAGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 21 nt.
Matches the following 1 transcripts:
ENST00000302450.11
CDS-3UTR GCA 90 bp TCCACAAATAGTTGCCCAGGAGGAAGAAAAAGCAACCTACAACAGTCTCTGGGGACTTGCCAACAACTTTaGTTTGCAGATCCAGAATTT +
Preference number: 4 (lower is better)
Translates to: STNSCPGGRKSNLQQSLGTCQQL*FADPEF
Trigger: AAATTCTGGATCTGCAAAGCAAAGTTGTTGGCAAGT...CCCCAGAGACTGTTGTAGGTTGCTTTTTCTTCCTCCTGGGCAACTATTTGTGGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000302450.11
ENST00000435431.5
CDS-3UTR GCA 90 bp ATTATGATTCAGGGGTTTGAAACCCCAATGTTACAGGCAGCGCCTCATTTCTACCTTTCCACAAATAGTTaGCCAGGAGGAAGAAAAAGC +
Preference number: 4 (lower is better)
Translates to: IMIQGFETPMLQAAPHFYLSTNS*PGGRKS
Trigger: GCTTTTTCTTCCTCCTGGGCAACTATTTGTGGAAAG...GTAGAAATGAGGCGCTGCCTGTAACATTGGGGTTTCAAACCCCTGAATCATAAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000435431.5
CDS-3UTR CCA 90 bp CCACAAATAGTTGCCCAGGAGGAAGAAAAAGCAACCTACAACAGTCTCTGGGGCATTTTTCCTTGGGTCTaGCTTATTTCACTTAGCATA +
Preference number: 4 (lower is better)
Translates to: PQIVAQEEEKATYNSLWGIFPWV*LISLSI
Trigger: TATGCTAAGTGAAATAAGCCAGACCCAAGGAAAAAT...GCCCCAGAGACTGTTGTAGGTTGCTTTTTCTTCCTCCTGGGCAACTATTTGTGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000302450.11
3UTR CAA 72 bp GCCCTATCTCTAGACTTGTTCATTTTATCTGCTATTTaGTATCCTTGGCCTGCATCTCCCCATTTCCTCTTC +
Preference number: 4 (lower is better)
Translates to: ALSLDLFILSAI*YPWPASPHFLF
Trigger: GAAGAGGAAATGGGGAGATGCAGGCCAAGGATACAAAATAGCAGATAAAATGAACAAGTCTAGAGATAGGGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000302450.11
CDS-3UTR TCA 90 bp TTAGGACAGCCAACTGGTATATCCTTAGACAAACTCCTAATTCTCTATGCAAAGCCAGCTTCACACTGTTaGAAACTCTTGCTAGAAGGC +
Preference number: 4 (lower is better)
Translates to: LGQPTGISLDKLLILYAKPASHC*KLLLEG
Trigger: GCCTTCTAGCAAGAGTTTTCAACAGTGTGAAGCTGG...CTTTGCATAGAGAATTAGGAGTTTGTCTAAGGATATACCAGTTGGCTGTCCTAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000302450.11
CDS-3UTR TCA 90 bp TCTATTTTTAATTTCTTTAGGAGCCTCCATACCGTTTTCCATAACGGCTGCCCCAACAGCACTATTAACTaGACTTTTGCCCAAGGCTTG +
Preference number: 4 (lower is better)
Translates to: SIFNFFRSLHTVFHNGCPNSTIN*TFAQGL
Trigger: CAAGCCTTGGGCAAAAGTTCAGTTAATAGTGCTGTT...GGGGCAGCCGTTATGGAAAACGGTATGGAGGCTCCTAAAGAAATTAAAAATAGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENST00000302450.11
CDS-3UTR TCA 90 bp ACAGTTCTATTTTTAATTTCTTTAGGAGCCTCCATACCGTTTTCCATAACGGCTACTGCGCCCAGCTGGTaGTTTCATCTTCTTTGGGTA +
Preference number: 4 (lower is better)
Translates to: TVLFLISLGASIPFSITATAPSW*FHLLWV
Trigger: TACCCAAAGAAGATGAAATCACCAGCTGGGCGCAGT...AGCCGTTATGGAAAACGGTATGGAGGCTCCTAAAGAAATTAAAAATAGAACTGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000302450.11
CDS-3UTR GCA 90 bp TTAGGACAGCCAACTGGTATATCCTTAGACAAACTCCTAATTCTCTATGCAAAGTGGTCTTGCAAGATCTaGTCCTCTAGAGAGTTGCTG +
Preference number: 4 (lower is better)
Translates to: LGQPTGISLDKLLILYAKWSCKI*SSRELL
Trigger: CAGCAACTCTCTAGAGGAGCAGATCTTGCAAGACCA...CTTTGCATAGAGAATTAGGAGTTTGTCTAAGGATATACCAGTTGGCTGTCCTAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000302450.11
CDS-3UTR CCA 90 bp TCCACAAATAGTTGCCCAGGAGGAAGAAAAAGCAACCTACAACAGTCTCTGGGGACAGGCAAAACAACATaGTTGGTAACATCATTTTTG +
Preference number: 4 (lower is better)
Translates to: STNSCPGGRKSNLQQSLGTGKTT*LVTSFL
Trigger: CAAAAATGATGTTACCAACCATGTTGTTTTGCCTGT...CCCCAGAGACTGTTGTAGGTTGCTTTTTCTTCCTCCTGGGCAACTATTTGTGGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENST00000302450.11
ENST00000435431.5
CDS-3UTR CCA 90 bp GAGTCAGAAGTAATCCCTTCTGTGGTTCTGTTTGAGTCTTGCAAGATATTAAGAACAGTTCTCCTGTTGTaGACGATCCAGCTTCACACT +
Preference number: 4 (lower is better)
Translates to: ESEVIPSVVLFESCKILRTVLLL*TIQLHT
Trigger: AGTGTGAAGCTGGATCGTCCACAACAGGAGAACTGT...TCTTAATATCTTGCAAGACTCAAACAGAACCACAGAAGGGATTACTTCTGACTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000435431.5
CDS-3UTR TCA 90 bp GAGTCAGAAGTAATCCCTTCTGTGGTTCTGTTTGAGTCTTGCAAGATATTAAGATATGATTCAGGGGTTTaGAACCCCAATGTTACAGGC +
Preference number: 4 (lower is better)
Translates to: ESEVIPSVVLFESCKILRYDSGV*NPNVTG
Trigger: GCCTGTAACATTGGGGTTTCAAACCCCTGAATCATA...TCTTAATATCTTGCAAGACTCAAACAGAACCACAGAAGGGATTACTTCTGACTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000435431.5
CDS-3UTR TCA 90 bp ATTATGATTCAGGGGTTTGAAACCCCAATGTTACAGGCAGCGCCTCATTTCTACCTTTTTGCATTTCCTTaGTCTGTTAACTGCTGCTTT +
Preference number: 4 (lower is better)
Translates to: IMIQGFETPMLQAAPHFYLFAFP*SVNCCF
Trigger: AAAGCAGCAGTTAACAGATCAAGGAAATGCAAAAAG...GTAGAAATGAGGCGCTGCCTGTAACATTGGGGTTTCAAACCCCTGAATCATAAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000435431.5
CDS-3UTR GCA 90 bp TTAGGACAGCCAACTGGTATATCCTTAGACAAACTCCTAATTCTCTATGCAAAGGTTCTGGGTTTGGTGTaGTTCACTCTCTGTTCAGTA +
Preference number: 4 (lower is better)
Translates to: LGQPTGISLDKLLILYAKVLGLV*FTLCSV
Trigger: TACTGAACAGAGAGTGAAGCACACCAAACCCAGAAC...CTTTGCATAGAGAATTAGGAGTTTGTCTAAGGATATACCAGTTGGCTGTCCTAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000302450.11
CDS-3UTR GCA 90 bp TTAGGACAGCCAACTGGTATATCCTTAGACAAACTCCTAATTCTCTATGCAAAGCTTTGGAGAAATGTCTaGTCAGGTCCTTTGCCCATT +
Preference number: 4 (lower is better)
Translates to: LGQPTGISLDKLLILYAKLWRNV*SGPLPI
Trigger: AATGGGCAAAGGACCTGAGCAGACATTTCTCCAAAG...CTTTGCATAGAGAATTAGGAGTTTGTCTAAGGATATACCAGTTGGCTGTCCTAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000302450.11
CDS-3UTR CCA 90 bp GAGTCAGAAGTAATCCCTTCTGTGGTTCTGTTTGAGTCTTGCAAGATATTAAGATCTTCAGTTTTCCCTTaGCTGCAAGGTACTCCTGAA +
Preference number: 4 (lower is better)
Translates to: ESEVIPSVVLFESCKILRSSVFP*LQGTPE
Trigger: TTCAGGAGTACCTTGCAGCCAAGGGAAAACTGAAGA...TCTTAATATCTTGCAAGACTCAAACAGAACCACAGAAGGGATTACTTCTGACTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000435431.5
CDS-3UTR CCA 90 bp ACAGTTCTATTTTTAATTTCTTTAGGAGCCTCCATACCGTTTTCCATAACGGCTAACTGGGGTATGTTCTaGGTTTGGTGTGCTTCACTC +
Preference number: 4 (lower is better)
Translates to: TVLFLISLGASIPFSITANWGMF*VWCASL
Trigger: GAGTGAAGCACACCAAACCCAGAACATACCCCAGTT...AGCCGTTATGGAAAACGGTATGGAGGCTCCTAAAGAAATTAAAAATAGAACTGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000302450.11
CDS-3UTR CCA 90 bp ACAGTTCTATTTTTAATTTCTTTAGGAGCCTCCATACCGTTTTCCATAACGGCTGGTCCATCTATGTTGTaGCAAATGGCAAGAACTCCC +
Preference number: 4 (lower is better)
Translates to: TVLFLISLGASIPFSITAGPSML*QMARTP
Trigger: GGGAGTTCTTGCCATTTGCCACAACATAGATGGACC...AGCCGTTATGGAAAACGGTATGGAGGCTCCTAAAGAAATTAAAAATAGAACTGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000302450.11
CDS-3UTR TCA 90 bp TTAGGACAGCCAACTGGTATATCCTTAGACAAACTCCTAATTCTCTATGCAAAGAGTACACATGATGTCTaGGGTATACAAACTTGGCTG +
Preference number: 4 (lower is better)
Translates to: LGQPTGISLDKLLILYAKSTHDV*GIQTWL
Trigger: CAGCCAAGTTTGTATACCTCAGACATCATGTGTACT...CTTTGCATAGAGAATTAGGAGTTTGTCTAAGGATATACCAGTTGGCTGTCCTAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000302450.11
CDS-3UTR GCA 90 bp TTAGGACAGCCAACTGGTATATCCTTAGACAAACTCCTAATTCTCTATGCAAAGATAATTATGCTGTTCTaGCTTGGCTATTCGGGGTGT +
Preference number: 4 (lower is better)
Translates to: LGQPTGISLDKLLILYAKIIMLF*LGYSGC
Trigger: ACACCCCGAATAGCCAAGGCAGAACAGCATAATTAT...CTTTGCATAGAGAATTAGGAGTTTGTCTAAGGATATACCAGTTGGCTGTCCTAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000302450.11
CDS-3UTR GCA 90 bp TTAGGACAGCCAACTGGTATATCCTTAGACAAACTCCTAATTCTCTATGCAAAGCTTTCCACAAATAGTTaGCCAGGAGGAAGAAAAAGC +
Preference number: 4 (lower is better)
Translates to: LGQPTGISLDKLLILYAKLSTNS*PGGRKS
Trigger: GCTTTTTCTTCCTCCTGGGCAACTATTTGTGGAAAG...CTTTGCATAGAGAATTAGGAGTTTGTCTAAGGATATACCAGTTGGCTGTCCTAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000302450.11
CDS-3UTR CCA 90 bp ACAGTTCTATTTTTAATTTCTTTAGGAGCCTCCATACCGTTTTCCATAACGGCTTCTTCAGTTTTCCCTTaGCTGCAAGGTACTCCTGAA +
Preference number: 4 (lower is better)
Translates to: TVLFLISLGASIPFSITASSVFP*LQGTPE
Trigger: TTCAGGAGTACCTTGCAGCCAAGGGAAAACTGAAGA...AGCCGTTATGGAAAACGGTATGGAGGCTCCTAAAGAAATTAAAAATAGAACTGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000302450.11
CDS-3UTR CCA 90 bp ATTATGATTCAGGGGTTTGAAACCCCAATGTTACAGGCAGCGCCTCATTTCTACACAGGCAAAACAACATaGTTGGTAACATCATTTTTG +
Preference number: 4 (lower is better)
Translates to: IMIQGFETPMLQAAPHFYTGKTT*LVTSFL
Trigger: CAAAAATGATGTTACCAACCATGTTGTTTTGCCTGT...GTAGAAATGAGGCGCTGCCTGTAACATTGGGGTTTCAAACCCCTGAATCATAAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENST00000435431.5
CDS-3UTR CCA 90 bp TCTATTTTTAATTTCTTTAGGAGCCTCCATACCGTTTTCCATAACGGCTGCCCCTTCTTATGTCTTCTTTaGAGAAATGTCTGCTCAGGT +
Preference number: 4 (lower is better)
Translates to: SIFNFFRSLHTVFHNGCPFLCLL*RNVCSG
Trigger: ACCTGAGCAGACATTTCTCCAAAGAAGACATAAGAA...GGGGCAGCCGTTATGGAAAACGGTATGGAGGCTCCTAAAGAAATTAAAAATAGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000302450.11
CDS-3UTR TCA 90 bp ACAGTTCTATTTTTAATTTCTTTAGGAGCCTCCATACCGTTTTCCATAACGGCTGGTTTCTTTGATGACTaGACTTTACTAAGGGTCCGA +
Preference number: 4 (lower is better)
Translates to: TVLFLISLGASIPFSITAGFFDD*TLLRVR
Trigger: TCGGACCCTTAGTAAAGTTCAGTCATCAAAGAAACC...AGCCGTTATGGAAAACGGTATGGAGGCTCCTAAAGAAATTAAAAATAGAACTGT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000302450.11
CDS-3UTR GCA 90 bp ACAGTTCTATTTTTAATTTCTTTAGGAGCCTCCATACCGTTTTCCATAACGGCTGGAGTCCAAAGTCTGTaGTTTTTGCTGAAAGCCATT +
Preference number: 4 (lower is better)
Translates to: TVLFLISLGASIPFSITAGVQSL*FLLKAI
Trigger: AATGGCTTTCAGCAAAAAGCACAGACTTTGGACTCC...AGCCGTTATGGAAAACGGTATGGAGGCTCCTAAAGAAATTAAAAATAGAACTGT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000302450.11
CDS-3UTR GCA 90 bp TCTATTTTTAATTTCTTTAGGAGCCTCCATACCGTTTTCCATAACGGCTGCCCCTCTGCTCAGGTCCTTTaGCCATTTTTAATTATTAGT +
Preference number: 4 (lower is better)
Translates to: SIFNFFRSLHTVFHNGCPSAQVL*PFLIIS
Trigger: ACTAATAATTAAAAATGGGCAAAGGACCTGAGCAGA...GGGGCAGCCGTTATGGAAAACGGTATGGAGGCTCCTAAAGAAATTAAAAATAGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENST00000302450.11
CDS-3UTR TCA 90 bp TTAGGACAGCCAACTGGTATATCCTTAGACAAACTCCTAATTCTCTATGCAAAGTTCAGTAACAGGGTATaGCCGTATCTTAGTTTCATT +
Preference number: 4 (lower is better)
Translates to: LGQPTGISLDKLLILYAKFSNRV*PYLSFI
Trigger: AATGAAACTAAGATACGGTCATACCCTGTTACTGAA...CTTTGCATAGAGAATTAGGAGTTTGTCTAAGGATATACCAGTTGGCTGTCCTAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000302450.11
CDS-3UTR TCA 90 bp GAGTCAGAAGTAATCCCTTCTGTGGTTCTGTTTGAGTCTTGCAAGATATTAAGATCACACATAAATTTATaGTCTCTGAGCAAAGGCACA +
Preference number: 4 (lower is better)
Translates to: ESEVIPSVVLFESCKILRSHINL*SLSKGT
Trigger: TGTGCCTTTGCTCAGAGATCATAAATTTATGTGTGA...TCTTAATATCTTGCAAGACTCAAACAGAACCACAGAAGGGATTACTTCTGACTC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000435431.5
CDS-3UTR GCA 90 bp TTAGGACAGCCAACTGGTATATCCTTAGACAAACTCCTAATTCTCTATGCAAAGTTTCCTTCGATCCTCTaGTGTTGCCTTCTTTTTAAT +
Preference number: 4 (lower is better)
Translates to: LGQPTGISLDKLLILYAKFPSIL*CCLLFN
Trigger: ATTAAAAAGAAGGCAACAGCAGAGGATCGAAGGAAA...CTTTGCATAGAGAATTAGGAGTTTGTCTAAGGATATACCAGTTGGCTGTCCTAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000302450.11
CDS-3UTR GCA 90 bp GAGTCAGAAGTAATCCCTTCTGTGGTTCTGTTTGAGTCTTGCAAGATATTAAGATTTCCTTCGATCCTCTaGTGTTGCCTTCTTTTTAAT +
Preference number: 4 (lower is better)
Translates to: ESEVIPSVVLFESCKILRFPSIL*CCLLFN
Trigger: ATTAAAAAGAAGGCAACAGCAGAGGATCGAAGGAAA...TCTTAATATCTTGCAAGACTCAAACAGAACCACAGAAGGGATTACTTCTGACTC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000435431.5
CDS-3UTR CCA 90 bp ACAGTTCTATTTTTAATTTCTTTAGGAGCCTCCATACCGTTTTCCATAACGGCTATATTTGGGTTTGTTTaGGTCCCATTTACGGTTGTG +
Preference number: 4 (lower is better)
Translates to: TVLFLISLGASIPFSITAIFGFV*VPFTVV
Trigger: CACAACCGTAAATGGGACCCAAACAAACCCAAATAT...AGCCGTTATGGAAAACGGTATGGAGGCTCCTAAAGAAATTAAAAATAGAACTGT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000302450.11
CDS-3UTR TCA 90 bp ACAGTTCTATTTTTAATTTCTTTAGGAGCCTCCATACCGTTTTCCATAACGGCTTCACACATAAATTTATaGTCTCTGAGCAAAGGCACA +
Preference number: 4 (lower is better)
Translates to: TVLFLISLGASIPFSITASHINL*SLSKGT
Trigger: TGTGCCTTTGCTCAGAGATCATAAATTTATGTGTGA...AGCCGTTATGGAAAACGGTATGGAGGCTCCTAAAGAAATTAAAAATAGAACTGT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000302450.11
CDS-3UTR CCA 90 bp GAGTCAGAAGTAATCCCTTCTGTGGTTCTGTTTGAGTCTTGCAAGATATTAAGAATTTTAGATAAGGCTTaGTGTTTTGGCTCTTCAGTT +
Preference number: 4 (lower is better)
Translates to: ESEVIPSVVLFESCKILRILDKA*CFGSSV
Trigger: AACTGAAGAGCCAAAACACCAAGCCTTATCTAAAAT...TCTTAATATCTTGCAAGACTCAAACAGAACCACAGAAGGGATTACTTCTGACTC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000435431.5
CDS-3UTR CCA 90 bp TTAGGACAGCCAACTGGTATATCCTTAGACAAACTCCTAATTCTCTATGCAAAGTCTGGCAATTATTCTTaGATTTTAGATAAGGCTTGG +
Preference number: 4 (lower is better)
Translates to: LGQPTGISLDKLLILYAKSGNYS*ILDKAW
Trigger: CCAAGCCTTATCTAAAATCCAAGAATAATTGCCAGA...CTTTGCATAGAGAATTAGGAGTTTGTCTAAGGATATACCAGTTGGCTGTCCTAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000302450.11
CDS-3UTR GCA 90 bp ACAGTTCTATTTTTAATTTCTTTAGGAGCCTCCATACCGTTTTCCATAACGGCTACTCCTAATTCTCTATaGAAAGCCATTATCATGGTT +
Preference number: 4 (lower is better)
Translates to: TVLFLISLGASIPFSITATPNSL*KAIIMV
Trigger: AACCATGATAATGGCTTTGCATAGAGAATTAGGAGT...AGCCGTTATGGAAAACGGTATGGAGGCTCCTAAAGAAATTAAAAATAGAACTGT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000302450.11
CDS-3UTR CCA 90 bp ACAGTTCTATTTTTAATTTCTTTAGGAGCCTCCATACCGTTTTCCATAACGGCTATTTTAGATAAGGCTTaGTGTTTTGGCTCTTCAGTT +
Preference number: 4 (lower is better)
Translates to: TVLFLISLGASIPFSITAILDKA*CFGSSV
Trigger: AACTGAAGAGCCAAAACACCAAGCCTTATCTAAAAT...AGCCGTTATGGAAAACGGTATGGAGGCTCCTAAAGAAATTAAAAATAGAACTGT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENST00000302450.11
CDS TCA 90 bp ACAGCGGCAGCAGCGGTAGGCCCGGGCCCCACCATGACTCTTCAGTaGCAGTTTTTCTTCAAACGCCGCGCCTGTAGCCAGGACCGGCGT +
Preference number: 5 (lower is better)
Translates to: TAAAAVGPGPTMTLQ*QFFFKRRACSQDRR
Trigger: ACGCCGGTCCTGGCTACAGGCGCGGCGTTTGAAGAAAAACTGTCACTGAAGAGTCATGGTGGGGCCCGGGCCTACCGCTGCTGCCGCTGT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000461876.5
CDS-3UTR CAA 90 bp CCACAAATAGTTGCCCAGGAGGAAGAAAAAGCAACCTACAACAGTCTCTGGGGCTTATGCTGTTCTGCCTaGGCTATTCGGGGTGTCGCC +
Preference number: 5 (lower is better)
Translates to: PQIVAQEEEKATYNSLWGLCCSA*AIRGVA
Trigger: GGCGACACCCCGAATAGCCAAGGCAGAACAGCATAA...GCCCCAGAGACTGTTGTAGGTTGCTTTTTCTTCCTCCTGGGCAACTATTTGTGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000302450.11
ENST00000435431.5
CDS-3UTR CAA 90 bp TGCATCTCCCCATTTCCTCTTCCCCAATCTGTGGTAAGCACTTTCTCTGTGTACGGGTGTCGCCGTGACTaGTTCCCTCTCTTTTGGAGA +
Preference number: 5 (lower is better)
Translates to: CISPFPLPQSVVSTFSVYGCRRD*FPLFWR
Trigger: TCTCCAAAAGAGAGGGAACAAGTCACGGCGACACCC...GTACACAGAGAAAGTGCTTACCACAGATTGGGGAAGAGGAAATGGGGAGATGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000302450.11
CDS-3UTR CAA 90 bp TCCACAAATAGTTGCCCAGGAGGAAGAAAAAGCAACCTACAACAGTCTCTGGGGTTATGCTGTTCTGCCTaGGCTATTCGGGGTGTCGCC +
Preference number: 5 (lower is better)
Translates to: STNSCPGGRKSNLQQSLGLCCSA*AIRGVA
Trigger: GGCGACACCCCGAATAGCCAAGGCAGAACAGCATAA...CCCCAGAGACTGTTGTAGGTTGCTTTTTCTTCCTCCTGGGCAACTATTTGTGGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000302450.11
ENST00000435431.5
CDS GCA 90 bp AGCTTTCTCTGCCGCTCTTCTCATCTGAACGGAGTTGCCCTGTTTTaGTCTCTGATGCTCATGTATCTATCCTTAGAGACAGCTTGGCGG +
Preference number: 5 (lower is better)
Translates to: SFLCRSSHLNGVALF*SLMLMYLSLETAWR
Trigger: CCGCCAAGCTGTCTCTAAGGATAGATACATGAGCATCAGAGAGCAAAACAGGGCAACTCCGTTCAGATGAGAAGAGCGGCAGAGAAAGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000497357.1
CDS-3UTR CAA 90 bp CCACAAATAGTTGCCCAGGAGGAAGAAAAAGCAACCTACAACAGTCTCTGGGGCTCTGAAGTCAGCCTTTaGCCCAGAAGTTTTGGTGGC +
Preference number: 5 (lower is better)
Translates to: PQIVAQEEEKATYNSLWGSEVSL*PRSFGG
Trigger: GCCACCAAAACTTCTGGGCAAAAGGCTGACTTCAGA...GCCCCAGAGACTGTTGTAGGTTGCTTTTTCTTCCTCCTGGGCAACTATTTGTGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000302450.11
ENST00000435431.5
CDS-3UTR CAA 90 bp CCACAAATAGTTGCCCAGGAGGAAGAAAAAGCAACCTACAACAGTCTCTGGGGCTTGACAGTTCTCCTGTaGTGGACGATCCAGCTTCAC +
Preference number: 5 (lower is better)
Translates to: PQIVAQEEEKATYNSLWGLTVLL*WTIQLH
Trigger: GTGAAGCTGGATCGTCCACAACAGGAGAACTGTCAA...GCCCCAGAGACTGTTGTAGGTTGCTTTTTCTTCCTCCTGGGCAACTATTTGTGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000302450.11
ENST00000435431.5
CDS-3UTR CAA 90 bp TGCATCTCCCCATTTCCTCTTCCCCAATCTGTGGTAAGCACTTTCTCTGTGTACCGGGGTTTCACCATGTaGGTCAAGCTGGTCTTGAAC +
Preference number: 5 (lower is better)
Translates to: CISPFPLPQSVVSTFSVYRGFTM*VKLVLN
Trigger: GTTCAAGACCAGCTTGACCAACATGGTGAAACCCCG...GTACACAGAGAAAGTGCTTACCACAGATTGGGGAAGAGGAAATGGGGAGATGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000302450.11
CDS-3UTR CAA 90 bp CCACAAATAGTTGCCCAGGAGGAAGAAAAAGCAACCTACAACAGTCTCTGGGGCGAGGCTGATAGACCTTaGATCAAAGTCCATTCTCCT +
Preference number: 5 (lower is better)
Translates to: PQIVAQEEEKATYNSLWGEADRP*IKVHSP
Trigger: AGGAGAATGGACTTTGATCAAAGGTCTATCAGCCTC...GCCCCAGAGACTGTTGTAGGTTGCTTTTTCTTCCTCCTGGGCAACTATTTGTGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000302450.11
CDS-3UTR CAA 90 bp CCACAAATAGTTGCCCAGGAGGAAGAAAAAGCAACCTACAACAGTCTCTGGGGCATGGACCTTTTAGGTTaGACAGGCAAAACAACATGG +
Preference number: 5 (lower is better)
Translates to: PQIVAQEEEKATYNSLWGMDLLG*TGKTTW
Trigger: CCATGTTGTTTTGCCTGTCAAACCTAAAAGGTCCAT...GCCCCAGAGACTGTTGTAGGTTGCTTTTTCTTCCTCCTGGGCAACTATTTGTGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000302450.11
ENST00000435431.5
CDS-3UTR CAA 90 bp TCCACAAATAGTTGCCCAGGAGGAAGAAAAAGCAACCTACAACAGTCTCTGGGGTCCAGCTTCACACTGTaGAAAACTCTTGCTAGAAGG +
Preference number: 5 (lower is better)
Translates to: STNSCPGGRKSNLQQSLGSSFTL*KTLARR
Trigger: CCTTCTAGCAAGAGTTTTCAACAGTGTGAAGCTGGA...CCCCAGAGACTGTTGTAGGTTGCTTTTTCTTCCTCCTGGGCAACTATTTGTGGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000302450.11
ENST00000435431.5
CDS-3UTR CAA 90 bp TCCACAAATAGTTGCCCAGGAGGAAGAAAAAGCAACCTACAACAGTCTCTGGGGGCTGGACTTCTGATCTaGCTTGATGTTTGGATGTCT +
Preference number: 5 (lower is better)
Translates to: STNSCPGGRKSNLQQSLGAGLLI*LDVWMS
Trigger: AGACATCCAAACATCAAGCAAGATCAGAAGTCCAGC...CCCCAGAGACTGTTGTAGGTTGCTTTTTCTTCCTCCTGGGCAACTATTTGTGGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000302450.11
CDS-3UTR CAA 90 bp TGCATCTCCCCATTTCCTCTTCCCCAATCTGTGGTAAGCACTTTCTCTGTGTACAACTTTCCGCAACTCTaGTATTGGTGTTGCCCCATT +
Preference number: 5 (lower is better)
Translates to: CISPFPLPQSVVSTFSVYNFPQL*YWCCPI
Trigger: AATGGGGCAACACCAATACAAGAGTTGCGGAAAGTT...GTACACAGAGAAAGTGCTTACCACAGATTGGGGAAGAGGAAATGGGGAGATGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000302450.11
CDS-3UTR CAA 90 bp CCACAAATAGTTGCCCAGGAGGAAGAAAAAGCAACCTACAACAGTCTCTGGGGCTCCACATCTTGGCTATaGAGAATAACACTGCCACAA +
Preference number: 5 (lower is better)
Translates to: PQIVAQEEEKATYNSLWGSTSWL*RITLPQ
Trigger: TTGTGGCAGTGTTATTCTCAATAGCCAAGATGTGGA...GCCCCAGAGACTGTTGTAGGTTGCTTTTTCTTCCTCCTGGGCAACTATTTGTGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000302450.11
CDS-3UTR CAA 90 bp TCCACAAATAGTTGCCCAGGAGGAAGAAAAAGCAACCTACAACAGTCTCTGGGGATAAGGCTTGGTGTTTaGGCTCTTCAGTTTTCCCTT +
Preference number: 5 (lower is better)
Translates to: STNSCPGGRKSNLQQSLGIRLGV*ALQFSL
Trigger: AAGGGAAAACTGAAGAGCCAAAACACCAAGCCTTAT...CCCCAGAGACTGTTGTAGGTTGCTTTTTCTTCCTCCTGGGCAACTATTTGTGGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000302450.11
ENST00000435431.5
CDS-3UTR CAA 90 bp TCCACAAATAGTTGCCCAGGAGGAAGAAAAAGCAACCTACAACAGTCTCTGGGGTGGGAAAGTCCTGCTTaGTGTTTCTCCAACAAATTG +
Preference number: 5 (lower is better)
Translates to: STNSCPGGRKSNLQQSLGWESPA*CFSNKL
Trigger: CAATTTGTTGGAGAAACACAAAGCAGGACTTTCCCA...CCCCAGAGACTGTTGTAGGTTGCTTTTTCTTCCTCCTGGGCAACTATTTGTGGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000302450.11
CDS-3UTR CAA 90 bp TTAGGACAGCCAACTGGTATATCCTTAGACAAACTCCTAATTCTCTATGCAAAGGAGAGGGAACCGTCCTaGAGGGTTTTACTCCTGGTC +
Preference number: 5 (lower is better)
Translates to: LGQPTGISLDKLLILYAKEREPS*RVLLLV
Trigger: GACCAGGAGTAAAACCCTCAAGGACGGTTCCCTCTC...CTTTGCATAGAGAATTAGGAGTTTGTCTAAGGATATACCAGTTGGCTGTCCTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000302450.11
CDS-3UTR CAA 90 bp CCACAAATAGTTGCCCAGGAGGAAGAAAAAGCAACCTACAACAGTCTCTGGGGCAATATTTGGGTTTGTTaGGGTCCCATTTACGGTTGT +
Preference number: 5 (lower is better)
Translates to: PQIVAQEEEKATYNSLWGNIWVC*GPIYGC
Trigger: ACAACCGTAAATGGGACCCAAACAAACCCAAATATT...GCCCCAGAGACTGTTGTAGGTTGCTTTTTCTTCCTCCTGGGCAACTATTTGTGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000302450.11
ENST00000435431.5
CDS-3UTR CAA 90 bp GAGTCAGAAGTAATCCCTTCTGTGGTTCTGTTTGAGTCTTGCAAGATATTAAGAGGGTGTCGCCGTGACTaGTTCCCTCTCTTTTGGAGA +
Preference number: 5 (lower is better)
Translates to: ESEVIPSVVLFESCKILRGCRRD*FPLFWR
Trigger: TCTCCAAAAGAGAGGGAACAAGTCACGGCGACACCC...TCTTAATATCTTGCAAGACTCAAACAGAACCACAGAAGGGATTACTTCTGACTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000435431.5
CDS-3UTR CAA 90 bp TGCATCTCCCCATTTCCTCTTCCCCAATCTGTGGTAAGCACTTTCTCTGTGTACGATAAATTTCATGTCTaGCACTTCCGGCATCCCATT +
Preference number: 5 (lower is better)
Translates to: CISPFPLPQSVVSTFSVYDKFHV*HFRHPI
Trigger: AATGGGATGCCGGAAGTGCAAGACATGAAATTTATC...GTACACAGAGAAAGTGCTTACCACAGATTGGGGAAGAGGAAATGGGGAGATGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000302450.11
CDS-3UTR CAA 90 bp TCCACAAATAGTTGCCCAGGAGGAAGAAAAAGCAACCTACAACAGTCTCTGGGGGGCAAAACAACATGGTaGGTAACATCATTTTTGGGT +
Preference number: 5 (lower is better)
Translates to: STNSCPGGRKSNLQQSLGGKTTW*VTSFLG
Trigger: ACCCAAAAATGATGTTACCAACCATGTTGTTTTGCC...CCCCAGAGACTGTTGTAGGTTGCTTTTTCTTCCTCCTGGGCAACTATTTGTGGA
44% GC, longest homopolymer 6 nt, total homopolymer stretches 20 nt.
Matches the following 2 transcripts:
ENST00000302450.11
ENST00000435431.5
CDS-3UTR CAA 90 bp TGCATCTCCCCATTTCCTCTTCCCCAATCTGTGGTAAGCACTTTCTCTGTGTACCTATTAACTGAACTTTaGCCCAAGGCTTGTTTAGGA +
Preference number: 5 (lower is better)
Translates to: CISPFPLPQSVVSTFSVYLLTEL*PKACLG
Trigger: TCCTAAACAAGCCTTGGGCAAAAGTTCAGTTAATAG...GTACACAGAGAAAGTGCTTACCACAGATTGGGGAAGAGGAAATGGGGAGATGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000302450.11
CDS-3UTR CAA 90 bp CCACAAATAGTTGCCCAGGAGGAAGAAAAAGCAACCTACAACAGTCTCTGGGGCCAAAGTCTGTGCTTTTaGCTGAAAGCCATTATTGTT +
Preference number: 5 (lower is better)
Translates to: PQIVAQEEEKATYNSLWGQSLCF*LKAIIV
Trigger: AACAATAATGGCTTTCAGCAAAAAGCACAGACTTTG...GCCCCAGAGACTGTTGTAGGTTGCTTTTTCTTCCTCCTGGGCAACTATTTGTGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000302450.11
CDS-3UTR CAA 90 bp TGCATCTCCCCATTTCCTCTTCCCCAATCTGTGGTAAGCACTTTCTCTGTGTACAATATTTGGGTTTGTTaGGGTCCCATTTACGGTTGT +
Preference number: 5 (lower is better)
Translates to: CISPFPLPQSVVSTFSVYNIWVC*GPIYGC
Trigger: ACAACCGTAAATGGGACCCAAACAAACCCAAATATT...GTACACAGAGAAAGTGCTTACCACAGATTGGGGAAGAGGAAATGGGGAGATGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000302450.11
CDS-3UTR CAA 90 bp TCCACAAATAGTTGCCCAGGAGGAAGAAAAAGCAACCTACAACAGTCTCTGGGGTTTCTTATGTCTTCTTaGGAGAAATGTCTGCTCAGG +
Preference number: 5 (lower is better)
Translates to: STNSCPGGRKSNLQQSLGFLMSS*EKCLLR
Trigger: CCTGAGCAGACATTTCTCCAAAGAAGACATAAGAAA...CCCCAGAGACTGTTGTAGGTTGCTTTTTCTTCCTCCTGGGCAACTATTTGTGGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000302450.11
CDS-3UTR CAA 90 bp TGCATCTCCCCATTTCCTCTTCCCCAATCTGTGGTAAGCACTTTCTCTGTGTACATGCAGTATTTTTCCTaGGGTCTGGCTTATTTCACT +
Preference number: 5 (lower is better)
Translates to: CISPFPLPQSVVSTFSVYMQYFS*GLAYFT
Trigger: AGTGAAATAAGCCAGACCCAAGGAAAAATACTGCAT...GTACACAGAGAAAGTGCTTACCACAGATTGGGGAAGAGGAAATGGGGAGATGCA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000302450.11
CDS-3UTR CAA 90 bp TTAGGACAGCCAACTGGTATATCCTTAGACAAACTCCTAATTCTCTATGCAAAGTTTTGCCCAGAAGTTTaGGTGGCTCCAACTTCGGCT +
Preference number: 5 (lower is better)
Translates to: LGQPTGISLDKLLILYAKFCPEV*VAPTSA
Trigger: AGCCGAAGTTGGAGCCACCAAAACTTCTGGGCAAAA...CTTTGCATAGAGAATTAGGAGTTTGTCTAAGGATATACCAGTTGGCTGTCCTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000302450.11
CDS-3UTR CAA 90 bp GAGTCAGAAGTAATCCCTTCTGTGGTTCTGTTTGAGTCTTGCAAGATATTAAGATTTTGCCCAGAAGTTTaGGTGGCTCCAACTTCGGCT +
Preference number: 5 (lower is better)
Translates to: ESEVIPSVVLFESCKILRFCPEV*VAPTSA
Trigger: AGCCGAAGTTGGAGCCACCAAAACTTCTGGGCAAAA...TCTTAATATCTTGCAAGACTCAAACAGAACCACAGAAGGGATTACTTCTGACTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000435431.5
CDS-3UTR CAA 90 bp TCAGCTTCAGGAATGCTGGACAATATGTTAAGTATTTCATTAGAAGGTACACCCTCTGAAGTCAGCCTTTaGCCCAGAAGTTTTGGTGGC +
Preference number: 5 (lower is better)
Translates to: SASGMLDNMLSISLEGTPSEVSL*PRSFGG
Trigger: GCCACCAAAACTTCTGGGCAAAAGGCTGACTTCAGA...GGGTGTACCTTCTAATGAAATACTTAACATATTGTCCAGCATTCCTGAAGCTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000435431.5
CDS-3UTR CAA 90 bp TTAGGACAGCCAACTGGTATATCCTTAGACAAACTCCTAATTCTCTATGCAAAGTTGACAGTTCTCCTGTaGTGGACGATCCAGCTTCAC +
Preference number: 5 (lower is better)
Translates to: LGQPTGISLDKLLILYAKLTVLL*WTIQLH
Trigger: GTGAAGCTGGATCGTCCACAACAGGAGAACTGTCAA...CTTTGCATAGAGAATTAGGAGTTTGTCTAAGGATATACCAGTTGGCTGTCCTAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000302450.11
CDS-3UTR CAA 90 bp ACAGTTCTATTTTTAATTTCTTTAGGAGCCTCCATACCGTTTTCCATAACGGCTGGGTATGTTCTGGGTTaGGTGTGCTTCACTCTCTGT +
Preference number: 5 (lower is better)
Translates to: TVLFLISLGASIPFSITAGYVLG*VCFTLC
Trigger: ACAGAGAGTGAAGCACACCAAACCCAGAACATACCC...AGCCGTTATGGAAAACGGTATGGAGGCTCCTAAAGAAATTAAAAATAGAACTGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000302450.11
CDS-3UTR CAA 90 bp TCTATTTTTAATTTCTTTAGGAGCCTCCATACCGTTTTCCATAACGGCTGCCCCATGGGGAGAGAAAATTaGAGAGTAAGCCCAGTGAAT +
Preference number: 5 (lower is better)
Translates to: SIFNFFRSLHTVFHNGCPMGREN*RVSPVN
Trigger: ATTCACTGGGCTTACTCTCAAATTTTCTCTCCCCAT...GGGGCAGCCGTTATGGAAAACGGTATGGAGGCTCCTAAAGAAATTAAAAATAGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 21 nt.
Matches the following 1 transcripts:
ENST00000302450.11
CDS-3UTR CAA 90 bp TTAGGACAGCCAACTGGTATATCCTTAGACAAACTCCTAATTCTCTATGCAAAGCCAGGTCCATCTATGTaGTGGCAAATGGCAAGAACT +
Preference number: 5 (lower is better)
Translates to: LGQPTGISLDKLLILYAKPGPSM*WQMART
Trigger: AGTTCTTGCCATTTGCCACAACATAGATGGACCTGG...CTTTGCATAGAGAATTAGGAGTTTGTCTAAGGATATACCAGTTGGCTGTCCTAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000302450.11
CDS CCA 90 bp GCATCAACAGGAATAATGGATGAAACAAAACAACGGTGCGTATCTTaGAGAAAGTGGCATCTGAGCAGGAGTATTTTGAAAGGTAGGAAA +
Preference number: 5 (lower is better)
Translates to: ASTGIMDETKQRCVS*RKWHLSRSILKGRK
Trigger: TTTCCTACCTTTCAAAATACTCCTGCTCAGATGCCACTTTCTCCAAGATACGCACCGTTGTTTTGTTTCATCCATTATTCCTGTTGATGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000497357.1
CDS-3UTR CAA 90 bp TTAGGACAGCCAACTGGTATATCCTTAGACAAACTCCTAATTCTCTATGCAAAGTCCAGCTTCACACTGTaGAAAACTCTTGCTAGAAGG +
Preference number: 5 (lower is better)
Translates to: LGQPTGISLDKLLILYAKSSFTL*KTLARR
Trigger: CCTTCTAGCAAGAGTTTTCAACAGTGTGAAGCTGGA...CTTTGCATAGAGAATTAGGAGTTTGTCTAAGGATATACCAGTTGGCTGTCCTAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000302450.11
CDS-3UTR CAA 90 bp TTAGGACAGCCAACTGGTATATCCTTAGACAAACTCCTAATTCTCTATGCAAAGCTGAGGTATACAAACTaGGCTGGACTTCTGATCTTG +
Preference number: 5 (lower is better)
Translates to: LGQPTGISLDKLLILYAKLRYTN*AGLLIL
Trigger: CAAGATCAGAAGTCCAGCCAAGTTTGTATACCTCAG...CTTTGCATAGAGAATTAGGAGTTTGTCTAAGGATATACCAGTTGGCTGTCCTAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000302450.11
CDS-3UTR CAA 90 bp GAGTCAGAAGTAATCCCTTCTGTGGTTCTGTTTGAGTCTTGCAAGATATTAAGAAACTTTCCGCAACTCTaGTATTGGTGTTGCCCCATT +
Preference number: 5 (lower is better)
Translates to: ESEVIPSVVLFESCKILRNFPQL*YWCCPI
Trigger: AATGGGGCAACACCAATACAAGAGTTGCGGAAAGTT...TCTTAATATCTTGCAAGACTCAAACAGAACCACAGAAGGGATTACTTCTGACTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000435431.5
CDS-3UTR CAA 90 bp TCTATTTTTAATTTCTTTAGGAGCCTCCATACCGTTTTCCATAACGGCTGCCCCAAAAGTCCCATTATATaGTGGGACCAACCTTCTGAT +
Preference number: 5 (lower is better)
Translates to: SIFNFFRSLHTVFHNGCPKSPII*WDQPSD
Trigger: ATCAGAAGGTTGGTCCCACAATATAATGGGACTTTT...GGGGCAGCCGTTATGGAAAACGGTATGGAGGCTCCTAAAGAAATTAAAAATAGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENST00000302450.11
CDS TCA 90 bp TGTTCTGGGTTTGGTGTGCTTCACTCTCTGTTCAGTAACAGGGTATaGCCGTATCTTAGTTTCATTTGGTCTTTCATATTGACTCCTATT +
Preference number: 5 (lower is better)
Translates to: CSGFGVLHSLFSNRV*PYLSFIWSFILTPI
Trigger: AATAGGAGTCAATATGAAAGACCAAATGAAACTAAGATACGGTCATACCCTGTTACTGAACAGAGAGTGAAGCACACCAAACCCAGAACA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000302450.11
CDS-3UTR CAA 90 bp GAGTCAGAAGTAATCCCTTCTGTGGTTCTGTTTGAGTCTTGCAAGATATTAAGAATGGACCTTTTAGGTTaGACAGGCAAAACAACATGG +
Preference number: 5 (lower is better)
Translates to: ESEVIPSVVLFESCKILRMDLLG*TGKTTW
Trigger: CCATGTTGTTTTGCCTGTCAAACCTAAAAGGTCCAT...TCTTAATATCTTGCAAGACTCAAACAGAACCACAGAAGGGATTACTTCTGACTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000435431.5
CDS-3UTR CAA 90 bp TTAGGACAGCCAACTGGTATATCCTTAGACAAACTCCTAATTCTCTATGCAAAGTCTGGCTTATGGCTTTaGACTTTTGCAGTACACATG +
Preference number: 5 (lower is better)
Translates to: LGQPTGISLDKLLILYAKSGLWL*TFAVHM
Trigger: CATGTGTACTGCAAAAGTCAAAAGCCATAAGCCAGA...CTTTGCATAGAGAATTAGGAGTTTGTCTAAGGATATACCAGTTGGCTGTCCTAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000302450.11
CDS-3UTR CAA 90 bp TCAGCTTCAGGAATGCTGGACAATATGTTAAGTATTTCATTAGAAGGTACACCCATGGGGAGAGAAAATTaGAGAGTAAGCCCAGTGAAT +
Preference number: 5 (lower is better)
Translates to: SASGMLDNMLSISLEGTPMGREN*RVSPVN
Trigger: ATTCACTGGGCTTACTCTCAAATTTTCTCTCCCCAT...GGGTGTACCTTCTAATGAAATACTTAACATATTGTCCAGCATTCCTGAAGCTGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000435431.5
CDS-3UTR CAA 90 bp TCTATTTTTAATTTCTTTAGGAGCCTCCATACCGTTTTCCATAACGGCTGCCCCGTGATTTCATCTTCTTaGGGTACATACTTACTCAGA +
Preference number: 5 (lower is better)
Translates to: SIFNFFRSLHTVFHNGCPVISSS*GTYLLR
Trigger: TCTGAGTAAGTATGTACCCAAAGAAGATGAAATCAC...GGGGCAGCCGTTATGGAAAACGGTATGGAGGCTCCTAAAGAAATTAAAAATAGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000302450.11
CDS-3UTR CAA 90 bp TTAGGACAGCCAACTGGTATATCCTTAGACAAACTCCTAATTCTCTATGCAAAGGGCAAAACAACATGGTaGGTAACATCATTTTTGGGT +
Preference number: 5 (lower is better)
Translates to: LGQPTGISLDKLLILYAKGKTTW*VTSFLG
Trigger: ACCCAAAAATGATGTTACCAACCATGTTGTTTTGCC...CTTTGCATAGAGAATTAGGAGTTTGTCTAAGGATATACCAGTTGGCTGTCCTAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000302450.11
CDS-3UTR CAA 90 bp TTAGGACAGCCAACTGGTATATCCTTAGACAAACTCCTAATTCTCTATGCAAAGTACTTGCCAACAACTTaGCTTTGCAGATCCAGAATT +
Preference number: 5 (lower is better)
Translates to: LGQPTGISLDKLLILYAKYLPTT*LCRSRI
Trigger: AATTCTGGATCTGCAAAGCAAAGTTGTTGGCAAGTA...CTTTGCATAGAGAATTAGGAGTTTGTCTAAGGATATACCAGTTGGCTGTCCTAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000302450.11
CDS-3UTR CAA 90 bp TCAGCTTCAGGAATGCTGGACAATATGTTAAGTATTTCATTAGAAGGTACACCCTACTTGCCAACAACTTaGCTTTGCAGATCCAGAATT +
Preference number: 5 (lower is better)
Translates to: SASGMLDNMLSISLEGTPYLPTT*LCRSRI
Trigger: AATTCTGGATCTGCAAAGCAAAGTTGTTGGCAAGTA...GGGTGTACCTTCTAATGAAATACTTAACATATTGTCCAGCATTCCTGAAGCTGA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000435431.5
CDS-3UTR CAA 90 bp TTAGGACAGCCAACTGGTATATCCTTAGACAAACTCCTAATTCTCTATGCAAAGATTTTATCTGCTATTTaGTATCCTTGGCCTGCATCT +
Preference number: 5 (lower is better)
Translates to: LGQPTGISLDKLLILYAKILSAI*YPWPAS
Trigger: AGATGCAGGCCAAGGATACAAAATAGCAGATAAAAT...CTTTGCATAGAGAATTAGGAGTTTGTCTAAGGATATACCAGTTGGCTGTCCTAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000302450.11
CDS-3UTR CAA 90 bp TTAGGACAGCCAACTGGTATATCCTTAGACAAACTCCTAATTCTCTATGCAAAGGCCCTATCTCTAGACTaGTTCATTTTATCTGCTATT +
Preference number: 5 (lower is better)
Translates to: LGQPTGISLDKLLILYAKALSLD*FILSAI
Trigger: AATAGCAGATAAAATGAACAAGTCTAGAGATAGGGC...CTTTGCATAGAGAATTAGGAGTTTGTCTAAGGATATACCAGTTGGCTGTCCTAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000302450.11
CDS TCA 72 bp GCAGCGGTAGGCCCGGGCCCCACCATGACTCTTCAGTaGCAGTTTTTCTTCAAACGCCGCGCCTGTAGCCAG +
Preference number: 6 (lower is better)
Translates to: AAVGPGPTMTLQ*QFFFKRRACSQ
Trigger: CTGGCTACAGGCGCGGCGTTTGAAGAAAAACTGTCACTGAAGAGTCATGGTGGGGCCCGGGCCTACCGCTGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000461876.5
CDS TCA 72 bp AGAGACAGCTTGGCGGGCAATGTAGAGCGTAGGGGCTaGCATAGGGGGTTGGAGTCCCACCTCCGTGACTTC +
Preference number: 6 (lower is better)
Translates to: RDSLAGNVERRG*HRGLESHLRDF
Trigger: GAAGTCACGGAGGTGGGACTCCAACCCCCTATGTCAGCCCCTACGCTCTACATTGCCCGCCAAGCTGTCTCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000497357.1
CDS CCA 72 bp TTGCCCAGAAGTTTTGGTGGCTCCAACTTCGGCTTCTaGGACCCTGCAGTATTAGGTGGTCTGGGCTGGAGT +
Preference number: 6 (lower is better)
Translates to: LPRSFGGSNFGF*DPAVLGGLGWS
Trigger: ACTCCAGCCCAGACCACCTAATACTGCAGGGTCCCAGAAGCCGAAGTTGGAGCCACCAAAACTTCTGGGCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000302450.11
ENST00000435431.5
ENST00000461876.5
ENST00000481732.5
CDS GCA 72 bp AGGCTTGGTGTTTTGGCTCTTCAGTTTTCCCTTGGCTaGAAGGTACTCCTGAAGCTTTCTCTGCCGCTCTTC +
Preference number: 6 (lower is better)
Translates to: RLGVLALQFSLG*KVLLKLSLPLF
Trigger: GAAGAGCGGCAGAGAAAGCTTCAGGAGTACCTTGCAGCCAAGGGAAAACTGAAGAGCCAAAACACCAAGCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000302450.11
ENST00000435431.5
ENST00000481732.5
ENST00000497357.1
CDS TCA 72 bp ACTAAGGGTCCGAATAAAGTGAGAGGGAACCGTCCTTaGGGGTTTTACTCCTGGTCTTGCAAGATCTGCTCC +
Preference number: 6 (lower is better)
Translates to: TKGPNKVRGNRP*GFYSWSCKICS
Trigger: GGAGCAGATCTTGCAAGACCAGGAGTAAAACCCTCAAGGACGGTTCCCTCTCACTTTATTCGGACCCTTAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000302450.11
CDS CAA 90 bp AAGCTTTCTCTGCCGCTCTTCTCATCTGAACGGAGTTGCCCTGTTTaGCTCTCTGATGCTCATGTATCTATCCTTAGAGACAGCTTGGCG +
Preference number: 6 (lower is better)
Translates to: KLSLPLFSSERSCPV*LSDAHVSILRDSLA
Trigger: CGCCAAGCTGTCTCTAAGGATAGATACATGAGCATCAGAGAGCAAAACAGGGCAACTCCGTTCAGATGAGAAGAGCGGCAGAGAAAGCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000497357.1
CDS CAA 72 bp CTGCCGCTCTTCTCATCTGAACGGAGTTGCCCTGTTTaGCTCTCTGATGCTCATGTATCTATCCTTAGAGAC +
Preference number: 6 (lower is better)
Translates to: LPLFSSERSCPV*LSDAHVSILRD
Trigger: GTCTCTAAGGATAGATACATGAGCATCAGAGAGCAAAACAGGGCAACTCCGTTCAGATGAGAAGAGCGGCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000497357.1
CDS GCA 72 bp TGCCGCTCTTCTCATCTGAACGGAGTTGCCCTGTTTTaGTCTCTGATGCTCATGTATCTATCCTTAGAGACA +
Preference number: 6 (lower is better)
Translates to: CRSSHLNGVALF*SLMLMYLSLET
Trigger: TGTCTCTAAGGATAGATACATGAGCATCAGAGAGCAAAACAGGGCAACTCCGTTCAGATGAGAAGAGCGGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000497357.1
CDS GCA 72 bp AAGCTTTCTCTGCCGCTCTTCTCATCTGAACGGAGTTaGCCTGTTTTGCTCTCTGATGCTCATGTATCTATC +
Preference number: 6 (lower is better)
Translates to: KLSLPLFSSERS*PVLLSDAHVSI
Trigger: GATAGATACATGAGCATCAGAGAGCAAAACAGGGCAACTCCGTTCAGATGAGAAGAGCGGCAGAGAAAGCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000497357.1
CDS CAA 72 bp CAGTTCTCCTGTTGTGGACGATCCAGCTTCACACTGTaGAAAACTCTTGCTAGAAGGCTTAGAGTATGGGTT +
Preference number: 6 (lower is better)
Translates to: QFSCCGRSSFTL*KTLARRLRVWV
Trigger: AACCCATACTCTAAGCCTTCTAGCAAGAGTTTTCAACAGTGTGAAGCTGGATCGTCCACAACAGGAGAACTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000302450.11
ENST00000435431.5
ENST00000461876.5
ENST00000481732.5
CDS TCA 72 bp TGCTTGATGTTTGGATGTCTGTTGTTATATTCACCCTaGAGCAAACTGGGGTATGTTCTGGGTTTGGTGTGC +
Preference number: 6 (lower is better)
Translates to: CLMFGCLLLYSP*SKLGYVLGLVC
Trigger: GCACACCAAACCCAGAACATACCCCAGTTTGCTTCAGGGTGAATATAACAACAGACATCCAAACATCAAGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000302450.11
CDS CAA 72 bp CTCTGCTGTTGCCTTCTTTTTAATATTTGGGTTTGTTaGGGTCCCATTTACGGTTGTGACATCAGCTTGAGT +
Preference number: 6 (lower is better)
Translates to: LCCCLLFNIWVC*GPIYGCDISLS
Trigger: ACTCAAGCTGATGTCACAACCGTAAATGGGACCCAAACAAACCCAAATATTAAAAAGAAGGCAACAGCAGAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000302450.11
ENST00000435431.5
ENST00000474331.1
CDS CCA 72 bp GGAATAATGGATGAAACAAAACAACGGTGCGTATCTTaGAGAAAGTGGCATCTGAGCAGGAGTATTTTGAAA +
Preference number: 6 (lower is better)
Translates to: GIMDETKQRCVS*RKWHLSRSILK
Trigger: TTTCAAAATACTCCTGCTCAGATGCCACTTTCTCCAAGATACGCACCGTTGTTTTGTTTCATCCATTATTCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000497357.1
CDS CAA 72 bp TGTCTGAGGTATACAAACTTGGCTGGACTTCTGATCTaGCTTGATGTTTGGATGTCTGTTGTTATATTCACC +
Preference number: 6 (lower is better)
Translates to: CLRYTNLAGLLI*LDVWMSVVIFT
Trigger: GGTGAATATAACAACAGACATCCAAACATCAAGCAAGATCAGAAGTCCAGCCAAGTTTGTATACCTCAGACA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000302450.11
CDS CAA 90 bp CACTCCAGTCTAGGCTGTTTTGGTGGAAACAACCTTTGTTCAGTATaGAGTAGTGCATTTACTTGTAATAATACAAATAAGTCAGCTGAT +
Preference number: 6 (lower is better)
Translates to: HSSLGCFGGNNLCSV*SSAFTCNNTNKSAD
Trigger: ATCAGCTGACTTATTTGTATTATTACAAGTAAATGCACTACTCAATACTGAACAAAGGTTGTTTCCACCAAAACAGCCTAGACTGGAGTG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000474331.1